272 results on '"H. Rath"'
Search Results
202. Conformationally Rigid Ethynylene-Cumulene Conjugated Aromatic [30] Heteroannulenes with NIR Absorption: Synthesis, Spectroscopic and Theoretical Characterization.
- Author
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Sahoo KC, Kumaraswami MS, Usharani D, and Rath H
- Abstract
Two hitherto unknown conformationally rigid Hückel aromatic ethynylene-cumulene conjugated [30] heteroannulenes have been synthesized and characterized. A thorough solution-state spectroscopic characterization, combined with in-depth theoretical calculations, has been performed to arrive at the proposed geometry of the macrocycles. The most stable optimized structures for the free base form of both the macrocycles showed absolute planar geometries without any ring inversion with mean plane deviation (MPD) values of 0.00 and 0.00 Å, respectively, in accordance with the NMR spectroscopic observations. The induced correspondence of rigid ethynylene-cumulene moieties leading to near-infrared (NIR) absorption in neutral and protonated forms of macrocycles is the important highlight of this article. This noteworthy finding has been supported by DFT-level theoretical calculations. There is an increasing pursuit in designing such NIR-absorbing/-emitting systems due to their immense applications in medicine and biology for recognizing and transportation of various substrates. The geometry of the novel 30π aromatic heteroannulenes shows promise for evolution of such novel systems in near future.
- Published
- 2019
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203. Conformational-Switch Based Strategy Triggered by [18] π Heteroannulenes toward Reduction of Alpha Synuclein Oligomer Toxicity.
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Chakraborty R, Sahoo S, Halder N, Rath H, and Chattopadhyay K
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- Cell Line, Tumor, Escherichia coli, Humans, Neuroblastoma metabolism, alpha-Synuclein chemistry, Molecular Conformation drug effects, Neurons metabolism, Porphyrins pharmacology, alpha-Synuclein metabolism
- Abstract
A water-soluble meso-carboxy aryl substituted [18] heteroannulene (porphyrin) and its Zn-complex have been found to be viable in targeting α-Syn aggregation at all its key microevents, namely, primary nucleation, fibril elongation, and secondary nucleation, by converting the highly heterogeneous and cytotoxic aggresome into a homogeneous population of minimally toxic off-pathway oligomers, that remained unexplored until recently. With the EC
50 and dissociation constants in the low micromolar range, these heteroannulenes induce a switch in the secondary structure of toxic prefibrillar on-pathway oligomers of α-Syn, converting them into minimally toxic nonseeding off-pathway oligomers. The inhibition of the aggregation and the reduction of toxicity have been studied in vitro as well as inside neuroblastoma cells.- Published
- 2019
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204. Influence of soy isoflavones in breast cancer angiogenesis: a multiplex glass ELISA approach.
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Uifalean A, Rath H, Hammer E, Ionescu C, Iuga CA, and Lalk M
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- Breast Neoplasms blood supply, Breast Neoplasms pathology, Female, Humans, Tumor Cells, Cultured, Breast Neoplasms drug therapy, Enzyme-Linked Immunosorbent Assay methods, Isoflavones pharmacology, Neovascularization, Pathologic prevention & control, Plant Extracts pharmacology, Glycine max chemistry
- Abstract
Purpose: The aim of this study was to evaluate the anti-angiogenic properties of soy isoflavones using two breast cancer cell lines, by measuring the concentration of 30 cytokines involved in angiogenesis using a multiplex glass slide ELISA-based array., Methods: Estrogen-dependent MCF-7 cells and estrogen-independent MDA-MB-231 cells were exposed to genistein (Gen), daidzein (Dai) and a soy seed extract (Ext) for 72 hrs, at selected concentration levels. The conditioned medium was analyzed using a glass slide, multiplex sandwich ELISA-based platform with fluorescent detection which allowed the identification and the quantification of 30 angiogenesis-related cytokines., Results: In MCF-7 cells, low, stimulatory concentrations of test compounds determined the increase of CXCL16 and VEGF-A level. Gen induced the greatest effect, with 1.5-fold change compared to control. When MDA-MB-231 cells were exposed to inhibitory concentrations, all test compounds determined a reduction of CXCL16 and VEGF-A level with approximately 30%., Conclusions: Soluble CXCL16 and VEGF-A are two promoters of angiogenesis and metastasis in breast cancer. The stimulation of these two angiogenesis-related cytokines could represent one of the mechanisms explaining the proliferative effects of low isoflavone doses in estrogen-dependent cells. In estrogen-independent cells, soy isoflavones inhibited their secretion, demonstrating promising anti-angiogenic properties.
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- 2018
205. Inhibition of Rho Activity Increases Expression of SaeRS-Dependent Virulence Factor Genes in Staphylococcus aureus, Showing a Link between Transcription Termination, Antibiotic Action, and Virulence.
- Author
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Nagel A, Michalik S, Debarbouille M, Hertlein T, Gesell Salazar M, Rath H, Msadek T, Ohlsen K, van Dijl JM, Völker U, and Mäder U
- Subjects
- Animals, Anti-Bacterial Agents metabolism, Bacteremia microbiology, Bacteremia pathology, Bacterial Proteins genetics, Disease Models, Animal, Gene Deletion, Gene Expression Profiling, Genetic Complementation Test, Protein Kinases genetics, Proteome analysis, Regulon, Rho Factor genetics, Staphylococcal Infections microbiology, Staphylococcal Infections pathology, Staphylococcus aureus drug effects, Staphylococcus aureus metabolism, Staphylococcus aureus pathogenicity, Transcription Factors genetics, Virulence, Bacterial Proteins metabolism, Gene Expression Regulation, Bacterial, Protein Kinases metabolism, Rho Factor metabolism, Staphylococcus aureus genetics, Transcription Factors metabolism, Transcription Termination, Genetic, Virulence Factors biosynthesis
- Abstract
Staphylococcus aureus causes various diseases ranging from skin and soft tissue infections to life-threatening infections. Adaptation to the different host niches is controlled by a complex network of transcriptional regulators. Global profiling of condition-dependent transcription revealed adaptation of S. aureus HG001 at the levels of transcription initiation and termination. In particular, deletion of the gene encoding the Rho transcription termination factor triggered a remarkable overall increase in antisense transcription and gene expression changes attributable to indirect regulatory effects. The goal of the present study was a detailed comparative analysis of S. aureus HG001 and its isogenic rho deletion mutant. Proteome analysis revealed significant differences in cellular and extracellular protein profiles, most notably increased amounts of the proteins belonging to the SaeR regulon in the Rho-deficient strain. The SaeRS two-component system acts as a major regulator of virulence gene expression in staphylococci. Higher levels of SaeRS-dependent virulence factors such as adhesins, toxins, and immune evasion proteins in the rho mutant resulted in higher virulence in a murine bacteremia model, which was alleviated in a rho complemented strain. Inhibition of Rho activity by bicyclomycin, a specific inhibitor of Rho activity, also induced the expression of SaeRS-dependent genes, at both the mRNA and protein levels, to the same extent as observed in the rho mutant. Taken together, these findings indicate that activation of the Sae system in the absence of Rho is directly linked to Rho's transcription termination activity and establish a new link between antibiotic action and virulence gene expression in S. aureus IMPORTANCE The major human pathogen Staphylococcus aureus is a widespread commensal bacterium but also the most common cause of nosocomial infections. It adapts to the different host niches through a complex gene regulatory network. We show here that the Rho transcription termination factor, which represses pervasive antisense transcription in various bacteria, including S. aureus , plays a role in controlling SaeRS-dependent virulence gene expression. A Rho-deficient strain produces larger amounts of secreted virulence factors in vitro and shows increased virulence in mice. We also show that treatment of S. aureus with the antibiotic bicyclomycin, which inhibits Rho activity and is effective against Gram-negative bacteria, induces the same changes in the proteome as observed in the Rho-deficient strain. Our results reveal for the first time a link between transcription termination and virulence regulation in S. aureus , which implies a novel mechanism by which an antibiotic can modulate the expression of virulence factors., (Copyright © 2018 Nagel et al.)
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- 2018
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206. Sensitivity of Anatase and Rutile Phases of TiO 2 to ion irradiation: Examination of the applicability of Coulomb Explosion and Thermal Spike Models.
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Rath H, Dash BN, Benyagoub A, and Mishra NC
- Abstract
Sensitivity of the anatase and rutile phases of titanium dioxide to Swift Heavy Ion (SHI) irradiation was experimentally probed and compared with the predictions of the Coulomb explosion, analytical and inelastic thermal spike models of ion-matter interaction. Conforming to the predictions of all these models, our study indicated higher sensitivity of anatase to these ions than the rutile phase. A detailed examination however revealed that Coulomb explosion model cannot explain either the nature of variation of the interaction cross section of SHI with the energy deposited by these ions, S
e to the target electrons, or the relative values of the threshold electronic energy loss, Seth of anatase and rutile. The analytical thermal spike (a-TS) model, using the available physicochemical data for this oxide, predicted that tracks cannot form either in anatase or in rutile by 297 MeV and 511 MeV Ni ions, while inelastic thermal spike (i-TS) model predicted formation of ion tracks by 297 MeV Ni ions and their absence with 511 MeV Ni ions in both anatase and rutile. Our observation agreed with the predictions of i-TS model albeit with a difference in the radius of the tracks. In addition, we observed halo of defect ridden crystalline region of much larger radius around the ion track. Interestingly, the radius of the halo scales with the velocity of the ions, which is opposite to the conventionally observed velocity effect.- Published
- 2018
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207. Pneumococcal Metabolic Adaptation and Colonization Are Regulated by the Two-Component Regulatory System 08.
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Gómez-Mejia A, Gámez G, Hirschmann S, Kluger V, Rath H, Böhm S, Voss F, Kakar N, Petruschka L, Völker U, Brückner R, Mäder U, and Hammerschmidt S
- Subjects
- Bacteremia microbiology, Bacterial Proteins genetics, Gene Deletion, Gene Expression Profiling, Genes, Regulator, Pneumonia, Pneumococcal microbiology, Real-Time Polymerase Chain Reaction, Virulence, Adaptation, Physiological, Gene Expression Regulation, Bacterial, Metabolism, Streptococcus pneumoniae genetics, Streptococcus pneumoniae physiology
- Abstract
Streptococcus pneumoniae two-component regulatory systems (TCS) enable adaptation and ensure its maintenance in host environments. This study deciphers the impact of TCS08 on pneumococcal gene expression and its role in metabolic and pathophysiological processes. Transcriptome analysis and real-time PCR demonstrated a regulatory effect of TCS08 on genes involved mainly in environmental information processing, intermediary metabolism, and colonization by S. pneumoniae D39 and TIGR4. Striking examples are genes for fatty acid biosynthesis, genes of the arginine deiminase system, and the psa operon encoding the manganese ABC transport system. In silico analysis confirmed that TCS08 is homologous to Staphylococcus aureus SaeRS, and a SaeR-like binding motif is displayed in the promoter region of pavB , the upstream gene of the tcs08 operon encoding a surface-exposed adhesin. Indeed, PavB is regulated by TCS08 as confirmed by immunoblotting and surface abundance assays. Similarly, pilus-1 of TIGR4 is regulated by TCS08. Finally, in vivo infections using the acute pneumonia and sepsis models showed a strain-dependent effect. Loss of function of HK08 or TCS08 attenuated D39 virulence in lung infections. The RR08 deficiency attenuated TIGR4 in pneumonia, while there was no effect on sepsis. In contrast, lack of HK08 procured a highly virulent TIGR4 phenotype in both pneumonia and sepsis infections. Taken together, these data indicate the importance of TCS08 in pneumococcal fitness to adapt to the milieu of the respiratory tract during colonization. IMPORTANCE Streptococcus pneumoniae interplays with its environment by using 13 two-component regulatory systems and one orphan response regulator. These systems are involved in the sensing of environmental signals, thereby modulating pneumococcal pathophysiology. This study aimed to understand the functional role of genes subject to control by the TCS08. The identified genes play a role in transport of compounds such as sugars or amino acids. In addition, the intermediary metabolism and colonization factors are modulated by TCS08. Thus, TCS08 regulates genes involved in maintaining pneumococcal physiology, transport capacity, and adhesive factors to enable optimal colonization, which represents a prerequisite for invasive pneumococcal disease., (Copyright © 2018 Gómez-Mejia et al.)
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- 2018
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208. Exploring determinants of care-seeking behaviour of oral cancer patients in India: A qualitative content analysis.
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Rath H, Shah S, Sharma G, and Mishra E
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- Adult, Carcinoma, Squamous Cell diagnosis, Carcinoma, Squamous Cell therapy, Female, Humans, Male, Middle Aged, Mouth Neoplasms diagnosis, Mouth Neoplasms therapy, Physicians, Qualitative Research, Surveys and Questionnaires, Carcinoma, Squamous Cell psychology, Delayed Diagnosis, Mouth Neoplasms psychology, Patient Acceptance of Health Care psychology, Referral and Consultation statistics & numerical data, Time-to-Treatment
- Abstract
Background: A major public health concern in India is the high morbidity and mortality rates of oral cancer because of late diagnosis. Among the several determinants of this late diagnosis, the most important is the healthcare-seeking behaviour of the oral cancer patients. The aim of this study was to explore the care-seeking behaviour and its determinants among oral cancer patients., Methods: A face-to-face in-depth interview was conducted among 70 oral cancer patients using a semi-structured questionnaire, and qualitative content analysis of the results was performed., Results: All the patients had squamous-cell carcinoma and none had attended any screening programme. The most common site affected was the buccal mucosa with a non-healing wound. Most of the patients contacted a doctor available nearby; only 7% of patients consulted a dentist. Only one patient approached a traditional healer. The median patient delay was 30 (4-365) days and the professional delay was 40 (4-650) days. Enablers included determinants such as increasing symptoms (80%), influence of the society (74%), fear (10%), and social media (3%). The main barriers were lack of awareness (97%), hope that the lesion will heal spontaneously (90%), lack of perception of seriousness (64%), financial constraints (55%), provider switching (47%), and missed diagnosis (44%)., Conclusion: The care-seeking path among oral cancer patients is complex, customised, and influenced by multiple patient-related and system-related factors., (Copyright © 2018. Published by Elsevier Ltd.)
- Published
- 2018
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209. Neutral Porphyrin Derivative Exerts Anticancer Activity by Targeting Cellular Topoisomerase I (Top1) and Promotes Apoptotic Cell Death without Stabilizing Top1-DNA Cleavage Complexes.
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Das SK, Ghosh A, Paul Chowdhuri S, Halder N, Rehman I, Sengupta S, Sahoo KC, Rath H, and Das BB
- Subjects
- Antineoplastic Agents chemistry, Antineoplastic Agents pharmacology, Biocatalysis drug effects, DNA Breaks drug effects, Humans, MCF-7 Cells, Reactive Oxygen Species metabolism, Topoisomerase I Inhibitors chemistry, Topoisomerase I Inhibitors pharmacology, Apoptosis drug effects, DNA Cleavage drug effects, DNA Topoisomerases, Type I metabolism, Porphyrins chemistry, Porphyrins pharmacology
- Abstract
Camptothecin (CPT) selectively traps topoisomerase 1-DNA cleavable complexes (Top1cc) to promote anticancer activity. Here, we report the design and synthesis of a new class of neutral porphyrin derivative 5,10-bis(4-carboxyphenyl)-15, 20-bis(4-dimethylaminophenyl)porphyrin (compound 8) as a potent catalytic inhibitor of human Top1. In contrast to CPT, compound 8 reversibly binds with the free enzyme and inhibits the formation of Top1cc and promotes reversal of the preformed Top1cc with CPT. Compound 8 induced inhibition of Top1cc formation in live cells was substantiated by fluorescence recovery after photobleaching (FRAP) assays. We established that MCF7 cells treated with compound 8 trigger proteasome-mediated Top1 degradation, accumulate higher levels of reactive oxygen species (ROS), PARP1 cleavage, oxidative DNA fragmentation, and stimulate apoptotic cell death without stabilizing apoptotic Top1-DNA cleavage complexes. Finally, compound 8 shows anticancer activity by targeting cellular Top1 and preventing the enzyme from directly participating in the apoptotic process.
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- 2018
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210. Changes of DNA topology affect the global transcription landscape and allow rapid growth of a Bacillus subtilis mutant lacking carbon catabolite repression.
- Author
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Reuß DR, Rath H, Thürmer A, Benda M, Daniel R, Völker U, Mäder U, Commichau FM, and Stülke J
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- Cyclic AMP Receptor Protein metabolism, Bacillus subtilis genetics, Bacillus subtilis metabolism, Bacterial Proteins genetics, Bacterial Proteins metabolism, Catabolite Repression genetics, Cyclic AMP Receptor Protein deficiency, DNA, Bacterial genetics, DNA, Bacterial metabolism, Mutation, Transcription, Genetic genetics
- Abstract
Bacteria are able to prioritize preferred carbon sources from complex mixtures. This is achieved by the regulatory phenomenon of carbon catabolite repression. To allow the simultaneous utilization of multiple carbon sources and to prevent the time-consuming adaptation to each individual nutrient in biotechnological applications, mutants lacking carbon catabolite repression can be used. However, such mutants often exhibit pleiotropic growth defects. We have isolated and characterized mutations that overcome the growth defect of Bacillus subtilis ccpA mutants lacking the major regulator of catabolite repression, in particular their glutamate auxotrophy. Here we show, that distinct mutations affecting the essential DNA topoisomerase I (TopA) cause glutamate prototrophy of the ccpA mutant. These suppressing variants of the TopA enzyme exhibit increased activity resulting in enhanced relaxation of the DNA. Reduced DNA supercoiling results in enhanced expression of the gltAB operon encoding the biosynthetic glutamate synthase. This is achieved by a significant re-organization of the global transcription network accompanied by re-routing of metabolism, which results in inactivation of the glutamate dehydrogenase. Our results provide a link between DNA topology, the global transcriptional network, and glutamate metabolism and suggest that specific topA mutants may be well suited for biotechnological purposes., (Copyright © 2017 International Metabolic Engineering Society. Published by Elsevier Inc. All rights reserved.)
- Published
- 2018
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211. Knowledge, attitude and practices of institution-based dentists toward nicotine replacement therapy.
- Author
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Shah S, Rath H, and Sharma G
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- Adult, Cross-Sectional Studies, Female, Humans, Male, Self Report, Attitude of Health Personnel, Attitude to Health, Dentistry, Faculty, Dental, Health Knowledge, Attitudes, Practice, Nicotine therapeutic use, Students, Dental, Tobacco Use Cessation methods
- Abstract
Background: Dental institutions provide very good platform to educate budding dentists to inculcate the habit of tobacco cessation counseling, including nicotine replacement therapy (NRT)., Aims: The aim of this study is to assess and compare the knowledge, attitude, and practice of institutionally attached postgraduate students and faculty members of the dental profession toward NRT., Methods: For a cross-sectional survey among 201 participants from four dental colleges in Odisha, India, a 28-item questionnaire was developed, subdivided into four categories: demographic details, assessment of NRT knowledge (21-item), assessment of attitude (5-item), practice (1-item with 4 subgroup questions), and 1-item assessing barriers., Statistical Analysis Used: Data were analyzed using descriptive statistics, Chi-square test, and multiple logistic regression., Results: Only one-third of participants were aware of the dosage, mechanism of action, pharmacology, duration of the prescription, brand name, side effects, contraindications, and availability. Around two-third of participants who claimed to practice NRT, agreed to follow up the patients whom they prescribed NRT. Half of the study participants reported that they do not keep a record of these patients. Around 10% of respondents practicing NRT were confident enough to practice it without facing any problem. Major barriers for practicing NRT was found to be a lack of awareness (54.22%) followed by availability and bitter taste. The total knowledge score was found to be the strongest predictor of practicing NRT in multiple logistic regression., Conclusion: Lack of detailed knowledge regarding NRT reduces the chance of practicing inspite of having a positive attitude among institutionally attached dentists.
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- 2017
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212. Ethynylene-linked Figure-Eight Octaphyrin(1.2.1.1.1.2.1.1): Synthesis and Characterization of Its Two Oxidation States.
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Sahoo KC, Majewski MA, Stępień M, and Rath H
- Abstract
An octaphyrin(1.2.1.1.1.2.1.1) containing two conjugated ethynylene bridges has been synthesized and characterized. The macrocycle reveals complex conformational dynamics dependent on its protonation and oxidation state. The [40]annulenoid macrocycle and its [38]annulenoid oxidized form display residual macrocyclic ring currents. In spite of its low apparent aromaticity the new octaphyrin is a potent chromophore with a vis-NIR absorption profile strongly influenced by the redox and acid-base chemistry.
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- 2017
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213. Actualizing culture change: The Promoting Excellent Alternatives in Kansas Nursing Homes (PEAK 2.0) program.
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Doll GA, Cornelison LJ, Rath H, and Syme ML
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- Humans, Kansas, Patient-Centered Care organization & administration, Quality of Health Care organization & administration, Quality of Life, Reimbursement, Incentive, Long-Term Care organization & administration, Nursing Homes organization & administration, Organizational Culture, Organizational Innovation economics
- Abstract
Nursing homes have been challenged in their attempts to achieve deep, organizational change (i.e., culture change) aimed at providing quality of care and quality of life for nursing home residents through person-centered care. To attain deep change, 2 well-defined components must be in place: a shared understanding of (a) the what, or content goals, and (b) the how, or process of change. However, there are few examples of this at a macro or micro level in long-term care. In an effort to enact true culture change in nursing homes statewide, the Kansas Department for Aging and Disability Services implemented the Promoting Excellent Alternatives in Kansas Nursing Homes program. This program is a Medicaid, pay-for-performance program that formalizes the content and process of achieving culture change through person-centered care principles. This article aims to detail the content (what) and process (how) of a model macro-level program of culture change throughout the State of Kansas. Applications to the micro level (individual homes) are presented, and implications for psychologists' roles in facilitating culture change are discussed. (PsycINFO Database Record, ((c) 2017 APA, all rights reserved).)
- Published
- 2017
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214. Biofilm formation by the oral pioneer colonizer Streptococcus gordonii: an experimental and numerical study.
- Author
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Rath H, Feng D, Neuweiler I, Stumpp NS, Nackenhorst U, and Stiesch M
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- Dental Implants adverse effects, Humans, Streptococcal Infections etiology, Streptococcus gordonii genetics, Streptococcus gordonii growth & development, Biofilms, Dental Implants microbiology, Mouth microbiology, Streptococcal Infections microbiology, Streptococcus gordonii physiology
- Abstract
For decades, extensive research efforts have been conducted to improve the functionality and stability of implants. Especially in dentistry, implant treatment has become a standard medical practice. The treatment restores full dental functionality, helping patients to maintain high quality of life. However, about 10% of the patients suffer from early and late device failure due to peri-implantitis, an inflammatory disease of the tissues surrounding the implant. Peri-implantitis is caused by progressive microbial colonization of the device surface and the formation of microbial communities, so-called biofilms. This infection can ultimately lead to implant failure. The causative agents for the inflammatory disease, periodontal pathogenic biofilms, have already been extensively studied, but are still not completely understood. As numerical simulations will have the potential to predict oral biofilm formation precisely in the future, for the first time, this study aimed to analyze Streptococcus gordonii biofilms by combining experimental studies and numerical simulation. The study demonstrated that numerical simulation was able to precisely model the influence of different nutrient concentration and spatial distribution of active and inactive biomass of the biofilm in comparison with the experimental data. This model may provide a less time-consuming method for the future investigation of any bacterial biofilm., (© FEMS 2017. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.)
- Published
- 2017
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215. Development of a flow chamber system for the reproducible in vitro analysis of biofilm formation on implant materials.
- Author
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Rath H, Stumpp SN, and Stiesch M
- Subjects
- Aggregatibacter physiology, Microfluidics methods, Porphyromonas physiology, Streptococcus physiology, Biofilms, Dental Implants microbiology, Microfluidics instrumentation
- Abstract
Since the introduction of modern dental implants in the 1980s, the number of inserted implants has steadily increased. Implant systems have become more sophisticated and have enormously enhanced patients' quality of life. Although there has been tremendous development in implant materials and clinical methods, bacterial infections are still one of the major causes of implant failure. These infections involve the formation of sessile microbial communities, called biofilms. Biofilms possess unique physical and biochemical properties and are hard to treat conventionally. There is a great demand for innovative methods to functionalize surfaces antibacterially, which could be used as the basis of new implant technologies. Present, there are few test systems to evaluate bacterial growth on these surfaces under physiological flow conditions. We developed a flow chamber model optimized for the assessment of dental implant materials. As a result it could be shown that biofilms of the five important oral bacteria Streptococcus gordonii, Streptococcus oralis, Streptococcus salivarius, Porphyromonas gingivalis, and Aggregatibacter actinomycetemcomitans, can be reproducibly formed on the surface of titanium, a frequent implant material. This system can be run automatically in combination with an appropriate microscopic device and is a promising approach for testing the antibacterial effect of innovative dental materials., Competing Interests: The authors have declared that no competing interests exist.
- Published
- 2017
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216. Large-scale reduction of the Bacillus subtilis genome: consequences for the transcriptional network, resource allocation, and metabolism.
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Reuß DR, Altenbuchner J, Mäder U, Rath H, Ischebeck T, Sappa PK, Thürmer A, Guérin C, Nicolas P, Steil L, Zhu B, Feussner I, Klumpp S, Daniel R, Commichau FM, Völker U, and Stülke J
- Subjects
- Bacillus subtilis metabolism, Bacterial Proteins genetics, Gene Expression Regulation, Bacterial genetics, Gene Regulatory Networks genetics, Genes, Essential genetics, Bacillus subtilis genetics, Genome, Bacterial genetics, Transcription, Genetic
- Abstract
Understanding cellular life requires a comprehensive knowledge of the essential cellular functions, the components involved, and their interactions. Minimized genomes are an important tool to gain this knowledge. We have constructed strains of the model bacterium, Bacillus subtilis, whose genomes have been reduced by ∼36%. These strains are fully viable, and their growth rates in complex medium are comparable to those of wild type strains. An in-depth multi-omics analysis of the genome reduced strains revealed how the deletions affect the transcription regulatory network of the cell, translation resource allocation, and metabolism. A comparison of gene counts and resource allocation demonstrates drastic differences in the two parameters, with 50% of the genes using as little as 10% of translation capacity, whereas the 6% essential genes require 57% of the translation resources. Taken together, the results are a valuable resource on gene dispensability in B. subtilis, and they suggest the roads to further genome reduction to approach the final aim of a minimal cell in which all functions are understood., (© 2017 Reuß et al.; Published by Cold Spring Harbor Laboratory Press.)
- Published
- 2017
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217. Protonation Dependent Topological Dichotomy of Core Modified Hexaphyrins: Synthesis, Characterization, and Excited State Dynamics.
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Mallick A, Oh J, Majewski MA, Stępień M, Kim D, and Rath H
- Abstract
Two hitherto unknown core modified hexaphyrin analogues have been synthesized and characterized where the conformational dynamics of these macrocycles in the free base form is achieved by the rotation of thienothiophene units. Further unique property of these macrocycles is the Hückel-Möbius topological switching. The thermodynamic equilibrium and kinetics of the interconversion leading to Hückel-Möbius switches have been triggered by external stimuli, such as protonation and/or temperature. We have provided a thorough solution-state spectroscopic characterization, solid-state structural evidence combined with in-depth theoretical calculations to investigate the crucial factors involved in such interconversion between Hückel and Möbius topologies for these hexaphyrins which will be useful in designing future new members to expanded porphyrin chemistry.
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- 2017
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218. Assessment of Demirjian's 8-teeth technique of age estimation and Indian-specific formulas in an East Indian population: A cross-sectional study.
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Rath H, Rath R, Mahapatra S, and Debta T
- Abstract
Background: The age of an individual can be assessed by a plethora of widely available tooth-based techniques, among which radiological methods prevail. The Demirjian's technique of age assessment based on tooth development stages has been extensively investigated in different populations of the world., Aim: The present study is to assess the applicability of Demirjian's modified 8-teeth technique in age estimation of population of East India (Odisha), utilizing Acharya's Indian-specific cubic functions., Materials and Methods: One hundred and six pretreatment orthodontic radiographs of patients in an age group of 7-23 years with representation from both genders were assessed for eight left mandibular teeth and scored as per the Demirjian's 9-stage criteria for teeth development stages. Age was calculated on the basis of Acharya's Indian formula. Statistical analysis was performed to compare the estimated and actual age. All data were analyzed using SPSS 20.0 (SPSS Inc., Chicago, Illinois, USA) and MS Excel Package., Results: The results revealed that the mean absolute error (MAE) in age estimation of the entire sample was 1.3 years with 50% of the cases having an error rate within ± 1 year. The MAE in males and females (7-16 years) was 1.8 and 1.5, respectively. Likewise, the MAE in males and females (16.1-23 years) was 1.1 and 1.3, respectively., Conclusion: The low error rate in estimating age justifies the application of this modified technique and Acharya's Indian formulas in the present East Indian population., Competing Interests: There are no conflicts of interest.
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- 2017
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219. Theoretical and experimental evidence for eliminating persister bacteria by manipulating killing timing.
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Cogan NG, Rath H, Kommerein N, Stumpp SN, and Stiesch M
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- Anti-Bacterial Agents administration & dosage, Biofilms drug effects, Microbial Sensitivity Tests, Anti-Bacterial Agents therapeutic use, Drug Resistance, Multiple, Bacterial physiology, Models, Theoretical, Staphylococcal Infections drug therapy, Staphylococcus aureus drug effects
- Abstract
Formation of a transient sub-population of bacteria, referred to as persisters, is one of the most important and least understood mechanisms that bacteria employ to evade elimination. Persister cells appear to be slow-growing bacteria that are broadly protected from a wide range of antibiotics. Using both theoretical and experimental methods, we show that alternating the application and withdrawal of antibiotics can be an effective treatment-as long as the timing of the protocol is estimated with precision. More specifically, we demonstrate that timing the alternating treatment based on theoretical predictions is confirmed using experimental observations. These results support a large class of theoretical studies that show that, even without complete understanding of the biological mechanisms, these models can provide insight into properties of the system., (© FEMS 2016. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.)
- Published
- 2016
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220. Aromatic Fused [30] Heteroannulenes with NIR Absorption and NIR Emission: Synthesis, Characterization, and Excited-State Dynamics.
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Mallick A, Oh J, Kim D, and Rath H
- Abstract
Two hitherto unknown planar aromatic [30] fused heterocyclic macrocycles (1.1.0.1.1.0), with NIR absorption in free-base form and protonation-induced enhanced NIR emission, have been synthesized from easy to make precursors. The induced correspondence of fusion on the macrocyclic structure, electronic absorption, and emission spectra have been highlighted., (© 2016 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.)
- Published
- 2016
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221. Second Messenger Signaling in Bacillus subtilis: Accumulation of Cyclic di-AMP Inhibits Biofilm Formation.
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Gundlach J, Rath H, Herzberg C, Mäder U, and Stülke J
- Abstract
The Gram-positive model organism Bacillus subtilis produces the essential second messenger signaling nucleotide cyclic di-AMP. In B. subtilis and other bacteria, c-di-AMP has been implicated in diverse functions such as control of metabolism, cell division and cell wall synthesis, and potassium transport. To enhance our understanding of the multiple functions of this second messenger, we have studied the consequences of c-di-AMP accumulation at a global level by a transcriptome analysis. C-di-AMP accumulation affected the expression of about 700 genes, among them the two major operons required for biofilm formation. The expression of both operons was severely reduced both in the laboratory and a non-domesticated strain upon accumulation of c-di-AMP. In excellent agreement, the corresponding strain was unable to form complex colonies. In B. subtilis, the transcription factor SinR controls the expression of biofilm genes by binding to their promoter regions resulting in transcription repression. Inactivation of the sinR gene restored biofilm formation even at high intracellular c-di-AMP concentrations suggesting that the second messenger acts upstream of SinR in the signal transduction pathway. As c-di-AMP accumulation did not affect the intracellular levels of SinR, we conclude that the nucleotide affects the activity of SinR.
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- 2016
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222. Induced Correspondence of a Local π-Aromatic Sextet in Heteroannulenes: Synthesis and Characterization.
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Mallick A, Oh J, Kim D, Ishida M, Furuta H, and Rath H
- Abstract
Acid-catalyzed [3+3] condensation reactions of two hitherto unknown tripyrrane moieties with pentafluorobenzaldehyde has led to the formation of new generation heteroannulene (4.1.4.1) and mutant heteroannulene (1.1.1.1.1.1). Inclusion of local π-aromatic sextets, namely the N-methyl pyrrole rings through β,β-linkages and α,β-linkages, has led to the isolation of first ever heteroannulenes cross-conjugated at four points and two points respectively within the macrocycles., (© 2016 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.)
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- 2016
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223. Möbius Aromatic Core-Modified Heterocyclic [20] Macrocycles (4.1.1) with a Protruding N-Methyl Pyrrole Ring.
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Mallick A and Rath H
- Abstract
Herein, we report the first synthesis of an unorthodox tripyrrane moiety from the regioselective β-benzoylation of pyrrole and the acid-catalyzed condensation of the desired precursors. A [3+1] Mac Donald type condensation strategy for this tripyrrane has led to the exclusive isolation of two hitherto-unknown aromatic [20] heterocyclic macrocycles (4.1.1)., (© 2016 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.)
- Published
- 2016
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224. Risk Assessment of Tuberculosis in Contacts by IFN-γ Release Assays. A Tuberculosis Network European Trials Group Study.
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Zellweger JP, Sotgiu G, Block M, Dore S, Altet N, Blunschi R, Bogyi M, Bothamley G, Bothe C, Codecasa L, Costa P, Dominguez J, Duarte R, Fløe A, Fresard I, García-García JM, Goletti D, Halm P, Hellwig D, Henninger E, Heykes-Uden H, Horn L, Kruczak K, Latorre I, Pache G, Rath H, Ringshausen FC, Ruiz AS, Solovic I, Souza-Galvão ML, Widmer U, Witte P, and Lange C
- Subjects
- Adolescent, Adult, Aged, Chemoprevention, Child, Child, Preschool, Disease Progression, Europe, Female, Humans, Infant, Infant, Newborn, Interferon-gamma Release Tests, Latent Tuberculosis diagnosis, Male, Middle Aged, Multicenter Studies as Topic, Mycobacterium tuberculosis immunology, Mycobacterium tuberculosis isolation & purification, Risk Assessment methods, Tuberculin Test methods, Tuberculosis diagnosis, Tuberculosis drug therapy, Tuberculosis prevention & control, Young Adult, Antitubercular Agents administration & dosage, Contact Tracing, Latent Tuberculosis transmission
- Abstract
Rationale: Latent infection with Mycobacterium tuberculosis is defined by a positive IFN-γ release assay (IGRA) result in the absence of active tuberculosis. Only few, mostly monocentric studies have evaluated the role of IGRAs to predict the development of tuberculosis in recent contacts in low-incidence countries of tuberculosis., Objectives: To analyze IGRA results and the effect of preventive chemotherapy on tuberculosis progression rates among recent contacts., Methods: Results from contact investigations at 26 centers in 10 European countries including testing for latent infection with M. tuberculosis by the QuantiFERON-TB Gold In-Tube (QFT) test or the T-SPOT.TB (TSPOT) were prospectively collected and analyzed., Measurements and Main Results: Among 5,020 contacts of 1,023 index cases, 25 prevalent secondary cases were identified at screening. Twenty-four incident cases occurred among 4,513 contacts during 12,326 years of cumulative follow-up. In those with a positive IGRA result, tuberculosis incidence was 0.2 (QFT) and 0 (TSPOT) per 100 patient-years when contacts received preventive chemotherapy versus 1.2 (QFT) and 0.8 (TSPOT) per 100 patient-years in those not treated (38 and 37 patients needed to be treated to prevent one case, respectively). Positive and negative predictive values were 1.9% (95% confidence interval [CI], 1.1-3.0) and 99.9% (95% CI, 99.7-100) for the QFT and 0.7% (95% CI, 0.1-2.6) and 99.7% (95% CI, 99.1-99.9) for the TSPOT., Conclusions: Tuberculosis rarely developed among contacts, and preventive chemotherapy effectively reduced the tuberculosis risk among IGRA-positive contacts. Although the negative predictive value of IGRAs is high, the risk for the development of tuberculosis is poorly predicted by these assays.
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- 2015
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225. Reversal of Hückel (anti)aromaticity in the lowest triplet states of hexaphyrins and spectroscopic evidence for Baird's rule.
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Sung YM, Yoon MC, Lim JM, Rath H, Naoda K, Osuka A, and Kim D
- Abstract
The reversal of (anti)aromaticity in a molecule's triplet excited state compared with its closed-shell singlet ground state is known as Baird's rule and has attracted the interest of synthetic, physical organic chemists and theorists because of the potential to modulate the fundamental properties of highly conjugated molecules. Here we show that two closely related bis-rhodium hexaphyrins (R26H and R28H) containing [26] and [28] π-electron peripheries, respectively, exhibit properties consistent with Baird's rule. In the ground state, R26H exhibits a sharp Soret-like band and distinct Q-like bands characteristic of an aromatic porphyrinoid, whereas R28H exhibits a broad absorption spectrum without Q-like bands, which is typical of an antiaromatic porphyrinoid. In contrast, the T-T absorption of R26H is broad, weak and featureless, whereas that of R28H displays an intense and sharp Soret-like band. These spectral signatures, in combination with quantum chemical calculations, are in line with qualitative expectations based on Baird's rule.
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- 2015
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226. Aromatic fused heterocyclic [22] macrocycles with NIR absorption.
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Rath H, Mallick A, Ghosh T, and Kalita A
- Abstract
Three related aromatic [22] heteroporphyrins have been synthesized and characterized, with the target of achieving NIR absorption. The propensity of these smallest π-conjugated macrocycles to absorb in the NIR region is benefitted from the fusion/annelation of the precursor heterocycles.
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- 2014
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227. Rings and threads as linkers in metal-organic frameworks and poly-rotaxanes.
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Whitehead GF, Cross B, Carthy L, Milway VA, Rath H, Fernandez A, Heath SL, Muryn CA, Pritchard RG, Teat SJ, Timco GA, and Winpenny RE
- Abstract
Coordination polymers and metal-organic rotaxane frameworks are reported where the organic linker is replaced by functionalised inorganic clusters that act as bridging ligands.
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- 2013
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228. Studies of hybrid organic-inorganic [2] and [3]rotaxanes bound to Au surfaces.
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Rath H, Timco GA, Corradini V, Ghirri A, del Pennino U, Fernandez A, Pritchard RG, Muryn CA, Affronte M, and Winpenny RE
- Abstract
Hybrid organic-inorganic [2]- and [3]rotaxanes have been synthesised, and their ability to bind to Au surfaces studied; the length of the tethering group is found to control how the supramolecular assembly binds to the surface and we find that [2]rotaxanes show improved stability over previous studies of simple inorganic rings.
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- 2013
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229. Assessment of oral health status and Treatment needs of HIV/AIDS patients visiting Government Hospitals and Rehabilitation centers in Banglore city.
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Rath H and Raj SC
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- 2013
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230. A classification of spin frustration in molecular magnets from a physical study of large odd-numbered-metal, odd electron rings.
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Baker ML, Timco GA, Piligkos S, Mathieson JS, Mutka H, Tuna F, Kozlowski P, Antkowiak M, Guidi T, Gupta T, Rath H, Woolfson RJ, Kamieniarz G, Pritchard RG, Weihe H, Cronin L, Rajaraman G, Collison D, McInnes EJ, and Winpenny RE
- Abstract
The term "frustration" in the context of magnetism was originally used by P. W. Anderson and quickly adopted for application to the description of spin glasses and later to very special lattice types, such as the kagomé. The original use of the term was to describe systems with competing antiferromagnetic interactions and is important in current condensed matter physics in areas such as the description of emergent magnetic monopoles in spin ice. Within molecular magnetism, at least two very different definitions of frustration are used. Here we report the synthesis and characterization of unusual nine-metal rings, using magnetic measurements and inelastic neutron scattering, supported by density functional theory calculations. These compounds show different electronic/magnetic structures caused by frustration, and the findings lead us to propose a classification for frustration within molecular magnets that encompasses and clarifies all previous definitions.
- Published
- 2012
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231. Potential role for IL-2 ELISpot in differentiating recent and remote infection in tuberculosis contact tracing.
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Krummel B, Strassburg A, Ernst M, Reiling N, Eker B, Rath H, Hoerster R, Wappler W, Glaewe A, Schoellhorn V, Sotgiu G, and Lange C
- Subjects
- Adolescent, Adult, Cell Line, Child, Female, Humans, Interferon-gamma metabolism, Logistic Models, Male, Mycobacterium tuberculosis metabolism, Skin Tests, Tuberculin metabolism, Tuberculosis immunology, Tuberculosis microbiology, Young Adult, Immunoassay methods, Interleukin-2 metabolism, Mycobacterium tuberculosis immunology, Tuberculosis diagnosis
- Abstract
Interferon (IFN)-gamma release assays (IGRA) have improved tuberculosis contact tracing, but discrimination of recent from remote Mycobacterium tuberculosis contacts is not possible by IGRA alone. We present results of a tuberculosis contact investigation with a new early-secretory-antigenic-target (ESAT)-6 and culture-filtrate-protein (CFP)-10 specific interleukin (IL)-2 ELISpot in addition to ESAT-6 and CFP-10 specific IFN-gamma ELISpot and tuberculin skin testing (TST). Results of the TST, IFN-gamma ELISpot and IL-2 ELISpot were positive in 6/172 (3.4%), 7/167 (4.2%) and 6/196 (3.1%) of contacts, respectively. Close contact (> or =100 hours) to the index case increased the risk of positive results in the IFN-gamma ELISpot, TST, and IL-2 ELISpot by 40.8, 19.3, and 2.5 times, respectively. Individuals with a positive IFN-gamma ELISpot/negative IL-2 ELISpot result had a median (IQR) duration of index case exposure of 568 hours (133_1000) compared to individuals with a positive IFN-gamma ELISpot/positive IL-2 ELISpot result (median = 24 hours; 20_130; p-value = 0.047). Combination of a M. tuberculosis specific IFN-gamma ELISpot with a M. tuberculosis specific IL-2 ELISpot significantly improved the identification of individuals with the highest risk of recent M. tuberculosis infection and is a promising method that should be explored to target tuberculosis preventive chemotherapy.
- Published
- 2010
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232. A stable organic radical delocalized on a highly twisted pi system formed upon palladium metalation of a Möbius aromatic hexaphyrin.
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Rath H, Tokuji S, Aratani N, Furukawa K, Lim JM, Kim D, Shinokubo H, and Osuka A
- Published
- 2010
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233. Bis-rhodium hexaphyrins: metalation of [28]hexaphyrin and a smooth Hückel aromatic-antiaromatic interconversion.
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Rath H, Aratani N, Lim JM, Lee JS, Kim D, Shinokubo H, and Osuka A
- Abstract
Metalation of [28]hexaphyrin(1.1.1.1.1.1) with [RhCl(CO)(2)](2) resulted in the formation of an antiaromatic bis-Rh(i) complex, which can be oxidized to an aromatic bis-Rh(i) complex with retention of its rectangular structure.
- Published
- 2009
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234. Unambiguous identification of Möbius aromaticity for meso-aryl-substituted [28]hexaphyrins(1.1.1.1.1.1).
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Sankar J, Mori S, Saito S, Rath H, Suzuki M, Inokuma Y, Shinokubo H, Kim KS, Yoon ZS, Shin JY, Lim JM, Matsuzaki Y, Matsushita O, Muranaka A, Kobayashi N, Kim D, and Osuka A
- Abstract
meso-Aryl-substituted [28]hexaphyrins(1.1.1.1.1.1) have been examined by (1)H, (13)C, and (19)F NMR spectroscopies, UV-vis absorption spectroscopy, magnetic circular dichroism spectroscopy, and single-crystal X-ray diffraction analysis. All of these data consistently indicate that [28]hexaphyrins(1.1.1.1.1.1) in solution at 25 degrees C exist largely as an equilibrium among several rapidly interconverting twisted Möbius conformations with distinct aromaticities, with a small contribution from a planar rectangular conformation with antiaromatic character at slightly higher energy. In the solid state, [28]hexaphyrins(1.1.1.1.1.1) take either planar or Möbius-twisted conformations, depending upon the meso-aryl substituents and crystallization conditions, indicating a small energy difference between the two conformers. Importantly, when the temperature is decreased to -100 degrees C in THF, these rapid interconversions among Möbius conformations are frozen, allowing the detection of a single [28]hexaphyrin(1.1.1.1.1.1) species having a Möbius conformation. Detailed analyses of the solid-state Möbius structures of compounds 2b, 2c, and 2f showed that singly twisted structures are achieved without serious strain and that cyclic pi-conjugation is well-preserved, as needed for exhibiting strong diatropic ring currents. Actually, the harmonic-oscillator model for aromaticity (HOMA) values of these structures are significantly large (0.85, 0.69, and 0.71, respectively), confirming the first demonstration of stable Möbius aromatic systems consisting of free-base expanded porphyrins without the assistance of metal coordination.
- Published
- 2008
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235. meso-meso-Linked corrole dimers with modified cores: synthesis, characterization, and properties.
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Sankar J, Rath H, Prabhuraja V, Gokulnath S, Chandrashekar TK, Purohit CS, and Verma S
- Subjects
- Catalysis, DNA chemistry, DNA metabolism, Dimerization, Electrochemistry, Electrons, Iron chemistry, Molecular Structure, Muramidase metabolism, Oxidation-Reduction, Photolysis, Porphyrins chemistry, Silver chemistry, Spectrum Analysis, Cross-Linking Reagents chemistry
- Abstract
The synthesis and characterization of the first examples of core-modified corrole dimers linked through the meso positions are described. The dimers are obtained by a simple Ag(I)- or Fe(III)-catalyzed coupling reaction in near-quantitative yields. The corroles obtained are metalated with metal ions, such as Cu(II) and Ni(II). The electronic-absorption spectral studies reveal weak electronic interaction between the two subunits and the exciton coupling observed for the free-base corrole dimer (1717 cm(-1)) is lower than that for the corresponding protonated derivative (4081 cm(-1)). The solution-state structure derived from (1)H and two-dimensional NMR spectral studies reveals a noncoplanar arrangement of two corrole units. Geometry optimization at the B3LYP-631G level also confirms the noncoplanar arrangement of corroles with a dihedral angle of 64.8 degrees between two corrole planes. The electron paramagnetic resonance (EPR) and magnetic characterization studies on the paramagnetic copper-metalated dimer indicate that both copper ions behave as independent spins without any noticeable interaction. Results of fluorescence studies reveal a bathochromic shift of about 60 nm upon dimerization. The first hyperpolarizability (beta) measured by using the hyper Rayleigh scattering (HRS) method reveals doubling of the beta values on progressing from monomer to dimer, attributed to enhanced pi conjugation. The use of copper dimers in the photocleavage of DNA is also explored. It is shown that the bimetallic copper dimer selectively cleaves the nucleic acids without affecting the proteins, suggesting a possible application of the copper complex in the removal of nucleic acid contaminants from protein extracts through a simple photolytic pathway.
- Published
- 2007
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236. Aromatic core modified decaphyrins with the largest two-photon absorption cross-sections: syntheses and characterization.
- Author
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Rath H, Prabhuraja V, Chandrashekar TK, Nag A, Goswami D, and Joshi BS
- Subjects
- Molecular Conformation, Molecular Structure, Pyrroles chemistry, Spectrophotometry, Ultraviolet, Thiophenes chemistry, Macromolecular Substances chemical synthesis, Macromolecular Substances chemistry, Pyrroles chemical synthesis, Thiophenes chemical synthesis
- Abstract
[structure: see text] Core-modified aromatic decaphyrins with 42pi conjugated electrons exhibit the highest two-photon absorption cross-section value (sigma(2) = 108,000 GM) known for any organic molecule, suggesting possible device applications in the field of nonlinear optics.
- Published
- 2006
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237. Aromatic core-modified twisted heptaphyrins[1.1.1.1.1.1.0]: syntheses and structural characterization.
- Author
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Rath H, Sankar J, PrabhuRaja V, Chandrashekar TK, and Joshi BS
- Abstract
[reaction: see text] First examples of aromatic core-modified twisted heptapyrrolic systems with six meso links have been obtained via a general [3 + 4] acid-catalyzed condensation method. Despite the twisted conformation, these heptaphyrins exhibit aromaticity in solution, unlike most of the all-aza analogues.
- Published
- 2005
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238. Barrett's esophagus: a discrepancy between macroscopic and histological diagnosis.
- Author
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Endlicher E, Rümmele P, Beer S, Knüchel R, Rath H, Schlottmann K, Grossmann J, Woenckhaus U, Schölmerich J, and Messmann H
- Subjects
- Adolescent, Adult, Aged, Aged, 80 and over, Barrett Esophagus pathology, Esophagoscopy, Female, Gastroscopy, Humans, Male, Middle Aged, Prospective Studies, Risk Factors, Sensitivity and Specificity, Barrett Esophagus diagnosis
- Abstract
Background and Study Aims: The diagnosis of Barrett's esophagus at present requires endoscopic and histological confirmation of specialized intestinal metaplasia. This study prospectively analyzed the endoscopic and histological prevalence of Barrett's esophagus and the risk factors for the presence of Barrett's esophagus among patients being treated in an endoscopy unit., Patients and Methods: A total of 474 unselected patients (58% men; mean age 52 y) were included in the study. Two biopsy specimens each were taken from below and above the squamocolumnar junction and from the antrum and gastric body. Four-quadrant biopsies were taken every 1-2 cm to confirm a macroscopic suspicion of Barrett's esophagus., Results: Barrett's esophagus was suspected at endoscopy in 109 patients (23%). Of the 109 patients with endoscopically suspected Barrett's esophagus, only 46 (42%) had the finding confirmed histologically. The sensitivity and specificity for the endoscopic diagnosis of Barrett's esophagus were 62% and 84%, respectively. A multivariate logistic regression analysis identified age (P = 0.0001; odds ratio per life-year 1.087; 95% CI, 1.046-1.139), male sex (P = 0.0020; OR 6.346; 95% CI, 2.094-22.314), and the number of biopsies (P = 0.0025; OR 1.661; 95% CI, 1.247-2.392) as factors associated with evidence of intestinal metaplasia on biopsy., Conclusion: The striking discrepancy between the endoscopic findings and the histological diagnosis may be due to the focal distribution of intestinal metaplasia. This emphasizes the importance of an adequate biopsy protocol. In addition, better methods of detecting focal islands of intestinal metaplasia that are not visible at conventional endoscopy are needed.
- Published
- 2005
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239. Core-modified expanded porphyrins with large third-order nonlinear optical response.
- Author
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Rath H, Sankar J, Prabhuraja V, Chandrashekar TK, Nag A, and Goswami D
- Subjects
- Molecular Structure, Optics and Photonics, Porphyrins chemistry
- Abstract
The third-order nonlinear optical response through measurement of two-photon absorption cross-sections (TPACS) for aromatic core-modified expanded porphyrin analogues by a femtosecond open aperture Z-scan method is reported. The values reported here are among the largest known so far in the literature for any organic molecules.
- Published
- 2005
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240. Figure-eight aromatic core-modified octaphyrins with six meso links: syntheses and structural characterization.
- Author
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Rath H, Sankar J, Prabhuraja V, Chandrashekar TK, Joshi BS, and Roy R
- Abstract
The synthesis and structural characterization of the first examples of aromatic core-modified figure-eight octaphyrins with six meso links and their formation with and without acid catalysts are highlighted.
- Published
- 2005
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241. Syntheses of core-modified corroles by three different [3 + 1] methodologies.
- Author
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Sankar J, Rath H, PrabhuRaja V, Chandrashekar TK, and Vittal JJ
- Abstract
Three new methods for syntheses of modified oxa corroles bearing one meso free carbon in reasonably good yields are reported. The formation of the meso carbon bridge and the direct pyrrole-pyrrole linkage occur in a single step by a simple condensation and coupling with TFA as a catalyst with appropriate precursors. The reactions are optimized with different conditions by varying the meso substituents, acid catalyst concentration, and the nature of the solvent to afford corroles in good yields.
- Published
- 2004
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242. Core-modified hexaphyrins; characterization of two- and four-ring inverted 26 pi aromatic macrocycles.
- Author
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Rath H, Anand VG, Sankar J, Venkatraman S, Chandrashekar TK, Joshi BS, Khetrapal CL, Schilde U, and Senge MO
- Abstract
[reaction: see text] Synthesis and structural characterization of aromatic core-modified 26 pi hexaphyrin analogues are reported.
- Published
- 2003
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243. meso-substituted aromatic 34pi core-modified octaphyrins: syntheses, characterization and anion binding properties.
- Author
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Anand VG, Venkatraman S, Rath H, Chandrashekar TK, Teng W, and Ruhlandt-Senge K
- Abstract
Modified octaphyrins with 34pi electrons have been synthesized and characterized following a simple synthetic methodology. An acid-catalyzed alpha,alpha coupling of tetrapyrranes containing furan, thiophene and selenophene rings resulted in the formation of the respective octaphyrins in relatively good yield. Solution studies by (1)H NMR and 2D NMR methods and single crystal Xray structural characterization reveal an almost flat structure with two heterocyclic rings inverted. Specifically, in 14 two selenophene rings (one on each biselenophene unit) are inverted while in 15 two furan rings (one on each bifuran unit) are inverted when the meso substituent are mesityl groups. On changing the mesityl substituent to m-xylyl group as in 19, the location of ring inversion shifts to pyrrole rings (one on each bipyrrole unit) indicating the dependence of structure on the meso substituents. UV/Vis studies, both in freebase and protonated forms reveal typical porphyrinic character and the aromatic nature of the octaphyrins. The Deltadelta values evaluated by (1)H NMR spectroscopy also support their aromatic nature. The protonated forms of octaphyrins bind TFA anion in a 1:2 ratio. The TFA anions are located one above and below the plane of the octaphyrin macrocycle and they are held by weak electrostatic NH-O interactions similar to that observed for protonated rubyrins. However, in the present case, there is an additional non-electrostatic CH-O interaction involving beta-CH of the inverted heterocyclic ring and the carbonyl oxygen of the TFA. Furthermore, inter molecular interactions between the Cbond;H of the meso-mesityl group and the fluorine of CF(3) group of bound TFA leads to the formation of one-dimensional supramolecular arrays with interplanar distance of 13 A between two octaphyrins.
- Published
- 2003
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244. Modified corroles with one meso-free carbon: synthesis and characterization.
- Author
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Sankar J, Anand VG, Venkatraman S, Rath H, and Chandrashekar TK
- Abstract
[reaction: see text] Synthesis of mono meso-free modified corroles by a [3+1] methodology is reported.
- Published
- 2002
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245. First structural characterization of core modified 10,15-meso aryl azuliporphyrins: observation of C-H...pi interaction between pyrrole beta-CH and mesityl ring.
- Author
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Venkatraman S, Anand VG, PrabhuRaja V, Rath H, Sankar J, Chandrashekar TK, Teng W, and Senge KR
- Abstract
First successful syntheses and structural characterization of new core modified meso aryl azuliporphyrins by a simple [3 + 1] methodology are reported.
- Published
- 2002
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246. Lisofylline and lysophospholipids ameliorate experimental colitis in rats.
- Author
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Sturm A, Zeeh J, Sudermann T, Rath H, Gerken G, and Dignass AU
- Subjects
- Administration, Topical, Animals, Anti-Inflammatory Agents, Non-Steroidal administration & dosage, Colitis chemically induced, Ethanol, Lysophospholipids administration & dosage, Male, Pentoxifylline administration & dosage, Rats, Rats, Sprague-Dawley, Trinitrobenzenesulfonic Acid, Anti-Inflammatory Agents, Non-Steroidal therapeutic use, Colitis prevention & control, Lysophospholipids therapeutic use, Pentoxifylline analogs & derivatives, Pentoxifylline therapeutic use
- Abstract
Background: Intestinal inflammatory processes initiate a chain reaction in which membrane-bound lipids generate eicosanoids and phospholipids. Bioactive lipid mediators play a pivotal role in the pathogenesis of intestinal inflammation and colonic mucosa from patients with inflammatory bowel disease contains high levels of phospholipids. Therefore, we investigated the effects of lysophosphatidic acid and lysophosphatidylethanolamine, two natural occurring phospholipids and lisofylline, which decreases lipid peroxidation, in an in-vivo model of intestinal inflammation., Methods: Colitis was induced by rectal administration of ethanol and trinitrobenzene sulfonic acid in rats. Rats were treated once daily with either lysophosphatidic acid or lysophosphatidylethanolamine rectally or twice daily intraperitoneally with lisofylline following induction of colitis. Rats were sacrificed after 7 days and the effect of lysophosphatidic acid, lysophosphatidylethanolamine, and lisofylline on colonic damage and inflammation were assessed using standardized macroscopical and histological injury scores., Results: Treatment with lysophosphatidic acid, lysophosphatidylethanolamine, and lisofylline significantly reduced the degree of inflammation and necrosis in the distal colon compared to control rats. In addition, the weight loss was significantly less in the treatment groups compared to controls. Histological studies revealed a significant reduction of epithelial damage and colonic inflammation., Conclusion: The administration of anti-inflammatory lysophospholipids and suppression of proinflammatory lipid metabolites by lisofylline may provide new approaches to ameliorate intestinal inflammation., (Copyright 2002 S. Karger AG, Basel)
- Published
- 2002
- Full Text
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247. [Chronic, pseudocystically altered splenic hematoma as the cause of left-sided chest pain: successful therapy using alcohol instillations].
- Author
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Rogler G, Völk M, Strotzer M, Herfarth H, Rath H, Schölmerich J, and Lock G
- Subjects
- Adult, Biopsy, Drainage, Hematoma diagnosis, Hematoma therapy, Humans, Instillation, Drug, Male, Recurrence, Spleen diagnostic imaging, Spleen pathology, Splenic Diseases diagnosis, Splenic Diseases therapy, Tomography, X-Ray Computed, Ultrasonography, Chest Pain etiology, Ethanol administration & dosage, Hematoma complications, Splenic Diseases complications
- Abstract
History and Clinical Findings: A 26-year-old man was admitted urgently because of breathing-related pain in the left thorax. This pain had started 3 months before, but had at first improved spontaneously. He had lost 13 kg during those weeks and had no recollection of any injury. Physical examination was unremarkable except for slight pain on upper-abdominal pressure and a palpably enlarged spleen., Investigations: All laboratory tests were normal, including the Quick value (100%), partial thromboplastin time (38 sec) and hemoglobin (14.2 g/dl). Chest radiogram showed a high left diaphragm. Abdominal sonography revealed a 12 x 10 cm moderately echogenic tumour in the spleen, extending from the splenic hilus to the upper splenic pole. Contrast-enhanced computed tomography demonstrated a hypodense tumour from which 300 ml of old blood were removed by needle puncture. Biopsy of the wall of the haematoma revealed pseudocystic transformation., Treatment and Course: The pseudocyst again filled with blood in a few days. A drain was inserted and remained for 32 days. Six installations of alcohol achieved complete obliteration of the cystic haematoma, which did not recur., Conclusion: Splenic haematoma should be considered in the differential diagnosis of pain in the lower left thorax, even in the absence of a history of injury. Sonographically such a haematoma my imitate a solid tumor. Obliteration of the cavity by alcohol installation can be a successful alternative to surgical treatment.
- Published
- 1998
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248. Autonomic and sensorimotor neuropathy in patients with systemic lupus erythematosus and systemic sclerosis.
- Author
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Straub RH, Zeuner M, Lock G, Rath H, Hein R, Schölmerich J, and Lang B
- Subjects
- Adult, Aged, Cardiovascular System innervation, Female, Humans, Male, Middle Aged, Prevalence, Pupil Disorders physiopathology, Autonomic Nervous System Diseases complications, Autonomic Nervous System Diseases pathology, Lupus Erythematosus, Systemic complications, Lupus Erythematosus, Systemic pathology, Scleroderma, Systemic complications, Scleroderma, Systemic pathology
- Abstract
Objective: To determine and compare the prevalence and degree of autonomic (ANP) and sensorimotor neuropathy (SNP) in patients with systemic lupus erythematosus (SLE) and systemic sclerosis (SSc)., Methods: Thirty-one patients with SLE and 19 with SSc were investigated. Pupillary ANP was assessed by pupillometry, cardiovascular ANP using a standardized test battery, and SNP by a standardized clinical examination., Results: In patients with SLE (SSc), 26% (10.5%) had a pathological pupillary latency time and 6.5% (13.7%) had an abnormal maximal pupillary area (p for the difference between latency time and maximal pupillary area in SLE = 0.040). Thus, patients with SLE had more often lesions of the pupillary parasympathetic portion of the autonomic nervous system. Overall prevalence of ANP was not different between the 2 groups; 29.0% in SLE and 21.1% in SSc for pupillary ANP and 9.7 and 15.7% for cardiovascular ANP, respectively. Overall prevalence of SNP was 6.5% in SLE and 21.1% in SSc. Disease activity was correlated with ANP (p = 0.008) and SNP (p = 0.020) in SLE. Kidney involvement was associated with more severe ANP in patients with SSc (p = 0.031). Duration of the disease did not correlate with any type of neuropathy., Conclusion: ANP and SNP are often present in SLE and SSc. SLE and SSc differ in the pattern of ANP and SNP, which indicates that different structures and neuropathogenic mechanisms may be involved. Patients with SLE had severe pupillary ANP, probably a sign of central nervous system involvement.
- Published
- 1996
249. [Hepatobiliary diseases in Crohn disease and ulcerative colitis].
- Author
-
Lock G, Holstege A, Rath H, and Schölmerich J
- Subjects
- Biliary Tract Diseases therapy, Biliary Tract Neoplasms etiology, Biliary Tract Neoplasms therapy, Colitis, Ulcerative therapy, Crohn Disease therapy, Humans, Liver Diseases therapy, Liver Neoplasms etiology, Liver Neoplasms therapy, Risk Factors, Biliary Tract Diseases etiology, Colitis, Ulcerative complications, Crohn Disease complications, Liver Diseases etiology
- Published
- 1994
250. [Bile acid reflux following stomach surgery on rats (author's transl)].
- Author
-
Hellerer O, Rath H, Falter E, and Holle F
- Subjects
- Animals, Bile Acids and Salts metabolism, Humans, Male, Postoperative Complications, Pylorus surgery, Rats, Bile Reflux etiology, Biliary Tract Diseases etiology, Stomach surgery
- Abstract
Using rats in a standardized animal experiment, the extent of duodenogastric reflux was studied eight months postoperatively following SPV with and without pyloroplasty. The reflux was determined by enzymatically testing the concentration of bile acid secretion withdrawn from the stomach intraoperatively. Serving as comparison were laparotomies, simple pyloroplasties, and the obligatory reflux models: resection after BII without enteroanastomosis. After SPV with and without pyloroplasty, the extent of duodenogastric reflux was less than in the control group. Specimens with simple pyloroplasty displayed a significantly greater reflux. The BII group had fivefold higher reflux than the control group. Since pyloroplasty can be considered a drainage operation, there is no retention of food particles in the stomach of the rat following SPV--an occurrence expected after SPV without pyloroplasty. However, due to the retarded stomach motility, the thickened chyme tends to linger at the opening of the stomach, thus reducing the duodenogastric reflux. According to our investigations, an increased duodenogastric reflux following SPV with or without pyloroplasty does not induce changes in the mucosa of the stomach.
- Published
- 1982
- Full Text
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