201. Abasic pivot substitution harnesses target specificity of RNA interference
- Author
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Heeyoung Seok, Sung Wook Chi, Wooje Lee, Yong Seung Lee, Dong Ha Lee, Hye Sook Lee, Juyoung Ham, Jin Seon Yoo, Eun Sook Jang, and Emilia Moonkyung Youm
- Subjects
Small interfering RNA ,Base pair ,Immunoblotting ,General Physics and Astronomy ,Biology ,General Biochemistry, Genetics and Molecular Biology ,Article ,Cell Line ,Mice ,RNA interference ,Cell Line, Tumor ,Gene silencing ,Animals ,Humans ,RNA, Small Interfering ,Psychological repression ,Base Pairing ,Multidisciplinary ,Reverse Transcriptase Polymerase Chain Reaction ,Serine Endopeptidases ,Gene targeting ,RNA ,General Chemistry ,Hep G2 Cells ,Argonaute ,Blotting, Northern ,Cell biology ,MicroRNAs ,RNAi Therapeutics ,Biochemistry ,Argonaute Proteins ,Gene Targeting ,RNA Interference ,Proprotein Convertases ,Proprotein Convertase 9 ,HeLa Cells - Abstract
Gene silencing via RNA interference inadvertently represses hundreds of off-target transcripts. Because small interfering RNAs (siRNAs) can function as microRNAs, avoiding miRNA-like off-target repression is a major challenge. Functional miRNA–target interactions are known to pre-require transitional nucleation, base pairs from position 2 to the pivot (position 6). Here, by substituting nucleotide in pivot with abasic spacers, which prevent base pairing and alleviate steric hindrance, we eliminate miRNA-like off-target repression while preserving on-target activity at ∼80–100%. Specifically, miR-124 containing dSpacer pivot substitution (6pi) loses seed-mediated transcriptome-wide target interactions, repression activity and biological function, whereas other conventional modifications are ineffective. Application of 6pi allows PCSK9 siRNA to efficiently lower plasma cholesterol concentration in vivo, and abolish potentially deleterious off-target phenotypes. The smallest spacer, C3, also shows the same improvement in target specificity. Abasic pivot substitution serves as a general means to harness the specificity of siRNA experiments and therapeutic applications., RNA interference inadvertently represses off-target transcripts. Here, Lee et al. report that substituting nucleotide in position 6 of the seed region of the small interfering RNAs with abasic spacers can significantly decrease miRNA-like off-target repression while preserving on-target activity.
- Published
- 2015