621 results on '"DOGAN, I."'
Search Results
202. Stable hemiaminals from axially chiral pyridine compounds
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Senel Teke Tuncel, Ilke Demir, Safiye Sağ Erdem, Ilknur Dogan, and Tuncel S. T., Demir I., ERDEM S., Dogan I.
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Temel Bilimler (SCI) ,Mühendislik ,ENGINEERING ,stable hemiami ,Sağlık Bilimleri ,Biochemistry ,Physical Chemistry ,Organik Kimya ,Kimya ,Analytical Chemistry ,CHEMISTRY ,Biyokimya ,BİYOKİMYA VE MOLEKÜLER BİYOLOJİ ,Drug Discovery ,Kimya Mühendisliği ve Teknolojisi ,FARMAKOLOJİ VE ECZACILIK ,MÜHENDİSLİK, KİMYASAL ,PHARMACOLOGY & PHARMACY ,Spectroscopy ,PHARMACOLOGY & TOXICOLOGY ,İlaç Keşfi ,intramolecular hydrogen bonding ,Temel Bilimler ,Basic Pharmaceutics Sciences ,Spektroskopi ,Fizikokimya ,Life Sciences ,CHEMISTRY, ORGANIC ,Kataliz ,KİMYA, ANALİTİK ,MOLECULAR BIOLOGY & GENETICS ,Farmakoloji ve Toksikoloji ,Natural Sciences (SCI) ,Physical Sciences ,pyridine compounds ,Engineering and Technology ,Natural Sciences ,BIOCHEMISTRY & MOLECULAR BIOLOGY ,Sitogenetik ,2-iminothiazolidin-4-ol ,axially chiral hemiaminal ,Farmakoloji ,Life Sciences (LIFE) ,Molecular Biology and Genetics ,Chemical Engineering and Technology ,Catalysis ,CHEMISTRY, ANALYTICAL ,SPEKTROSKOPİ ,KİMYA, ORGANİK ,Yaşam Bilimleri ,Health Sciences ,Biyoinorganik Kimya ,Cytogenetic ,Engineering, Computing & Technology (ENG) ,Eczacılık ,Bioinorganic Chemistry ,Moleküler Biyoloji ve Genetik ,stable hemiaminal ,Pharmacology ,Organic Chemistry ,Mühendislik, Bilişim ve Teknoloji (ENG) ,Pharmacology and Therapeutics ,Temel Eczacılık Bilimleri ,Fizik Bilimleri ,Yaşam Bilimleri (LIFE) ,Analitik Kimya ,Mühendislik ve Teknoloji ,ENGINEERING, CHEMICAL - Abstract
© 2023 Wiley Periodicals LLC.In this study, we have synthesized a series of 3-(pyridin-2-yl)-2-(pyridin-2-ylimino)thiazolidin-4-ol derivatives regioselectively from 2-iminothiazolidin-4-ones using LiAlH4 at room temperature. Due to the presence of the restricted rotation around the N3-Caryl single bond, the formation of M/P isomers was observed. The OH group of the hemiaminal was found to orient itself on the same side with pyridyl nitrogen during this restricted rotation to form an intramolecular hydrogen bond, which was demonstrated by the computational DFT study. This orientation presumably inhibited the occurrence of dehydration and stabilized the molecule.
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- 2023
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203. STMS markers related to Ascochyta blight resistance in chickpea
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ÖZYİĞİT, İBRAHİM İLKER, GENÇ, MUSTAFA, and Dogan I., ÖZYİĞİT İ. İ., GENÇ M., Tabanli F., Mart D., Yorgancilar O., Turkeri M., Atmaca E., Yorgancilar A.
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Ascochyta rabiei ,Cancer Research ,Aging ,Clinical Biochemistry ,Genel Biyokimya, Genetik ve Moleküler Biyoloji ,Sağlık Bilimleri ,Fundamental Medical Sciences ,Biochemistry ,BIOLOGY & BIOCHEMISTRY ,BIOPHYSICS ,Structural Biology ,RABIEI ,Biyokimya ,BİYOKİMYA VE MOLEKÜLER BİYOLOJİ ,Yaşlanma ,Drug Discovery ,Biyoloji ve Biyokimya ,Didymella rabiei ,İlaç Keşfi ,Moleküler Biyoloji ,Temel Bilimler ,Life Sciences ,Biyokimya (tıbbi) ,Biyokimya, Genetik ve Moleküler Biyoloji (çeşitli) ,Tıp ,MOLECULAR BIOLOGY & GENETICS ,Medicine ,Yield losses ,CICER-ARIETINUM L ,Natural Sciences ,BIOCHEMISTRY & MOLECULAR BIOLOGY ,Sitogenetik ,Temel Tıp Bilimleri ,Life Sciences (LIFE) ,Molecular Biology and Genetics ,QTLS ,Biyofizik ,Biochemistry, Genetics and Molecular Biology (miscellaneous) ,General Biochemistry, Genetics and Molecular Biology ,VALIDATION ,Yaşam Bilimleri ,Health Sciences ,Cytogenetic ,POPULATION-STRUCTURE ,Molecular Biology ,Moleküler Biyoloji ve Genetik ,BİYOFİZİK ,IDENTIFICATION ,Yapısal Biyoloji ,Biochemistry (medical) ,Molecular markers ,Cicer arietinum ,Klinik Biyokimya ,Yaşam Bilimleri (LIFE) ,Molecular breeding ,Kanser Araştırmaları - Abstract
Chickpea (Cicer arietinum L.) is one of the important legume crops and is cultivated large-scale throughout Turkiye as well as the world. Ascochyta blight, caused by the fungal phytopathogen Ascochyta rabiei, is the leading reason for the highest yield losses among the diseases known for chickpea. The pathogen exhibits high genetic diversity in Turkiye. Therefore, resistancy using Sequence Tagged Microsatellite Site (STMS) markers related with the genes that provide resistance against Ascochyta blight was investigated for the 205 chickpea breeding lines grown in different parts of Turkiye. The analysis for Ascochyta blight resistance was performed using Ta2, Ta146 and Ts54. It was demonstrated that Ta2, Ts54 and Ta146 were the STMS markers having distinguishable features for the detection of Ascochyta blight resistance and were shown to be used in credible fashion for the selection of resistant chickpea breeding lines.
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- 2023
204. Cotton Biotechnology: An Efficient Gene Transfer Protocol via Agrobacterium tumefaciens for a Greater Transgenic Recovery
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Ibrahim Ilker Ozyigit, Ilhan Dogan, Yilmaz Kaya, Kasim Bajrovic, Nermin Gozukirmizi, and ÖZYİĞİT İ. İ., Dogan I., Kaya Y., Bajrovic K., Gozukirmizi N.
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Materials Science (miscellaneous) ,GOSSYPIUM-HIRSUTUM L ,BARBADENSE ,Gossypium hirsutumL ,PLANT-REGENERATION ,ROOT-FORMATION ,MATERIALS SCIENCE ,meristematic shoot ,Textile Engineering and Technology ,SOMATIC EMBRYOGENESIS ,General Materials Science ,基因转移 ,Engineering, Computing & Technology (ENG) ,gene transfer ,印迹技 术 ,blotting techniques ,Mühendislik, Bilişim ve Teknoloji (ENG) ,MALZEME BİLİMİ, TEKSTİL ,TRANSFORMATION ,CULTIVARS ,GENOTYPE ,MATERIALS SCIENCE, TEXTILES ,TISSUE ,Physical Sciences ,SHOOT ,Engineering and Technology ,Gossypium hirsutum L ,Mühendislik ve Teknoloji ,Tekstil Mühendisliği ve Teknolojisi ,分生芽 ,Malzeme Bilimi - Abstract
Due to its economic worth, cotton (Gossypium hirsutum L.) is grown in almost 70 countries and provides income for more than 250 million people. Therefore, producing cotton with having some desired characteristics that includes extended biotic and abiotic stress tolerance, improved fiber quality, promoted nutritional content and increased yield is the main objective for cotton biotechnology. To achieve this goal, many tissue culture and gene transfer techniques are being developed and used throughout the years. As applications for the gene transfer, the Agrobacterium-mediated, particle bombardment and pollen tube pathway-mediated methods are most successfully used and in conjunction with this, meristematic shoot tips as explants are efficiently utilized in gene transfer methods. In this study, the main objective was to report an efficient protocol for a greater recovery of transgenic cotton plant using Agrobacterium tumefaciens-mediated transformation. For this, one of the cotton strains (Cukurova 1518) cultivated widely in Turkey was chosen and meristematic shoot tips as explant sources, and GFP and NPTII genes as reporter and marker genes were used, respectively. The effective post co-cultivation conditions were provided via using the selection regime in vitro. Finally, the current results showed highly reproducible protocol developed could be used to produce transgenic cotton plants expressing desired traits or can be utilized as a model system to study the expression of particular genes. 由于其经济价值, 棉花 (Gossypium hirsutum L.) 在近70个国家种植, 为2.5亿 多人提供收入. 因此, 棉花生物技术的主要目标是生产具有某些期望特性的 棉花, 包括延长生物和非生物胁迫耐受性、改善纤维品质、提高营养含量 和增加产量. 为了实现这一目标, 多年来, 许多组织培养和基因转移技术被 开发和使用. 作为基因转移的应用, 农杆菌介导、粒子轰击和花粉管通道介 导的方法被最成功地使用, 与此相结合, 分生茎尖作为外植体被有效地用于 基因转移方法. 在这项研究中, 主要目的是报告一种利用根癌农杆菌介导的 转化更有效地恢复转基因棉花植株的方案. 为此, 选择在土耳其广泛种植的 棉花品系之- (Cukurova 1518), 分生茎尖作为外植体来源, GFP和NPTII基因分 别作为报告基因和标记基因. 通过体外筛选机制提供了有效的共培养后条 件. 最后, 目前的结果表明, 所开发的高重复性方案可用于生产表达所需性 状的转基因棉花植株, 或用作研究特定基因表达的模型系统.
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- 2022
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205. Evaluation of Genetic Variation Observed in Barley (Hordeum vulgare L.) Varieties that are widely Cultivated in Kyrgyzstan
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ÖZYİĞİT, İBRAHİM İLKER and Özyiğit İ. İ., Hocaoglu-Ozyigit A., Uras M., Dogan I., Solak A., Gozukirmizi N., Karipova A., Chekirov K., Kurmanbekova G., Usubaliev B.
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Multidisipliner ,NATURAL SCIENCES, GENERAL ,Multidisciplinary ,MULTIDISCIPLINARY SCIENCES ,Temel Bilimler ,Natural Sciences (SCI) ,Temel Bilimler (SCI) ,Doğa Bilimleri Genel ,ÇOK DİSİPLİNLİ BİLİMLER ,Natural Sciences - Published
- 2022
206. The Evaluation Report for the Losses Occurred in the Nearby Agricultural Fields Due to the Operation of the Cement Factory that is Established in Kant
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ÖZYİĞİT, İBRAHİM İLKER and Özyiğit İ. İ., Cusupova B., Dogan I., Hocaoglu-Ozyigit A., Yalcin I., Chekirov K., Omurzakova N.
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Multidisipliner ,NATURAL SCIENCES, GENERAL ,Multidisciplinary ,MULTIDISCIPLINARY SCIENCES ,Temel Bilimler ,Natural Sciences (SCI) ,Temel Bilimler (SCI) ,Doğa Bilimleri Genel ,ÇOK DİSİPLİNLİ BİLİMLER ,Natural Sciences - Published
- 2022
207. Investigation on genetic diversity and phylogenetic relations of astropecten irregularis (pennant, 1777) populations obtained from the sea of Marmara
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ÖZYİĞİT, İBRAHİM İLKER and Özyiğit İ. İ., Ucar B., Hocaoglu-Ozyigit A., Dogan I.
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Multidisipliner ,NATURAL SCIENCES, GENERAL ,Multidisciplinary ,MULTIDISCIPLINARY SCIENCES ,Temel Bilimler ,Natural Sciences (SCI) ,Temel Bilimler (SCI) ,Doğa Bilimleri Genel ,ÇOK DİSİPLİNLİ BİLİMLER ,Natural Sciences - Published
- 2022
208. Examination of the Genetic Characteristics of the Wheat (Triticum aestivum L.) Varieties Cultivated in Kyrgyzystan
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ÖZYİĞİT, İBRAHİM İLKER and Özyiğit İ. İ., Hocaoglu-Ozyigit A., Dogan I., Solak A., Gozukirmizi N., Uras M., Seidakhmatova A., Karipova A., Chekirov K., Kurmanbekova G., et al.
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Multidisipliner ,NATURAL SCIENCES, GENERAL ,Multidisciplinary ,MULTIDISCIPLINARY SCIENCES ,Temel Bilimler ,Natural Sciences (SCI) ,Temel Bilimler (SCI) ,Doğa Bilimleri Genel ,ÇOK DİSİPLİNLİ BİLİMLER ,Natural Sciences - Published
- 2022
209. Human Health Risk Assessment for Heavy Metal and Trace Element Accumulations Found in Medicinal Plant Flowers that are used Commonly in Southern Turkey as Remedies
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ÖZYİĞİT, İBRAHİM İLKER and Özyiğit İ. İ., Karahan F., Yalcin I., Hocaoglu-Ozyigit A., Dogan I., Ilcim A.
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Multidisipliner ,NATURAL SCIENCES, GENERAL ,Multidisciplinary ,MULTIDISCIPLINARY SCIENCES ,Temel Bilimler ,Natural Sciences (SCI) ,Temel Bilimler (SCI) ,Doğa Bilimleri Genel ,ÇOK DİSİPLİNLİ BİLİMLER ,Natural Sciences - Published
- 2022
210. A Case Study Reporting Heavy Metal Pollution along Alamedin River in Bishkek City
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ÖZYİĞİT, İBRAHİM İLKER and Özyiğit İ. İ., Dogan I., Hocaoglu-Ozyigit A., Yalcin I., Chekirov K.
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Multidisipliner ,NATURAL SCIENCES, GENERAL ,Multidisciplinary ,MULTIDISCIPLINARY SCIENCES ,Temel Bilimler ,Natural Sciences (SCI) ,Temel Bilimler (SCI) ,Doğa Bilimleri Genel ,ÇOK DİSİPLİNLİ BİLİMLER ,Natural Sciences - Published
- 2022
211. Determination of phylogenetic relationships of the registered wheat and barley varieties cultivated in Kyrgyzstan by using trnL-trnF intergenic spacer regions
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ÖZYİĞİT, İBRAHİM İLKER and Özyiğit İ. İ., Hocaoglu-Ozyigit A., Uras M., Dogan I., Solak A., Gozukirmizi N., Karipova A., Chekirov K., Kurmanbekova G., Usubaliev B.
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Multidisipliner ,NATURAL SCIENCES, GENERAL ,Multidisciplinary ,MULTIDISCIPLINARY SCIENCES ,Temel Bilimler ,Natural Sciences (SCI) ,Temel Bilimler (SCI) ,Doğa Bilimleri Genel ,ÇOK DİSİPLİNLİ BİLİMLER ,Natural Sciences - Published
- 2022
212. Investigation of the Effects of Cement Dust Pollution on the Environment using Biomonitor Organism
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ÖZYİĞİT, İBRAHİM İLKER and Özyiğit İ. İ., Beysenova M., Cherikov K., Omurzakova N., Hocaoglu-Ozyigit A., Dogan I., Yalcin I.
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Multidisipliner ,Multidisciplinary ,MULTIDISCIPLINARY SCIENCES ,Temel Bilimler ,Temel Bilimler (SCI) ,Doğa Bilimleri Genel ,Heavy Metal Pollution ,ÇOK DİSİPLİNLİ BİLİMLER ,Cement Dust ,Kant ,NATURAL SCIENCES, GENERAL ,Natural Sciences (SCI) ,Biomonitoring ,Phragmites australis ,Natural Sciences - Abstract
This research was carried out in the vicinity of Kant Cement Plant located in Issyk-Ata district, Cuy region of Kyrgyzstan. Kant Cement Plant produces approximately 600,000-700,000 tonnes of cement per year. Because of the cement production, a large amount of cement dust release containing some heavy metals and other toxic substances occurs in the nearby environment. The aim of our research was to investigate the negative effects of the cement dust spreading around on living organisms. In this research, the reed plant (Phragmites australis L.) was used as a study material to determine the rate pollution observed nearby Kant via the detection of heavy metal and nutrient element contents (Al, Ca, Cd, Cr, Cu, Fe, K, Mg, Mn, Na, Ni, Pb and Zn) of the collected plant and co-located soil samples using ICP-OES. Also, the total chlorophyll contents in the leaves of the plant samples was measured using CCM-200 plus (Opti-Sciences). The lowest and highest heavy metal and mineral element contents of the plant samples (in mg kg1 ) were found to be as: 119.30 (in stems) and 3908.11 (in roots) for Al in stations 9 and 6; 12.52 (in stems) and 47.88 (in unwashed leaves) for B in control (1) and station 6; 3432.38 (in stems) and 10120.64 (in roots) for Ca in control (1) and station 6; 125.95 (in washed leaves) and 87.38 (in stems) for Cd in control (1) and station 6; 6.74 (in stems) and 24.56 (in roots) for Cr in control (1) and station 6; 3.92 (in stems) and 28.13 (in unwashed leaves) for Cu in control (1) and station 6; 303.82 (in stems) and 1100.86 (in unwashed leaves) for Fe in control (1) and station 6; 5334.55 (in stems) and 23789.68 (in unwashed leaves) for K in control (1) and station 6; 692.44 (in stems) and 3352.71 (in unwashed leaves) for Mg in control (1) and station 6; 33.94 (in stems) and 391.22 (in roots) for Mn in control (1) and station 6; 162.30 (in stems) and 709.03 (in unwashed leaves) for Na in control (1) and station 6; 3.5 (in stems) and 19.61 (in roots) for Ni in control (1) and station 6; 2.25 (in stems) and 20.41 (in unwashed leaves) for Pb in control (1) and station 6; and 35.94 (in stems) and 147.65 (in roots) for Zn in control (1) and station 6, respectively. The lowest and highest heavy metal and mineral element contents of the soil samples (in mg kg-1 ) were found to be as: 30034.07 and 38334.45 for Al in stations 9 and 6; 39.61 and 80.32 for B in control (1) and station 6; 11832.33 and 23922.33 for Ca in control (1) and station 6; 165.38 and 1457.8 for Cd in control (1) and station 6; 20.79 and 42.29 for Cr in control (1) and station 6; 14.8 and 45.84 for Cu in control (1) and station 6; 17390.18 and 35158.99 for Fe in control (1) and station 6; 10230.83 and 20684.6 for K in control (1) and station 6; 4356.34 and 8807.68 for Mg in control (1) and station 6; 598.38 and 1210.04 for Mn in control (1) and station 6; 1163.76 and 2353.09 for Na in control (1) and station 6; 27.68 and 56.16 for Ni in control (1) and station 6; 18.47 and 77.94 for Pb in control (1) and station 6; and 136.29 and 275.73 for Zn in control (1) and station 6, respectively. When the results obtained from our work were compared with the controls, it showed that the Cement plant in Kant cause pollution in nearby environment by the way of releasing heavy metals including Cd, Cr, Pb and Ni (partially). Kyrgyzstan is a country recently showing an increasing growth trend. As a result of high rate of urbanization following of economic and industrial development, Kyrgyzstan encounters with the problems related with pollution. From our work, the recommendation to the local authorities to take necessary precautions before the pollution reaching dangerous levels. By our work, the recommendation would be to the local authorities to take necessary precautions before the pollution reaching dangerous levels. Keywords: Phragmites australis, Biomonitoring, Heavy Metal Pollution, Cement Dust, Kant
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- 2022
213. Progression characteristics of the European Friedreich's Ataxia Consortium for Translational Studies (EFACTS): a 4-year cohort study
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Thomas Klopstock, M. Fichera, Francisco Javier Rodríguez de Rivera Garrido, Caterina Mariotti, Almut Turid Bischoff, Claudia Stendel, Christian Hohenfeld, Alexandra Durr, Anna Castaldo, Ilaria Giordano, Stefanie N. Hayer, Alessia Mongelli, Marie Lorraine Monin, Massimo Pandolfo, Kathrin Reetz, Katarina Manso, Gessica Vasco, Mar O'Callaghan, Nita Solanky, Matthias Amprosi, Claire Ewenczyk, Florian Holtbernd, Wolfgang Nachbauer, Sylvia Boesch, Enrico Bertini, Francesc Palau, Cinzia Gellera, Elisabetta Indelicato, Florentine Radelfahr, Imis Dogan, Marianthi Breza, Ludger Schöls, Christian Rummey, Michael H Parkinson, Andreas Eigentler, Jörg B. Schulz, Lorenzo Nanetti, Claire Didszun, Paola Giunti, Gilbert Thomas-Black, Nikolina Brcina, Marie Biet, Ralf-Dieter Hilgers, Robyn Labrum, Thomas Klockgether, Myriam Rai, Georgios Koutsis, Reetz, K, Dogan, I, Hilgers, R, Giunti, P, Parkinson, M, Mariotti, C, Nanetti, L, Durr, A, Ewenczyk, C, Boesch, S, Nachbauer, W, Klopstock, T, Stendel, C, Rodriguez de Rivera Garrido, F, Rummey, C, Schols, L, Hayer, S, Klockgether, T, Giordano, I, Didszun, C, Rai, M, Pandolfo, M, Schulz, J, Labrum, R, Thomas-Black, G, Manso, K, Solanky, N, Gellera, C, Mongelli, A, Castaldo, A, Fichera, M, Palau, F, O'Callaghan, M, Biet, M, Monin, M, Eigentler, A, Indelicato, E, Amprosi, M, Radelfahr, F, Bischoff, A, Holtbernd, F, Brcina, N, Hohenfeld, C, Koutsis, G, Breza, M, Bertini, E, and Vasco, G
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Registrie ,0301 basic medicine ,Adult ,Male ,Pediatrics ,medicine.medical_specialty ,Ataxia ,Time Factors ,Time Factor ,pathology [Friedreich Ataxia] ,physiopathology [Friedreich Ataxia] ,Late onset ,Cohort Studies ,03 medical and health sciences ,Young Adult ,0302 clinical medicine ,Activities of Daily Living ,medicine ,Humans ,ddc:610 ,Registries ,Mobility Limitation ,business.industry ,Middle Aged ,complications [Friedreich Ataxia] ,Clinical trial ,Europe ,030104 developmental biology ,Friedreich Ataxia ,Ambulatory ,Cohort ,Disease Progression ,Observational study ,Female ,Neurology (clinical) ,Cohort Studie ,Age of onset ,medicine.symptom ,business ,030217 neurology & neurosurgery ,Human ,Cohort study - Abstract
Summary Background The European Friedreich's Ataxia Consortium for Translational Studies (EFACTS) investigates the natural history of Friedreich's ataxia. We aimed to assess progression characteristics and to identify patient groups with differential progression rates based on longitudinal 4-year data to inform upcoming clinical trials in Friedreich's ataxia. Methods EFACTS is a prospective, observational cohort study based on an ongoing and open-ended registry. Patients with genetically confirmed Friedreich's ataxia were seen annually at 11 clinical centres in seven European countries (Austria, Belgium, France, Germany, Italy, Spain, and the UK). Data from baseline to 4-year follow-up were included in the current analysis. Our primary endpoints were the Scale for the Assessment and Rating of Ataxia (SARA) and the activities of daily living (ADL). Linear mixed-effect models were used to analyse annual disease progression for the entire cohort and subgroups defined by age of onset and ambulatory abilities. Power calculations were done for potential trial designs. This study is registered with ClinicalTrials.gov , NCT02069509 . Findings Between Sept 15, 2010, and Nov 20, 2018, of 914 individuals assessed for eligibility, 602 patients were included. Of these, 552 (92%) patients contributed data with at least one follow-up visit. Annual progression rate for SARA was 0·82 points (SE 0·05) in the overall cohort, and higher in patients who were ambulatory (1·12 [0·07]) than non-ambulatory (0·50 [0·07]). ADL worsened by 0·93 (SE 0·05) points per year in the entire cohort, with similar progression rates in patients who were ambulatory (0·94 [0·07]) and non-ambulatory (0·91 [0·08]). Although both SARA and ADL showed slightly greater worsening in patients with typical onset (symptom onset at ≤24 years) than those with late onset (symptom onset ≥25 years), differences in progression slopes were not significant. For a 2-year parallel-group trial, 230 (115 per group) patients would be required to detect a 50% reduction in SARA progression at 80% power: 118 (59 per group) if only individuals who are ambulatory are included. With ADL as the primary outcome, 190 (95 per group) patients with Friedreich's ataxia would be needed, and fewer patients would be required if only individuals with early-onset are included. Interpretation Our findings for stage-dependent progression rates have important implications for clinicians and researchers, as they provide reliable outcome measures to monitor disease progression, and enable tailored sample size calculation to guide upcoming clinical trial designs in Friedreich's ataxia. Funding European Commission, Voyager Therapeutics, and EuroAtaxia.
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- 2021
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214. Brain Structure and Degeneration Staging in Friedreich Ataxia: Magnetic Resonance Imaging Volumetrics from the ENIGMA‐Ataxia Working Group
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Caterina Tonon, Thiago Junqueira Ribeiro de Rezende, Christophe Lenglet, Wolfgang Nachbauer, Jörg B. Schulz, Kathrin Reetz, Christoph Scherfler, James M. Joers, Francesco Saccà, Gary F. Egan, Carlos R. Hernandez-Castillo, Marinela Vavla, Dagmar Timmann, Mario Mascalchi, Alberto R. M. Martinez, Sophia Göricke, Chiara Marzi, Paul M. Thompson, Imis Dogan, Sirio Cocozza, Giuseppe Pontillo, Stefania Evangelisti, David Neil Manners, Louise A. Corben, Pierre-Gilles Henry, Laura Ludovica Gramegna, Diane Hutter, Filippo Arrigoni, Ian H. Harding, Raffaele Lodi, Stefano Diciotti, Chiara Pane, Sophia I. Thomopoulos, Marcondes C. França, Andreas Deistung, Neda Jahanshad, Sandro Romanzetti, Pramod Kumar Pisharady, Andrea Martinuzzi, Ambra Stefani, Stefania Tirelli, Sylvia Boesch, Martin B. Delatycki, Sidhant Chopra, Denis Peruzzo, Arturo Brunetti, Nellie Georgiou-Karistianis, Claudia Testa, Harding I.H., Chopra S., Arrigoni F., Boesch S., Brunetti A., Cocozza S., Corben L.A., Deistung A., Delatycki M., Diciotti S., Dogan I., Evangelisti S., Franca M.C., Goricke S.L., Georgiou-Karistianis N., Gramegna L.L., Henry P.-G., Hernandez-Castillo C.R., Hutter D., Jahanshad N., Joers J.M., Lenglet C., Lodi R., Manners D.N., Martinez A.R.M., Martinuzzi A., Marzi C., Mascalchi M., Nachbauer W., Pane C., Peruzzo D., Pisharady P.K., Pontillo G., Reetz K., Rezende T.J.R., Romanzetti S., Sacca F., Scherfler C., Schulz J.B., Stefani A., Testa C., Thomopoulos S.I., Timmann D., Tirelli S., Tonon C., Vavla M., Egan G.F., and Thompson P.M.
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Adult ,Male ,Cerebellum ,Ataxia ,Medizin ,Pyramidal Tracts ,Grey matter ,Young Adult ,Image Processing, Computer-Assisted ,Humans ,Medicine ,Pyramidal Tract ,ddc:610 ,Age of Onset ,business.industry ,Brain ,Voxel-based morphometry ,Middle Aged ,Spinal cord ,Magnetic Resonance Imaging ,Dentate nucleus ,medicine.anatomical_structure ,Neurology ,Friedreich Ataxia ,Brain size ,Disease Progression ,Female ,Neurology (clinical) ,Brainstem ,medicine.symptom ,business ,Neuroscience ,Human - Abstract
Objective: Friedreich ataxia (FRDA) is an inherited neurological disease defined by progressive movement incoordination. We undertook a comprehensive characterization of the spatial profile and progressive evolution of structural brain abnormalities in people with FRDA. Methods: A coordinated international analysis of regional brain volume using magnetic resonance imaging data charted the whole-brain profile, interindividual variability, and temporal staging of structural brain differences in 248 individuals with FRDA and 262 healthy controls. Results: The brainstem, dentate nucleus region, and superior and inferior cerebellar peduncles showed the greatest reductions in volume relative to controls (Cohen d= 1.5–2.6). Cerebellar gray matter alterations were most pronounced in lobules I–VI (d= 0.8), whereas cerebral differences occurred most prominently in precentral gyri (d= 0.6) and corticospinal tracts (d= 1.4). Earlier onset age predicted less volume in the motor cerebellum (rmax= 0.35) and peduncles (rmax= 0.36). Disease duration and severity correlated with volume deficits in the dentate nucleus region, brainstem, and superior/inferior cerebellar peduncles (rmax= −0.49); subgrouping showed these to be robust and early features of FRDA, and strong candidates for further biomarker validation. Cerebral white matter abnormalities, particularly in corticospinal pathways, emerge as intermediate disease features. Cerebellar and cerebral gray matter loss, principally targeting motor and sensory systems, preferentially manifests later in the disease course. Interpretation: FRDA is defined by an evolving spatial profile of neuroanatomical changes beyond primary pathology in the cerebellum and spinal cord, in line with its progressive clinical course. The design, interpretation, and generalization of research studies and clinical trials must consider neuroanatomical staging and associated interindividual variability in brain measures. ANN NEUROL 2021;90:570–583.
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- 2021
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215. Indoor Radon Measurement in Van
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Dogan, I [Yuzuncu Yil University, Faculty of Veterinary Medicine, Biochemistry Department, Van (Turkey)]
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- 2007
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216. Effects of short chain fatty acid (SCFA) supplementation on performance and egg characteristics of old breeder hens.
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Sengor, E., Yardimci, M., Cetingul, S., Bayram, I., Sahin, H., and Dogan, I.
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- *
FATTY acids , *EGGS , *HENS , *EGGSHELLS , *CALCIUM - Abstract
A study was conducted to determine the effect of supplementing the diet of breeder hens with a short-chain fatty acid (SCFA) premix, containing 509 g fatty acid salts/kg of which 285 g were calcium butyrate, on their eggshell characteristics and the hatching percentage of the eggs. One thousand six hundred 66-week old White Bovans laying breeder hens were used in this experiment. They were housed in eight identical pens, each containing 200 birds, and four pens were used per treatment. The SCFA premix was included at 1000 mg/kg in the treatment diet, and fed for a period of nine weeks. Responses were compared with an unsupplemented treatment. Supplementation started when the hens were 66 weeks old. From day 75 eggs were collected for the next seven weeks and the occurrence of cracked, dirty and misshapen eggs was recorded, and the hatching percentage of the eggs was determined. Eggshell strength was lower in eggs from the control (1.76 ± 0.05) than from the treatment group (2.07 ± 0.03). The percentage of eggs produced by the control group (68.6 ± 0.08) was significantly lower than that by the supplemented group (71.5 ± 0.15). Percentage of dirty, cracked and misshapen eggs, and the hatchability percentage of the control group (1.15 ± 0.03, 3.44 ± 0.05, 6.27 ± 0.03 and 88.93 ± 0.06, respectively) were also significantly lower than in the group receiving SCFA (0.47 ± 0.03, 2.21 ± 0.03, 3.81 ± 0.03 and 93.36 ± 0.05, respectively). It was concluded that dietary supplementation of SCFA to layer breeder hens from 66 weeks of age onwards improved eggshell strength, reduced the percentage of dirty, cracked and misshapen eggs and increased the hatching percentage of the eggs. The positive responses were suggested to be largely due to the butyrate in the SCFA. [ABSTRACT FROM AUTHOR]
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- 2007
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217. Is a Unilateral Surgical Approach Effective in Patients with Bilateral Leg Pain with Unilateral Lumbar Disc Herniation? A Prospective Nonrandomized Clinical and Surgical Study
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Murat Zaimoglu, Altan Demirel, Fatih Yakar, Cihan Kircil, Hasan Caglar Ugur, Yusuf Sukru Caglar, Melih Bozkurt, Melih Üçer, Batuhan Bakirarar, Gokmen Kahilogullari, Ihsan Dogan, Onur Ozgural, Cemil Kilinc, Umit Eroglu, Efe Guner, and Dogan, I., Department of Neurosurgery, Ankara University, School of Medicine, Ibni Sina Hospital, Ankara, Turkey -- Bozkurt, M., Department of Neurosurgery, Ankara University, School of Medicine, Ibni Sina Hospital, Ankara, Turkey -- Kahilogullari, G., Department of Neurosurgery, Ankara University, School of Medicine, Ibni Sina Hospital, Ankara, Turkey -- Yakar, F., Department of Neurosurgery, Ankara University, School of Medicine, Ibni Sina Hospital, Ankara, Turkey -- Zaimoglu, M., Department of Neurosurgery, Ankara University, School of Medicine, Ibni Sina Hospital, Ankara, Turkey -- Bakirarar, B., Department of Biostatistics, Ankara University School of Medicine, Ankara, Turkey -- Kircil, C., Department of Ortopedia and Traumatologia, Memorial Hospital, Ankara, Turkey -- Eroglu, U., Department of Neurosurgery, Ankara University, School of Medicine, Ibni Sina Hospital, Ankara, Turkey -- Ozgural, O., Department of Neurosurgery, Ankara University, School of Medicine, Ibni Sina Hospital, Ankara, Turkey -- Ucer, M., Istanbul Health Sciences University, Kanuni Sultan Suleyman Training and Research Hospital, Istanbul, Turkey -- Kilinc, C., Department of Neurosurgery, Ankara University, School of Medicine, Ibni Sina Hospital, Ankara, Turkey -- Demirel, A., Department of Neurosurgery, Aksaray State Hospital, Aksaray, Turkey -- Guner, E., Department of Neurosurgery, Ankara Koru Hospital, Ankara, Turkey -- Ugur, H.C., Department of Neurosurgery, Ankara University, School of Medicine, Ibni Sina Hospital, Ankara, Turkey -- Caglar, Y.S., Department of Neurosurgery, Ankara University, School of Medicine, Ibni Sina Hospital, Ankara, Turkey
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Adult ,Male ,medicine.medical_specialty ,Visual analogue scale ,Decompression ,medicine.medical_treatment ,03 medical and health sciences ,0302 clinical medicine ,Lumbar ,Musculoskeletal Pain ,Medicine ,Humans ,Unilateral discectomy ,In patient ,030212 general & internal medicine ,Prospective Studies ,Visual analog scale ,Bilateral leg pain ,Oswestry Disability Index ,Aged ,Lumbar Vertebrae ,business.industry ,ComputerSystemsOrganization_COMPUTER-COMMUNICATIONNETWORKS ,Laminectomy ,Leg pain ,Middle Aged ,Surgery ,ComputingMilieux_MANAGEMENTOFCOMPUTINGANDINFORMATIONSYSTEMS ,ComputingMethodologies_PATTERNRECOGNITION ,Treatment Outcome ,Pain score ,Female ,Neurology (clinical) ,Lumbar disc herniation ,InformationSystems_MISCELLANEOUS ,business ,030217 neurology & neurosurgery ,Intervertebral Disc Displacement ,Diskectomy - Abstract
PubMed ID: 29906582, Objective: To examine the surgical results of unilateral lumbar discectomy in patients with bilateral leg pain and discuss short- and long-term outcomes within the limits of lumbar decompression. Methods: We analyzed 60 patients with unilateral disc herniation who underwent unilateral lumbar discectomy and hemipartial laminectomy between 2014 and 2017. Group 1 (30 patients) had bilateral leg pain and unilateral lumbar disc herniation. Pain lateralization was determined radiologically. Group 2 (30 patients) had unilateral leg pain and unilateral lumbar disc herniation. Pain scores were preoperatively evaluated with visual analog scale (VAS) for both legs and Oswestry Disability Index (ODI) for overall life quality. In both groups, surgery was performed on the ipsilateral side of the herniated disc. Scores were repeated on postoperative day 1 and 1, 3, 6, 12, and 24 months later. VAS score differences for pain lateralization and disc levels were compared in group 1. ODI score differences were compared between both groups. Results were statistically analyzed. Results: VAS score differences were statistically significant at all follow-up time points in patients with ipsilateral and contralateral pain. VAS score differences between L4–L5 and L5–S1 level discopathies were statistically insignificant for all time points in both groups. All postoperative ODI score decreases for all time points were statistically significant (P < 0.001) for both groups, whereas the differences between groups 1 and 2 were statistically insignificant. Conclusions: Conventional lumbar disc surgery alone is sufficient for the ipsilateral side of radiologically demonstrated disc herniation in patients with bilateral leg pain. © 2018 Elsevier Inc., Preparation for the publication of this article was partly supported by Turkish Neurosurgical Society.
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- 2018
218. Temporal relationship between gastroesophageal reflux and rate of gastric emptying in children
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Ilhami Uslu, Sait Sager, Nalan Alan Selçuk, Ismail Dogan, Levent Kabasakal, Metin Halac, Çetin Önsel, Sager, S., Halac, M., Selcuk, N., Dogan, I., Kabasakal, L., Onsel, C., Uslu, I., and Yeditepe Üniversitesi
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Male ,medicine.medical_specialty ,Time Factors ,Supine position ,Gastric reflux ,gastroesophageal reflux ,Scintigraphy ,Gastroenterology ,gastric emptying ,Internal medicine ,Supine Position ,Humans ,scintigraphy ,Medicine ,Radiology, Nuclear Medicine and imaging ,In patient ,Child ,Radionuclide Imaging ,medicine.diagnostic_test ,Gastric emptying ,business.industry ,Incidence (epidemiology) ,digestive, oral, and skin physiology ,Infant, Newborn ,Reflux ,Infant ,General Medicine ,digestive system diseases ,Gastric Emptying ,Child, Preschool ,Gastroesophageal Reflux ,Female ,Acquisition time ,business - Abstract
Objectives: There are conflicting reports for the relationship of reflux and the gastric emptying rate. In addition, the acquisition period is not well defined for the gastroesophageal reflux studies. The aim of our study was to evaluate the temporal distribution of the reflux episodes and to evaluate whether the gastric emptying rate changed with the gastroesophageal reflux time or amount. Methods: We used radionuclide scintigraphy to evaluate 211 pediatric patients (0-10 years of age). Scintigraphic studies were performed by acquiring 15 s images for 1 h in a supine position after ingesting milk containing 0.5 mCi (18.5 MBq) Tc-99m colloid. Reflux episodes were calculated every 10 min for each patient who had reflux. The gastric emptying rate was measured by drawing an region of interest over the gastric activity. Results: Gastric reflux was observed in 104 patients (49.28%). The number of reflux episodes was higher in the first and second 10 min (33.7 and 29.1% respectively). The lowest reflux episode was observed in the last 10 min (between 50 and 60 min) (2.6%) suggesting that the reflux episode was decreasing by the gastric emptying. Within the first 30 min, reflux was observed in 98 of 104 patients (94.23%). The gastric emptying rate was calculated to be 73 min in patients with a higher incidence of reflux and 62 min in patients who had delayed and lower incidence of reflux episodes. In 104 patients, the average gastric emptying rate was 71.60 min. There were no significant differences in the gastric emptying rates between patients who had reflux episodes beginning in the first 30 min of the study and those who had reflux episodes in the last 30 min of the study (P>0.05). Conclusion: This study has suggested that the number of reflux episodes were not related with the gastric emptying rate. However, reflux could be observed in a higher frequency before gastric emptying, which also suggested that a 30-min period may be sufficient when reflux is shown early. In negative cases, a 60-min acquisition time is recommended for the diagnosis of gastroesophageal reflux. © 2010 Wolters Kluwer Health | Lippincott Williams & Wilkins.
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- 2010
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219. Plant-Microbe Interactions in Phytoremediation, K. Rehman Hakeem et al. (Eds.)
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ÖZYİĞİT, İBRAHİM İLKER and Özyiğit İ. İ., Dogan I.
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Multidisipliner ,NATURAL SCIENCES, GENERAL ,Multidisciplinary ,MULTIDISCIPLINARY SCIENCES ,Temel Bilimler ,Natural Sciences (SCI) ,Temel Bilimler (SCI) ,Doğa Bilimleri Genel ,ÇOK DİSİPLİNLİ BİLİMLER ,Natural Sciences - Published
- 2014
220. Evaluation of molecular, physiological and nutritional alterations caused by lead in rye (Secale cereale L.)
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ÖZYİĞİT, İBRAHİM İLKER and Özyiğit İ. İ., Igdelioglu S., Dogan I., Filiz E., Karadeniz S., Uzunova Z., Kulaç S., Demir G.
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Multidisipliner ,NATURAL SCIENCES, GENERAL ,Multidisciplinary ,MULTIDISCIPLINARY SCIENCES ,Temel Bilimler ,Natural Sciences (SCI) ,Temel Bilimler (SCI) ,Doğa Bilimleri Genel ,ÇOK DİSİPLİNLİ BİLİMLER ,Natural Sciences - Published
- 2014
221. Determination of Seasonal Heavy Metal Distribution in Pinus nigra Arnold and Soils in Bartin-Turkey
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ÖZYİĞİT, İBRAHİM İLKER and Özyiğit İ. İ., Yaşar U., Dogan I., Yalcın I., Yücedağ C., Küçükönder H., Severoglu Z., Demir G.
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Multidisipliner ,NATURAL SCIENCES, GENERAL ,Multidisciplinary ,MULTIDISCIPLINARY SCIENCES ,Temel Bilimler ,Natural Sciences (SCI) ,Temel Bilimler (SCI) ,Doğa Bilimleri Genel ,ÇOK DİSİPLİNLİ BİLİMLER ,Natural Sciences - Published
- 2014
222. Determination of heavy metal deposition and its effects on nineral nutrient uptake status of pinus brutia ten for assessment of pollution impact in its habitat-İstanbul
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ÖZYİĞİT, İBRAHİM İLKER and Özyiğit İ. İ., Yalcin I., Demir G., Dogan I., Yarci C.
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Multidisipliner ,NATURAL SCIENCES, GENERAL ,Multidisciplinary ,MULTIDISCIPLINARY SCIENCES ,Temel Bilimler ,Natural Sciences (SCI) ,Temel Bilimler (SCI) ,Doğa Bilimleri Genel ,ÇOK DİSİPLİNLİ BİLİMLER ,Natural Sciences - Published
- 2013
223. Growth and Nutrient Uptake in Boron Induced Sunflower
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ÖZYİĞİT, İBRAHİM İLKER and Özyiğit İ. İ., Dogan I., Igdelioglu S., Artam-Tarhan E., Demir G., Yalcin I.
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Multidisipliner ,NATURAL SCIENCES, GENERAL ,Multidisciplinary ,MULTIDISCIPLINARY SCIENCES ,Temel Bilimler ,Natural Sciences (SCI) ,Temel Bilimler (SCI) ,Doğa Bilimleri Genel ,ÇOK DİSİPLİNLİ BİLİMLER ,Natural Sciences - Published
- 2013
224. Cadmium stress alters nutrient status of bryophyllum daigremontianum
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ÖZYİĞİT, İBRAHİM İLKER and Özyiğit İ. İ., Dogan I., Yilmaz S., Demir G.
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Multidisipliner ,NATURAL SCIENCES, GENERAL ,Multidisciplinary ,MULTIDISCIPLINARY SCIENCES ,Temel Bilimler ,Natural Sciences (SCI) ,Temel Bilimler (SCI) ,Doğa Bilimleri Genel ,ÇOK DİSİPLİNLİ BİLİMLER ,Natural Sciences - Published
- 2013
225. Agrobacterium rhizogenes-Mediated Transformation and Its Biotechnological Applications in Crops
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ÖZYİĞİT, İBRAHİM İLKER and Özyiğit İ. İ., Dogan I., Artam-Tarhan E.
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Multidisipliner ,NATURAL SCIENCES, GENERAL ,Multidisciplinary ,MULTIDISCIPLINARY SCIENCES ,Temel Bilimler ,Natural Sciences (SCI) ,Temel Bilimler (SCI) ,Doğa Bilimleri Genel ,ÇOK DİSİPLİNLİ BİLİMLER ,Natural Sciences - Published
- 2013
226. Mineral nutrient uptake status of endemic isoetes anatolica prada & rolleri populations from Turkey
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ÖZYİĞİT, İBRAHİM İLKER and Özyiğit İ. İ., Dogan I., Eskin B., Keskin M., Demir G., Yalcin I.
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Multidisipliner ,NATURAL SCIENCES, GENERAL ,Multidisciplinary ,MULTIDISCIPLINARY SCIENCES ,Temel Bilimler ,Natural Sciences (SCI) ,Temel Bilimler (SCI) ,Doğa Bilimleri Genel ,ÇOK DİSİPLİNLİ BİLİMLER ,Natural Sciences - Published
- 2012
227. Some physiological and autecological features of centaurea kilaea boiss. from Turkey
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ÖZYİĞİT, İBRAHİM İLKER and Özyiğit İ. İ., Eskin B., Dogan I., Altay V., Demir G., Serin M.
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Multidisipliner ,NATURAL SCIENCES, GENERAL ,Multidisciplinary ,MULTIDISCIPLINARY SCIENCES ,Temel Bilimler ,Natural Sciences (SCI) ,Temel Bilimler (SCI) ,Doğa Bilimleri Genel ,ÇOK DİSİPLİNLİ BİLİMLER ,Natural Sciences - Published
- 2012
228. Use of Platanus occidentalis L. Barks for Monitoring Roadside Pollution in Istanbul-Turkey
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ÖZYİĞİT, İBRAHİM İLKER and Özyiğit İ. İ., Cetinkaya U., Demir G., Dogan I., Yalcin I., Yarci C.
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Multidisipliner ,NATURAL SCIENCES, GENERAL ,Multidisciplinary ,MULTIDISCIPLINARY SCIENCES ,Temel Bilimler ,Natural Sciences (SCI) ,Temel Bilimler (SCI) ,Doğa Bilimleri Genel ,ÇOK DİSİPLİNLİ BİLİMLER ,Natural Sciences - Published
- 2011
229. Changes in Antimicrobial Activity in Aluminum Treated Medicinal Plant Urtica pilulifera L
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ÖZYİĞİT, İBRAHİM İLKER, SEVEROĞLU, ZEKİ, and Özyiğit İ. İ., Severoğlu Z., Dogan I., Demir G., Yalcin I., Gurgen E.
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Multidisipliner ,NATURAL SCIENCES, GENERAL ,Multidisciplinary ,MULTIDISCIPLINARY SCIENCES ,Temel Bilimler ,Natural Sciences (SCI) ,Temel Bilimler (SCI) ,Doğa Bilimleri Genel ,ÇOK DİSİPLİNLİ BİLİMLER ,Natural Sciences - Published
- 2011
230. Determination of Some Metal Elements in Onosma proponticum (A Turkish Endemic Plant) and Soils Collected from Istanbul Turkey
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ÖZYİĞİT, İBRAHİM İLKER and Özyiğit İ. İ., Atas Y., Dogan I., Demir G., Yalcin I., Serin M.
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Multidisipliner ,NATURAL SCIENCES, GENERAL ,Multidisciplinary ,MULTIDISCIPLINARY SCIENCES ,Temel Bilimler ,Natural Sciences (SCI) ,Temel Bilimler (SCI) ,Doğa Bilimleri Genel ,ÇOK DİSİPLİNLİ BİLİMLER ,Natural Sciences - Published
- 2011
231. Mineral Element Distribution of Cotton (Gossypium hirsutum L.) Seedlings Under Different Salinity Levels
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ÖZYİĞİT, İBRAHİM İLKER and Özyiğit İ. İ., Dogan I., Demir G.
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Multidisipliner ,NATURAL SCIENCES, GENERAL ,Multidisciplinary ,MULTIDISCIPLINARY SCIENCES ,Temel Bilimler ,Natural Sciences (SCI) ,Temel Bilimler (SCI) ,Doğa Bilimleri Genel ,ÇOK DİSİPLİNLİ BİLİMLER ,Natural Sciences - Published
- 2011
232. Salinity Induced Genotoxicity in Cotton (Gossypium hirsutum L.)
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ÖZYİĞİT, İBRAHİM İLKER and Özyiğit İ. İ., Dogan I., Kekeç G., Sakcali S.
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Multidisipliner ,NATURAL SCIENCES, GENERAL ,Multidisciplinary ,MULTIDISCIPLINARY SCIENCES ,Temel Bilimler ,Natural Sciences (SCI) ,Temel Bilimler (SCI) ,Doğa Bilimleri Genel ,ÇOK DİSİPLİNLİ BİLİMLER ,Natural Sciences - Published
- 2011
233. Management of incisional cerebrospinal fluid leak in open cranial surgeries and the "folding technique" in duraplasty.
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Bayatli E, Ozgural O, Erdin E, Karadagoglu Ü, Kahilogullari G, Ugur HC, Tuna H, Attar A, Unlu A, Caglar YS, and Dogan I
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- Humans, Male, Female, Middle Aged, Adult, Aged, Young Adult, Adolescent, Retrospective Studies, Craniotomy methods, Craniotomy adverse effects, Neurosurgical Procedures methods, Neurosurgical Procedures adverse effects, Plastic Surgery Procedures methods, Child, Cerebrospinal Fluid Leak surgery, Cerebrospinal Fluid Leak etiology, Dura Mater surgery, Postoperative Complications etiology, Postoperative Complications surgery
- Abstract
Objective: The aim of this study was to review a series of patients who underwent open cranial surgeries to evaluate the incidence of iatrogenic incisional CSF leaks and discuss its prevention and management. The authors also discuss the utility of the "folding technique" used in duraplasty as an alternative to conventional dural reconstruction techniques., Methods: All patients undergoing open cranial surgery were reviewed, and those with incisional CSF leak were included in this study. CSF leakage was managed using either conservative nonsurgical methods or surgical interventions. When the conservative nonsurgical methods failed to curb the leak, surgical procedures such as lumbar external drainage (LED) using lumbar subarachnoid drainage, external ventricular drainage (EVD), a lumboperitoneal or ventriculoperitoneal shunt (VPS), and reexploration of the surgical site were considered., Results: Between 2019 and 2024, 2149 patients underwent open cranial surgeries at our hospital for any cranial pathology; 39 (1.8%) of these patients experienced postoperative incisional CSF leakage. The majority of the pathologies requiring surgeries were located in the supratentorial region (76.9%). Patients were classified according to the type of dural closure technique used. Primary stitching, the patient's fascia, or synthetic dura (resorbable, nonresorbable, or both) were used for dural reconstruction. The median interval between the surgery and the start of the leakage was 19 (IQR 1-79) days in patients with no history of radiotherapy; however, this duration was longer in patients who received radiotherapy (median 45 [IQR 10-540] days). The surgical interventions for CSF leakage were classified as wound resuturing (combined with other conservative approaches such as tightened dressing and elevating the head end of the bed), LED or EVD, or surgical reexploration. The folding technique in duraplasty is a simple way to achieve watertight duraplasty even with autograft or synthetic material., Conclusions: Incisional CSF leakage is a potentially preventable complication with high morbidity. Such cases could be managed via conservative approaches including wound resuturing, LED or EVD, and surgical reexploration. However, the management strategy is beyond any strict algorithm. This folding technique for duraplasty is a worthy replacement for conventional primary suturing for dural repair or reconstruction in cranial and even spinal defects. This study highlights the importance of regaining the watertight nature of the dura in the primary surgery to prevent any further intervention and lower the overall morbidity.
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- 2025
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234. Enantiodifferentiation of Thiohydantoin Derivatives by NMR in the Presence of Chiral Solvating Agent: (1R,2S)-Ephedrine and Chiral Symmetrical and Unsymmetrical Thioureas.
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Sarigul Ozbek S, Teke Tuncel S, Erol Gunal S, and Dogan I
- Abstract
2-Thiohydantoin derivatives, including different substitutions at N-1 and C-5 (5-methyl-, 5-isopropyl-, 1-acetyl-5-methyl-, and 1-acetyl-5-isopropyl-) (1-4, respectively), were synthesized by the known literature methods. In these synthetic pathways, it was reported that enantiomerically pure 2-thiohydantions were obtained in the absence of any solvent via the reaction of L-amino acids with thiourea (1&2) and via the reaction of L-amino acids with NH
4 SCN and acetic anhydride (3&4). However, in this study, in contrary to the previous literature studies, racemic mixtures of 2-thiohydantoins were obtained although the same synthetic methods were used. The racemic nature of 2-thiohydantoin derivatives (1-4) was proved by using1 H NMR analysis in the presence of (1R,2S)-(-)-ephedrine as a chiral auxiliary. In addition, the enantiomers of 3&4 were also resolved on chiral stationary phases by HPLC analyses. Furthermore, newly synthesized unsymmetrical chiral thioureas (S-1&S-2) and previously synthesized symmetrical ones (SS-3&SS-4) were used as chiral solvating agent (CSA) for the enantiodiscrimination of the thiohydantoins (5&6), previously reported. Optimal CSA/substrate ratios were determined for the best enantiodiscrimination., (© 2025 Wiley Periodicals LLC.)- Published
- 2025
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235. Origins of the substituent effects in the aldol condensation of axially chiral thiohydantoins: a computational study.
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Goksel Carpa N, Ozerdem Z, Dogan I, Haslak ZP, and Aviyente V
- Abstract
Aldol reactions are one of the most fundamental organic reactions involving the formation of carbon-carbon bonds that are commonly used in the synthesis of complex molecules through the condensation of an enol or enolate with a carbonyl group. The aldol reaction of thiohydantoin derivatives with benzaldehyde starts with hydrogen removal from C5 by lithium diisopropylamide (LDA) to form the enolate. Benzaldehyde adds to the enolate either at the less or more hindered site. The formed products have 3 chiral centers; thus they exist in 8 isomeric forms, RMS*/SPR*, RMR*/SPS*, SMR*/RPS*, and SMS*/RPR*, which are enantiomeric couples. Experimentally the axial chirality of the reactant is protected throughout the reaction; if the starting thiohydantoin is the M isomer, only RMS*, RMR*, SMR*, and SMS* diastereomers can be obtained. In this study, we aim to report a theoretical study of the aldol reactions between benzaldehyde and thiohydantoin derivatives conducted at the M06-2X/6-311+G(d,p) level of theory using the CPCM solvation model for THF as solvent, at 195 K. The investigation of the effect of substituents at C5 (stereocenter) and X positions on selectivity was performed by varying the substituents RCH
3 , XCF3 ; RCH3 , XCl; RCH2 Ph, XCF3 ; RCH(CH3 )2 , and XCF3 . Agreement of calculations (M06-2X/6-311+G(d,p)/CPCM(THF)) with experiment suggests that the enantioselectivity is predominantly governed by thermodynamic control.- Published
- 2025
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236. Longitudinal analysis of anthropometric measures over 5 years in patients with Friedreich ataxia in the EFACTS natural history study.
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Lischewski SA, Konrad K, Dogan I, Didszun C, Costa AS, Schawohl SA, Giunti P, Parkinson MH, Mariotti C, Nanetti L, Durr A, Ewenczyk C, Boesch S, Nachbauer W, Klopstock T, Stendel C, de Rivera Garrido FJR, Schöls L, Fleszar Z, Klockgether T, Grobe-Einsler M, Giordano I, Rai M, Pandolfo M, Schulz JB, and Reetz K
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- Humans, Male, Female, Longitudinal Studies, Adult, Child, Adolescent, Body Mass Index, Young Adult, Thinness epidemiology, Middle Aged, Anthropometry, Overweight epidemiology, Overweight complications, Friedreich Ataxia epidemiology, Friedreich Ataxia complications, Friedreich Ataxia physiopathology, Disease Progression
- Abstract
Background: Friedreich ataxia is a rare neurodegenerative disorder caused by frataxin deficiency. Both underweight and overweight occur in mitochondrial disorders, each with adverse health outcomes. We investigated the longitudinal evolution of anthropometric abnormalities in Friedreich ataxia and the hypothesis that both weight loss and weight gain are associated with faster disease progression., Methods: Participants were drawn from the European Friedreich's Ataxia Consortium for Translational Studies (EFACTS). Age- and sex-specific BMI and height scores were calculated using the KIGGS-BMI percentiles for children. Height correction was applied for scoliosis. Longitudinal data were analysed using linear mixed effects models and incremental standard deviation scores and growth mixture models identified subclasses with varying BMI trajectories., Results: Five hundred and forty-three adults and fifty-nine children were assessed for up to 5 years. In children, severe underweight (26%), underweight (7%), severe short stature (16%) and short stature (23%) were common. The corrected BMI percentile was stable in children, although 48% had negative incremental BMI scores over 1 year and 63% over 3 years versus 10%/year in a normal reference cohort. Overweight was common in adults (19%), with a slight increase in BMI over time. Longer GAA repeat size was linked to lower BMI in adults. Weight trajectory was not associated with ataxia progression in adults., Conclusion: Significant anthropometric abnormalities were identified, with underweight and short stature prevalent in children and overweight in adults. These findings highlight the need for regular nutritional monitoring and interventions to manage underweight in children and promote healthy weight in adults., (© 2025 The Author(s). European Journal of Neurology published by John Wiley & Sons Ltd on behalf of European Academy of Neurology.)
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- 2025
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237. Impact of Obesity on Subarachnoid Hemorrhage-Induced Cerebral Vasospasm: An Experimental Rat Model.
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Alpergin BC, Gokalp E, Kilinc MC, Aras N, Ersoz CC, and Dogan I
- Subjects
- Animals, Rats, Male, Rats, Sprague-Dawley, Vasospasm, Intracranial etiology, Subarachnoid Hemorrhage complications, Obesity complications, Disease Models, Animal, Basilar Artery pathology
- Abstract
Aim: To investigate the effect of obesity on the severity of cerebral vasospasm after subarachnoid hemorrhage., Material and Methods: In this study, six experimental groups, each consisting of 10 rats, were defined (60 rats in total). Groups 1 and 2 comprised rats with normal body weight, Groups 3 and 4 comprised obese rats, and Groups 5 and 6 comprised rats that returned to normal body weight after being obese. Rats in Groups 2, 4, and 6, represented the study groups, and experimental SAH was induced in them. Group 1, 3 and 5 was determined as the control group. Basilar artery lumen areas and wall thicknesses were measured and compared in all groups., Results: The luminal area of the basilar artery was significantly reduced in Groups 2, 4, and 6, than in Groups 1, 3, and 5, respectively. This indicated the development of vasospasm. No significant differences were found in the basilar artery luminal areas and wall thicknesses between Groups 1, 3, and 5. However, there were significant differences between Groups 2, 4, and 6. The basilar artery luminal area was significantly smaller in Group 4 than in Groups 2 and 6. There was no significant difference in basilar artery luminal areas between Groups 2 and 6., Conclusion: This experimental study elucidated that the severity of vasospasm subsequent to subarachnoid hemorrhage escalated in the presence of obesity, and conversely, a return to normal body weight mitigated the severity of cerebral vasospasm. Prospective clinical investigations ought to scrutinize the correlation between obesity and vasospasm, emphasizing the necessity for vigilant monitoring of vasospasm post-SAH in obese patients.
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- 2025
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238. Subtypes of cognitive impairment in cerebellar disease identified by cross-diagnostic cluster-analysis: results from a German multicenter study.
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Liu Q, Rubarth K, Faber J, Sulzer P, Dogan I, Barkhoff M, Minnerop M, Berlijn AM, Elben S, Jacobi H, Aktories JE, Huvermann DM, Erdlenbruch F, Van der Veen R, Müller J, Nio E, Frank B, Köhrmann M, Wondzinski E, Siebler M, Reetz K, Konczak J, Konietschke F, Klockgether T, Synofzik M, Röske S, Timmann D, and Thieme A
- Subjects
- Humans, Male, Female, Middle Aged, Germany epidemiology, Cluster Analysis, Aged, Adult, Neuropsychological Tests, Cognitive Dysfunction diagnosis, Cognitive Dysfunction etiology, Cognitive Dysfunction physiopathology, Cerebellar Diseases complications, Cerebellar Diseases diagnosis, Cerebellar Diseases physiopathology
- Abstract
Background: Cognitive and neuropsychiatric impairment, known as cerebellar cognitive affective syndrome (CCAS), may be present in cerebellar disorders. This study identified distinct CCAS subtypes in cerebellar patients using cluster analysis., Methods: The German CCAS-Scale (G-CCAS-S), a brief screening test for CCAS, was assessed in 205 cerebellar patients and 200 healthy controls. K-means cluster analysis was applied to G-CCAS-S data to identify cognitive clusters in patients. Demographic and clinical variables were used to characterize the clusters. Multiple linear regression quantified their relative contribution to cognitive performance. The ability of the G-CCAS-S to correctly distinguish between patients and controls was compared across the clusters., Results: Two clusters explained the variance of cognitive performance in patients' best. Cluster 1 (30%) exhibited severe impairment. Cluster 2 (70%) displayed milder dysfunction and overlapped substantially with that of healthy controls. Cluster 1 patients were on average older, less educated, showed more severe ataxia and more extracerebellar involvement than cluster 2 patients. The cluster assignment predicted cognitive performance even after adjusting for all other covariates. The G-CCAS-S demonstrated good discriminative ability for cluster 1, but not for cluster 2., Conclusions: The variance of cognitive impairment in cerebellar disorders is best explained by one severely affected and one mildly affected cluster. Cognitive performance is not only predicted by demographic/clinical characteristics, but also by cluster assignment itself. This indicates that factors that have not been captured in this study likely have effects on cognitive cerebellar functions. Moreover, the CCAS-S appears to have a relative weakness in identifying patients with only mild cognitive deficits., Study Registration: The study has prospectively been registered at the German Clinical Study Register ( https://www.drks.de ; DRKS-ID: DRKS00016854)., Competing Interests: Declarations. Conflicts of interest: Matthis Synofzik has received consultancy honoraria from Ionis, UCB, Prevail, Orphazyme, Biogen, Servier, Reata, GenOrph, AviadoBio, Biohaven, Zevra, Lilly, and Solaxa, all unrelated to the present manuscript. All other authors declare no financial disclosures or conflicts of interest other than the funding stated concerning the research covered in this manuscript. Ethical approval: This study was approved by the local ethics committees of the participating sites and performed in accordance with the ethical standards laid down in the Declaration of Helsinki of 1964 and its later amendments. Informed consent: Participants’ written informed consent was obtained prior to any study related procedures., (© 2024. The Author(s).)
- Published
- 2024
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239. EFFECT OF KYPHOPLASTY ON PAIN CONTROL AND VERTEBRAL RESTORATION.
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Kilinc MC, Alpergin BC, Ozpiskin O, Aktan ES, and Dogan I
- Abstract
Background and Aim: Numerous studies have been conducted regarding vertebral restoration, development of kyphotic deformity, and pain control following balloon kyphoplasty. However, there is no consensus regarding the ideal time to perform kyphoplasty. Herein, we aimed to compare the results of treatment of different vertebral levels following early or late kyphoplasty., Patients and Methods: Between 2017 and 2022, 283 patients with single-level osteoporotic vertebral fractures were retrospectively reviewed. 100 patients who attended regular postoperative follow-ups, visual analog scale (VAS) values were recorded, and osteoporosis tests were performed were included in the study. Traumatic single-level fractures in patients with osteoporosis who were aged >60 years were included in the study. Patients with a history of malignancy, previous spinal surgery, or neurological deficits were not included in the study. A total of 50 patients underwent kyphoplasty within 3 days of sustaining the fracture (Group 1), and 50 patients underwent kyphoplasty more than 3 after sustaining the fracture (Group 2). Groups A, B, and C included fractures at the T7-T11 levels, T12-L1 levels (thoracolumbar junction), and L2-L5 levels, respectively. These groups were compared among themselves. Bilateral balloon kyphoplasty was performed under sedation in the prone position. Preoperative and postoperative VAS scores, anterior vertebral heights (AVH), and kyphotic angles (KA) were measured and recorded. The vertebral segments that underwent early and late kyphoplasty were also compared among themselves., Results: In all the patients who underwent early or late kyphoplasty, there was a significant decrease in the kyphotic angle and a significant increase in vertebral heights during the early postoperative period (p < 0.001). There was no significant change in the vertebral heights and kyphotic angle between the early and late postoperative periods (p = 0.780). Early kyphoplasty demonstrated better pain control with a greater improvement in VAS score (p < 0.001) than late kyphoplasty., Conclusion: Kyphoplasty plays an important role in reducing pain and ensuring early mobilization in older patients. In our study, the improvements in both symptoms and radiologic features are concrete evidences in favor of performing early kyphoplasty., Competing Interests: The authors declare that they have no conflict of interest., (Thieme. All rights reserved.)
- Published
- 2024
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240. Posterior fossa epidermoid tumors: a single-center study and proposed classification system.
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Bayatli E, Ozgural O, Eroglu U, Dogan I, Hasimoglu S, Bozkurt M, Kahilogullari G, Ugur HC, and Unlu A
- Subjects
- Humans, Male, Female, Adult, Middle Aged, Retrospective Studies, Young Adult, Adolescent, Treatment Outcome, Aged, Cerebellopontine Angle surgery, Cerebellopontine Angle pathology, Cerebellopontine Angle diagnostic imaging, Cranial Fossa, Posterior surgery, Cranial Fossa, Posterior diagnostic imaging, Cranial Fossa, Posterior pathology, Child, Magnetic Resonance Imaging, Carcinoma, Squamous Cell surgery, Carcinoma, Squamous Cell pathology, Carcinoma, Squamous Cell classification, Infratentorial Neoplasms surgery, Infratentorial Neoplasms classification, Infratentorial Neoplasms diagnostic imaging, Infratentorial Neoplasms pathology, Neurosurgical Procedures methods, Epidermal Cyst surgery, Epidermal Cyst diagnostic imaging, Epidermal Cyst classification, Epidermal Cyst pathology
- Abstract
Background: Epidermoid tumors of the cerebellopontine angle and posterior fossa account for approximately 1% of all intracranial tumors. Classifications that may guide surgical planning in the current neurosurgical practice are lacking. This study aimed to focus on the surgical outcome and suggest a classification system that may aid neurosurgeons in determining the goal of resection to minimize morbidity and mortality rates., Methods: The study population comprised patients who underwent surgery and follow-up for tissue-proven epidermoid tumors between 2015 and 2020. Patients' data, including demographic features, clinical symptomatology, the extent of surgical resection, and postoperative outcomes, were retrospectively evaluated. A new classification system was designed based on the anatomical-radiological findings and was evaluated in terms of clinical symptomatology, radiological features, surgical approach, and postoperative outcomes., Results: The patient population comprised 22 women (57.9%) and 16 men (42.1%), with a mean age of 34.9 years. A practical classification system based on the radiological-anatomical vertical (1, 2, and 3) and horizontal (a, b, and c) tumor extensions was designed. No significant differences were found in the patients in terms of sex/age. The most commonly observed symptom was gait disturbance (34.2%). The preoperative tumor diameter was significantly larger in the subtotal resection (STR) group than in the gross total resection (GTR) and near-total resection (NTR) groups. Significantly more cistern involvement was observed in the STR group than in the GTR group. The GTR, NTR, and STR rates were higher in grade 1, 3, and 2 cases, respectively. The subgroup 'a' was correlated with higher resection rates (GTR and NTR), whereas the subgroup 'b' was correlated with STR., Conclusions: Our suggested classification system represents a simple and practical model that may guide neurosurgeons in predicting the goal of resection during surgical planning and in minimizing potential morbidity.
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- 2024
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241. Structural Brain Correlates of Sleep Microstructure in Spinocerebellar Ataxia Type 2 and its Role on Clinical Phenotype.
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Rodríguez-Labrada R, Canales-Ochoa N, Galicia-Polo ML, Cruz-Rivas E, Romanzetti S, Peña-Acosta A, Estupiñán-Rodríguez A, Vázquez-Mojena Y, Dogan I, Auburger G, Reetz K, and Velázquez-Pérez L
- Subjects
- Adult, Female, Humans, Male, Middle Aged, Sleep physiology, Atrophy pathology, Brain pathology, Brain diagnostic imaging, Brain physiopathology, Magnetic Resonance Imaging, Phenotype, Polysomnography, Spinocerebellar Ataxias diagnostic imaging, Spinocerebellar Ataxias physiopathology, Spinocerebellar Ataxias pathology, Spinocerebellar Ataxias genetics
- Abstract
The influence of brain atrophy on sleep microstructure in Spinocerebellar Ataxias (SCAs) has not been extensively explored limiting the use of these sleep traits as surrogate biomarkers of neurodegeneration and clinical phenotype. The objective of the study is to explore the relationship between sleep microstructure and brain atrophy in SCA2 and its role in the clinical phenotype. Fourteen SCA2 mutation carriers (7 pre-manifest and 7 manifest subjects) underwent polysomnographic, structural MRI, and clinical assessments. Particularly, markers of REM and non-REM sleep microstructure, measures of cerebellar and brainstem atrophy, and clinical scores were analyzed through correlation and mediation analyses. The sleep spindle activity exhibited a negative correlation with the number of trials required to complete the verbal memory test (VMT), and a positive correlation with the cerebellar volume, but the significance of the latter correlation did not survive multiple testing corrections. However, the causal mediation analyses unveiled that sleep spindle activity significantly mediates the association between cerebellar atrophy and VMT performance. Regarding REM sleep, both phasic EMG activity and REM sleep without atonia exhibited significant associations with pontine atrophy and disease severity measures. However, they did not demonstrate a causal mediation effect between the atrophy measures and disease severity. Our study provides evidence about the association of the pontocerebellar atrophy with sleep microstructure in SCA2 offering insights into the cerebellar involvement in cognition via the control of the sleep spindle activity. Therefore, our findings may help to understand the disease pathogenesis and to better characterize sleep microstructure parameters as disease biomarkers.Clinical trial registration number (TRN): No applicable., (© 2024. The Author(s), under exclusive licence to Springer Science+Business Media, LLC, part of Springer Nature.)
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- 2024
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242. The Pattern and Staging of Brain Atrophy in Spinocerebellar Ataxia Type 2 (SCA2): MRI Volumetrics from ENIGMA-Ataxia.
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Robertson JW, Adanyeguh I, Bender B, Boesch S, Brunetti A, Cocozza S, Coutinho L, Deistung A, Diciotti S, Dogan I, Durr A, Fernandez-Ruiz J, Göricke SL, Grisoli M, Han S, Mariotti C, Marzi C, Mascalchi M, Mochel F, Nachbauer W, Nanetti L, Nigri A, Ono SE, Onyike CU, Prince JL, Reetz K, Romanzetti S, Saccà F, Synofzik M, Ghizoni Teive HA, Thomopoulos SI, Thompson PM, Timmann D, Ying SH, Harding IH, and Hernandez-Castillo CR
- Abstract
Objective: Spinocerebellar ataxia type 2 (SCA2) is a rare, inherited neurodegenerative disease characterised by progressive deterioration in both motor coordination and cognitive function. Atrophy of the cerebellum, brainstem, and spinal cord are core features of SCA2, however the evolution and pattern of whole-brain atrophy in SCA2 remain unclear. We undertook a multi-site, structural magnetic resonance imaging (MRI) study to comprehensively characterize the neurodegeneration profile of SCA2., Methods: Voxel-based morphometry analyses of 110 participants with SCA2 and 128 controls were undertaken to assess groupwise differences in whole-brain volume. Correlations with clinical severity and genotype, and cross-sectional profiling of atrophy patterns at different disease stages, were also performed., Results: Atrophy in SCA2 relative to controls was greatest (Cohen's d >2.5) in the cerebellar white matter (WM), middle cerebellar peduncle, pons, and corticospinal tract. Very large effects ( d >1.5) were also evident in the superior cerebellar, inferior cerebellar, and cerebral peduncles. In cerebellar grey matter (GM), large effects ( d >0.8) mapped to areas related to both motor coordination and cognitive tasks. Strong correlations (| r |>0.4) between volume and disease severity largely mirrored these groupwise outcomes. Stratification by disease severity showed a degeneration pattern beginning in cerebellar and pontine WM in pre-clinical subjects; spreading to the cerebellar GM and cerebro-cerebellar/corticospinal WM tracts; then finally involving the thalamus, striatum, and cortex in severe stages., Interpretation: The magnitude and pattern of brain atrophy evolves over the course of SCA2, with widespread, non-uniform involvement across the brainstem, cerebellar tracts, and cerebellar cortex; and late involvement of the cerebral cortex and striatum., Competing Interests: Potential Conflicts of Interest The authors have no conflicts of interest to declare with respect to this study.
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- 2024
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243. Rechallenge of Trastuzumab-based Therapy in HER2-Positive Breast Cancer Patients who Progressed Under TDM-1.
- Author
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Dogan I, Ahmed MA, Yıldız A, and Vatansever S
- Abstract
Data on rechallenges of HER2 targetted agents in breast cancer patients is limited. The goal of the study was to evaluate the effectiveness of trastuzumab-based therapy in patients who progressed under trastuzumab emtansine (TDM-1). The study was designed as a retrospective observational study. Survival plots were performed with the Kaplan-Meier method. Fifteen patients were involved in the study. The average age was 45 (range, 30-66). De novo metastatic patient number was six (40%), and the average number of metastatic sites was 2 (range, 1-4) at diagnosis. Fourteen patients (92.3%) had undergone breast surgery (lumpectomy or mastectomy). All patients previously had been treated with trastuzumab-based chemotherapy and TDM-1. Also, nine (60%) patients had received endocrine therapy, and nine (60%) patients had palliative radiotherapy. After progression under TDM-1, patients received trastuzumab with chemotherapy (73.3%) or alone (26.7%). The overall response ratio was 66.7%. Median progression-free survival was 9.4 months (95% CI, 3.4-15.3). The median OS duration was 24.2 (95% CI, 13.5-34.9) months. Toxicity in all grades was observed in ten (66.7%) patients, and grade 3-4 toxicity (anemia and neutropenia) in two patients (13.3%). This study showed that rechallenge trastuzumab-based therapy was effective and good-tolerated in heavily pretreated patients who had progressed under TDM-1., Competing Interests: Conflict of InterestThe authors declare no competing interests., (© The Author(s), under exclusive licence to Indian Association of Surgical Oncology 2024. Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.)
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- 2024
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244. Efficacy of Lapatinib Plus Capecitabine After TDM-1 in HER2-Positive Metastatic Breast Cancer Patients.
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Dogan I, Yıldız A, Ahmed MA, and Vatansever S
- Abstract
Different targeted therapy options exist for treating HER2-positive metastatic breast cancer patients. This study evaluated the efficacy and tolerability of the lapatinib plus capecitabine combination after TDM-1 in HER2-positive metastatic breast cancer patients. We retrospectively evaluated the HER2-positive metastatic breast cancer patients' data. The patients who progressed after trastuzumab-based chemotherapy and TDM-1 were included in the study. We used the Kaplan-Meier for survival analysis. Eighteen patients were involved in the study. The average age was 48 (range 31-65). De novo metastatic patient's number was 5 (27.8%). The most common metastatic sites were liver (50%), lung (44.4%), and brain (44.4%), respectively. All patients were previously treated with trastuzumab + chemotherapy and TDM-1. Also, seven (38.9%) patients received hormonotherapy and twelve (66.7%) patients received palliative radiotherapy. The complete response ratio was 5.6%, partial response 11.8%, and stable response 29.4%. Median progression-free survival was found as 5.5 (95% CI, 3.2-7.7) months. The hematological and non-hematological toxicity ratio was 41.2% and 52.9%, respectively. Grade 3-4 toxicity (diarrhea, anemia, and mucositis) was observed in four (22.2%) patients. The median OS duration was 8.2 months (95% CI, 4.3-12.0). Treatment options are limited in heavily pretreated HER2-positive breast cancer patients. Despite a small number of patients, this study showed that the lapatinib plus capecitabine combination was effective and well-tolerated in heavily pretreated HER2-positive breast cancer patients after TDM-1., Competing Interests: Conflict of InterestThe authors declare no competing interests., (© The Author(s), under exclusive licence to Indian Association of Surgical Oncology 2024. Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.)
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- 2024
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245. Neurochemical changes in the progression of Huntington's disease: A meta-analysis of in vivo 1 H-MRS studies.
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Jing Y, Dogan I, Reetz K, and Romanzetti S
- Subjects
- Humans, Creatine metabolism, Inositol metabolism, Aspartic Acid analogs & derivatives, Aspartic Acid metabolism, Brain metabolism, Brain diagnostic imaging, Huntington Disease metabolism, Huntington Disease genetics, Disease Progression, Proton Magnetic Resonance Spectroscopy methods
- Abstract
Proton magnetic resonance spectroscopy (
1 H-MRS) allows measuring specific brain metabolic alterations in Huntington's disease (HD), and these metabolite profiles may serve as non-invasive biomarkers associated with disease progression. Despite this potential, previous findings are inconsistent. Accordingly, we performed a meta-analysis on available in vivo1 H-MRS studies in premanifest (Pre-HD) and symptomatic HD stages (Symp-HD), and quantified neurometabolic changes relative to controls in 9 Pre-HD studies (227 controls and 188 mutation carriers) and 14 Symp-HD studies (326 controls and 306 patients). Our results indicated decreased N-acetylaspartate and creatine in the basal ganglia in both Pre-HD and Symp-HD. The overall level of myo-inositol was decreased in Pre-HD while increased in Symp-HD. Besides, Symp-HD patients showed more severe metabolism disruption than Pre-HD patients. Taken together,1 H-MRS is important for elucidating progressive metabolite changes from Pre-HD to clinical conversion; N-acetylaspartate and creatine in the basal ganglia are already sensitive at the preclinical stage and are promising biomarkers for tracking disease progression; overall myo-inositol is a possible characteristic metabolite for distinguishing HD stages., Competing Interests: Declaration of competing interest The authors report no conflict of interest., (Copyright © 2023. Published by Elsevier Inc.)- Published
- 2024
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246. Hybrid Positron Emission Tomography and Magnetic Resonance Imaging Guided Microsurgical Management of Glial Tumors: Case Series and Review of the Literature.
- Author
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Caglar YS, Buyuktepe M, Sayaci EY, Dogan I, Bozkurt M, Peker E, Soydal C, Ozkan E, and Kucuk NO
- Abstract
In this case series, we aimed to report our clinical experience with hybrid positron emission tomography (PET) and magnetic resonance imaging (MRI) navigation in the management of recurrent glial brain tumors. Consecutive recurrent neuroglial brain tumor patients who underwent PET/MRI at preoperative or intraoperative periods were included, whereas patients with non-glial intracranial tumors including metastasis, lymphoma and meningioma were excluded from the study. A total of eight patients (mean age 50.1 ± 11.0 years) with suspicion of recurrent glioma tumor were evaluated. Gross total tumor resection of the PET/MRI-positive area was achieved in seven patients, whereas one patient was diagnosed with radiation necrosis, and surgery was avoided. All patients survived at 1-year follow-up. Five (71.4%) of the recurrent patients remained free of recurrence for the entire follow-up period. Two patients with glioblastoma had tumor recurrence at the postoperative sixth and eighth months. According to our results, hybrid PET/MRI provides reliable and accurate information to distinguish recurrent glial tumor from radiation necrosis. With the help of this differential diagnosis, hybrid imaging may provide the gross total resection of recurrent tumors without harming eloquent brain areas.
- Published
- 2024
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247. Genotype-specific spinal cord damage in spinocerebellar ataxias: an ENIGMA-Ataxia study.
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Rezende TJR, Adanyaguh I, Barsottini OGP, Bender B, Cendes F, Coutinho L, Deistung A, Dogan I, Durr A, Fernandez-Ruiz J, Göricke SL, Grisoli M, Hernandez-Castillo CR, Lenglet C, Mariotti C, Martinez ARM, Massuyama BK, Mochel F, Nanetti L, Nigri A, Ono SE, Öz G, Pedroso JL, Reetz K, Synofzik M, Teive H, Thomopoulos SI, Thompson PM, Timmann D, van de Warrenburg BPC, van Gaalen J, França MC Jr, and Harding IH
- Subjects
- Humans, Male, Female, Middle Aged, Adult, Genotype, Aged, Spinal Cord pathology, Spinal Cord diagnostic imaging, Cervical Cord diagnostic imaging, Cervical Cord pathology, Severity of Illness Index, Case-Control Studies, Spinocerebellar Ataxias diagnostic imaging, Spinocerebellar Ataxias pathology, Spinocerebellar Ataxias genetics, Magnetic Resonance Imaging
- Abstract
Background: Spinal cord damage is a feature of many spinocerebellar ataxias (SCAs), but well-powered in vivo studies are lacking and links with disease severity and progression remain unclear. Here we characterise cervical spinal cord morphometric abnormalities in SCA1, SCA2, SCA3 and SCA6 using a large multisite MRI dataset., Methods: Upper spinal cord (vertebrae C1-C4) cross-sectional area (CSA) and eccentricity (flattening) were assessed using MRI data from nine sites within the ENIGMA-Ataxia consortium, including 364 people with ataxic SCA, 56 individuals with preataxic SCA and 394 nonataxic controls. Correlations and subgroup analyses within the SCA cohorts were undertaken based on disease duration and ataxia severity., Results: Individuals in the ataxic stage of SCA1, SCA2 and SCA3, relative to non-ataxic controls, had significantly reduced CSA and increased eccentricity at all examined levels. CSA showed large effect sizes ( d >2.0) and correlated with ataxia severity (r<-0.43) and disease duration (r<-0.21). Eccentricity correlated only with ataxia severity in SCA2 (r=0.28). No significant spinal cord differences were evident in SCA6. In preataxic individuals, CSA was significantly reduced in SCA2 ( d =1.6) and SCA3 ( d =1.7), and the SCA2 group also showed increased eccentricity ( d =1.1) relative to nonataxic controls. Subgroup analyses confirmed that CSA and eccentricity are abnormal in early disease stages in SCA1, SCA2 and SCA3. CSA declined with disease progression in all, whereas eccentricity progressed only in SCA2., Conclusions: Spinal cord abnormalities are an early and progressive feature of SCA1, SCA2 and SCA3, but not SCA6, which can be captured using quantitative MRI., Competing Interests: Competing interests: TJRR, FC, ARMM, JLP, OB, BKM, IHH, AD, DT, SLG, ID, IA, GO, CM, LN, AN, MG, LC, HAGT, SEO, CRHR, JFR, FM, AD, BW, JG, MS, PMT, SIT: none. The authors declare no competing interests. KR received honoraria for presentations or advisory boards from Biogen and Roche as well as clinical trial grants from Pfizer, Merck, Minoryx, Biogen and Roche. BB is cofounder, shareholder and CTO of AIRAmed GmbH. CL received research grants from Minoryx Therapeutics and research support from Biogen Inc., (© Author(s) (or their employer(s)) 2024. Re-use permitted under CC BY. Published by BMJ.)
- Published
- 2024
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248. Clinical factors predicting objective response to bevacizumab-based chemotherapies in advanced and recurrent epithelial ovarian cancer.
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Khanmammadov N, Dogan I, Okay NS, Khishigsuren B, Azizy A, Saip P, Gasimli K, and Aydiner A
- Abstract
Background: Bevacizumab-based chemotherapies are commonly administered in the treatment of patients diagnosed with epithelial ovarian cancer (EOC). The primary aim of this study was to assess the factors that predict the objective response to bevacizumab-based therapies in cases of advanced and recurrent EOC., Methods: The retrospective data of 264 patients with EOC from the current study were collected between 2009 and 2022 at our clinic. Survival analyses were conducted utilizing the Kaplan-Meier method and the log-rank test. Binary logistic regression analysis was employed to assess the factors predicting the objective response., Results: A predominant subset of patients (83%) presented with serous adenocarcinoma, exhibiting a high-grade differentiation at 87%. The vast majority (80%) of the cohort experienced disease recurrence. Three-fourths of the cases received bevacizumab in combination with platinum-based doublet chemotherapy. In the multivariate analysis, clinical factors such as a disease recurrence (P=0.031), upfront tumor debulking surgery before bevacizumab (P=0.009), doublet chemotherapy (P=0.003), and the presence of malignant pleural effusion (P=0.024) emerged as significant determinants influencing the Objective Response Rate (ORR) in patients undergoing bevacizumab-based therapy. The ORR was 67.5% (N.=178), comprising 15.2% complete responses (N.=40) and 52.1% partial responses (N.=138). The median Progression-Free Survival (PFS) and Overall Survival (OS) were estimated at 10.2 months (95% CI, 8.60-11.9) and 20.1 months (95% CI, 16.0-24.2), respectively., Conclusions: The responses to bevacizumab-based chemotherapies could be predict by the presence of malignant pleural effusion, disease recurrence, upfront tumor debulking surgery and doublet regimen of chemotherapy.
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- 2024
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249. Comparing Environmental Impacts of Single-Junction Silicon and Silicon/Perovskite Tandem Photovoltaics-A Prospective Life Cycle Assessment.
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van der Hulst MK, Magoss D, Massop Y, Veenstra S, van Loon N, Dogan I, Coletti G, Theelen M, Hoeks S, Huijbregts MAJ, van Zelm R, and Hauck M
- Abstract
Tandem photovoltaics applying perovskite on silicon are considered to be a possible route to sustaining continuous efficiency improvements and price reductions. A meaningful market share for such tandems is, however, at least a decade away. Herein, a comprehensive prospective life cycle assessment was conducted, comparing the full life cycle of monofacial and bifacial silicon/perovskite tandem panels with single-junction silicon panels produced up to 2050. The end-of-life included the recovery of silicon and silver. Climate change impacts per kilowatt hour were projected to decrease by two-thirds over time. Tandem panels are expected to reach impacts of 8-10 g CO
2 -eq/kWh in 2050, while single-junction panels may reach 11-13 g CO2 -eq/kWh in 2050. Other midpoint impact categories with substantial contributions to damaging human health and ecosystem quality were toxicity, particulate matter formation, and acidification, with tandems having lower impacts in each category. Reductions in impacts over time are mainly the result of grid mix decarbonization and panel efficiency improvements. Balance-of-system and recycling were found to contribute substantially to these impact categories. To ensure that tandem panels provide environmental benefits, annual degradation rates should not exceed 1% for monofacial or 3% for bifacial tandems, and refurbishment of panels with advanced degradation is crucial., Competing Interests: The authors declare no competing financial interest., (© 2024 The Authors. Published by American Chemical Society.)- Published
- 2024
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250. Prediction of Meningioma Grade Using Hematological Parameters.
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Bayatli E, Ozgural O, Dogan I, Ozpiskin OM, Hasimoglu S, Kuzukiran YC, Zaimoglu M, Eroglu U, Kahilogullari G, Ugur HC, and Caglar YS
- Subjects
- Humans, Female, Male, Middle Aged, Retrospective Studies, Adult, Aged, Prognosis, Ki-67 Antigen analysis, Ki-67 Antigen metabolism, Lymphocytes pathology, Platelet Count, Blood Platelets pathology, Young Adult, Predictive Value of Tests, Lymphocyte Count, Aged, 80 and over, Meningioma blood, Meningioma pathology, Meningioma surgery, Meningeal Neoplasms blood, Meningeal Neoplasms pathology, Meningeal Neoplasms surgery, Neoplasm Grading, Neutrophils pathology
- Abstract
Objective: Predicting the aggressiveness of meningiomas may influence the surgical strategy timing. Because of the paucity of robust markers, the systemic immune-inflammation (SII) index is a novel biomarker to be an independent predictor of poor prognosis in various cancers including gliomas. We aimed to investigate the value of SII as well as neutrophil-lymphocyte ratio (NLR) and platelet-lymphocyte ratio (PLR) indices in predicting prognosis., Methods: Records including demographic, clinical, and laboratory data of patients operated on due to intracranial meningioma in 2017-2023 were retrospectively reviewed., Results: A total of 234 patients were included in this study. All of SII index, NLR, and PLR values at presentation were significantly higher in grade ≥2 meningiomas. A positive correlation was observed between SII index and Ki67 index (r=0.313; P<0.001); between NLR and Ki67 index (r=0.330; P<0.001); and between PLR and Ki67 index (r=0.223; P<0.01). SII index (optimal cutoff level >618), NLR (optimal cutoff level >3.53), and PLR (optimal cutoff level >121.2) showed significant predictive values., Conclusions: This is the first study to assess the prognostic value of the SII index in patients with intracranial meningiomas. Increased SII index, NLR and PLR were correlated with higher grade and higher Ki-67 index. They also harbor the potential to screen patients that may need more aggressive treatments or more frequent follow-up examinations., (Copyright © 2024 Elsevier Inc. All rights reserved.)
- Published
- 2024
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Catalog
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