232 results on '"Cooper, Kumarasen"'
Search Results
202. Impact of human papillomavirus (HPV) association on the prognosis of pyriform sinus carcinoma: A retrospective cohort study.
- Author
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Koga S, Du W, Brody RM, and Cooper K
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- 2025
- Full Text
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203. Intraosseous mandibular clear cell odontogenic carcinoma with predominant small round blue cells: a potential diagnostic pitfall.
- Author
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Koga S, Gates JC, Peters SM, and Cooper K
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- Humans, Male, Adult, Diagnosis, Differential, Biopsy, Sarcoma, Ewing pathology, Sarcoma, Ewing diagnosis, Sarcoma, Ewing surgery, Immunohistochemistry, Biomarkers, Tumor analysis, Tomography, X-Ray Computed, Radiography, Panoramic, Odontogenic Tumors pathology, Odontogenic Tumors diagnosis, Odontogenic Tumors surgery, Mandibular Neoplasms pathology, Mandibular Neoplasms surgery, Mandibular Neoplasms diagnosis
- Abstract
Objective: Clear cell odontogenic carcinoma (CCOC) is a rare malignancy of the jaw, presenting significant diagnostic challenges. This report aims to highlight the complexities associated with biopsy-based diagnoses of oral and maxillofacial lesions, as demonstrated in a case of intraosseous mandibular CCOC initially suggestive of Ewing's sarcoma due to its presentation with small round blue cells., Results: The patient, a 37-year-old male, presented with a mandibular lesion that on incisional biopsy was suggestive of Ewing's sarcoma. Subsequent, comprehensive histologic evaluation after definitive resection via mandibulectomy revealed a CCOC, characterized by a biphasic pattern of clear and basaloid cells. Histological examination confirmed the presence of glycogen-rich clear cells, supported by periodic acid-Schiff (PAS) staining and confirmed by PAS diastase staining, which demonstrated glycogen digestion. Immunohistochemistry was positive for AE1/AE3, p40, and p63, while negative for c-kit and CD34, confirming CCOC and excluding other malignancies such as Ewing's sarcoma, which would have been treated with neoadjuvant chemotherapy instead of primary surgical treatment as in CCOC., Conclusion: This case highlights the essential need for thorough histopathological evaluation and the value of a second opinion via additional histologic consultation, particularly due to the diagnostic challenges of heterogeneous lesions in the oral and maxillofacial region., Competing Interests: Declarations of Interest None declared., (Copyright © 2024 Elsevier Inc. All rights reserved.)
- Published
- 2024
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204. Bartonella quintana Infection in Kidney Transplant Recipients from Donor Experiencing Homelessness, United States, 2022.
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Beeson AM, Rich SN, Russo ME, Bhatnagar J, Kumar RN, Ritter JM, Annambhotla P, Takeda MR, Kuhn KF, Pillai P, DeLeon-Carnes M, Scobell R, Ekambaram M, Finkel R, Reagan-Steiner S, Martines RB, Satoskar RS, Vranic GM, Mohammed R, Rivera GE, Cooper K, Abdelal H, Couturier MR, Bradley BT, Hinckley AF, Koehler JE, Mead PS, Kuehnert MJ, Ackelsberg J, Basavaraju SV, and Marx GE
- Subjects
- Adult, Female, Humans, Male, Middle Aged, United States epidemiology, Bartonella quintana isolation & purification, Bartonella quintana genetics, Ill-Housed Persons, Kidney Transplantation adverse effects, Tissue Donors, Transplant Recipients, Trench Fever transmission, Trench Fever diagnosis, Trench Fever microbiology
- Abstract
Bartonella quintana infection can cause severe disease that includes clinical manifestations such as endocarditis, chronic bacteremia, and vasoproliferative lesions of the skin and viscera. B. quintana bacteria is transmitted by the human body louse (Pediculus humanus corporis) and is associated with homelessness and limited access to hygienic services. We report B. quintana infection in 2 kidney transplant recipients in the United States from an organ donor who was experiencing homelessness. One infection manifested atypically, and the other was minimally symptomatic; with rapid detection, both recipients received timely treatment and recovered. B. quintana was identified retrospectively in an archived donor hematoma specimen, confirming the transmission link. Information about the organ donor's housing status was critical to this investigation. Evaluation for B. quintana infection should be considered for solid organ transplant recipients who receive organs from donors with a history of homelessness or of body lice infestation.
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- 2024
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205. Sarcoma Cells Secrete Hypoxia-Modified Collagen VI to Weaken the Lung Endothelial Barrier and Promote Metastasis.
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Liu Y, Murazzi I, Fuller AM, Pan H, Irizarry-Negron VM, Devine A, Katti R, Skuli N, Ciotti GE, Pak K, Pack MA, Simon MC, Weber K, Cooper K, and Eisinger-Mathason TSK
- Subjects
- Humans, Animals, Mice, Collagen Type VI genetics, Collagen Type VI metabolism, Endothelial Cells metabolism, Zebrafish metabolism, Actins, Integrin beta1, Hypoxia, Lung pathology, Sarcoma metabolism, Lung Neoplasms
- Abstract
Intratumoral hypoxia correlates with metastasis and poor survival in patients with sarcoma. Using an impedance sensing assay and a zebrafish intravital microinjection model, we demonstrated here that the hypoxia-inducible collagen-modifying enzyme lysyl hydroxylase PLOD2 and its substrate collagen type VI (COLVI) weaken the lung endothelial barrier and promote transendothelial migration. Mechanistically, hypoxia-induced PLOD2 in sarcoma cells modified COLVI, which was then secreted into the vasculature. Upon reaching the apical surface of lung endothelial cells, modified COLVI from tumor cells activated integrin β1 (ITGβ1). Furthermore, activated ITGβ1 colocalized with Kindlin2, initiating their interaction with F-actin and prompting its polymerization. Polymerized F-actin disrupted endothelial adherens junctions and induced barrier dysfunction. Consistently, modified and secreted COLVI was required for the late stages of lung metastasis in vivo. Analysis of patient gene expression and survival data from The Cancer Genome Atlas (TCGA) revealed an association between the expression of both PLOD2 and COLVI and patient survival. Furthermore, high levels of COLVI were detected in surgically resected sarcoma metastases from patient lungs and in the blood of tumor-bearing mice. Together, these data identify a mechanism of sarcoma lung metastasis, revealing opportunities for therapeutic intervention., Significance: Collagen type VI modified by hypoxia-induced PLOD2 is secreted by sarcoma cells and binds to integrin β1 on endothelial cells to induce barrier dysfunction, which promotes sarcoma vascular dissemination and metastasis., (©2024 American Association for Cancer Research.)
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- 2024
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206. Anisometric Cell/Dysplastic Lipomas in a Retinoblastoma Survivor: Report of a Case with Review of the Literature.
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Malik F and Cooper K
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- Male, Humans, Child, Adult, Biomarkers, Tumor analysis, Hyperplasia, Retinoblastoma genetics, Soft Tissue Neoplasms pathology, Lipoma genetics, Lipoma pathology, Liposarcoma pathology, Retinal Neoplasms
- Abstract
Different authors have recently described a subtype of lipoma characterized by variation of adipocyte size, single cell fat necrosis, and a subset with minimal to mild nuclear atypia, and termed these as anisometric cell/dysplastic lipoma (AC/DL). These lipomas follow a benign course and rarely recur. In 3 examples, AC/DL has occurred in patients with childhood retinoblastoma (RB). We report another such example where multiple AC/DL occurred in the neck and back of a 30-year-old male who had germline RB1 gene deletion and bilateral RB in infancy. On excision, all tumors histologically showed similar morphology of adipocyte anisometry, focal single cell necrosis with surrounding binucleated or multinucleated histiocytes, hyperchromatic and minimally atypical lipocyte nuclei, vacuolated Lockhern change, rare foci of fibromyxoid change, occasional mononuclear cell clusters around capillaries, and loss of RB1 immunostaining. Unequivocal atypical cells, lipoblasts, floret-nucleated or multinucleated giant cells were absent. Molecular analysis of tumor cells showed monoallelic RB1 gene loss without amplification of MDM2 and CDK4 genes. Short-term follow up did not show tumor recurrence. AC/DLs in RB survivors are characterized by multiplicity, unifying histology, and benign course. Their biology appears distinct from ordinary lipomas, spindle cell lipomas, and atypical lipomatous tumors., Competing Interests: Declaration of Conflicting InterestsThe author(s) declared no potential conflicts of interest with respect to the research, authorship, and/or publication of this article.
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- 2023
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207. Atypical Spindle Cell and Pleomorphic Lipomatous Tumor of the Ocular Adnexa: Two Cases of a Rare Entity.
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Ulloa-Padilla JP, Rubio RH, Zhou S, Carrasco J, Watson A, Jiang W, Cooper K, Morgenstern K, and Milman T
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- Humans, In Situ Hybridization, Fluorescence, Biomarkers, Tumor, Diagnosis, Differential, Lipoma diagnosis, Liposarcoma diagnosis, Biological Products
- Abstract
Atypical spindle cell and pleomorphic lipomatous tumor (ASCPLT) is a rare lipomatous neoplasm that was recently introduced into the World Health Organization Classification of Soft Tissue and Bone tumors as a distinct entity. ASCPLT has potential for local recurrence but does not metastasize. This biologic behavior separates ASCPLT from its morphologic mimics. Ocular adnexal ASCPLT has not been previously reported. Described herein are two patients with ASCPLT. The subcutaneous orbital rim lesion featured markedly pleomorphic spindle and multinucleated cells. The eyelid lesion was dominated by atypical spindle cells in a background of mature adipocytes. Both neoplasms demonstrated infiltrative margins, rare mitotic figures, immunoreactivity for CD34 and loss of Rb1, and the absence of MDM2 amplification by fluorescence in situ hybridization. Recognition of ASCPLT in the differential of ocular adnexal neoplasms may lead to a re-evaluation of morphologically similar tumors, which may have varied biologic behavior and warrant a different management approach., (Copyright © 2022 The American Society of Ophthalmic Plastic and Reconstructive Surgery, Inc.)
- Published
- 2023
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208. S100 and CD34 Expressing Mesenchymal Neoplasm With Rare PLEKHH2::ALK Fusion and Response to ALK Inhibition.
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Coppock JD, Schneider MA, Surrey LF, Karakousis GC, Maki RG, and Cooper K
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- Adult, Cytoskeletal Proteins genetics, Female, Gene Fusion, Humans, Oncogene Proteins, Fusion genetics, Protein Kinase Inhibitors therapeutic use, Receptor Protein-Tyrosine Kinases genetics, S100 Proteins, Young Adult, Adenocarcinoma of Lung, Lung Neoplasms pathology, Neoplasms, Connective and Soft Tissue
- Abstract
The PLEKHH2::ALK fusion is a rarely reported gene fusion identified predominantly in lung adenocarcinomas. Tumors with this fusion have been reported to be of durable response to ALK inhibitors. We herein present the case of a 21-year-old woman with a histomorphologically heterogenous mesenchymal neoplasm of the pelvis, expressing both s100 and CD34, with subsequently identified PLEKHH2::ALK fusion. To our knowledge, only a single mesenchymal neoplasm with this gene fusion has been previously reported. We propose that this tumor represents one with a novel ALK fusion in the emerging family of s100 and CD34 expressing mesenchymal neoplasms with oncogenic kinase alterations akin to NTRK -rearranged mesenchymal neoplasms, rather than inflammatory myofibroblastic tumor. Importantly, this tumor demonstrated a significant response to the ALK inhibitor brigatinib., Competing Interests: Conflicts of Interest and Source of Funding: The authors have disclosed that they have no significant relationships with, or financial interest in, any commercial companies pertaining to this article., (Copyright © 2022 Wolters Kluwer Health, Inc. All rights reserved.)
- Published
- 2022
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209. Focal reactive periostitis ossificans in a long bone: radiologic and pathologic findings.
- Author
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Levy JL, Louka KL, Cooper K, Weber KL, and Dianat S
- Abstract
Florid reactive periostitis ossificans (FRPO) is a benign juxta-cortical lesion of unknown etiology which most commonly occurs in the hands and feet. We report the radiographic, CT, and MR features of a pathologically confirmed FRPO in the distal femur, a location in which only a handful of cases has been reported. A 26-year-old male who presented with distal thigh pain initially underwent radiograph and CT, which illustrated a well-circumscribed, ossified lesion associated with the cortex of the femur without contiguity with the medullary canal. A subsequent MRI demonstrated heterogeneous signal intensity corresponding to the ossified portion of the lesion with a T2 hyperintense cartilaginous cap and surrounding edema. The lesion was surgically excised and pathologic diagnosis of FRPO, a mixture of osteoid, mature bone, cartilage and fibrous tissue, with associated inflammatory cells, was confirmed. Follow up four months after surgery revealed significant improvement in the patient's pain., (© 2021 The Authors. Published by Elsevier Inc. on behalf of University of Washington.)
- Published
- 2021
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210. A subset of sinonasal undifferentiated carcinoma is associated with transcriptionally active high-risk human papillomavirus by in situ hybridization: a clinical and pathologic analysis.
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Baraban E, Tong CCL, Adappa ND, and Cooper K
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- Adult, Aged, Cyclin-Dependent Kinase Inhibitor p16 analysis, Female, Humans, In Situ Hybridization, Male, Middle Aged, Papillomaviridae, Retrospective Studies, Carcinoma virology, Maxillary Sinus Neoplasms virology, Papillomavirus Infections complications
- Abstract
Sinonasal undifferentiated carcinoma (SNUC) is an aggressive malignancy with a poor prognosis, and pathologically, it is a diagnosis of exclusion. Rendering this diagnosis can be challenging in practice because of the large number of diverse entities in the differential diagnosis. We encountered an index case of a sinonasal carcinoma otherwise diagnosable as SNUC which, on further investigation, demonstrated strong and diffuse P16 expression, as well as diffuse expression of high-risk human papillomavirus (hrHPV) RNA by in situ hybridization (ISH). We therefore hypothesized that a subset of cases previously diagnosed as SNUC may in fact harbor transcriptionally active hrHPV. We further investigated a cohort of 25 SNUC cases in our pathology archives and performed ISH for hrHPV RNA on cases that demonstrated >70% nuclear and cytoplasmic P16 expression, criteria which, in other anatomic sites, correlates strongly with the presence of hrHPV. Twelve of 25 SNUC cases were P16 positive, and of these, 5 were positive for hrHPV by ISH. Thus, 20% of all SNUC cases in this cohort harbored transcriptionally active hrHPV. Herein, we report a clinical and pathologic analysis of these cases, including differential diagnostic considerations and comparison of their clinical behavior with SNUC cases that are negative for hrHPV by ISH., (Copyright © 2020 Elsevier Inc. All rights reserved.)
- Published
- 2020
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211. Penn Medicine Head and Neck Cancer Service Line COVID-19 management guidelines.
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Weinstein GS, Cohen R, Lin A, O'Malley BW Jr, Lukens J, Swisher-McClure S, Shanti RM, Newman JG, Parhar HS, Tasche K, Brody RM, Chalian A, Cannady S, Palmer JN, Adappa ND, Kohanski MA, Bauml J, Aggarwal C, Montone K, Livolsi V, Baloch ZW, Jalaly JB, Cooper K, Rajasekaran K, Loevner L, and Rassekh C
- Subjects
- Ambulatory Care standards, COVID-19, Combined Modality Therapy, Continuity of Patient Care standards, Coronavirus Infections diagnosis, Head and Neck Neoplasms diagnosis, Humans, Multi-Institutional Systems, Otorhinolaryngologic Surgical Procedures standards, Palliative Care standards, Patient Safety, Pennsylvania, Personal Protective Equipment, Pneumonia, Viral diagnosis, SARS-CoV-2, Terminal Care standards, Tertiary Care Centers, Betacoronavirus, Coronavirus Infections prevention & control, Head and Neck Neoplasms therapy, Infection Control standards, Medical Oncology standards, Pandemics prevention & control, Pneumonia, Viral prevention & control
- Abstract
Introduction: The COVID-19 pandemic caused by the severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) virus has altered the health care environment for the management of head and neck cancers. The purpose of these guidelines is to provide direction during the pandemic for rational Head and Neck Cancer management in order to achieve a medically and ethically appropriate balance of risks and benefits., Methods: Creation of consensus document., Results: The process yielded a consensus statement among a wide range of practitioners involved in the management of patients with head and neck cancer in a multihospital tertiary care health system., Conclusions: These guidelines support an ethical approach for the management of head and neck cancers during the COVID-19 epidemic consistent with both the local standard of care as well as the head and neck oncological literature., (© 2020 Wiley Periodicals, Inc.)
- Published
- 2020
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212. 68Ga-DOTATATE Uptake in an Endolymphatic Sac Tumor: Radiologic-Pathologic Correlation.
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Lou R, Lazor JW, Baraban E, Ware JB, Cooper K, and Pantel AR
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- Adult, Aged, Diagnosis, Differential, Ear Neoplasms metabolism, Endolymphatic Sac metabolism, Female, Humans, Magnetic Resonance Imaging, Male, Middle Aged, Paraganglioma diagnosis, Receptors, Somatostatin metabolism, Ear Neoplasms diagnostic imaging, Ear Neoplasms pathology, Endolymphatic Sac diagnostic imaging, Endolymphatic Sac pathology, Organometallic Compounds metabolism, Positron Emission Tomography Computed Tomography
- Abstract
After dedicated CT and MRI, Ga-DOTATATE PET/CT was performed in a patient with a temporal bone mass with primary diagnostic considerations of an endolymphatic sac tumor versus a glomus jugulotympanicum paraganglioma. The Ga-DOTATATE PET showed mild radiotracer uptake in the mass (SUVmax, 10.9). After surgical resection, pathology revealed an endolymphatic sac tumor. Immunohistochemical staining demonstrated somatostatin receptor type 2A expression in the vasculature of the mass, but not in the tumor cells.
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- 2020
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213. Histiocytic and dendritic cell neoplasms of the mediastinum.
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Baraban E and Cooper K
- Abstract
In this review, we discuss a logical approach to diagnosis of histiocytic and dendritic cell lesions of the mediastinum. We break down the differential diagnosis between true neoplasms of histiocytic and dendritic cells [Rosai-Dorfman disease (RDD), Langerhans cell histiocytosis (LCH), and follicular dendritic cell sarcoma (FDCS)] versus selected neoplasms of other lineages which frequently attract non-neoplastic histiocytes or resemble them morphologically (carcinoma, melanoma, sarcoma, germinoma, mesothelioma, and lymphoma). As neoplasms in the latter category are more common, they should be stringently excluded before diagnosing a lesion in the first group, particularly given enormous differences in clinical management. We also consider histiocytic sarcoma (HS), an extremely rare lesion which, in some cases is likely of intrinsic histiocytic differentiation, whereas in others represents clonal evolution from an underlying non-histiocytic neoplasm., Competing Interests: Conflicts of Interest: The authors have completed the ICMJE uniform disclosure form (available at http://dx.doi.org/10.21037/med-20-31). The series “Mediastinal Sarcomas” was commissioned by the editorial office without any funding or sponsorship. The authors have no other conflicts of interest to declare., (2020 Mediastinum. All rights reserved.)
- Published
- 2020
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214. Dynamic Aqueous Multiphase Reaction System for One-Pot CRISPR-Cas12a-Based Ultrasensitive and Quantitative Molecular Diagnosis.
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Yin K, Ding X, Li Z, Zhao H, Cooper K, and Liu C
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- Human papillomavirus 16 genetics, Human papillomavirus 18 genetics, Humans, Water chemistry, Bacterial Proteins genetics, CRISPR-Associated Proteins genetics, CRISPR-Cas Systems genetics, DNA, Viral genetics, Endodeoxyribonucleases genetics, Molecular Diagnostic Techniques, Nucleic Acid Amplification Techniques, Real-Time Polymerase Chain Reaction
- Abstract
Recently, CRISPR-Cas technology has opened a new era of nucleic acid-based molecular diagnostics. However, current CRISPR-Cas-based nucleic acid biosensing has a lack of the quantitative detection ability and typically requires separate manual operations. Herein, we reported a dynamic aqueous multiphase reaction (DAMR) system for simple, sensitive and quantitative one-pot CRISPR-Cas12a based molecular diagnosis by taking advantage of density difference of sucrose concentration. In the DAMR system, recombinase polymerase amplification (RPA) and CRISPR-Cas12a derived fluorescent detection occurred in spatially separated but connected aqueous phases. Our DAMR system was utilized to quantitatively detect human papillomavirus (HPV) 16 and 18 DNAs with sensitivities of 10 and 100 copies within less than 1 h. Multiplex detection of HPV16/18 in clinical human swab samples were successfully achieved in the DAMR system using 3D-printed microfluidic device. Furthermore, we demonstrated that target DNA in real human plasma samples can be directly amplified and detected in the DAMR system without complicated sample pretreatment. As demonstrated, the DAMR system has shown great potential for development of next-generation point-of-care molecular diagnostics.
- Published
- 2020
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215. The significance of mucinous metaplasia in Warthin tumor: a frequent occurrence and potential pitfall.
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Zhang X, Baloch ZW, Cooper K, Zhang PJ, Puthiyaveettil R, and LiVolsi VA
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- Adenolymphoma genetics, Adenolymphoma surgery, Aged, Biomarkers, Tumor genetics, Carmine, Coloring Agents, Databases, Factual, Diagnosis, Differential, Female, Gene Rearrangement, Genetic Predisposition to Disease, Humans, In Situ Hybridization, Fluorescence, Male, Metaplasia, Middle Aged, Phenotype, Predictive Value of Tests, Retrospective Studies, Staining and Labeling, Trans-Activators genetics, Tumor Burden, Adenolymphoma pathology, Epithelial Cells pathology
- Abstract
Mucinous metaplasia in Warthin tumor (WT) is a recognized phenomenon. Nevertheless, its presence can create a diagnostic challenge in the distinction from the newly proposed variant of mucoepidermoid carcinoma (MEC), Warthin-like MEC. In this study, we evaluated the significance and diagnostic relevance of mucinous metaplasia in WTs. A total of 30 WTs diagnosed based on resection specimens formed the basis of this retrospective study. Mucicarmine staining was performed to identify mucinous metaplasia, and fluorescence in situ hybridization (FISH) analysis was used to detect MAML2 gene rearrangement. After review, one MAML2 rearranged case was reclassified as Warthin-like MEC as the classic bilayered epithelium in WT was not identified. The diagnosis of WT was confirmed in the remaining 29 cases. Mucinous metaplasia was encountered in 24 WTs (83%), with 14% (4/29) having an abundant amount. We found that mucinous metaplasia correlated with tumor size (p < 0.05). Age and sex distribution were similar in WT cases with or without mucinous metaplasia. In addition, neither the presence of squamous metaplasia nor the time interval between fine-needle aspiration and surgery was related to mucinous metaplasia (p > 0.05). The MAML2 FISH analyses performed in 18 WTs with variable amounts of mucinous metaplasia were negative for rearrangement. In conclusion, mucinous metaplasia is fairly common in WTs and shows a significant correlation with tumor size. Therefore, caution should be taken to avoid overinterpretation of WT with mucinous metaplasia as MEC in cases showing the classic bilayered oncocytic lining epithelium., (Published by Elsevier Inc.)
- Published
- 2020
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216. Potential Diagnostic Pitfalls in Evaluating Immunohistochemistry for Cervical Myofibroblastomas.
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Song S, Ziober A, and Cooper K
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- Adult, Aged, Cohort Studies, Diagnosis, Differential, Endothelial Cells metabolism, Endothelial Cells pathology, Female, Humans, Immunohistochemistry, Middle Aged, Neoplasms, Muscle Tissue metabolism, Neoplasms, Muscle Tissue pathology, Retrospective Studies, Uterine Cervical Neoplasms metabolism, Uterine Cervical Neoplasms pathology, Antigens, CD34 metabolism, Biomarkers, Tumor metabolism, Desmin metabolism, Neoplasms, Muscle Tissue diagnosis, Uterine Cervical Neoplasms diagnosis
- Abstract
Cervicovaginal myofibroblastoma (CVM) is a rare benign mesenchymal tumor of the lower female genital tract that shows chromosomal loss of 13q14 (RB1 gene located in this region). The aim of this study was to investigate the utility of immunohistochemistry (IHC) for desmin, CD34, and Rb in diagnosing CVM. All cervical polyps diagnosed from July 2016 to July 2017 were retrospectively reviewed. Cases showing morphologic myofibroblastic differentiation were evaluated by IHC for desmin, CD34, and Rb. Desmin and CD34 staining was recorded as positive or negative. Rb nuclear staining was graded as follows: 0 (<10%), 1 (10%-25%), 2 (>25%-50%), 3 (>50%-75%), or 4 (>75%). Intact nuclear expression of Rb in endothelial cells served as an internal positive control. IHC was performed on 76 cases with 14 excluded from the final cohort due to poor Rb internal control. A total of 61/62 (98.4%) cases were positive for desmin and CD34 with the following Rb distribution: grade 0 (n=53, 86.9%), grade 1 (n=5, 8.2%), grade 2 (n=2, 3.3%), and grade 3 (n=1, 1.6%). One case negative for desmin and CD34 showed grade 3 Rb staining. Upon rereview of the histology, 7/175 cases (4%) were morphologically and immunohistochemically compatible with CVM (desmin and CD34+ grade 0 Rb staining). CVM is a rare and under-recognized entity (4% of cervical polyps) for which morphology remains the mainstay of diagnosis. IHC reliance serves as a potential diagnostic pitfall as 86.9% of cases showing myofibroblastic differentiation demonstrated the staining pattern of desmin and CD34 positivity and Rb deficiency.
- Published
- 2019
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217. Pathogenesis of Testicular Germ Cell Neoplasia: A Conceptual Approach.
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Baraban EG and Cooper K
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- Chromosome Aberrations, Germ Cells pathology, Humans, Neoplasms, Germ Cell and Embryonal diagnosis, Neoplasms, Germ Cell and Embryonal genetics, Testicular Neoplasms diagnosis, Testicular Neoplasms genetics, Biomarkers, Tumor genetics, Endodermal Sinus Tumor pathology, Neoplasms, Germ Cell and Embryonal pathology, Testicular Neoplasms pathology
- Abstract
Testicular germ cell tumors are a diverse group of neoplasms, consisting of the prepubertal type 1 tumors, pure teratoma, and pure yolk sac tumor, the type 2 tumors, which are biologically malignant, preceded by germ cell neoplasia in situ, and harbor chromosome 12p abnormalities, and the type 3 tumor, spermatocytic tumor, which features chromosome 9p amplification. These arise in distinct clinical settings, and harbor distinct genetic abnormalities, immunohistochemical properties, and morphologic features. Here we have attempted to unify embryology, morphology, immunohistochemistry, and genetics in order to distill this fascinating group of neoplasms into what we hope is a useful framework for understanding their classification.
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- 2019
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218. Whole Slide Imaging Versus Microscopy for Primary Diagnosis in Surgical Pathology: A Multicenter Blinded Randomized Noninferiority Study of 1992 Cases (Pivotal Study).
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Mukhopadhyay S, Feldman MD, Abels E, Ashfaq R, Beltaifa S, Cacciabeve NG, Cathro HP, Cheng L, Cooper K, Dickey GE, Gill RM, Heaton RP Jr, Kerstens R, Lindberg GM, Malhotra RK, Mandell JW, Manlucu ED, Mills AM, Mills SE, Moskaluk CA, Nelis M, Patil DT, Przybycin CG, Reynolds JP, Rubin BP, Saboorian MH, Salicru M, Samols MA, Sturgis CD, Turner KO, Wick MR, Yoon JY, Zhao P, and Taylor CR
- Subjects
- Humans, Microscopy, Observer Variation, Reproducibility of Results, Single-Blind Method, Histocytological Preparation Techniques methods, Pathology, Surgical methods
- Abstract
Most prior studies of primary diagnosis in surgical pathology using whole slide imaging (WSI) versus microscopy have focused on specific organ systems or included relatively few cases. The objective of this study was to demonstrate that WSI is noninferior to microscopy for primary diagnosis in surgical pathology. A blinded randomized noninferiority study was conducted across the entire range of surgical pathology cases (biopsies and resections, including hematoxylin and eosin, immunohistochemistry, and special stains) from 4 institutions using the original sign-out diagnosis (baseline diagnosis) as the reference standard. Cases were scanned, converted to WSI and randomized. Sixteen pathologists interpreted cases by microscopy or WSI, followed by a wash-out period of ≥4 weeks, after which cases were read by the same observers using the other modality. Major discordances were identified by an adjudication panel, and the differences between major discordance rates for both microscopy (against the reference standard) and WSI (against the reference standard) were calculated. A total of 1992 cases were included, resulting in 15,925 reads. The major discordance rate with the reference standard diagnosis was 4.9% for WSI and 4.6% for microscopy. The difference between major discordance rates for microscopy and WSI was 0.4% (95% confidence interval, -0.30% to 1.01%). The difference in major discordance rates for WSI and microscopy was highest in endocrine pathology (1.8%), neoplastic kidney pathology (1.5%), urinary bladder pathology (1.3%), and gynecologic pathology (1.2%). Detailed analysis of these cases revealed no instances where interpretation by WSI was consistently inaccurate compared with microscopy for multiple observers. We conclude that WSI is noninferior to microscopy for primary diagnosis in surgical pathology, including biopsies and resections stained with hematoxylin and eosin, immunohistochemistry and special stains. This conclusion is valid across a wide variety of organ systems and specimen types.
- Published
- 2018
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219. Epigenetic Alterations in Bone and Soft Tissue Tumors.
- Author
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Wojcik J and Cooper K
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- Biomarkers, Tumor metabolism, Bone Neoplasms metabolism, Bone Neoplasms pathology, Chromatin Assembly and Disassembly, Gene Expression Regulation, Neoplastic, Genetic Predisposition to Disease, Humans, Neoplasm Proteins genetics, Neoplasm Proteins metabolism, Phenotype, Polycomb Repressive Complex 2 genetics, Polycomb Repressive Complex 2 metabolism, Repressor Proteins genetics, Repressor Proteins metabolism, SMARCB1 Protein genetics, SMARCB1 Protein metabolism, Soft Tissue Neoplasms metabolism, Soft Tissue Neoplasms pathology, Transcription Factors metabolism, Biomarkers, Tumor genetics, Bone Neoplasms genetics, Epigenesis, Genetic, Mutation, Soft Tissue Neoplasms genetics, Transcription Factors genetics
- Abstract
Human malignancies are driven by heritable alterations that lead to unchecked cellular proliferation, invasive growth and distant spread. Heritable changes can arise from changes in DNA sequence, or, alternatively, through altered gene expression rooted in epigenetic mechanisms. In recent years, high-throughput sequencing of tumor genomes has revealed a central role for mutations in epigenetic regulatory complexes in oncogenic processes. Through interactions with or direct modifications of chromatin, these proteins help control the accessibility of genes, and thus the transcriptional profile of a cell. Dysfunction in these proteins can lead to activation of oncogenic pathways or silencing of tumor suppressors. Although epigenetic regulators are altered across a broad spectrum of human malignancies, they play a particularly central role in tumors of mesenchymal and neuroectodermal origin. This review will focus on recent advances in the understanding of the molecular pathogenesis of a subset of tumors in which alterations in the polycomb family of chromatin modifying complexes, the SWI/SNF family of nucleosome remodelers, and histones play a central role in disease pathogenesis. Although this review will focus predominantly on the molecular mechanisms underlying these tumors, each section will also highlight areas in which an understanding of the molecular pathogenesis of these diseases has led to the adoption of novel immunohistochemical and molecular markers.
- Published
- 2017
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220. Can the Misinterpretation Amendment Rate Be Used as a Measure of Interpretive Error in Anatomic Pathology?: Implications of a Survey of the Directors of Anatomic and Surgical Pathology.
- Author
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Parkash V, Fadare O, Dewar R, Nakhleh R, and Cooper K
- Subjects
- Humans, Statistics as Topic, Biopsy methods, Diagnostic Errors statistics & numerical data, Pathology, Clinical methods, Pathology, Surgical methods, Surveys and Questionnaires
- Abstract
A repeat survey of the Association of the Directors of Anatomic and Surgical Pathology, done 10 years after the original was used to assess trends and variability in classifying scenarios as errors, and the preferred post signout report modification for correcting error by the membership of the Association of the Directors of Anatomic and Surgical Pathology. The results were analyzed to inform on whether interpretive amendment rates might act as surrogate measures of interpretive error in pathology. An analyses of the responses indicated that primary level misinterpretations (benign to malignant and vice versa) were universally qualified as error; secondary-level misinterpretations or misclassifications were inconsistently labeled error. There was added variability in the preferred post signout report modification used to correct report alterations. The classification of a scenario as error appeared to correlate with severity of potential harm of the missed call, the perceived subjectivity of the diagnosis, and ambiguity of reporting terminology. Substantial differences in policies for error detection and optimal reporting format were documented between departments. In conclusion, the inconsistency in labeling scenarios as error, disagreement about the optimal post signout report modification for the correction of the error, and variability in error detection policies preclude the use of the misinterpretation amendment rate as a surrogate measure for error in anatomic pathology. There is little change in uniformity of definition, attitudes and perception of interpretive error in anatomic pathology in the last 10 years.
- Published
- 2017
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221. Recently described entities in the gynaecological tract.
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Reyes MC and Cooper K
- Subjects
- Diagnosis, Differential, Endometrial Neoplasms diagnosis, Endometrial Stromal Tumors diagnosis, Female, Humans, Uterine Cervical Neoplasms diagnosis, Adenocarcinoma pathology, Biomarkers, Tumor metabolism, Endometrial Neoplasms pathology, Endometrial Stromal Tumors pathology, Uterine Cervical Neoplasms pathology
- Abstract
In recent years there have been significant advances in our understanding of female genital tract tumours due to the fact that new molecular abnormalities and translocations have been identified in certain neoplasms. Also, terminology of various lesions in the gynaecological tract has changed and a couple of new entities have been described.In this review we will highlight some mesenchymal neoplasms including gynaecological perivascular epithelioid cell tumour (PEComa), inflammatory myofibroblastic tumour (IMT) occurring in the uterus and discuss and review terminology of endometrial stromal neoplasms.A recently described entity, gastric type endocervical adenocarcinoma will be reviewed, summarising its most salient microscopic and clinical features. The newly proposed endocervical adenocarcinoma classification system by Silva and collegues will be reviewed as well.Finally, a particular high-grade endometrial carcinoma (undifferentiated endometrial carcinoma) will be discussed highlighting the importance of its recognition and differential diagnosis.
- Published
- 2015
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- View/download PDF
222. An update on vulvar intraepithelial neoplasia: terminology and a practical approach to diagnosis.
- Author
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Reyes MC and Cooper K
- Subjects
- Adult, Aged, Carcinoma in Situ metabolism, Carcinoma in Situ virology, Carcinoma, Squamous Cell metabolism, Carcinoma, Squamous Cell virology, Cell Nucleus metabolism, Cyclin-Dependent Kinase Inhibitor p16, Diagnosis, Differential, Female, Humans, Immunohistochemistry, Ki-67 Antigen metabolism, Middle Aged, Neoplasm Grading, Neoplasm Proteins metabolism, Neurodermatitis metabolism, Neurodermatitis virology, Papillomavirus Infections metabolism, Papillomavirus Infections virology, Tumor Suppressor Protein p53 metabolism, Vulvar Lichen Sclerosus metabolism, Vulvar Lichen Sclerosus virology, Vulvar Neoplasms metabolism, Vulvar Neoplasms virology, Carcinoma in Situ pathology, Carcinoma, Squamous Cell pathology, Neurodermatitis pathology, Papillomavirus Infections pathology, Vulvar Lichen Sclerosus pathology, Vulvar Neoplasms pathology
- Abstract
There are two distinct types of vulvar intraepithelial neoplasia (VIN), which differ in their clinical presentation, aetiology, pathogenesis and histological/immunophenotypical features. One form driven by high-risk human papilloma virus infection usually occurs in young women and has been termed classic or usual VIN (uVIN). The other, not related to viral infection, occurs in postmenopausal women with chronic skin conditions such as lichen sclerosus and lichen simplex chronicus and is termed differentiated or simplex-type VIN. The latter is the precursor lesion of the most common type of squamous cell carcinoma (SCC) in the vulva, namely keratinizing SCC (representing 60% of cases). In contrast, uVIN usually gives rise to basaloid or warty SCC (40% of cases). The histological features of uVIN are similar to those of high grade lesions encountered in other lower anogenital tract sites (hyperchomatic nuclei with high nuclear to cytoplasmic ratios and increased mitotic activity). However, differentiated VIN has very subtle histopathological changes and often escapes diagnosis. Since uVIN is driven by high-risk human papilloma virus infections, p16 immunohistochemistry is diffusely positive in these lesions and is characterized with a high Ki-67 proliferation index. In contrast, differentiated or simplex-type VIN is consistently negative for p16 and the majority of the cases harbour TP53 mutations, correlating with p53 positivity by immunohistochemistry.
- Published
- 2014
- Full Text
- View/download PDF
223. Evidence that alpha-9 human papillomavirus infections are a major etiologic factor for oropharyngeal carcinoma in black South Africans.
- Author
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Paquette C, Evans MF, Meer SS, Rajendran V, Adamson CS, and Cooper K
- Subjects
- Adult, Aged, Aged, 80 and over, Base Sequence, Black People, Cyclin-Dependent Kinase Inhibitor p16 analysis, Cyclin-Dependent Kinase Inhibitor p16 genetics, DNA, Viral genetics, Female, Human papillomavirus 16 genetics, Humans, Immunohistochemistry, In Situ Hybridization, Male, Middle Aged, Molecular Sequence Data, Papillomaviridae genetics, Papillomavirus Infections complications, Reverse Transcriptase Polymerase Chain Reaction, South Africa, Carcinoma, Squamous Cell virology, Oropharyngeal Neoplasms virology, Papillomavirus Infections virology
- Abstract
Human papillomavirus (HPV) infection, most commonly genotype 16 of the alpha-9 family, is implicated in the etiology of a subset of oropharyngeal squamous cell carcinomas (OPSC) worldwide. Data are scarce regarding OPSC in South Africans, and three prior studies suggest no significant etiologic role for HPV. We aimed to investigate for evidence of HPV etiology in OPSCs from black South Africans by polymerase chain reaction (PCR) methodologies with determination of HPV subtype by sequencing, in situ hybridization (ISH), and p16INK4a immunohistochemistry (IHC), as a surrogate marker for an HPV-driven tumor. It was hypothesized that HPV-driven tumors would be positive by PCR plus IHC and/or ISH whereas OPSCs with HPV background infections (HPV-passenger) would be positive by PCR alone. Formalin-fixed, paraffin embedded tissues from 51 OPSCs collected between 2005 and 2010 from 41 patients were analyzed for HPV by GP5?6? PCR (targeting the HPV L1 region), pU-1M/pU- 2R PCR (targeting the HPV E6/E7 region) and HPV-31 specific PCR (targeting the E5 region), chromogenic ISH, and p16INK4a IHC. All cases positive by PCR were subject to sequencing to determine HPV genotype. The patient mean age was 58.0 years and 88 % were male. Of the 51 evaluable tumors, 48 (94.1 %) were positive for HPV DNA by PCR: 25 (49.1 %) met criteria for an HPV-driven tumor, 23 (45.1 %) for HPV-passenger, and 3 (5.9 %) were HPV unrelated. Sequencing of the PCR-positive cases revealed the following genotypes: combined HPV-16 and 31 (41.7 %), HPV-31 (25.0 %), HPV-16 (22.9 %), combined HPV-16 and 18 (6.3 %), and a single case each of HPV 18 and HPV 33. Studies via ISH were negative in all cases. In accordance with worldwide trends but contrary to prior South African data, HPV likely plays an etiologic role in a significant subset (at least 49.1 %) of OPSC in black South Africans. We found that the alpha-9 HPV family, particularly HPV-16 and 31 either in combination or separately, to predominate in our sample tumors. The use of multiple PCR primers increased sensitivity of viral detection, and a HPV-31 specific primer confirmed the presence of this genotype in many samples. Further studies including HPV E6/E7 mRNA assays are needed to better elucidate the pathogenic role of HPV in black South African OPSCs.
- Published
- 2013
- Full Text
- View/download PDF
224. Myxoid solitary fibrous tumor: a study of three cases.
- Author
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Dantey K and Cooper K
- Subjects
- Adult, Aged, Biomarkers, Tumor analysis, Female, Humans, Immunohistochemistry, Male, Middle Aged, Soft Tissue Neoplasms metabolism, Solitary Fibrous Tumors metabolism, Soft Tissue Neoplasms pathology, Solitary Fibrous Tumors pathology
- Abstract
Limited myxoid areas are usually encountered in solitary fibrous tumor (SFT), but SFT with abundant myxoid stroma has only been reported occasionally. Myxoid SFT is defined as having myxoid changes in 50% or more of the tumor. We review the literature on myxoid SFT and add 3 new cases to those previously described. Microscopically, the lesions were composed of spindle cells arranged in a haphazard or storiform pattern in a cellular and hypocellular myxoid background with thin-walled "staghorn" branching vessels. Atypical features (necrosis, hypercellularity, or increased mitotic figures) were not identified. All cases were positive for CD34 and CD99 and had a benign course with a follow-up ranging from 15 to 70 months. Our review suggests that like classical SFT, myxoid SFT is associated with an indolent clinical course and favorable prognosis. Their recognition is crucial to distinguish a variety of myxoid spindle cell neoplasms with different prognoses and treatment options.
- Published
- 2013
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- View/download PDF
225. Embryonal (undifferentiated) sarcoma of the liver with peripheral angiosarcoma differentiation arising in a mesenchymal hamartoma in an adult patient.
- Author
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Tucker SM, Cooper K, Brownschidle S, and Wilcox R
- Subjects
- Aged, Female, Hamartoma metabolism, Hamartoma pathology, Humans, Immunohistochemistry, Liver Diseases metabolism, Liver Diseases pathology, Liver Neoplasms metabolism, Liver Neoplasms pathology, Sarcoma metabolism, Sarcoma pathology, Hamartoma complications, Liver Diseases complications, Liver Neoplasms complications, Sarcoma complications
- Abstract
Embryonal (undifferentiated) sarcoma of the liver (ESL) is a rare malignant neoplasm composed of undifferentiated sarcomatous tissue. We are presenting a case of a 74-year-old woman diagnosed with an ESL arising from a mesenchymal hamartoma of the liver (MHL). Both lesions occur typically in childhood, with only rare reported cases in adults. Histologically, the mass consisted primarily of loose myxoid stroma admixed with bland spindle cells and extensive, cystic (lymphangioma-like) degeneration. However, also present peripherally were markedly atypical cells (including multi-nucleated forms) and hyaline globules. Additionally, atypical cells with a sinusoid tectorial growth pattern were identified, which were positive for CD31, CD34 and Factor VIII. The tumor cells of ESL are classically described as being negative for tissue-specific immunohistochemical markers. However our case demonstrated focal positivity for vascular markers CD31, CD34 and Factor VIII and this along with the sinusoidal tectorial growth pattern, mimicked an angiosarcoma.
- Published
- 2012
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- View/download PDF
226. In situ hybridization signal patterns in recurrent laryngeal squamous papillomas indicate that HPV integration occurs at an early stage.
- Author
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Brooks EG, Evans MF, Adamson CS, Peng Z, Rajendran V, Laucirica R, and Cooper K
- Subjects
- Adolescent, Adult, Aged, 80 and over, Child, Child, Preschool, DNA, Viral genetics, Female, Genotype, Human papillomavirus 11 isolation & purification, Humans, In Situ Hybridization, Infant, Laryngeal Neoplasms pathology, Male, Middle Aged, Neoplasm Recurrence, Local pathology, Neoplasm Staging, Papilloma complications, Papilloma pathology, Papillomavirus Infections complications, Young Adult, Human papillomavirus 11 genetics, Laryngeal Neoplasms virology, Neoplasm Recurrence, Local virology, Papilloma virology, Papillomavirus Infections pathology, Virus Integration genetics
- Abstract
Laryngeal papillomas are benign tumors that frequently recur and can compromise airways. We investigated HPV genotype, physical status, and protein expression in juveniles versus adults. Thirty-five laryngeal papilloma specimens were obtained from ten juveniles (1-16 years) and eleven adults (24-67 years). In cases of recurrent papillomatosis (7 juveniles, 7 adults), the first and last papillomas were assayed. HPV type was determined by GP5+/6+ PCR and dot blot hybridization. In situ hybridization (ISH) was performed on 34 specimens; the data were recorded in terms of diffuse (episomal HPV) and punctate (integrated HPV) signal patterns. Immunohistochemistry for the HPV L1 capsid protein, a marker of HPV productive status, was performed on 32 samples. All samples tested HPV positive: HPV 11 in 2/10 (20.0%) juveniles and 5/11 (45.5%) adults; HPV 6 in 7/10 (70%) juveniles and 5/11 (45.5%) adults; and HPV 6/11 double infection was noted in one juvenile and one adult. ISH signals (punctate ± diffuse) were detected among 7/10 (70.0%) juveniles and 7/11 (63.6%) adults. L1 staining was detected in 1/9 (11.1%) juveniles and 6/10 (60.0%) adults (P = 0.06). These data support the idea that integration of low-risk HPV types into the cell genome is an early and common event in the etiology of juvenile and adult recurrent laryngeal papillomas. Productive HPV infections may be more common in adults; accordingly, constant laryngeal re-infection by HPV shed from a productive lesion may contribute to adult recurrent lesions, whereas the mechanism of papilloma recurrence in juveniles may be more attributable to HPV integration.
- Published
- 2012
- Full Text
- View/download PDF
227. Discrimination of 'driver' and 'passenger' HPV in tonsillar carcinomas by the polymerase chain reaction, chromogenic in situ hybridization, and p16(INK4a) immunohistochemistry.
- Author
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Evans MF, Matthews A, Kandil D, Adamson CS, Trotman WE, and Cooper K
- Subjects
- Adult, Aged, Aged, 80 and over, Biomarkers, Tumor metabolism, Carcinoma, Squamous Cell diagnosis, Carcinoma, Squamous Cell metabolism, DNA, Viral genetics, DNA, Viral metabolism, Female, Genotype, Humans, Male, Middle Aged, Papillomaviridae genetics, Prognosis, Retrospective Studies, Tonsillar Neoplasms diagnosis, Tonsillar Neoplasms metabolism, Carcinoma, Squamous Cell virology, Cyclin-Dependent Kinase Inhibitor p16 metabolism, Immunohistochemistry, In Situ Hybridization, Papillomaviridae classification, Polymerase Chain Reaction, Tonsillar Neoplasms virology
- Abstract
Human papillomavirus (HPV) positive tonsillar squamous cell carcinoma (TSCC) is associated with a favorable clinical outcome. However, the HPV detected in a given tumor may be causal (driver HPV) or an incidental bystander (passenger HPV). There is a need to discriminate these forms of HPV in TSCCs to understand their impact on HPV as a biomarker for use in TSCC patient management. This study has compared the polymerase chain reaction (PCR), chromogenic in situ hybridization (CISH), and p16(INK4a) immunohistochemistry in the assessment of HPV status in TSCC. Archival specimens of TSCC from thirty patients were investigated. HPV was detected by PCR in 25/30 (83.3%) tumors; HPV16 (70.0%) and HPV52 (6.7%) were the most common types. HPV was corroborated by CISH in 22/25 (88.0%) specimens; integrated HPV was implicated by the presence of punctate signals in each of these cases. p16(INK4a) staining was found in 20/22 (90.9%) HPV PCR positive samples; two PCR/CISH HPV positive cases were p16(INK4a) negative and two HPV negative samples were p16(INK4a) positive. These data suggest that a minority of HPV positive TSCCs are positive for passenger HPV and that two or more assays may be required for diagnosing driver HPV status. Further studies are required to exam whether oropharyngeal tumors positive for passenger HPV have a less favorable prognosis than tumors that are driver HPV positive. The clinical significance of TSCCs that test HPV negative/p16(INK4a) positive, PCR and CISH HPV positive/p16 (INK4a) negative, or PCR HPV positive/p16 (INK4a) and CISH negative, also requires further investigation.
- Published
- 2011
- Full Text
- View/download PDF
228. Glypican-3: a novel diagnostic marker for hepatocellular carcinoma and more.
- Author
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Kandil DH and Cooper K
- Subjects
- Carcinoma, Hepatocellular metabolism, Female, Humans, Liver Neoplasms metabolism, Lung Neoplasms diagnosis, Lung Neoplasms metabolism, Male, Ovarian Neoplasms diagnosis, Ovarian Neoplasms metabolism, Testicular Neoplasms diagnosis, Testicular Neoplasms metabolism, Biomarkers, Tumor metabolism, Carcinoma, Hepatocellular diagnosis, Glypicans metabolism, Liver Neoplasms diagnosis
- Abstract
Glypican-3 (GPC3) is a heparan sulfate proteoglycan that plays an important role in cell growth and differentiation. GPC3 function is tissue dependent. In some tissues, GPC3 acts as a tumor suppressor gene, whereas in others, it acts as an oncofetal protein. Studies have shown that GPC3 is a reliable marker for hepatocellular carcinoma. The sensitivity and specificity exceeds both alpha-fetoprotein and hepatocyte-paraffin1. GPC3 immunohistochemistry can aid in the differentiation of testicular germ cell tumors, being expressed in all yolk sac tumors but not in seminomas. GPC3 expression has also been identified in some squamous cell carcinomas of the lung and clear cell carcinomas of the ovary. The role of GPC3 in melanomas is still controversial. This article reviews the current information on the application of GPC3 immunostaining in surgical pathology and cytology.
- Published
- 2009
- Full Text
- View/download PDF
229. Immunohistochemical analysis of ER, PR, Her2 and CK5/6 in infiltrative breast carcinomas in Indian patients.
- Author
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Munjal K, Ambaye A, Evans MF, Mitchell J, Nandedkar S, and Cooper K
- Subjects
- Adult, Aged, Aged, 80 and over, Biomarkers, Tumor metabolism, Breast Neoplasms pathology, Female, Humans, Immunoenzyme Techniques, Middle Aged, Neoplasm Staging, Prognosis, Breast Neoplasms metabolism, Keratin-5 metabolism, Keratin-6 metabolism, Receptor, ErbB-2 metabolism, Receptors, Estrogen metabolism, Receptors, Progesterone metabolism
- Abstract
Aim: Breast cancer is biologically a heterogeneous disease. Patients with the same diagnostic profile have markedly different clinical outcomes. Gene expression studies identified distinct breast cancer subtypes that differ in prognosis. Aim is to identify the immunohistochemical subtypes of breast carcinoma and correlate the results with pathological features associated with adverse prognosis in our study population., Method: We included 107 consecutive cases of invasive breast carcinoma and sub classified using immunohistochemical staining for ER, PR, Her2, and CK5/6 into the following subtypes: luminal A, luminal B, basal-like, Her2(+) and unclassified. Associations between tumor subtypes and tumor characteristics were examined., Results: The proportion of each subtype in our patient population was: luminal A 37.4%, luminal B 11.1%, Her2(+) 29% and basal-like 7.5%. The following variables were significantly associated with IHC breast cancer subtypes: patient age (p<0.05), overall histopathology grade (p<0.001), nuclear grade (p<0.005) and mitotic index (p<0.001). Her2(+) and basal like subtypes were associated with poor differentiation (p<0.01), higher nuclear grade (p<0.05) and high mitotic index (p<0.05)., Conclusions: Our data show a higher proportion of patients in the study population undergo total mastectomy and harbor poorly differentiated, node positive tumors than reported. There was also a relatively high percentage of the Her2(+) subtype (29%).
- Published
- 2009
230. Our approach to squamous intraepithelial lesions of the uterine cervix.
- Author
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Kalof AN and Cooper K
- Subjects
- Cyclin-Dependent Kinase Inhibitor p16 metabolism, Diagnosis, Differential, Female, Humans, Ki-67 Antigen metabolism, Neoplasm Proteins metabolism, Precancerous Conditions metabolism, Uterine Cervical Neoplasms metabolism, Uterine Cervical Dysplasia metabolism, Precancerous Conditions pathology, Uterine Cervical Neoplasms pathology, Uterine Cervical Dysplasia pathology
- Published
- 2007
- Full Text
- View/download PDF
231. Recommendations for quality assurance and improvement in surgical and autopsy pathology.
- Author
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Nakhleh R, Coffin C, and Cooper K
- Subjects
- Humans, Medical Errors prevention & control, Quality Control, Safety Management methods, Societies, Medical, Pathology Department, Hospital standards, Pathology, Surgical standards, Quality Assurance, Health Care standards
- Abstract
Current regulations require that departments of pathology have a structured and active program of quality assurance (QA) and quality improvement (QI), with the goals of enhancing patient safety, minimizing error, ensuring timely delivery of reports, and monitoring physician competence. Types of potential error may evolve over time and, as regulations become progressively more stringent, QA/QI programs need to be constantly updated. The Association of Directors of Anatomic and Surgical Pathology herein provides guidelines for QA and QI in surgical and autopsy pathology.
- Published
- 2006
- Full Text
- View/download PDF
232. Human papillomavirus integration: detection by in situ hybridization and potential clinical application.
- Author
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Evans MF and Cooper K
- Subjects
- Disease Progression, Female, Humans, Papillomavirus Infections complications, Precancerous Conditions genetics, Precancerous Conditions virology, Risk Factors, Tyramine, Uterine Cervical Neoplasms genetics, Uterine Cervical Dysplasia genetics, In Situ Hybridization methods, Papillomaviridae genetics, Papillomavirus Infections genetics, Uterine Cervical Neoplasms virology, Virus Integration genetics, Uterine Cervical Dysplasia virology
- Abstract
Human papillomaviruses (HPVs) are accepted as a necessary cause of cervical neoplasia. However, the benefits of testing simply for high-risk HPV types are limited because of their high prevalence in intraepithelial lesions of all grades, the majority of which regress if left untreated. One factor considered to be of key importance for the progression of intraepithelial lesions to invasive disease is integration of HPV into the host cell genome. Although questions remain about the prevalence of integration amongst pre-invasive lesions, sensitive in situ hybridization techniques utilizing tyramide reagents may aid determination of the significance of HPV infection by enabling routine detection of both high-risk HPV and its physical status. This will provide important data relevant not only to our understanding of the biology of HPV-associated neoplasia, but also potentially to clinical testing for HPV., (Copyright 2003 John Wiley & Sons, Ltd.)
- Published
- 2004
- Full Text
- View/download PDF
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