20,659 results on '"Boyle P"'
Search Results
202. Dental care for cardiac transplant patients in the UK
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O’Donnell, Emma, Kaka, Shazia, Patterson, Helen, and Ann Boyle, Carole
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- 2024
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203. Glowing gels and pipettes aplenty: how do commercial stock image banks portray genetic tests?
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Horton, Rachel, Boyle, Leah, Weller, Susie, and Lucassen, Anneke
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- 2024
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204. Patterns of Comorbidities and Prescribing and Dispensing of Non-steroidal Anti-inflammatory Drugs (NSAIDs) Among Patients with Osteoarthritis in the USA: Real-World Study
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Ide, Joshua, Shoaibi, Azza, Wagner, Kerstin, Weinstein, Rachel, Boyle, Kathleen E., and Myers, Andrew
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- 2024
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205. The Ethical, Legal, and Social Implications of Genomics and Disability: Findings from a Scoping Review and Their Human Rights Implications
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Vassos, Maria, Faragher, Rhonda, Nankervis, Karen, Breedt, Radostina, Boyle, Fran, Smith, Simon, and Kelly, Jo
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- 2024
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206. Approaches for Treating Multiply Controlled Problem Behavior
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Boyle, Megan A., Hoffmann, Audrey N., Horn, Jon, Badger, Sean, and Gaskill, Lauren A.
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- 2024
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207. Demonstration of tunability of HOFI waveguides via start-to-end simulations
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Mewes, S. M., Boyle, G. J., Pousa, A. Ferran, Shalloo, R. J., Osterhoff, J., Arran, C., Corner, L., Walczak, R., Hooker, S. M., and Thévenet, M.
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Physics - Plasma Physics ,Physics - Accelerator Physics ,Physics - Fluid Dynamics ,Physics - Optics - Abstract
In recent years, hydrodynamic optical-field-ionized (HOFI) channels have emerged as a promising technique to create laser waveguides suitable for guiding tightly-focused laser pulses in a plasma, as needed for laser-plasma accelerators. While experimental advances in HOFI channels continue to be made, the underlying mechanisms and the roles of the main parameters remain largely unexplored. In this work, we propose a start-to-end simulation pipeline of the HOFI channel formation and the resulting guiding properties, and use it to explore the underlying physics and the tunability of HOFI channels. This approach is benchmarked against experimental measurements. HOFI channels are shown to feature excellent guiding properties over a wide range of parameters, making them a promising and tunable waveguide option for laser-plasma accelerators., Comment: 8 pages (+5 appendix), 7 figures, submitted to PRResearch
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- 2023
208. Complex Mathematical Symbol Definition Structures: A Dataset and Model for Coordination Resolution in Definition Extraction
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Martin-Boyle, Anna, Head, Andrew, Lo, Kyle, Sidhu, Risham, Hearst, Marti A., and Kang, Dongyeop
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Computer Science - Computation and Language ,I.2.7 - Abstract
Mathematical symbol definition extraction is important for improving scholarly reading interfaces and scholarly information extraction (IE). However, the task poses several challenges: math symbols are difficult to process as they are not composed of natural language morphemes; and scholarly papers often contain sentences that require resolving complex coordinate structures. We present SymDef, an English language dataset of 5,927 sentences from full-text scientific papers where each sentence is annotated with all mathematical symbols linked with their corresponding definitions. This dataset focuses specifically on complex coordination structures such as "respectively" constructions, which often contain overlapping definition spans. We also introduce a new definition extraction method that masks mathematical symbols, creates a copy of each sentence for each symbol, specifies a target symbol, and predicts its corresponding definition spans using slot filling. Our experiments show that our definition extraction model significantly outperforms RoBERTa and other strong IE baseline systems by 10.9 points with a macro F1 score of 84.82. With our dataset and model, we can detect complex definitions in scholarly documents to make scientific writing more readable., Comment: 9 pages, 4 figures
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- 2023
209. Must the Communication Graph of MPC Protocols be an Expander?
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Boyle, Elette, Cohen, Ran, Data, Deepesh, and Hubáček, Pavel
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Computer Science - Cryptography and Security - Abstract
Secure multiparty computation (MPC) on incomplete communication networks has been studied within two primary models: (1) Where a partial network is fixed a priori, and thus corruptions can occur dependent on its structure, and (2) Where edges in the communication graph are determined dynamically as part of the protocol. Whereas a rich literature has succeeded in mapping out the feasibility and limitations of graph structures supporting secure computation in the fixed-graph model (including strong classical lower bounds), these bounds do not apply in the latter dynamic-graph setting, which has recently seen exciting new results, but remains relatively unexplored. In this work, we initiate a similar foundational study of MPC within the dynamic-graph model. As a first step, we investigate the property of graph expansion. All existing protocols (implicitly or explicitly) yield communication graphs which are expanders, but it is not clear whether this is inherent. Our results consist of two types (for constant fraction of corruptions): * Upper bounds: We demonstrate secure protocols whose induced communication graphs are not expander graphs, within a wide range of settings (computational, information theoretic, with low locality, even with low locality and adaptive security), each assuming some form of input-independent setup. * Lower bounds: In the plain model (no setup) with adaptive corruptions, we demonstrate that for certain functionalities, no protocol can maintain a non-expanding communication graph against all adversarial strategies. Our lower bound relies only on protocol correctness (not privacy), and requires a surprisingly delicate argument. More generally, we provide a formal framework for analyzing the evolving communication graph of MPC protocols, giving a starting point for studying the relation between secure computation and further, more general graph properties.
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- 2023
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210. Flux Calibration of CHIME/FRB Intensity Data
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Andersen, Bridget C., Patel, Chitrang, Brar, Charanjot, Boyle, P. J., Fonseca, Emmanuel, Kaspi, Victoria M., Masui, Kiyoshi W., Mena-Parra, Juan, Merryfield, Marcus, Meyers, Bradley W., Sand, Ketan R., Scholz, Paul, Siegel, Seth R., and Singh, Saurabh
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Astrophysics - Instrumentation and Methods for Astrophysics ,Astrophysics - High Energy Astrophysical Phenomena - Abstract
Fast radio bursts (FRBs) are bright radio transients of micro-to-millisecond duration and unknown extragalactic origin. Central to the mystery of FRBs are their extremely high characteristic energies, which surpass the typical energies of other radio transients of similar duration, like Galactic pulsar and magnetar bursts, by orders of magnitude. Calibration of FRB-detecting telescopes for burst flux and fluence determination is crucial for FRB science, as these measurements enable studies of the FRB energy and brightness distribution in comparison to progenitor theories. The Canadian Hydrogen Intensity Mapping Experiment (CHIME) is a radio interferometer of cylindrical design. This design leads to a high FRB detection rate but also leads to challenges for CHIME/FRB flux calibration. This paper presents a comprehensive review of these challenges, as well as the automated flux calibration software pipeline that was developed to calibrate bursts detected in the first CHIME/FRB catalog, consisting of 536 events detected between July 25th, 2018 and July 1st, 2019. We emphasize that, due to limitations in the localization of CHIME/FRB bursts, flux and fluence measurements produced by this pipeline are best interpreted as lower limits, with uncertainties on the limiting value., Comment: 29 pages, 13 figures, submitted to AJ
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- 2023
211. Co-mapping Cellular Content and Extracellular Matrix with Hemodynamics in Intact Arterial Tissues Using Scanning Immunofluorescent Multiphoton Microscopy
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Tobe, Yasutaka, Robertson, Anne, Ramezanpour, Mehdi, Cebral, Juan, Watkins, Simon, Charbel, Fady, Amin-Hanjani, Sepideh, Yu, Alexander, Cheng, Boyle, and Woo, Henry
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Quantitative Biology - Quantitative Methods - Abstract
Deviation of blood flow from an optimal range is known to be associated with the initiation and progression of vascular pathologies. Important open questions remain about how the abnormal flow drives specific wall changes in pathologies such as cerebral aneurysms where the flow is highly heterogeneous and complex. This knowledge gap precludes the clinical use of readily available flow data to predict outcomes and improve treatment of these diseases. As both flow and the pathological wall changes are spatially heterogeneous, a crucial requirement for progress in this area is a methodology for co-mapping local data from vascular wall biology with local hemodynamic data. In this study, we developed an imaging pipeline to address this pressing need. A protocol that employs scanning multiphoton microscopy was designed to obtain 3D data sets for smooth muscle actin, collagen and elastin in intact vascular specimens. A cluster analysis was developed to objectively categorize the smooth muscle cells (SMC) across the vascular specimen based on SMC density. In the final step in this pipeline, the location specific categorization of SMC, along with wall thickness was co-mapped with patient specific hemodynamic results, enabling direct quantitative comparison of local flow and wall biology in 3D intact specimens., Comment: 36 pages, 5 figures
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- 2023
212. Coronal Heating as Determined by the Solar Flare Frequency Distribution Obtained by Aggregating Case Studies
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Mason, James Paul, Werth, Alexandra, West, Colin G., Youngblood, Allison A., Woodraska, Donald L., Peck, Courtney, Lacjak, Kevin, Frick, Florian G., Gabir, Moutamen, Alsinan, Reema A., Jacobsen, Thomas, Alrubaie, Mohammad, Chizmar, Kayla M., Lau, Benjamin P., Dominguez, Lizbeth Montoya, Price, David, Butler, Dylan R., Biron, Connor J., Feoktistov, Nikita, Dewey, Kai, Loomis, N. E., Bodzianowski, Michal, Kuybus, Connor, Dietrick, Henry, Wolfe, Aubrey M., Guerrero, Matt, Vinson, Jessica, Starbuck, Peter, Litton, Shelby D, Beck, M. G., Fisch, Jean-Paul, West, Ayana, Muniz, Alexis A., Chavez, Luis, Upthegrove, Zachary T., Runyon, Brenton M., Salazar, J., Kritzberg, Jake E., Murrel, Tyler, Ho, Ella, LaFemina, Quintin Y., Elbashir, Sara I., Chang, Ethan C., Hudson, Zachary A., Nussbaum, Rosemary O., Kennedy, Kellen, Kim, Kevin, Arango, Camila Villamil, Albakr, Mohammed A., Rotter, Michael, Garscadden, A. J., Salcido-Alcontar JR, Antonio, Pearl, Harrison M., Stepaniak, Tyler, Marquez, Josie A., Marsh, Lauren, Andringa, Jesse C, Osogwin, Austin, Shields, Amanda M., Brookins, Sarah, Hach, Grace K., Clausi, Alexis R., Millican, Emily B., Jaimes, Alan A, Graham, Alaina S., Burritt, John J., Perez, J. S., Ramirez, Nathaniel, Suri, Rohan, Myer, Michael S., Kresek, Zoe M., Goldsberry, C. A., Payne, Genevieve K., Jourabchi, Tara, Hu, J., Lucca, Jeffrey, Feng, Zitian, Gilpatrick, Connor B., Khan, Ibraheem A., Warble, Keenan, Sweeney, Joshua D., Dorricott, Philip, Meyer, Ethan, Kothamdi, Yash S., Sohail, Arman S., Grell, Kristyn, Floyd, Aidan, Bard, Titus, Mathieson, Randi M., Reed, Joseph, Cisneros, Alexis, Payne, Matthew P., Jarriel, J. R., Mora, Jacqueline Rodriguez, Sundell, M. E., Patel, Kajal, Alesmail, Mohammad, Alnasrallah, Yousef A, Abdullah, Jumana T., Molina-Saenz, Luis, Tayman, K. E., Brown, Gabriel T., Kerr-Layton, Liana, Berriman-Rozen, Zachary D., Hiatt, Quinn, Kalra, Etash, Ong, Jason, Vadayar, Shreenija, Shannahan, Callie D., Benke, Evan, zhang, Jinhua, Geisman, Jane, Martyr, Cara, Ameijenda, Federico, Akruwala, Ushmi H., Nehring, Molly, Kissner, Natalie, Rule, Ian C., Learned, Tyler, Smith, Alexandra N., Mazzotta, Liam, Rounsefell, Tyndall, Eyeson, Elizabeth A., Shelby, Arlee K., Moll, Tyler S, Menke, Riley, Shahba, Hannan, House Jr., Tony A., Clark, David B., Burns, Annemarie C., de La Beaujardiere, Tristan, Trautwein, Emily D., Plantz, Will, Reeves, Justin, Faber, Ian, Buxton, B. W., Highhouse, Nigel, Landrey, Kalin, Hansen, Connor M, Chen, Kevin, Hales, Ryder Buchanan, Borgerding, Luke R., Guo, Mutian, Crow, Christian J., Whittall, Lloyd C., Simmons, Conor, Folarin, Adeduni, Parkinson, Evan J., Rahn, Anna L., Blevins, Olivia, Morelock, Annalise M., Kelly, Nicholas, Parker, Nathan L., Smith, Kelly, Plzak, Audrey E., Saeb, David, Hares, Cameron T., Parker, Sasha R., McCoy, Andrew, Pham, Alexander V., Lauzon, Megan, Kennedy, Cayla J., Reyna, Andrea B., Acosta, Daniela M. Meza, Cool, Destiny J., Steinbarth, Sheen L., Mendoza-Anselmi, Patricia, Plutt, Kaitlyn E., Kipp, Isabel M, Rakhmonova, M., Brown, Cameron L., Van Anne, Gabreece, Moss, Alexander P., Golden, Olivia, Kirkpatrick, Hunter B., Colleran, Jake R., Sullivan, Brandon J, Tran, Kevin, Carpender, Michael Andrew, Mundy, Aria T., Koenig, Greta, Oudakker, Jessica, Engelhardt, Rasce, Ales, Nolan, Wexler, Ethan Benjamin, Beato, Quinn I, Chen, Lily, Cochran, Brooke, Hill, Paula, Hamilton, Sean R., Hashiro, Kyle, Khan, Usman, Martinez, Alexa M., Brockman, Jennifer L., Mallory, Macguire, Reed, Charlie, Terrile, Richard, Singh, Savi, Watson, James Adam, Creany, Joshua B., Price, Nicholas K., Miften, Aya M., Tran, Bryn, Kamenetskiy, Margaret, Martinez, Jose R., Opp, Elena N., Huang, Jianyang, Fails, Avery M., Belei, Brennan J., Slocum, Ryan, Astalos, Justin, East, Andrew, Nguyen, Lena P., Pherigo, Callie C, East, Andrew N., Li, David Y., Nelson, Maya LI, Taylor, Nicole, Odbayar, Anand, Rives, Anna Linnea, Mathur, Kabir P., Billingsley, Jacob, Polikoff, Hyden, Driscoll, Michael, Wilson, Orion K., Lahmers, Kyle, Toon, Nathaniel J., Lippincott, Sam, Musgrave, Andrew J., Gregory, Alannah H., Pitsuean-Meier, Sedique, Jesse, Trevor, Smith, Corey, Miles, Ethan J., Kainz, Sabrina J. H. T., Ji, Soo Yeun, Nguyen, Lena, Aryan, Maryam, Dinser, Alexis M., Shortman, Jadon, Bastias, Catalina S, Umbricht, Thomas D, Cage, Breonna, Randolph, Parker, Pollard, Matthew, Simone, Dylan M., Aramians, Andrew, Brecl, Ariana E., Robert, Amanda M., Zenner, Thomas, Saldi, Maxwell, Morales, Gavin, Mendez, Citlali, Syed, Konner, Vogel, Connor Maklain, Cone, Rebecca A., Berhanu, Naomi, Carpenter, Emily, Leoni, Cecilia, Bryan, Samuel, Ramachandra, Nidhi, Shaw, Timothy, Lee, E. C., Monyek, Eli, Wegner, Aidan B., Sharma, Shajesh, Lister, Barrett, White, Jamison R., Willard, John S., Sulaiman, S. A, Blandon, Guillermo, Narayan, Anoothi, Ruger, Ryan, Kelley, Morgan A., Moreno, Angel J., Balcer, Leo M, Ward-Chene, N. R. D., Shelby, Emma, Reagan, Brian D., Marsh, Toni, Sarkar, Sucheta, Kelley, Michael P., Fell, Kevin, Balaji, Sahana, Hildebrand, Annalise K., Shoha, Dominick, Nandu, Kshmya, Tucker, Julia, Cancio, Alejandro R., Wang, Jiawei, Rapaport, Sarah Grace, Maravi, Aimee S., Mayer, Victoria A., Miller, Andrew, Bence, Caden, Koke, Emily, Fauntleroy, John T, Doermer, Timothy, Al-Ghazwi, Adel, Morgan, Remy, Alahmed, Mohammed S., Mathavan, Adam Izz Khan Mohd Reduan, Silvester, H. K., Weiner, Amanda M., Liu, Nianzi, Iovan, Taro, Jensen, Alexander V., AlHarbi, Yazeed A., Jiang, Yufan, Zhang, Jiaqi, Jones, Olivia M., Huang, Chenqi, Reh, Eileen N., Alhamli, Dania, Pettine, Joshua, Zhou, Chongrui, Kriegman, Dylan, Yang, Jianing, Ash, Kevin, Savage, Carl, Kaiser, Emily, Augenstein, Dakota N., Padilla, Jacqueline, Stark, Ethan K., Hansen, Joshua A., Kokes, Thomas, Huynh, Leslie, Sanchez-Sanchez, Gustavo, Jeseritz, Luke A., Carillion, Emma L., Vepa, Aditya V., Khanal, Sapriya, Behr, Braden, Martin, Logan S., McMullan, Jesse J., Zhao, Tianwei, Williams, Abigail K., Alqabani, Emeen, Prinster, Gale H., Horne, Linda, Ruggles-Delgado, Kendall, Otto, Grant, Gomez, Angel R., Nguyen, Leonardo, Brumley, Preston J., Venegas, Nancy Ortiz, Varela, Ilian, Brownlow, Jordi, Cruz, Avril, Leiker, Linzhi, Batra, Jasleen, Hutabarat, Abigail P., Nunes-Valdes, Dario, Jameson, Connor, Naqi, Abdulaziz, Adams, Dante Q., Biediger, Blaine B., Borelli, William T, Cisne, Nicholas A., Collins, Nathaniel A., Curnow, Tyler L., Gopalakrishnan, Sean, Griffin, Nicholas F., Herrera, Emanuel, McGarvey, Meaghan V., Mellett, Sarah, Overchuk, Igor, Shaver, Nathan, Stratmeyer, Cooper N., Vess, Marcus T., Juels, Parker, Alyami, Saleh A., Gale, Skylar, Wallace, Steven P., Hunter, Samuel C, Lonergan, Mia C., Stewart, Trey, Maksimuk, Tiffany E., Lam, Antonia, Tressler, Judah, Napoletano, Elena R., Miller, Joshua B., Roy, Marc G., Chanders, Jasey, Fischer, Emmalee, Croteau, A. J., Kuiper, Nicolas A., Hoffman, Alex, DeBarros, Elyse, Curry, Riley T., Brzostowicz, A., Courtney, Jonas, Zhao, Tiannie, Szabo, Emi, Ghaith, Bandar Abu, Slyne, Colin, Beck, Lily, Quinonez, Oliver, Collins, Sarah, Madonna, Claire A., Morency, Cora, Palizzi, Mallory, Herwig, Tim, Beauprez, Jacob N., Ghiassi, Dorsa, Doran, Caroline R., Yang, Zhanchao, Padgette, Hannah M., Dicken, Cyrus A., Austin, Bryce W., Phalen, Ethan J., Xiao, Catherine, Palos, Adler, Gerhardstein, Phillip, Altenbern, Ava L., Orbidan, Dan, Dorr, Jackson A., Rivas, Guillermo A., Ewing, Calvin A, Giebner, B. C., McEntee, Kelleen, Kite, Emily R., Crocker, K. A., Haley, Mark S., Lezak, Adrienne R., McQuaid, Ella, Jeong, Jacob, Albaum, Jonathan, Hrudka, E. M., Mulcahy, Owen T., Tanguma, Nolan C., Oishi-Holder, Sean, White, Zachary, Coe, Ryan W., Boyer, Christine, Chapman, Mitchell G., Fortino, Elise, Salgado, Jose A., Hellweg, Tim, Martinez, Hazelia K., Mitchell, Alexander J., Schubert, Stephanie H., Schumacher, Grace K, Tesdahl, Corey D, Uphoff, C. H., Vassilyev, Alexandr, Witkoff, Briahn, Wolle, Jackson R., Dice, Kenzie A., Behrer, Timothy A., Bowen, Troy, Campbell, Andrew J, Clarkson, Peter C, Duong, Tien Q., Hawat, Elijah, Lopez, Christian, Olson, Nathaniel P., Osborn, Matthew, Peou, Munisettha E., Vaver, Nicholas J., Husted, Troy, Kallemeyn, Nicolas Ian, Spangler, Ava A, Mccurry, Kyle, Schultze, Courtney, Troisi, Thomas, Thomas, Daniel, Ort, Althea E., Singh, Maya A., Soon, Caitlin, Patton, Catherine, Billman, Jayce A., Jarvis, Sam, Hitt, Travis, Masri, Mirna, Albalushi, Yusef J., Schofer, Matthew J, Linnane, Katherine B., Knott, Philip Whiting, Valencia, Whitney, Arias-Robles, Brian A., Ryder, Diana, Simone, Anna, Abrams, Jonathan M., Belknap, Annelene L., Rouse, Charlotte, Reynolds, Alexander, Petric, Romeo S. L., Gomez, Angel A., Meiselman-Ashen, Jonah B., Carey, Luke, Dias, John S., Fischer-White, Jules, Forbes, Aidan E., Galarraga, Gabriela, Kennedy, Forrest, Lawlor, Rian, Murphy, Maxwell J., Norris, Cooper, Quarderer, Josh, Waller, Caroline, Weber, Robert J., Gunderson, Nicole, Boyne, Tom, Gregory, Joshua A., Propper, Henry Austin, von Peccoz, Charles B. Beck, Branch, Donovan, Clarke, Evelyn, Cutler, Libby, Dabberdt, Frederick M., Das, Swagatam, Figueirinhas, John Alfred D., Fougere, Benjamin L., Roy, Zoe A., Zhao, Noah Y., Cox, Corben L., Barnhart, Logan D. W., Craig, Wilmsen B., Moll, Hayden, Pohle, Kyle, Mueller, Alexander, Smith, Elena K., Spicer, Benjamin C., Aycock, Matthew C., Bat-Ulzii, Batchimeg, Murphy, Madalyn C., Altokhais, Abdullah, Thornally, Noah R., Kleinhaus, Olivia R., Sarfaraz, Darian, Barnes, Grant M., Beard, Sara, Banda, David J, Davis, Emma A. B., Huebsch, Tyler J., Wagoner, Michaela, Griego, Justus, Hale, Jack J. Mc, Porter, Trevor J., Abrashoff, Riley, Phan, Denise M., Smith, Samantha M., Srivastava, Ashish, Schlenker, Jared A. W., Madsen, Kasey O., Hirschmann, Anna E., Rankin, Frederick C, Akbar, Zainab A., Blouin, Ethan, Coleman-Plante, Aislinn, Hintsa, Evan, Lookhoff, Emily, Amer, Hamzi, Deng, Tianyue, Dvorak, Peter, Minimo, Josh, Plummer, William C., Ton, Kelly, Solt, Lincoln, AlAbbas, Batool H., AlAwadhi, Areej A., Cooper, Nicholas M., Corbitt, Jessica S, Dunlap, Christian, Johnson, Owen, Malone, Ryan A., Tellez, Yesica, Wallace, Logan, Ta, Michael-Tan D., Wheeler, Nicola H., Ramirez, Ariana C., Huang, Shancheng, Mehidic, Amar, Christiansen, Katherine E, Desai, Om, Domke, Emerson N., Howell, Noah H., Allsbrook, Martin, Alnaji, Teeb, England, Colin, Siles, Nathan, Burton, Nicholas David, Cruse, Zoe, Gilmartin, Dalton, Kim, Brian T., Hattendorf, Elsie, Buhamad, Maryam, Gayou, Lily, Seglem, Kasper, Alkhezzi, Tameem, Hicks, Imari R., Fife, Ryann, Pelster, Lily M., Fix, Alexander, Sur, Sohan N., Truong, Joshua K., Kubiak, Bartlomiej, Bondar, Matthew, Shi, Kyle Z., Johnston, Julia, Acevedo, Andres B., Lee, Junwon, Solorio, William J., Johnston, Braedon Y., McCormick, Tyler, Olguin, Nicholas, Pastor, Paige J., Wilson, Evan M., Trunko, Benjamin L., Sjoroos, Chris, Adams, Kalvyn N, Bell, Aislyn, Brumage-Heller, Grant, Canales, Braden P., Chiles, Bradyn, Driscoll, Kailer H., Hill, Hallie, Isert, Samuel A., Ketterer, Marilyn, Kim, Matthew M., Mewhirter, William J., Phillips, Lance, Phommatha, Krista, Quinn, Megan S., Reddy, Brooklyn J., Rippel, Matthew, Russell, Bowman, Williams, Sajan, Pixley, Andrew M., Gapin, Keala C., Peterson, B., Ruprecht, Collin, Hardie, Isabelle, Li, Isaac, Erickson, Abbey, Gersabeck, Clint, Gopalani, Mariam, Allanqawi, Nasser, Burton, Taylor, Cahn, Jackson R., Conti, Reese, White, Oliver S., Rojec, Stewart, Hogen, Blake A., Swartz, Jason R., Dick, R., Battist, Lexi, Dunn, Gabrielle M., Gasser, Rachel, Logan, Timothy W., Sinkovic, Madeline, Schaller, Marcus T., Heintz, Danielle A., Enrich, Andrew, Sanchez, Ethan S., Perez, Freddy, Flores, Fernando, Kapla, Shaun D., Shockley, Michael C., Phillips, Justin, Rumley, Madigan, Daboub, Johnston, Karsh, Brennan J., Linders, Bridget, Chen, Sam, Do, Helen C., Avula, Abhinav, French, James M., Bertuccio, Chrisanna, Hand, Tyler, Lee, Adrianna J., Neeland, Brenna K, Salazar, Violeta, Andrew, Carter, Barmore, Abby, Beatty, Thomas, Alonzi, Nicholas, Brown, Ryan, Chandler, Olivia M., Collier, Curran, Current, Hayden, Delasantos, Megan E., Bonilla, Alberto Espinosa de los Monteros, Fowler, Alexandra A., Geneser, Julianne R., Gentry, Eleanor, Gustavsson, E. R., Hansson, Jonathan, Hao, Tony Yunfei, Herrington, Robert N., Kelly, James, Kelly, Teagan, Kennedy, Abigail, Marquez, Mathew J., Meillon, Stella, Palmgren, Madeleine L., Pesce, Anneliese, Ranjan, Anurag, Robertson, Samuel M., Smith, Percy, Smith, Trevor J, Soby, Daniel A., Stratton, Grant L., Thielmann, Quinn N., Toups, Malena C., Veta, Jenna S., Young, Trenton J., Maly, Blake, Manzanares, Xander R., Beijer, Joshua, George, Jacob D., Mills, Dylan P., Ziebold, Josh J, Chambers, Paige, Montoya, Michael, Cheang, Nathan M., Anderson, Hunter J., Duncan, Sheridan J., Ehrlich, Lauren, Hudson, Nathan C., Kiechlin, Jack L., Koch, Will, Lee, Justin, Menassa, Dominic, Oakes, S. H., Petersen, Audrey J., Bunsow, J. R. Ramirez, Bay, Joshua, Ramirez, Sacha, Fenwick, Logan D., Boyle, Aidan P., Hibbard, Lea Pearl, Haubrich, Calder, Sherry, Daniel P., Jenkins, Josh, Furney, Sebastian, Velamala, Anjali A., Krueger, Davis J., Thompson, William N., Chhetri, Jenisha, Lee, Alexis Ying-Shan, Ray, Mia G. V., Recchia, John C., Lengerich, Dylan, Taulman, Kyle, Romero, Andres C., Steward, Ellie N., Russell, Sloan, Hardwick, Dillon F., Wootten, Katelynn, Nguyen, Valerie A., Quispe, Devon, Ragsdale, Cameron, Young, Isabel, Atchley-Rivers, N. S., Stribling, Jordin L., Gentile, Julia G, Boeyink, Taylor A., Kwiatkowski, Daniel, Dupeyron, Tomi Oshima, Crews, Anastasia, Shuttleworth, Mitchell, Dresdner, Danielle C., Flackett, Lydia, Haratsaris, Nicholas, Linger, Morgan I, Misener, Jay H., Patti, Samuel, Pine, Tawanchai P., Marikar, Nasreen, Matessi, Giorgio, Routledge, Allie C., Alkaabi, Suhail, Bartman, Jessica L., Bisacca, Gabrielle E., Busch, Celeste, Edwards, Bree, Staudenmier, Caitlyn, Starling, Travis, McVey, Caden, Montano, Maximus, Contizano, Charles J., Taylor, Eleanor, McIntyre, James K., Victory, Andrew, McCammon, Glen S., Kimlicko, Aspen, Sheldrake, Tucker, Shelchuk, Grace, Von Reich, Ferin J., Hicks, Andrew J., O'neill, Ian, Rossman, Beth, Taylor, Liam C., MacDonald, William, Becker, Simone E., Han, Soonhee, O'Sullivan, Cian, Wilcove, Isaac, Brennan, David J., Hanley, Luke C., Hull, Owen, Wilson, Timothy R., Kalmus, Madison H., Berv, Owen A., Harris, Logan Swous, Doan, Chris H, Londres, Nathan, Parulekar, Anish, Adam, Megan M., Angwin, Abigail, Cabbage, Carter C., Colleran, Zachary, Pietras, Alex, Seux, Octave, Oros, Ryan, Wilkinson, Blake C., Nguyen, Khoa D, Trank-Greene, Maedee, Barone, Kevin M., Snyder, G. L., Biehle, Samuel J, Billig, Brennen, Almquist, Justin Thomas, Dixon, Alyssa M., Erickson, Benjamin, Evans, Nathan, Genne, SL, Kelly, Christopher M, Marcus, Serafima M., Ogle, Caleb, Patel, Akhil, Vendetti, Evan, Courtney, Olivia, Deel, Sean, Del Foco, Leonardo, Gjini, Michael, Haines, Jessica, Hoff, Isabelle J., Jones, M. R., Killian, Dominic, Kuehl, Kirsten, Kuester, Chrisanne, Lantz, Maxwell B., Lee, Christian J, Mauer, Graham, McKemey, Finbar K., Millican, Sarah J., Rosasco, Ryan, Stewart, T. C., VanEtten, Eleanor, Derwin, Zachary, Serio, Lauren, Sickler, Molly G., Blake, Cassidy A., Patel, Neil S., Fox, Margaret, Gray, Michael J, Ziegler, Lucas J., Kumar, Aman Priyadarshi, Polly, Madelyn, Mesgina, Sarah, McMorris, Zane, Griffin, Kyle J., Haile, L. N., Bassel, Claire, Dixon, Thomas J., Beattie, Ryan, Houck, Timothy J, Rodgers, Maeve, Trofino, Tyson R., Lukianow, Dax, Smart, Korben, Hall, Jacqueline L., Bone, Lauren, Baldwin, James O., Doane, Connor, Almohsen, Yousef A., Stamos, Emily, Acha, Iker, Kim, Jake, Samour II, Antonio E., Chavali, S., Kanokthippayakun, Jeerakit, Gotlib, Nicholas, Murphy, Ryan C., Archibald, Jack. W., Brimhall, Alexander J, Boyer, Aidan, Chapman, Logan T., Chadda, Shivank, Sibrell, Lisa, Vallery, Mia M., Conroy, Thomas C., Pan, Luke J., Balajonda, Brian, Fuhrman, Bethany E. S., Alkubaisi, Mohamed, Engelstad, Jacob, Dodrill, Joshua, Fuchs, Calvin R., Bullard-Connor, Gigi, Alhuseini, Isehaq, Zygmunt, James C., Sipowicz, Leo, Hayrynen, Griffin A., McGill, Riley M., Keating, Caden J., Hart, Omer, Cyr, Aidan St., Steinsberger, Christopher H., Thoman, Gerig, Wood, Travis M., Ingram, Julia A., Dominguez, J., Georgiades, Nathaniel James, Johnson, Matthew, Johnson, Sawyer, Pedersen, Alexander J., Ralapanawe, Anoush K, Thomas, Jeffrey J., Sato, Ginn A., Reynolds, Hope, Nasser, Liebe, Mizzi, Alexander Z., Damgaard, Olivia, Baflah, Abdulrahman A., Liu, Steven Y., Salindeho, Adam D., Norden, Kelso, Gearhart, Emily E., Krajnak, Zack, Szeremeta, Philip, Amos, Meggan, Shin, Kyungeun, Muckenthaler, Brandon A., Medialdea, Melissa, Beach, Simone, Wilson, Connor B., Adams, Elena R, Aldhamen, Ahmed, Harris, Coyle M., Hesse, Troy M., Golding, Nathan T., Larter, Zachary, Hernandez, Angel, Morales, Genaro, Traxler, Robert B., Alosaimi, Meshal, Fitton, Aidan F., Aaron, James Holland, Lee, Nathaniel F., Liao, Ryan Z., Chen, Judy, French, Katherine V., Loring, Justin, Colter, Aurora, McConvey, Rowan, Colozzi, Michael, Vann, John D., Scheck, Benjamin T., Weigand, Anthony A, Alhabeeb, Abdulelah, Idoine, Yolande, Woodard, Aiden L., Medellin, Mateo M., Ratajczyk, Nicholas O, Tobin, Darien P., Collins, Jack C., Horning, Thomas M., Pellatz, Nick, Pitten, John, Lordi, Noah, Patterson, Alyx, Hoang, Thi D, Zimmermann, Ingrid H, Wang, Hongda, Steckhahn, Daniel, Aradhya, Arvind J., Oliver, Kristin A., Cai, Yijian, Wang, Chaoran, Yegovtsev, Nikolay, Wu, Mengyu, Ganesan, Koushik, Osborne, Andrew, Wickenden, Evan, Meyer, Josephine C., Chaparro, David, Visal, Aseem, Liu, Haixin, Menon, Thanmay S., Jin, Yan, Wilson, John, Erikson, James W., Luo, Zheng, Shitara, Nanako, Nelson, Emma E, Geerdts, T. R., Ortiz, Jorge L Ramirez, and Lewandowski, H. J.
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Astrophysics - Solar and Stellar Astrophysics - Abstract
Flare frequency distributions represent a key approach to addressing one of the largest problems in solar and stellar physics: determining the mechanism that counter-intuitively heats coronae to temperatures that are orders of magnitude hotter than the corresponding photospheres. It is widely accepted that the magnetic field is responsible for the heating, but there are two competing mechanisms that could explain it: nanoflares or Alfv\'en waves. To date, neither can be directly observed. Nanoflares are, by definition, extremely small, but their aggregate energy release could represent a substantial heating mechanism, presuming they are sufficiently abundant. One way to test this presumption is via the flare frequency distribution, which describes how often flares of various energies occur. If the slope of the power law fitting the flare frequency distribution is above a critical threshold, $\alpha=2$ as established in prior literature, then there should be a sufficient abundance of nanoflares to explain coronal heating. We performed $>$600 case studies of solar flares, made possible by an unprecedented number of data analysts via three semesters of an undergraduate physics laboratory course. This allowed us to include two crucial, but nontrivial, analysis methods: pre-flare baseline subtraction and computation of the flare energy, which requires determining flare start and stop times. We aggregated the results of these analyses into a statistical study to determine that $\alpha = 1.63 \pm 0.03$. This is below the critical threshold, suggesting that Alfv\'en waves are an important driver of coronal heating., Comment: 1,002 authors, 14 pages, 4 figures, 3 tables, published by The Astrophysical Journal on 2023-05-09, volume 948, page 71
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- 2023
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213. Spatiotemporal Transformer for Stock Movement Prediction
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Boyle, Daniel and Kalita, Jugal
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Computer Science - Machine Learning ,Computer Science - Artificial Intelligence ,Computer Science - Computational Engineering, Finance, and Science - Abstract
Financial markets are an intriguing place that offer investors the potential to gain large profits if timed correctly. Unfortunately, the dynamic, non-linear nature of financial markets makes it extremely hard to predict future price movements. Within the US stock exchange, there are a countless number of factors that play a role in the price of a company's stock, including but not limited to financial statements, social and news sentiment, overall market sentiment, political happenings and trading psychology. Correlating these factors is virtually impossible for a human. Therefore, we propose STST, a novel approach using a Spatiotemporal Transformer-LSTM model for stock movement prediction. Our model obtains accuracies of 63.707 and 56.879 percent against the ACL18 and KDD17 datasets, respectively. In addition, our model was used in simulation to determine its real-life applicability. It obtained a minimum of 10.41% higher profit than the S&P500 stock index, with a minimum annualized return of 31.24%.
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- 2023
214. Efficient and Scalable Path-Planning Algorithms for Curvature Constrained Motion in the Hamilton-Jacobi Formulation
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Parkinson, Christian and Boyle, Isabelle
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Mathematics - Numerical Analysis ,49L20, 49N90, 93C95 - Abstract
We present a partial-differential-equation-based optimal path-planning framework for curvature constrained motion, with application to vehicles in 2- and 3-spatial-dimensions. This formulation relies on optimal control theory, dynamic programming, and Hamilton-Jacobi-Bellman equations. We develop efficient and scalable algorithms for solutions of high dimensional Hamilton-Jacobi equations which can solve these types of path-planning problems efficiently, even in high dimensions, while maintaining the Hamilton-Jacobi formulation. Because our method is rooted in optimal control theory and has no black box components, it has solid interpretability, and thus averts the tradeoff between interpretability and efficiency for high-dimensional path-planning problems. We demonstrate our method with several examples., Comment: 32 pages, 7 figures
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- 2023
215. FollowMe: Vehicle Behaviour Prediction in Autonomous Vehicle Settings
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Mohamed, Abduallah, Liu, Jundi, Boyle, Linda Ng, and Claudel, Christian
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Computer Science - Robotics ,Computer Science - Computer Vision and Pattern Recognition - Abstract
An ego vehicle following a virtual lead vehicle planned route is an essential component when autonomous and non-autonomous vehicles interact. Yet, there is a question about the driver's ability to follow the planned lead vehicle route. Thus, predicting the trajectory of the ego vehicle route given a lead vehicle route is of interest. We introduce a new dataset, the FollowMe dataset, which offers a motion and behavior prediction problem by answering the latter question of the driver's ability to follow a lead vehicle. We also introduce a deep spatio-temporal graph model FollowMe-STGCNN as a baseline for the dataset. In our experiments and analysis, we show the design benefits of FollowMe-STGCNN in capturing the interactions that lie within the dataset. We contrast the performance of FollowMe-STGCNN with prior motion prediction models showing the need to have a different design mechanism to address the lead vehicle following settings.
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- 2023
216. Three long period transiting giant planets from TESS
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Brahm, Rafael, Ulmer-Moll, Solène, Hobson, Melissa J., Jordán, Andrés, Henning, Thomas, Trifonov, Trifon, Jones, Matías I., Schlecker, Martin, Espinoza, Nestor, Rojas, Felipe I., Torres, Pascal, Sarkis, Paula, Tala, Marcelo, Eberhardt, Jan, Kossakowski, Diana, Muñoz, Diego J., Hartman, Joel D., Boyle, Gavin, Suc, Vincent, Bouchy, François, Deline, Adrien, Chaverot, Guillaume, Grieves, Nolan, Lendl, Monika, Suarez, Olga, Triaud, Amaury H. M. J., Crouzet, Nicolas, Dransfield, Georgina, Guillot, Tristan, Cloutier, Ryan, Barkaoui, Khalid, Schwarz, Rick P., Stockdale, Chris, Harris, Mallory, Mireles, Ismael, Evans, Phil, Mann, Andrew W., Ziegler, Carl, Dragomir, Diana, Villanueva, Steven, Mordasini, Christoph, Ricker, George, Vanderspek, Roland, Latham, David W., Seager, Sara, Winn, Joshua N., Jenkins, Jon M., Vezie, Michael, Youngblood, Allison, Daylan, Tansu, Collins, Karen A., Caldwell, Douglas A., Ciardi, David R., Palle, Enric, and Murgas, Felipe
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Astrophysics - Earth and Planetary Astrophysics ,Astrophysics - Solar and Stellar Astrophysics - Abstract
We report the discovery and orbital characterization of three new transiting warm giant planets. These systems were initially identified as presenting single transit events in the light curves generated from the full frame images of the Transiting Exoplanet Survey Satellite (TESS). Follow-up radial velocity measurements and additional light curves were used to determine the orbital periods and confirm the planetary nature of the candidates. The planets orbit slightly metal-rich late F- and early G-type stars. We find that TOI 4406b has a mass of $M_P$= 0.30 $\pm$ 0.04 $M_J$ , a radius of $R_P$= 1.00 $\pm$ 0.02 $R_J$ , and a low eccentricity orbit (e=0.15 $\pm$ 0.05) with a period of P= 30.08364 $\pm$ 0.00005 d . TOI 2338b has a mass of $M_P$= 5.98 $\pm$ 0.20 $M_J$ , a radius of $R_P$= 1.00 $\pm$ 0.01 $R_J$ , and a highly eccentric orbit (e= 0.676 $\pm$ 0.002 ) with a period of P= 22.65398 $\pm$ 0.00002 d . Finally, TOI 2589b has a mass of $M_P$= 3.50 $\pm$ 0.10 $M_J$ , a radius of $R_P$= 1.08 $\pm$ 0.03 $R_J$ , and an eccentric orbit (e = 0.522 $\pm$ 0.006 ) with a period of P= 61.6277 $\pm$ 0.0002 d . TOI 4406b and TOI 2338b are enriched in metals compared to their host stars, while the structure of TOI 2589b is consistent with having similar metal enrichment to its host star., Comment: 24 pages, 16 figures, accepted in AJ
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- 2023
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217. Laying the foundation of the effective-one-body waveform models SEOBNRv5: improved accuracy and efficiency for spinning non-precessing binary black holes
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Pompili, Lorenzo, Buonanno, Alessandra, Estellés, Héctor, Khalil, Mohammed, van de Meent, Maarten, Mihaylov, Deyan P., Ossokine, Serguei, Pürrer, Michael, Ramos-Buades, Antoni, Mehta, Ajit Kumar, Cotesta, Roberto, Marsat, Sylvain, Boyle, Michael, Kidder, Lawrence E., Pfeiffer, Harald P., Scheel, Mark A., Rüter, Hannes R., Vu, Nils, Dudi, Reetika, Ma, Sizheng, Mitman, Keefe, Melchor, Denyz, Thomas, Sierra, and Sanchez, Jennifer
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General Relativity and Quantum Cosmology - Abstract
We present SEOBNRv5HM, a more accurate and faster inspiral-merger-ringdown gravitational waveform model for quasi-circular, spinning, nonprecessing binary black holes within the effective-one-body (EOB) formalism. Compared to its predecessor, SEOBNRv4HM, the waveform model i) incorporates recent high-order post- Newtonian results in the inspiral, with improved resummations, ii) includes the gravitational modes (l, |m|) = (3, 2), (4, 3), in addition to the (2, 2), (3, 3), (2, 1), (4, 4), (5, 5) modes already implemented in SEOBNRv4HM, iii) is calibrated to larger mass-ratios and spins using a catalog of 442 numerical-relativity (NR) simulations and 13 additional waveforms from black-hole perturbation theory, iv) incorporates information from second-order gravitational self-force (2GSF) in the nonspinning modes and radiation-reaction force. Computing the unfaithfulness against NR simulations, we find that for the dominant (2, 2) mode the maximum unfaithfulness in the total mass range $10-300 M_{\odot}$ is below $10^{-3}$ for 90% of the cases (38% for SEOBNRv4HM). When including all modes up to l = 5 we find 98% (49%) of the cases with unfaithfulness below $10^{-2} (10^{-3})$, while these numbers reduce to 88% (5%) when using SEOBNRv4HM. Furthermore, the model shows improved agreement with NR in other dynamical quantities (e.g., the angular momentum flux and binding energy), providing a powerful check of its physical robustness. We implemented the waveform model in a high-performance Python package (pySEOBNR), which leads to evaluation times faster than SEOBNRv4HM by a factor 10 to 50, depending on the configuration, and provides the flexibility to easily include spin-precession and eccentric effects, thus making it the starting point for a new generation of EOBNR waveform models (SEOBNRv5) to be employed for upcoming observing runs of the LIGO-Virgo-KAGRA detectors.
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- 2023
218. Classification of chiral fermionic CFTs of central charge $\le 16$
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Smith, Philip Boyle, Lin, Ying-Hsuan, Tachikawa, Yuji, and Zheng, Yunqin
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High Energy Physics - Theory - Abstract
We classify two-dimensional purely chiral conformal field theories which are defined on two-dimensional surfaces equipped with spin structure and have central charge less than or equal to 16, and discuss their duality webs. This result can be used to confirm that the list of non-supersymmetric ten-dimensional heterotic string theories found in the late 1980s is complete and does not miss any exotic example., Comment: 29+13 pages; v2: published version, with many improvements in presentation thanks to comments by the referees
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- 2023
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219. Multi-Agent Reinforcement Learning with Action Masking for UAV-enabled Mobile Communications
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Rizvi, Danish and Boyle, David
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Computer Science - Multiagent Systems ,Computer Science - Artificial Intelligence ,Computer Science - Machine Learning - Abstract
Unmanned Aerial Vehicles (UAVs) are increasingly used as aerial base stations to provide ad hoc communications infrastructure. Building upon prior research efforts which consider either static nodes, 2D trajectories or single UAV systems, this paper focuses on the use of multiple UAVs for providing wireless communication to mobile users in the absence of terrestrial communications infrastructure. In particular, we jointly optimize UAV 3D trajectory and NOMA power allocation to maximize system throughput. Firstly, a weighted K-means-based clustering algorithm establishes UAV-user associations at regular intervals. The efficacy of training a novel Shared Deep Q-Network (SDQN) with action masking is then explored. Unlike training each UAV separately using DQN, the SDQN reduces training time by using the experiences of multiple UAVs instead of a single agent. We also show that SDQN can be used to train a multi-agent system with differing action spaces. Simulation results confirm that: 1) training a shared DQN outperforms a conventional DQN in terms of maximum system throughput (+20%) and training time (-10%); 2) it can converge for agents with different action spaces, yielding a 9% increase in throughput compared to mutual learning algorithms; and 3) combining NOMA with an SDQN architecture enables the network to achieve a better sum rate compared with existing baseline schemes.
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- 2023
220. Discovery of a massive giant planet with extreme density around a sub-giant star TOI-4603
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Khandelwal, Akanksha, Sharma, Rishikesh, Chakraborty, Abhijit, Chaturvedi, Priyanka, Ulmer-Moll, Solène, Ciardi, David R., Boyle, Andrew W., Baliwal, Sanjay, Bieryla, Allyson, Latham, David W., Prasad, Neelam J. S. S. V., Nayak, Ashirbad, Lendl, Monika, and Mordasini, Christoph
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Astrophysics - Earth and Planetary Astrophysics ,Astrophysics - Solar and Stellar Astrophysics - Abstract
We present the discovery of a transiting massive giant planet around TOI-4603, a sub-giant F-type star from NASA's Transiting Exoplanet Survey Satellite (TESS). The newly discovered planet has a radius of $1.042^{+0.038}_{-0.035}$ $R_{J}$, and an orbital period of $7.24599^{+0.00022}_{-0.00021}$ days. Using radial velocity measurements with the PARAS {and TRES} spectrographs, we determined the planet's mass to be $12.89^{+0.58}_{-0.57}$ $M_{J}$, resulting in a bulk density of $14.1^{+1.7}_{-1.6}$ g ${cm^{-3}}$. This makes it one of the few massive giant planets with extreme density and lies in the transition mass region of massive giant planets and low-mass brown dwarfs, an important addition to the population of less than five objects in this mass range. The eccentricity of $0.325\pm0.020$ and an orbital separation of $0.0888\pm0.0010$ AU from its host star suggest that the planet is likely undergoing high eccentricity tidal (HET) migration. We find a fraction of heavy elements of $0.13^{+0.05}_{-0.06}$ and metal enrichment of the planet ($Z_{P}/Z_{star}$) of $4.2^{+1.6}_{-2.0}$. Detection of such systems will offer us to gain valuable insights into the governing mechanisms of massive planets and improve our understanding of their dominant formation and migration mechanisms., Comment: accepted for publication in A&A Letters
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- 2023
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221. A super-Earth and a mini-Neptune near the 2:1 MMR straddling the radius valley around the nearby mid-M dwarf TOI-2096
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Pozuelos, F. J., Timmermans, M., Rackham, B. V., Garcia, L. J., Burgasser, A. J., Kane, S. R., Günther, M. N., Stassun, K. G., Van Grootel, V., Dévora-Pajares, M., Luque, R., Edwards, B., Niraula, P., Schanche, N., Wells, R. D., Ducrot, E., Howell, S., Sebastian, D., Barkaoui, K., Waalkes, W., Cadieux, C., Doyon, R., Boyle, R. P., Dietrich, J., Burdanov, A., Delrez, L., Demory, B. -O., de Wit, J., Dransfield, G., Gillon, M., Chew, Y. Gómez Maqueo, Hooton, M. J., Jehin, E., Murray, C. A., Pedersen, P. P., Queloz, D., Thompson, S. J., Triaud, A. H. M. J., Zúñiga-Fernández, S., Collins, K. A., Fausnaugh, M. M., Hedges, C., Hesse, K. M., Jenkins, J. M., Kunimoto, M., Latham, D. W., Shporer, A., Ting, E. B., Torres, G., Amado, P., Rodón, J. R., Rodríguez-López, C., Suárez, J. C., Alonso, R., Benkhaldoun, Z., Berta-Thompson, Z. K., Chinchilla, P., Ghachoui, M., Gómez-Muñoz, M. A., Rebolo, R., Sabin, L., Schroffenegger, U., Furlan, E., Gnilka, C., Lester, K., Scott, N., Aganze, C., Gerasimov, R., Hsu, C., Theissen, C., Apai, D., Chen, W. P., Gabor, P., Henning, T., and Mancini, L.
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Astrophysics - Earth and Planetary Astrophysics - Abstract
Several planetary formation models have been proposed to explain the observed abundance and variety of compositions of super-Earths and mini-Neptunes. In this context, multitransiting systems orbiting low-mass stars whose planets are close to the radius valley are benchmark systems, which help to elucidate which formation model dominates. We report the discovery, validation, and initial characterization of one such system, TOI-2096, composed of a super-Earth and a mini-Neptune hosted by a mid-type M dwarf located 48 pc away. We first characterized the host star by combining different methods. Then, we derived the planetary properties by modeling the photometric data from TESS and ground-based facilities. We used archival data, high-resolution imaging, and statistical validation to support our planetary interpretation. We found that TOI-2096 corresponds to a dwarf star of spectral type M4. It harbors a super-Earth (R$\sim1.2 R_{\oplus}$) and a mini-Neptune (R$\sim1.90 R_{\oplus}$) in likely slightly eccentric orbits with orbital periods of 3.12 d and 6.39 d, respectively. These orbital periods are close to the first-order 2:1 mean-motion resonance (MMR), which may lead to measurable transit timing variations (TTVs). We computed the expected TTVs amplitude for each planet and found that they might be measurable with high-precision photometry delivering mid-transit times with accuracies of $\lesssim$2 min. Moreover, measuring the planetary masses via radial velocities (RVs) is also possible. Lastly, we found that these planets are among the best in their class to conduct atmospheric studies using the James Webb Space Telescope (JWST). The properties of this system make it a suitable candidate for further studies, particularly for mass determination using RVs and/or TTVs, decreasing the scarcity of systems that can be used to test planetary formation models around low-mass stars., Comment: 25 pages, 21 figures. Aceptted for publication in Astronomy & Astrophysics
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- 2023
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222. Patient Characteristics Associated with Time to Next Treatment in Patients with Ovarian Cancer Treated with Niraparib: The PRED1CT Real-World Study
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Dana M. Chase, Soham Shukla, Julia Moore, Tirza Areli Calderón Boyle, Jonathan Lim, Jessica Perhanidis, Jean A. Hurteau, and Jeanne M. Schilder
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Electronic health records ,First-line ,Maintenance therapy ,Niraparib ,Ovarian cancer ,Prognostic factors ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Abstract Introduction Niraparib first-line maintenance (1LM) therapy has demonstrated clinical benefit for patients with ovarian cancer (OC) in clinical trial and real-world settings, but data on factors associated with real-world patient outcomes remain limited. This analysis identified patient characteristics associated with time to next treatment (TTNT), a proxy for real-world progression-free survival, in patients with OC treated with 1LM niraparib monotherapy. Methods This retrospective observational study used a USA nationwide electronic health record-derived deidentified database and included adult patients diagnosed with OC who initiated 1LM niraparib monotherapy after first-line platinum-based chemotherapy. Patients were followed until the earliest occurrence of last clinical activity, death, or end of study period. TTNT was measured from 1LM niraparib initiation to the start of second-line treatment or death. Cox proportional hazards models assessed univariable and multivariable associations between baseline characteristics and TTNT. Results Of 7872 patients diagnosed with OC, 526 met the eligibility criteria and were included in this analysis. Median (IQR) duration of follow-up was 14.1 (7.4–23.6) months. In univariable analyses, age, BRCA/homologous recombination deficiency (HRD) status, socioeconomic status, stage at initial diagnosis, cytoreductive surgery type, and residual disease status were significantly associated with observed TTNT and were introduced into the multivariable model with other clinically relevant variables. In the multivariable analysis, BRCA/HRD status, cytoreductive surgery type, and residual disease status were significantly associated with observed TTNT after covariate adjustment. Conversely, age, Eastern Cooperative Oncology Group performance status, disease stage, niraparib starting dose status, and first-line bevacizumab use were not associated with observed TTNT. Conclusion This real-world, retrospective, observational analysis offers valuable insights on prognostic factors associated with TTNT in patients with OC treated with 1LM niraparib monotherapy after first-line platinum-based chemotherapy. Future studies are needed to examine how additional patient characteristics associated with clinical outcomes may guide treatment decisions and improve outcomes.
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- 2024
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223. Factors influencing fidelity to guideline implementation strategies for improving pain care at cancer centres: a qualitative sub-study of the Stop Cancer PAIN Trial
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Tim Luckett, Jane Phillips, Meera Agar, Linda Richards, Najwa Reynolds, Maja Garcia, Patricia Davidson, Tim Shaw, David Currow, Frances Boyle, Lawrence Lam, Nikki McCaffrey, and Melanie Lovell
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Cancer ,Pain ,Guidelines ,Implementation ,Qualitative ,Public aspects of medicine ,RA1-1270 - Abstract
Abstract Background The Stop Cancer PAIN Trial was a phase III pragmatic stepped wedge cluster randomised controlled trial which compared effectiveness of screening and guidelines with or without implementation strategies for improving pain in adults with cancer attending six Australian outpatient comprehensive cancer centres (n = 688). A system for pain screening was introduced before observation of a ‘control’ phase. Implementation strategies introduced in the ‘intervention’ phase included: (1) audit of adherence to guideline recommendations, with feedback to clinical teams; (2) health professional education via an email-administered ‘spaced education’ module; and (3) a patient education booklet and self-management resource. Selection of strategies was informed by the Capability, Opportunity and Motivation Behaviour (COM-B) Model (Michie et al., 2011) and evidence for each strategy’s stand-alone effectiveness. A consultant physician at each centre supported the intervention as a ‘clinical champion’. However, fidelity to the intervention was limited, and the Trial did not demonstrate effectiveness. This paper reports a sub-study of the Trial which aimed to identify factors inhibiting or enabling fidelity to inform future guideline implementation initiatives. Methods The qualitative sub-study enabled in-depth exploration of factors from the perspectives of personnel at each centre. Clinical champions, clinicians and clinic receptionists were invited to participate in semi-structured interviews. Analysis used a framework method and a largely deductive approach based on the COM-B Model. Results Twenty-four people participated, including 15 physicians, 8 nurses and 1 clinic receptionist. Coding against the COM-B Model identified ‘capability’ to be the most influential component, with ‘opportunity’ and ‘motivation’ playing largely subsidiary roles. Findings suggest that fidelity could have been improved by: considering the readiness for change of each clinical setting; better articulating the intervention’s value proposition; defining clinician roles and responsibilities, addressing perceptions that pain care falls beyond oncology clinicians’ scopes of practice; integrating the intervention within existing systems and processes; promoting patient-clinician partnerships; investing in clinical champions among senior nursing and junior medical personnel, supported by medical leaders; and planning for slow incremental change rather than rapid uptake. Conclusions Future guideline implementation interventions may require a ‘meta-implementation’ approach based on complex systems theory to successfully integrate multiple strategies. Trial registration Registry: Australian New Zealand Clinical Trials Registry; number: ACTRN 12615000064505; data: https://www.anzctr.org.au/Trial/Registration/TrialReview.aspxid=367236&isReview=true .
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- 2024
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224. Fermion-monopole scattering in the Standard Model
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Marieke van Beest, Philip Boyle Smith, Diego Delmastro, Rishi Mouland, and David Tong
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Global Symmetries ,Solitons Monopoles and Instantons ,Wilson, ’t Hooft and Polyakov loops ,Anomalies in Field and String Theories ,Nuclear and particle physics. Atomic energy. Radioactivity ,QC770-798 - Abstract
Abstract We study the scattering of fermions off ’t Hooft lines in the Standard Model. A long-standing paradox suggests that the outgoing fermions necessarily carry fractional quantum numbers. In a previous paper, we resolved this paradox in the context of a number of toy models where we showed that the outgoing radiation is created by operators that are attached to a co-dimension 1 topological surface. This shifts the quantum numbers of the outgoing states associated to non-anomalous symmetries to be integer valued as required, while the quantum numbers associated to anomalous symmetries are fractional. Here we apply these ideas to the Standard Model.
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- 2024
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225. Experiences of antenatal care practices to reduce stillbirth: surveys of women and healthcare professionals pre-post implementation of the Safer Baby Bundle
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Christine Andrews, Frances M. Boyle, Ashley Pade, Philippa Middleton, David Ellwood, Adrienne Gordon, Miranda Davies-Tuck, Caroline Homer, Alison Griffin, Michael Nicholl, Kirstine Sketcher-Baker, and Vicki Flenady
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Stillbirth ,Care bundle ,Survey ,Antenatal care ,Stillbirth prevention ,Gynecology and obstetrics ,RG1-991 - Abstract
Abstract Background The Safer Baby Bundle (SBB) aimed to reduce stillbirth rates in Australia through improving pregnancy care across five elements; smoking cessation, fetal growth restriction (FGR), decreased fetal movements (DFM), side sleeping in late pregnancy and decision making around timing of birth. We assessed experiences of women and healthcare professionals (HCPs) with antenatal care practices around the five elements. Methods A pre-post study design using online surveys was employed to assess change in HCPs awareness, knowledge, and frequency of performing recommended practices (22 in total) and women’s experiences of care received related to reducing their chance of stillbirth. Women who had received antenatal care and HCPs (midwives and doctors) at services participating in the SBB implementation program in two Australian states were invited to participate. Surveys were distributed over January to July 2020 (pre) and August to December 2022 (post). Comparison of pre-post responses was undertaken using Fisher’s exact, Pearson’s chi-squared or Wilcoxon rank-sum tests. Results 1,225 women (pre-1096/post-129) and 1,415 HCPs (pre-1148/post-267, ≥ 83% midwives) completed the surveys. The frequency of HCPs performing best practice ‘all the time’ significantly improved post-SBB implementation across all elements including providing advice to women on side sleeping (20.4–79.4%, p
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- 2024
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226. Real-World First-Line Maintenance Niraparib Monotherapy Use Following Chemotherapy Plus Bevacizumab: The SW1TCH Study
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Bobbie Rimel, Tirza Areli Calderón Boyle, Sara Burns, Jonathan Lim, John Hartman, Linda Kalilani, Jeanne M. Schilder, Jean A. Hurteau, and Amanda Golembesky
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First-line maintenance therapy ,Niraparib ,Ovarian cancer ,Real-world ,Switch maintenance ,Time to next treatment ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Abstract Introduction Clinical trials have demonstrated prolonged survival associated with niraparib first-line maintenance (1LM) therapy, compared with placebo, for patients with ovarian cancer (OC). However, data are limited on real-world 1LM niraparib monotherapy use, particularly as switch 1LM, following first-line (1L) combination chemotherapy plus bevacizumab. This real-world study aimed to describe patient demographics, clinical characteristics, and clinical outcomes of patients with OC receiving 1LM niraparib monotherapy following 1L combination chemotherapy plus bevacizumab. Methods This retrospective observational study used data from a US-based nationwide database of deidentified, electronic health record-derived data. Patients diagnosed with OC during the study period (1 January 2011–30 November 2022, inclusive) were eligible if they received 1L chemotherapy plus bevacizumab treatment followed by 1LM niraparib monotherapy, initiated between 1 January 2017 (inclusive) and 2 September 2022. Patients were followed from index date (initiation of niraparib 1LM) until the first occurrence of death, end of follow-up, or end of study. Clinical outcomes were time to treatment discontinuation (TTD) and time to next treatment (TTNT). Kaplan–Meier curves were used to estimate TTD, TTNT, and 95% confidence intervals (CIs). Results Among 93 patients selected, median age at index was 67 years (interquartile range [IQR] 60–72 years). Most patients had BRCA wild-type/homologous recombination (HR)-proficient or BRCA wild-type/HR unknown disease (75.3%). In all, 18 (19.4%) patients had HR-deficient disease. Five (5.4%) patients had unknown test results for both BRCA and HR deficiency status. Median follow-up time was 16.3 months (IQR 8.7–25.4 months), and median time from end of 1L therapy to 1LM initiation was 35.0 days (IQR 25.0–53.9 days). Median TTD was 9.3 months (95% CI 6.1–11.3 months). Median TTNT was 12.9 months (95% CI 11.5–19.0 months). Conclusions This real-world study provided insights into switch maintenance with 1LM niraparib monotherapy, which may be a viable treatment option for patients with advanced OC.
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- 2024
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227. The perceived social support of parents having bipolar disorder impacts their children’s mental health: a 10-year longitudinal study
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Florencia Trespalacios, Ariel Boyle, Lisa Serravalle, Sheilagh Hodgins, and Mark A. Ellenbogen
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High-risk children ,Developmental psychopathology ,Protective factors ,Bipolar disorder ,Social support ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 ,Neurophysiology and neuropsychology ,QP351-495 - Abstract
Abstract Background The offspring of parents with bipolar disorder (OBD) are at higher risk of developing psychopathology than the offspring of parents with no affective disorder (control). In addition to genetic predisposition, childhood adversity and a stressful family environment are important risk factors for the OBD. Protective factors in parents, such as social support and coping strategies, may buffer the effects of stress on at-risk children. This study tested whether parents’ social support and coping style attenuated the link between risk status (OBD vs. control) and psychopathology in offspring. Methods During offspring’s middle childhood, parents underwent a diagnostic interview and completed social support and coping style questionnaires. Sixty-nine OBD (39 female) and 69 control (29 female) offspring between ages 13 and 29 completed a diagnostic interview approximately 10 years later. Results Parents’ social support satisfaction moderated the link between offspring risk status and their development of substance use disorder (SUD) symptoms (F(1,131) = 5.90, p = .017). Parents’ social network size moderated the link between offspring risk status and their development of anxiety and depression symptoms in an unexpected direction (F(1,131) = 5.07, p = .026). No effects of parents’ coping style were found. Conclusions Among the OBD, having parents with greater social support satisfaction and, unexpectedly, a smaller social network buffered their development of SUD and depression and anxiety symptoms by early adulthood. Parents’ social support may thus have a protective function for children in these high-risk families.
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- 2024
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228. Lattice QCD calculation of the pion distribution amplitude with domain wall fermions at physical pion mass
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Ethan Baker, Dennis Bollweg, Peter Boyle, Ian Cloët, Xiang Gao, Swagato Mukherjee, Peter Petreczky, Rui Zhang, and Yong Zhao
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Hadronic Spectroscopy ,Structure and Interactions ,Lattice QCD ,Parton Distributions ,Resummation ,Nuclear and particle physics. Atomic energy. Radioactivity ,QC770-798 - Abstract
Abstract We present a direct lattice QCD calculation of the x-dependence of the pion distribution amplitude (DA), which is performed using the quasi-DA in large momentum effective theory on a domain-wall fermion ensemble at physical quark masses and spacing a ≈ 0.084 fm. The bare quais-DA matrix elements are renormalized in the hybrid scheme and matched to MS ¯ $$ \overline{\textrm{MS}} $$ with a subtraction of the leading renormalon in the Wilson-line mass. For the first time, we include threshold resummation in the perturbative matching onto the light-cone DA, which resums the large logarithms in the soft gluon limit at next-to-next-to-leading log. The resummed results show controlled scale-variation uncertainty within the range of momentum fraction x ∈ [0.25, 0.75] at the largest pion momentum P z ≈ 1.85 GeV. In addition, we apply the same analysis to quasi-DAs from a highly-improved-staggered-quark ensemble at physical pion mass and a = 0.076 fm. By comparison we find with 2σ confidence level that the DA obtained from chiral fermions is flatter and lower near x = 0.5.
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- 2024
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229. A benchmark of computational methods for correcting biases of established and unknown origin in CRISPR-Cas9 screening data
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Alessandro Vinceti, Raffaele M. Iannuzzi, Isabella Boyle, Lucia Trastulla, Catarina D. Campbell, Francisca Vazquez, Joshua M. Dempster, and Francesco Iorio
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Biology (General) ,QH301-705.5 ,Genetics ,QH426-470 - Abstract
Abstract Background CRISPR-Cas9 dropout screens are formidable tools for investigating biology with unprecedented precision and scale. However, biases in data lead to potential confounding effects on interpretation and compromise overall quality. The activity of Cas9 is influenced by structural features of the target site, including copy number amplifications (CN bias). More worryingly, proximal targeted loci tend to generate similar gene-independent responses to CRISPR-Cas9 targeting (proximity bias), possibly due to Cas9-induced whole chromosome-arm truncations or other genomic structural features and different chromatin accessibility levels. Results We benchmarked eight computational methods, rigorously evaluating their ability to reduce both CN and proximity bias in the two largest publicly available cell-line-based CRISPR-Cas9 screens to date. We also evaluated the capability of each method to preserve data quality and heterogeneity by assessing the extent to which the processed data allows accurate detection of true positive essential genes, established oncogenetic addictions, and known/novel biomarkers of cancer dependency. Our analysis sheds light on the ability of each method to correct biases under different scenarios. AC-Chronos outperforms other methods in correcting both CN and proximity biases when jointly processing multiple screens of models with available CN information, whereas CRISPRcleanR is the top performing method for individual screens or when CN information is not available. In addition, Chronos and AC-Chronos yield a final dataset better able to recapitulate known sets of essential and non-essential genes. Conclusions Overall, our investigation provides guidance for the selection of the most appropriate bias-correction method, based on its strengths, weaknesses and experimental settings.
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- 2024
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230. Automated single-cell proteomics providing sufficient proteome depth to study complex biology beyond cell type classifications
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Claudia Ctortecka, Natalie M. Clark, Brian W. Boyle, Anjali Seth, D. R. Mani, Namrata D. Udeshi, and Steven A. Carr
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Science - Abstract
Abstract The recent technological and computational advances in mass spectrometry-based single-cell proteomics have pushed the boundaries of sensitivity and throughput. However, reproducible quantification of thousands of proteins within a single cell remains challenging. To address some of those limitations, we present a dedicated sample preparation chip, the proteoCHIP EVO 96 that directly interfaces with the Evosep One. This, in combination with the Bruker timsTOF demonstrates double the identifications without manual sample handling and the newest generation timsTOF Ultra identifies up to 4000 with an average of 3500 protein groups per single HEK-293T without a carrier or match-between runs. Our workflow spans 4 orders of magnitude, identifies over 50 E3 ubiquitin-protein ligases, and profiles key regulatory proteins upon small molecule stimulation. This study demonstrates that the proteoCHIP EVO 96-based sample preparation with the timsTOF Ultra provides sufficient proteome depth to study complex biology beyond cell-type classifications.
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- 2024
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231. Circulating KRAS G12D but not G12V is associated with survival in metastatic pancreatic ductal adenocarcinoma
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Jacob E. Till, Lee McDaniel, Changgee Chang, Qi Long, Shannon M. Pfeiffer, Jaclyn P. Lyman, Lacey J. Padrón, Deena M. Maurer, Jia Xin Yu, Christine N. Spencer, Pier Federico Gherardini, Diane M. Da Silva, Theresa M. LaVallee, Charles Abbott, Richard O. Chen, Sean M. Boyle, Neha Bhagwat, Samuele Cannas, Hersh Sagreiya, Wenrui Li, Stephanie S. Yee, Aseel Abdalla, Zhuoyang Wang, Melinda Yin, Dominique Ballinger, Paul Wissel, Jennifer Eads, Thomas Karasic, Charles Schneider, Peter O’Dwyer, Ursina Teitelbaum, Kim A. Reiss, Osama E. Rahma, George A. Fisher, Andrew H. Ko, Zev A. Wainberg, Robert A. Wolff, Eileen M. O’Reilly, Mark H. O’Hara, Christopher R. Cabanski, Robert H. Vonderheide, and Erica L. Carpenter
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Science - Abstract
Abstract While high circulating tumor DNA (ctDNA) levels are associated with poor survival for multiple cancers, variant-specific differences in the association of ctDNA levels and survival have not been examined. Here we investigate KRAS ctDNA (ctKRAS) variant-specific associations with overall and progression-free survival (OS/PFS) in first-line metastatic pancreatic ductal adenocarcinoma (mPDAC) for patients receiving chemoimmunotherapy (“PRINCE”, NCT03214250), and an independent cohort receiving standard of care (SOC) chemotherapy. For PRINCE, higher baseline plasma levels are associated with worse OS for ctKRAS G12D (log-rank p = 0.0010) but not G12V (p = 0.7101), even with adjustment for clinical covariates. Early, on-therapy clearance of G12D (p = 0.0002), but not G12V (p = 0.4058), strongly associates with OS for PRINCE. Similar results are obtained for the SOC cohort, and for PFS in both cohorts. These results suggest ctKRAS G12D but not G12V as a promising prognostic biomarker for mPDAC and that G12D clearance could also serve as an early biomarker of response.
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- 2024
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232. Identifying longitudinal cognitive resilience from cross-sectional amyloid, tau, and neurodegeneration
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Rory Boyle, Diana L. Townsend, Hannah M. Klinger, Catherine E. Scanlon, Ziwen Yuan, Gillian T. Coughlan, Mabel Seto, Zahra Shirzadi, Wai-Ying Wendy Yau, Roos J. Jutten, Christoph Schneider, Michelle E. Farrell, Bernard J. Hanseeuw, Elizabeth C. Mormino, Hyun-Sik Yang, Kathryn V. Papp, Rebecca E. Amariglio, Heidi I. L. Jacobs, Julie C. Price, Jasmeer P. Chhatwal, Aaron P. Schultz, Michael J. Properzi, Dorene M. Rentz, Keith A. Johnson, Reisa A. Sperling, Timothy J. Hohman, Michael C. Donohue, Rachel F. Buckley, and for the Alzheimer’s Disease Neuroimaging Initiative
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Longitudinal analysis ,Alzheimer’s disease ,Amyloid ,Tau ,PET ,MRI ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 ,Neurology. Diseases of the nervous system ,RC346-429 - Abstract
Abstract Background Leveraging Alzheimer’s disease (AD) imaging biomarkers and longitudinal cognitive data may allow us to establish evidence of cognitive resilience (CR) to AD pathology in-vivo. Here, we applied latent class mixture modeling, adjusting for sex, baseline age, and neuroimaging biomarkers of amyloid, tau and neurodegeneration, to a sample of cognitively unimpaired older adults to identify longitudinal trajectories of CR. Methods We identified 200 Harvard Aging Brain Study (HABS) participants (mean age = 71.89 years, SD = 9.41 years, 59% women) who were cognitively unimpaired at baseline with 2 or more timepoints of cognitive assessment following a single amyloid-PET, tau-PET and structural MRI. We examined latent class mixture models with longitudinal cognition as the dependent variable and time from baseline, baseline age, sex, neocortical Aβ, entorhinal tau, and adjusted hippocampal volume as independent variables. We then examined group differences in CR-related factors across the identified subgroups from a favored model. Finally, we applied our favored model to a dataset from the Alzheimer’s Disease Neuroimaging Initiative (ADNI; n = 160, mean age = 73.9 years, SD = 7.6 years, 60% women). Results The favored model identified 3 latent subgroups, which we labelled as Normal (71% of HABS sample), Resilient (22.5%) and Declining (6.5%) subgroups. The Resilient subgroup exhibited higher baseline cognitive performance and a stable cognitive slope. They were differentiated from other groups by higher levels of verbal intelligence and past cognitive activity. In ADNI, this model identified a larger Normal subgroup (88.1%), a smaller Resilient subgroup (6.3%) and a Declining group (5.6%) with a lower cognitive baseline. Conclusion These findings demonstrate the value of data-driven approaches to identify longitudinal CR groups in preclinical AD. With such an approach, we identified a CR subgroup who reflected expected characteristics based on previous literature, higher levels of verbal intelligence and past cognitive activity.
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- 2024
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233. Multicentric short term and safety study of ineffective esophageal motility patients treated with RefluxStop device
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J. Feka, M. Saad, N. Boyle, M. Paireder, I. Kristo, E. Rieder, R. Asari, and S. F. Schoppmann
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GERD ,Dysphagia ,RefluxStop ,His angle reconstruction ,Medicine ,Science - Abstract
Abstract Gastroesophageal reflux disease (GERD) presents a general health problem with a variety of symptoms and an impairment of life quality. Conservative therapies do not offer sufficient symptom relief in up to 30% of patients. Patients who suffer from ineffective esophageal motility (IEM) and also GERD may exhibit symptoms ranging from mild to severe. In cases where surgical intervention becomes necessary for this diverse group of patients, it is important to consider the potential occurrence of postoperative dysphagia. RefluxStop is a new alternative anti-reflux surgery potentially reducing postoperative dysphagia rates. In this bicentric tertiary hospital observational study consecutive patients diagnosed with PPI refractory GERD and IEM that received RefluxStop implantation were included. A first safety and efficacy evaluation including clinical examination and GERD-HRQL questionnaire was conducted. 40 patients (25 male and 15 female) were included. 31 patients (77.5%) were on PPI at time of surgery, with mean acid exposure time of 8.14% ± 2.53. The median hospital stay was 3 days. Postoperative QoL improved significantly measured by GERD HRQL total score from 32.83 ± 5.08 to 6.6 ± 3.71 (p
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- 2024
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234. Description of patterns of ear and tail lesions during the grower-finisher period in a commercial pig farm
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Nienke van Staaveren, Joana Pessoa, Laura Ann Boyle, and Julia Adriana Calderón Díaz
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Production diseases ,Swine ,Welfare ,Ear necrosis ,Tail biting ,Animal culture ,SF1-1100 ,Veterinary medicine ,SF600-1100 - Abstract
Abstract Background Ear and tail lesions are prevalent indicators of impaired welfare observed in pig production with different multifactorial causes. Understanding the progression of ear and tail lesions over time is important to implement preventative strategies on commercial pig farms. Therefore, this case study aimed to provide a detailed account of patterns of ear and tail lesions in pigs on a single commercial farm during the grower-finisher period. Case presentation A total of 1,676 12-week old pigs (n = 773 females and n = 903 males, all tail docked) were followed from arrival to the grower facilities until transferred to the finisher stage on a commercial pig farm in Ireland. Pigs were individually weighed and inspected for the severity of fresh ear and tail lesions (score 0–4) on transfer to the first grower (24.9 ± 5.33 kg, 12 weeks of age, n = 1,676 pigs), second grower (33.3 ± 7.04 kg, 14 weeks of age, n = 1,641 pigs), and finisher stage (60.2 ± 7.74 kg, 18 weeks of age, n = 1,626 pigs). Due to the low number of pigs with high scores, ear lesions were classified as no (score 0), mild (score 1), moderate (score 2) and severe (score ≥ 3) and tail lesions were classified as no (score 0), mild (score 1), and moderate-to-severe (score ≥ 2). Ear lesions were more prevalent than tail lesions at each inspection. There were approx. 19% of pigs with ear lesions at all three inspections but no pigs presented with tail lesions at all three inspections. When considering the specific severity categories, we observed 32 different ear lesion score combinations and 15 different tail lesion score combinations across the three inspections. Conclusion The high number of observed patterns of ear and tail lesions suggest large individual variability in lesion progression. Ear lesions were more of an issue than tail lesions and little is known about this health and welfare problem indicating that further research into causes and management strategies is needed.
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- 2024
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235. Remote feedback in endovascular simulation training: a mixed-methods study
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Adam F. Roche, Daragh Moneley, Tim Lawler, Emily Boyle, Greg Gosi, Adrian O’Callaghan, Caitriona Cahir, Dara O’Keeffe, and Claire M. Condron
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Endovascular ,Virtual reality ,Simulation ,Education ,Patient safety ,Computer applications to medicine. Medical informatics ,R858-859.7 - Abstract
Abstract Background There is an increasing need to increase simulation-based learning opportunities for vascular surgery residents in endovascular skills training. This study aims to explore the effectiveness of remote expert instructional feedback of endovascular simulation-based education, as a means of increasing training opportunities in this area for vascular surgery residents. Methods A mixed-methods study design was adopted. Twelve vascular surgery residents from Ireland were tasked with completing two endovascular renal artery procedures: one with in-person expert feedback and the other with remote instruction. Participants ranged in experience levels from second year to final year of residency. Following the training activities, interviews and a questionnaire were employed to gather information on the usefulness of remote feedback. Results There was no significant difference reported by participants using a post-event validated questionnaire between remote and in-person feedback. During the interviews, participants expressed mixed feelings about the presence of the educator while practicing, but they eventually saw no limiting factors to their practice when the trainer provided remote feedback. When receiving performance feedback remotely, clear communication and a shared knowledge of the task development are critical to success. Conclusions We believe these findings can inform the design and development of remote learning and assessment of endovascular skills training and ultimately provide increased opportunities for more skills practice for vascular surgical residents.
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- 2024
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236. Clonal associations between lymphocyte subsets and functional states in rheumatoid arthritis synovium
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Garrett Dunlap, Aaron Wagner, Nida Meednu, Ruoqiao Wang, Fan Zhang, Jabea Cyril Ekabe, Anna Helena Jonsson, Kevin Wei, Saori Sakaue, Aparna Nathan, Accelerating Medicines Partnership Program: Rheumatoid Arthritis and Systemic Lupus Erythematosus (AMP RA/SLE) Network, Vivian P. Bykerk, Laura T. Donlin, Susan M. Goodman, Gary S. Firestein, David L. Boyle, V. Michael Holers, Larry W. Moreland, Darren Tabechian, Costantino Pitzalis, Andrew Filer, Soumya Raychaudhuri, Michael B. Brenner, Juilee Thakar, Andrew McDavid, Deepak A. Rao, and Jennifer H. Anolik
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Science - Abstract
Abstract Rheumatoid arthritis (RA) is an autoimmune disease involving antigen-specific T and B cells. Here, we perform single-cell RNA and repertoire sequencing on paired synovial tissue and blood samples from 12 seropositive RA patients. We identify clonally expanded CD4 + T cells, including CCL5+ cells and T peripheral helper (Tph) cells, which show a prominent transcriptomic signature of recent activation and effector function. CD8 + T cells show higher oligoclonality than CD4 + T cells, with the largest synovial clones enriched in GZMK+ cells. CD8 + T cells with possibly virus-reactive TCRs are distributed across transcriptomic clusters. In the B cell compartment, NR4A1+ activated B cells, and plasma cells are enriched in the synovium and demonstrate substantial clonal expansion. We identify synovial plasma cells that share BCRs with synovial ABC, memory, and activated B cells. Receptor-ligand analysis predicted IFNG and TNFRSF members as mediators of synovial Tph-B cell interactions. Together, these results reveal clonal relationships between functionally distinct lymphocyte populations that infiltrate the synovium of patients with RA.
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- 2024
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237. Potential for use of tetris in the neonatal unit – a scoping review
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Victoria Elizabeth Mabel Craig, Derek Francis McLaughlin, Karen P. Devlin, Aiveen Higgins, and Breidge Boyle
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Tetris ,Post-traumatic stress symptoms ,Neonatal ,Preterm parents ,Computer applications to medicine. Medical informatics ,R858-859.7 - Abstract
Abstract Background Playing Tetris is a relatively new concept when considering how to treat or prevent post-traumatic stress symptoms (PTSS). Benefits have been identified regarding how playing the game can influence traumatic memory processing and storage. However, the concept is under-explored and can potentially help populations who are at risk of and are known to experience post-traumatic stress, such as parents of preterm infants in the Neonatal Unit. The aim of the review was to establish if preterm parents playing Tetris was a feasible option to potentially minimise PTSS. Method A scoping review was conducted using PRISMA-ScR guidance. Databases searched were Cinahl, Medline and PsychInfo, over a 20 year period (2003-2023). Titles and abstracts were screened before analysis of full-text articles. A variety of clinical and experimental studies were examined, with differing trauma exposure experienced by participants. Results Thirteen articles were reviewed and four common themes identified. These were memory consolidation, playing Tetris and its effect on intrusive memories (IMs), the effect on the brain and the acceptability as a technique to minimize PTSS in clinical trials. Conclusion Tetris, in theory, is a first-aid intervention and has the potential to minimise the impact of trauma. Based on the findings of the review, Tetris has been effective in other clinical areas and deemed acceptable by participants. Therefore, Tetris is worthy of consideration for use in the population of preterm parents.
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- 2024
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238. Validation of Camera Networks Used for the Assessment of Speech Movements
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L. Boyle, P. Helmholz, D. D. Lichti, and R. Ward
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Technology ,Engineering (General). Civil engineering (General) ,TA1-2040 ,Applied optics. Photonics ,TA1501-1820 - Abstract
The term speech sound disorder describes a range of speech difficulties in children that affect speech intelligibility. Differential diagnosis is difficult and reliant on access to validated and reliable measures. Technological advances aim to provide clinical access to measurements that have been identified as beneficial in diagnosing speech disorders. To generate objective measurements and, consequently, automatic scores, the output from multi-camera networks is required to produce quality results. The quality of photogrammetric results is usually expressed in terms of the precision and reliability of the network. Precision is determined at the design stage as a function of the geometry of the network. In this manuscript, we focus on the design of a photogrammetric camera network using three cameras. We adopted a similar workflow as Alsadika et al. (2012) and tested serval network configurations. As the distances from the camera stations to object points were fixed to 3500mm, only the horizontal and vertical placements of the cameras were varied. Horizontal angles were changed within an increment of 10º, and vertical angles were changed within an increment of 5º. The object space coordinates of GCPs for each camera configuration were assessed in terms of horizontal error ellipses and vertical precision. The best design was the maximum horizontal and vertical convergence angles of 90° and 30°. The existing camera network used to capture videos for speech assessment was approximately as good as the top third of tested designs. However, from a validation perspective, it can be concluded that the design is viable for continued use.
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- 2024
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239. Evaluating Linear Coral Growth Estimation Using Photogrammetry and Alternative Point Cloud Comparison Methods
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P. Helmholz, T. Bassett, L. Boyle, N. Browne, I. Parnum, M. Moustaka, and R. Evans
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Technology ,Engineering (General). Civil engineering (General) ,TA1-2040 ,Applied optics. Photonics ,TA1501-1820 - Abstract
Corals are critical reef-building organisms, providing essential habitat and ecosystem services. Tracking coral growth over time indicates coral reef health, which can be measured using various established techniques. Several coral growth-related studies have successfully applied photogrammetry to a particular coral of various types. While the focus of previous work was on standardised data processing and, to a certain degree, on the assessment of different point cloud comparison methods (Lange et al. 2022), little attention has been given to the impact of camera calibration. This study measured the annual linear extension of five Acropora spp. colonies using photogrammetry and evaluated all stages of imagery processing. A high focus was given to the analysis of the camera calibration method and the validation of camera parameters derived using an in-situ calibration of coral images with scale bars placed in the camera's field of view. We demonstrate that this method is as reliable as the calibration using a calibration frame. This study also examined the impact of the different point cloud comparison methods for Acropora spp. More specifically, the derived point clouds are compared by applying the point-to-point and point-to-model methods and manually selecting 12 coral branch tips. Histograms derived from the comparison methods were analysed and deemed a suitable and efficient alternative approach for measuring the maximum growth rate of mature colonies over shorter time periods (1 year or less).
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- 2024
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240. Undercounting diagnoses in Australian general practice: a data quality study with implications for population health reporting
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Rachel Canaway, Christine Chidgey, Christine Mary Hallinan, Daniel Capurro, and Douglas IR Boyle
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Australia ,Data quality ,Data reporting ,Data standards ,Diagnosis ,Primary health care ,Computer applications to medicine. Medical informatics ,R858-859.7 - Abstract
Abstract Background Diagnosis can often be recorded in electronic medical records (EMRs) as free-text or using a term with a diagnosis code. Researchers, governments, and agencies, including organisations that deliver incentivised primary care quality improvement programs, frequently utilise coded data only and often ignore free-text entries. Diagnosis data are reported for population healthcare planning including resource allocation for patient care. This study sought to determine if diagnosis counts based on coded diagnosis data only, led to under-reporting of disease prevalence and if so, to what extent for six common or important chronic diseases. Methods This cross-sectional data quality study used de-identified EMR data from 84 general practices in Victoria, Australia. Data represented 456,125 patients who attended one of the general practices three or more times in two years between January 2021 and December 2022. We reviewed the percentage and proportional difference between patient counts of coded diagnosis entries alone and patient counts of clinically validated free-text entries for asthma, chronic kidney disease, chronic obstructive pulmonary disease, dementia, type 1 diabetes and type 2 diabetes. Results Undercounts were evident in all six diagnoses when using coded diagnoses alone (2.57–36.72% undercount), of these, five were statistically significant. Overall, 26.4% of all patient diagnoses had not been coded. There was high variation between practices in recording of coded diagnoses, but coding for type 2 diabetes was well captured by most practices. Conclusion In Australia clinical decision support and the reporting of aggregated patient diagnosis data to government that relies on coded diagnoses can lead to significant underreporting of diagnoses compared to counts that also incorporate clinically validated free-text diagnoses. Diagnosis underreporting can impact on population health, healthcare planning, resource allocation, and patient care. We propose the use of phenotypes derived from clinically validated text entries to enhance the accuracy of diagnosis and disease reporting. There are existing technologies and collaborations from which to build trusted mechanisms to provide greater reliability of general practice EMR data used for secondary purposes.
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- 2024
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241. Germline variation contributes to false negatives in CRISPR-based experiments with varying burden across ancestries
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Sean A. Misek, Aaron Fultineer, Jeremie Kalfon, Javad Noorbakhsh, Isabella Boyle, Priyanka Roy, Joshua Dempster, Lia Petronio, Katherine Huang, Alham Saadat, Thomas Green, Adam Brown, John G. Doench, David E. Root, James M. McFarland, Rameen Beroukhim, and Jesse S. Boehm
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Science - Abstract
Abstract Reducing disparities is vital for equitable access to precision treatments in cancer. Socioenvironmental factors are a major driver of disparities, but differences in genetic variation likely also contribute. The impact of genetic ancestry on prioritization of cancer targets in drug discovery pipelines has not been systematically explored due to the absence of pre-clinical data at the appropriate scale. Here, we analyze data from 611 genome-scale CRISPR/Cas9 viability experiments in human cell line models to identify ancestry-associated genetic dependencies essential for cell survival. Surprisingly, we find that most putative associations between ancestry and dependency arise from artifacts related to germline variants. Our analysis suggests that for 1.2-2.5% of guides, germline variants in sgRNA targeting sequences reduce cutting by the CRISPR/Cas9 nuclease, disproportionately affecting cell models derived from individuals of recent African descent. We propose three approaches to mitigate this experimental bias, enabling the scientific community to address these disparities.
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- 2024
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242. Promoting Students' Safety and Wellbeing: Ethical Practice in Schools
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Graham, Anne, Canosa, Antonia, Boyle, Tess, Moore, Tim, Taylor, Nicola, Anderson, Donnah, and Robinson, Sally
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Although 'child safety' is now a national policy priority in Australia, there is little research exploring the "practices" in schools that contribute to children and young people's felt sense of safety and wellbeing. Drawing on a mixed-method Australian Research Council (ARC) Discovery project, this article presents findings from interviews with school staff (N = 10), leaders (N = 5) and nine focus groups with students (N = 58), in primary and secondary schools in three Australian states (New South Wales, Victoria and South Australia). We employ relational ethics, recognition theory and the theory of practice architectures to explore practices at school that support student wellbeing and safety. The findings contribute significantly to understanding the 'bundled' nature of current practices and the conditions that enable and constrain these. Close attention to these findings is critical as schools seek to operationalise the National Child Safe Principles and refine ongoing safeguarding procedures. The findings have informed the development of an online survey that is currently testing, on a much larger scale, which elements of ethical practice are most positively associated with students' safety, wellbeing and recognition at school.
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- 2023
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243. Fermion-monopole scattering in the Standard Model
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van Beest, Marieke, Smith, Philip Boyle, Delmastro, Diego, Mouland, Rishi, and Tong, David
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- 2024
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244. Progress and challenges of developing volatile metabolites from exhaled breath as a biomarker platform
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Chou, Hsuan, Godbeer, Lucy, Allsworth, Max, Boyle, Billy, and Ball, Madeleine L.
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- 2024
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245. Federal Financial Aid for Students with Intellectual Disability. Insight: A Think College Brief on Policy, Research, & Practice. Issue No. 45. Update
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University of Massachusetts Boston, Institute for Community Inclusion, University of Massachusetts Boston, Think College, Weir, Cate, and Boyle, M.
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This Insight Brief discusses how students with intellectual disability can utilize federal financial aid to help pay for college. This publication is updated annually to reflect current legislation and policy related to federal financial aid for students with intellectual disabilities. The information provided is current as of January 2023.
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- 2023
246. Low-energy quasi-circular electron correlations with charge order wavelength in Bi2Sr2CaCu2O8+δ.
- Author
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Scott, Kirsty, Kisiel, Elliot, Boyle, Timothy, Basak, Rourav, Jargot, Gaëtan, Das, Sarmistha, Agrestini, Stefano, Garcia-Fernandez, Mirian, Choi, Jaewon, Pelliciari, Jonathan, Li, Jiemin, Zhong, Ruidan, Schneeloch, John, Gu, Genda, Légaré, François, Kemper, Alexander, Zhou, Ke-Jin, Bisogni, Valentina, Blanco-Canosa, Santiago, Frano, Alex, Boschini, Fabio, da Silva Neto, Eduardo, and Chuang, Yi-De
- Abstract
Most resonant inelastic x-ray scattering (RIXS) studies of dynamic charge order correlations in the cuprates have focused on the high-symmetry directions of the copper oxide plane. However, scattering along other in-plane directions should not be ignored as it may help understand, for example, the origin of charge order correlations or the isotropic scattering resulting in strange metal behavior. Our RIXS experiments reveal dynamic charge correlations over the qx-qy scattering plane in underdoped Bi2Sr2CaCu2O8+δ. Tracking the softening of the RIXS-measured bond-stretching phonon, we show that these dynamic correlations exist at energies below approximately 70 meV and are centered around a quasi-circular manifold in the qx-qy scattering plane with radius equal to the magnitude of the charge order wave vector, qCO. This phonon-tracking procedure also allows us to rule out fluctuations of short-range directional charge order (i.e., centered around [qx = ±qCO, qy = 0] and [qx = 0, qy = ±qCO]) as the origin of the observed correlations.
- Published
- 2023
247. Correction to: Ethnic inequities in use of breast conserving surgery and radiation therapy in Aotearoa/New Zealand: which factors contribute?
- Author
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Boyle, Leah, Lawrenson, Ross, Nosa, Vili, Campbell, Ian, and Tin Tin, Sandar
- Published
- 2024
- Full Text
- View/download PDF
248. Recruiting Preservice Teachers to Top University Special Education Programs
- Author
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Miller, Erica Ellsworth, Cutrer-Párraga Elizabeth, Fugeson, Isabelle, Pinneger, Stephanie, Hall-Kenyon, Kendra, Smith, Barbara, Bussey, Heidi, and Boyle, Jasmine
- Abstract
Annually, 13% of special educators leave teaching, twice that of general educators (Wong et al., 2017). In June 2017, the U.S. Department of Education and Office of Postsecondary Education announced that 46 states were drastically short of special education teachers (Robinson et al., 2019). This study explores how university special education (SPED) teacher preparation program descriptions entice students to enroll in university SPED program. Results indicate disconnects between university SPED descriptions and the realities of SPED teachers will face in special education classrooms.
- Published
- 2022
249. Back to School for All: Helping Students Recover by Creating Safe and Welcoming Environments
- Author
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Vachon, Todd E., Crawley, Kayla, and Boyle, James
- Abstract
The American Federation of Teachers (AFT) launched a national Back to School for All (B2S) campaign in the summer of 2021. The B2S campaign was a concerted effort by teachers and staff across the United States to tackle barriers to safe, in-person learning and to ensure that all students feel welcome. The campaign served as a catalyst for bringing students back into public schools, colleges, and universities through a vast public outreach effort when students return to schools after the COVID-19 pandemic. This work is all the more urgent because the United States saw an unprecedented decline in student enrollment in public schools, colleges, and universities over the past two years. This article examines the the B2S campaign and how teachers have begun to build stronger relationships with the communities they serve.
- Published
- 2022
250. REEdI Design Thinking for Developing Engineering Curricula
- Author
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Boyle, Fiona, Walsh, Joseph, Riordan, Daniel, Geary, Cathal, Kelly, Padraig, and Broderick, Eilish
- Abstract
Universities are coming under increasing pressure to re-invent the way that engineering is taught in order to produce graduates that are capable of meeting the skills needs of the country's industries. This paper described an active project where Design Thinking (DT) methodology is being applied in a novel way to Engineering Curriculum Development. Enterprise partners from a range of different manufacturing sectors participated in a series of Curriculum Development workshops and the results were cross referenced with subjects taught on existing engineering programmes internationally. This process highlighted the need for increased training in Lean, 6-Sigma, transversal and soft skills competencies, and the need to review how and when content is delivered. A survey was developed from the results of the workshops and sent out to a larger cohort of industry contacts for feedback on the proposed Engineering curriculum. Design Thinking methodology has helped ensure our customers' needs are met by building the curriculum framework around competencies identified by both industry and academia while ensuring the students engage in a significant learning experience through experiential and applied learning using the latest immersive technologies.
- Published
- 2022
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