2,158 results on '"Biological marker"'
Search Results
202. Candidate Biological Markers for Social Anxiety Disorder: A Systematic Review
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Alice Caldiroli, Enrico Capuzzi, Letizia Affaticati, Teresa Surace, Carla Di Forti, Antonios Dakanalis, Massimo Clerici, Massimiliano Buoli, Caldiroli, A, Capuzzi, E, Affaticati, L, Surace, T, Di Forti, C, Dakanalis, A, Clerici, M, and Buoli, M
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Inorganic Chemistry ,neuroimaging ,systematic review ,Organic Chemistry ,social anxiety disorder ,General Medicine ,Physical and Theoretical Chemistry ,biological marker ,Molecular Biology ,Spectroscopy ,Catalysis ,social phobia ,Computer Science Applications - Abstract
Social anxiety disorder (SAD) is a common psychiatric condition associated with a high risk of psychiatric comorbidity and impaired social/occupational functioning when not promptly treated. The identification of biological markers may facilitate the diagnostic process, leading to an early and proper treatment. Our aim was to systematically review the available literature about potential biomarkers for SAD. A search in the main online repositories (PubMed, ISI Web of Knowledge, PsychInfo, etc.) was performed. Of the 662 records screened, 61 were included. Results concerning cortisol, neuropeptides and inflammatory/immunological/neurotrophic markers remain inconsistent. Preliminary evidence emerged about the role of chromosome 16 and the endomannosidase gene, as well as of epigenetic factors, in increasing vulnerability to SAD. Neuroimaging findings revealed an altered connectivity of different cerebral areas in SAD patients and amygdala activation under social threat. Some parameters such as salivary alpha amylase levels, changes in antioxidant defenses, increased gaze avoidance and QT dispersion seem to be associated with SAD and may represent promising biomarkers of this condition. However, the preliminary positive correlations have been poorly replicated. Further studies on larger samples and investigating the same biomarkers are needed to identify more specific biological markers for SAD.
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- 2023
203. Can We Determine High Risk Groups in Schizophrenia? A Hypothesis
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Bulent Demirbek and Osman Ozdemir
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Schizophrenia ,viral infections ,biological marker ,Psychiatry ,RC435-571 - Abstract
Neurodevelopmental hypothesis suggested that schizophrenia is a disorder of early brain development, in which the brain structural abnormalities are present. The causes of the abnormal processes remains unclear however, Genetics vulnerability, obstetric complications and viral infections have been shown to play a role in this disorder. Several studies have shown a greater incidence of winter or spring births in patients. Prenatal and perinatal infections, especially in the second trimester of pregnancy, have been considered a plausible risk factor for schizophrenia. Maternal exposure to influenza, herpes viruses, varicella zoster virus, Epstein-Barr virus, cytomegalovirus and rarely rubella virus infections confers an increased risk of schizophrenia to the developing offspring. As clinicians, we observed that our patients with psychotic disorder were not exposed to the viral infections even during epidemic. We hypothesized that perinatal viral infections have been associated with lifelong immunity to this infectious diseases which on the other hand cause an increased risk of developing schizophrenia. If we could determine antibodies against these viruses among patients with schizophrenia, perhaps we will be able to identify accurate markers heralding psychotic illness as well as can use these markers in a large population-based sample.
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- 2012
204. Driving innovation for rare skin cancers: utilizing common tumours and machine learning to predict immune checkpoint inhibitor response
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side effect ,phenotype ,adult ,human cell ,drug combination ,review ,squamous cell skin carcinoma ,Immune checkpoint inhibitor ,biological marker ,merkel cell carcinoma ,Merkel cell carcinoma ,machine learning ,big data ,Machine learning ,Squamous cell skin cancer ,human ,immunotherapy ,transfer of learning - Abstract
Metastatic Merkel cell carcinoma (MCC) and cutaneous squamous cell carcinoma (cSCC) are rare and both show impressive responses to immune checkpoint inhibitor treatment. However, at least 40% of patients do not respond to these expensive and potentially toxic drugs. Development of predictive biomarkers of response and rational, effective combination treatment strategies in these rare, often frail patient populations is challenging. This review discusses the pathophysiology and treatment of MCC and cSCC, with a particular focus on potential biomarkers of response to immunotherapy, and discusses how transfer learning using big data collected from patients with common tumours can be used in combination with deep phenotyping of rare tumours to develop predictive biomarkers and elucidate novel treatment targets.
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- 2019
205. Driving innovation for rare skin cancers: utilizing common tumours and machine learning to predict immune checkpoint inhibitor response
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Rudolf S N Fehrmann, Mathilde Jalving, E.G.E. de Vries, and Jahlisa S. Hooiveld-Noeken
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Oncology ,medicine.medical_specialty ,side effect ,phenotype ,medicine.medical_treatment ,Immune checkpoint inhibitors ,drug combination ,review ,squamous cell skin carcinoma ,Immune checkpoint inhibitor ,Treatment targets ,Merkel cell carcinoma ,big data ,Internal medicine ,Machine learning ,medicine ,Squamous cell skin cancer ,human ,Rare skin cancers ,RC254-282 ,Predictive biomarker ,business.industry ,adult ,human cell ,food and beverages ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,Immunotherapy ,medicine.disease ,biological marker ,Potential biomarkers ,immunotherapy ,business ,transfer of learning - Abstract
Metastatic Merkel cell carcinoma (MCC) and cutaneous squamous cell carcinoma (cSCC) are rare and both show impressive responses to immune checkpoint inhibitor treatment. However, at least 40% of patients do not respond to these expensive and potentially toxic drugs. Development of predictive biomarkers of response and rational, effective combination treatment strategies in these rare, often frail patient populations is challenging. This review discusses the pathophysiology and treatment of MCC and cSCC, with a particular focus on potential biomarkers of response to immunotherapy, and discusses how transfer learning using big data collected from patients with common tumours can be used in combination with deep phenotyping of rare tumours to develop predictive biomarkers and elucidate novel treatment targets.
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- 2019
206. The Clinical Significiance of Multimarker Index for Early Diagnosis Among the Patients Admitted to the Emergency Department with Suspected Stroke
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İlhan Korkmaz, Şevki Hakan Eren, Fatma Mutlu Kukul Güven, and Hatice Seğmen
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Stroke ,biological marker ,Medicine - Abstract
Objective: Cerebrovascular diseases have a high rate in emergency services. We investigated the value of MMX in plasma for early diagnosis among the patients with suspected cerebrovascular disease and the correlation between the emergency, triage and neurology physician diagnoses. Material and Methods: It is a prospective study carried out with 83 patients. Pre-prepared forms were filled with the data about the patients. Samples of 1cc venous blood were measured for MMX and the results classified as normal or pathologic. The correlation between the results and physician diagnosis was investigated. Results: 44 (53%) of 83 patients were male, 39 (47%) were female. The average age was 69.1 (37-90) years. Neurology physician diagnosis, accepted as the gold standard, was compared with the triage, emergency physician diagnosis and MMX results by ROC curve analysis, and the difference was not significiant (p>0.05). When the diagnoses of the emergency physician were compared with the MMX results, the compatiblity for definite and probable strokes were 100% and 92.1%. The rates for triage physician were 100% and 96.4%. Conclusion: As a result of this study we can say that the stroke probablity is high if MMX is high in patients with suspected cerebrovascular disease, but more studies with large population groups are needed for specifity assessment.
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- 2011
207. Marked elevations in pro-inflammatory polyunsaturated fatty acid metabolites in females with irritable bowel syndrome
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Gerard Clarke, Peter Fitzgerald, Alan A. Hennessy, Eugene M. Cassidy, Eamonn M.M. Quigley, Paul Ross, Catherine Stanton, John F. Cryan, and Timothy G. Dinan
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arachidonic acid ,biological marker ,eicosanoid ,gas chromatography ,IBS ,pro-inflammatory profile ,Biochemistry ,QD415-436 - Abstract
Irritable bowel syndrome (IBS) is the most common functional gastrointestinal disorder referred to gastroenterologists. Although the pathophysiology remains unclear, accumulating evidence points to the presence of low-level immune activation both in the gut and systemically. Circulating polyunsaturated fatty acids (PUFA) have recently attracted attention as being altered in a variety of disease states. Arachidonic acid (AA), in particular, has been implicated in the development of a pro-inflammatory profile in a number of immune-related disorders. AA is the precursor of a number of important immunomodulatory eicosanoids, including prostaglandin E2 (PGE2) and leukotriene B4 (LTB4). We investigated the hypothesis that elevated plasma AA concentrations in plasma contribute to the proposed pro-inflammatory profile in IBS. Plasma AA and related PUFA were quantified by gas chromatography analysis in IBS patients and controls. Both PGE2 and LTB4 were measured in serum using commercially available ELISA assays. AA concentrations were elevated in our patient cohort compared with healthy controls. Moreover, we demonstrated that this disturbance in plasma AA concentrations leads to downstream elevations in eicosanoids. Together, our data identifies a novel proinflammatory mechanism in irritable bowel syndrome and also suggests that elevated arachidonic acid levels in plasma may serve as putative biological markers in this condition.
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- 2010
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208. Early childhood height-adjusted total kidney volume as a risk marker of kidney survival in ARPKD
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Nalcacioglu, Hulya, Dunand, Oliver, Mastrangelo, Antonio, Murer, Luisa, Emma, Francesco, Ruzgiene, Dovile, Taranta-Janusz, Katarzyna, Balasz-Chmielewska, Irena, Miklaszewska, Monika, Stanczyk, Malgorzata, Sikora, Przemyslaw, Kowalewska, Claudia, Szczepanska, Maria, Teixeira, Ana, Rachisan, Andreea, Papachristou, Fotios, Paripović, Dušan, Prikhodina, Larisa, Jilani, Houweyda, Bayazit, Aysun Karabay, Soylu, Alper, Candan, Cengiz, Sever, Lale, Emre, Sevinc, Cicek, Neslihan, Akinci, Nurver, Mir, Sevgi, Poyrazoğlu, Hakan M., Tabel, Yilmaz, Mencarelli, Francesca, Burgmaier, Kathrin, Kilian, Samuel, Arbeiter, Klaus, Atmis, Bahriye, Büscher, Anja, Derichs, Ute, Dursun, Ismail, Duzova, Ali, Eid, Loai Akram, Galiano, Matthias, Gessner, Michaela, Gokce, Ibrahim, Haeffner, Karsten, Hooman, Nakysa, Jankauskiene, Augustina, Körber, Friederike, Longo, Germana, Massella, Laura, Mekahli, Djalila, Miloševski-Lomić, Gordana, Rus, Rina, Shroff, Rukshana, Stabouli, Stella, Weber, Lutz T., Wygoda, Simone, Yilmaz, Alev, Zachwieja, Katarzyna, Zagozdzon, Ilona, Dötsch, Jörg, Schaefer, Franz, Liebau, Max Christoph, Potemkina, Alexandra, Ranguelov, Nadejda, Collard, Laure, De Mul, Aurélie, Feldkoetter, Markus, Seeman, Tomas, Zieg, Jakub, Thumfart, Julia, Grundmann, Franziska, Buchholz, Björn, Pape, Lars, Gross, Oliver, Patzer, Ludwig, Schild, Raphael, Haffner, Dieter, Bernhardt, Wanja, Wuehl, Elke, Henn, Michael, Halbritter, Jan, Klaus, Günter, Lechner, Felix, Lange-Sperandio, Bärbel, Uetz, Barbara, Benz, Marcus, König, Jens, Staude, Hagen, Wurm, Donald, Bald, Martin, Soliman, Neveen A., Ariceta, Gema, Rodriguez, Juan David Gonzalez, de la Cerda Ojeda, Francisco, Harambat, Jerome, Ranchin, Bruno, Fila, Marc, Dossier, Claire, Boyer, Olivia, Marlais, Matko, UCL - (SLuc) Département de pédiatrie, Ruzgienė, Dovilė, Burgmaier, Kathrin, Kilian, Samuel, Arbeiter, Klaus, Atmis, Bahriye, Buescher, Anja, Derichs, Ute, Dursun, Ismail, Duzova, Ali, Eid, Loai Akram, Galiano, Matthias, Gessner, Michaela, Gokce, Ibrahim, Haeffner, Karsten, Hooman, Nakysa, Jankauskiene, Augustina, Koerber, Friederike, Longo, Germana, Massella, Laura, Mekahli, Djalila, Milosevski-Lomic, Gordana, Nalcacioglu, Hulya, Rus, Rina, Shroff, Rukshana, Stabouli, Stella, Weber, Lutz T., Wygoda, Simone, Yilmaz, Alev, Zachwieja, Katarzyna, Zagozdzon, Ilona, Doetsch, Joerg, Schaefer, Franz, and Liebau, Max Christoph
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Liver Cirrhosis ,Male ,glomerulus filtration rate ,Medizin ,cell surface receptor ,preschool child ,DISEASE ,Cohort Studies ,Chronic kidney disease ,Polycystic kidney disease ,Medicine ,genetics ,Longitudinal Studies ,Child ,pathophysiology ,Ultrasonography ,Kidney ,Multidisciplinary ,longitudinal study ,organ size ,chronic kidney failure ,biological marker ,cohort analysis ,Prognosis ,Autosomal Recessive Polycystic Kidney Disease ,PKHD1 protein, human ,Multidisciplinary Sciences ,medicine.anatomical_structure ,female ,Quartile ,Child, Preschool ,Cohort ,Disease Progression ,Science & Technology - Other Topics ,Glomerular Filtration Rate ,medicine.medical_specialty ,kidney ,Adolescent ,Science ,Urology ,Renal function ,Kidney Volume ,Receptors, Cell Surface ,Article ,Humans ,ddc:610 ,human ,Renal Insufficiency, Chronic ,Polycystic Kidney, Autosomal Recessive ,Paediatric kidney disease ,Science & Technology ,business.industry ,echography ,Infant ,medicine.disease ,mortality ,kidney polycystic disease ,disease exacerbation ,physiology ,business ,metabolism ,Biomarkers ,Kidney disease - Abstract
Autosomal recessive polycystic kidney disease (ARPKD) is characterized by bilateral fibrocystic changes resulting in pronounced kidney enlargement. Impairment of kidney function is highly variable and widely available prognostic markers are urgently needed as a base for clinical decision-making and future clinical trials. In this observational study we analyzed the longitudinal development of sonographic kidney measurements in a cohort of 456 ARPKD patients from the international registry study ARegPKD. We furthermore evaluated correlations of sonomorphometric findings and functional kidney disease with the aim to describe the natural disease course and to identify potential prognostic markers. Kidney pole-to-pole (PTP) length and estimated total kidney volume (eTKV) increase with growth throughout childhood and adolescence despite individual variability. Height-adjusted PTP length decreases over time, but such a trend cannot be seen for height-adjusted eTKV (haeTKV) where we even observed a slight mean linear increase of 4.5 ml/m per year during childhood and adolescence for the overall cohort. Patients with two null PKHD1 variants had larger first documented haeTKV values than children with missense variants (median (IQR) haeTKV 793 (450–1098) ml/m in Null/null, 403 (260–538) ml/m in Null/mis, 230 (169–357) ml/m in Mis/mis). In the overall cohort, estimated glomerular filtration rate decreases with increasing haeTKV (median (IQR) haeTKV 210 (150–267) ml/m in CKD stage 1, 472 (266–880) ml/m in stage 5 without kidney replacement therapy). Strikingly, there is a clear correlation between haeTKV in the first eighteen months of life and kidney survival in childhood and adolescence with ten-year kidney survival rates ranging from 20% in patients of the highest to 94% in the lowest quartile. Early childhood haeTKV may become an easily obtainable prognostic marker of kidney disease in ARPKD, e.g. for the identification of patients for clinical studies. © 2021, The Author(s)., ESPN 2014.2; PKD Foundation, PKDF; Bundesministerium für Bildung und Forschung, BMBF: 01GM1515, 01GM1903; Universität zu Köln, UoC; Marga und Walter Boll-Stiftung; Universitätsklinikum Köln, We thank the German Society for Pediatric Nephrology (GPN), the ESCAPE Network, and the European Society for Paediatric Nephrology (ESPN; Working Groups CAKUT and Inherited Renal Diseases) for their support. ML was supported by grants of the GPN, ESPN (Grant ESPN 2014.2), and the German PKD foundation. KB and ML were supported by the Medical Faculty of the University of Cologne (Koeln Fortune program), and the Marga and Walter Boll-Foundation. FS and ML are supported by the German Federal Ministry of Research and Education (BMBF grant 01GM1515 and 01GM1903). This work was generated within the European Reference Network for Rare Kidney Disorders (ERKNet).
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- 2021
209. Endogenous Oxytocin Levels in Autism-A Meta-Analysis
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Nicky Daniels, Jean Steyaert, Kaat Alaerts, Bart Boets, Lyssa de Vries, Matthijs Moerkerke, and Mathieu Peeters
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medicine.medical_specialty ,Mediation (statistics) ,business.industry ,General Neuroscience ,Neurosciences. Biological psychiatry. Neuropsychiatry ,autism spectrum disorder ,medicine.disease ,biological marker ,Social relation ,endogenous oxytocin ,Endocrinology ,Prosocial behavior ,Oxytocin ,Autism spectrum disorder ,Internal medicine ,Meta-analysis ,medicine ,Autism ,Systematic Review ,business ,Neurotypical ,medicine.drug ,RC321-571 - Abstract
Oxytocin (OT) circuitry plays a major role in the mediation of prosocial behavior. Individuals with autism spectrum disorder (ASD) are characterized by impairments in social interaction and communication and have been suggested to display deficiencies in central OT mechanisms. The current preregistered meta-analysis evaluated potential group differences in endogenous OT levels between individuals with ASD and neurotypical (NT) controls. We included 18 studies comprising a total of 1422 participants. We found that endogenous OT levels are lower in children with ASD as compared to NT controls (n = 1123; g = -0.60; p = 0.006), but this effect seems to disappear in adolescent (n = 152; g = -0.20; p = 0.53) and adult populations (n = 147; g = 0.27; p = 0.45). Secondly, while no significant subgroup differences were found in regard to sex, the group difference in OT levels of individuals with versus without ASD seems to be only present in the studies with male participants (n = 814; g = -0.44; p = 0.08) and not female participants (n = 192; g = 0.11; p = 0.47). More research that employs more homogeneous methods is necessary to investigate potential developmental changes in endogenous OT levels, both in typical and atypical development, and to explore the possible use of OT level measurement as a diagnostic marker of ASD. ispartof: BRAIN SCIENCES vol:11 issue:11 ispartof: location:Switzerland status: published
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- 2021
210. High Expression of SLC16A1 as a Biomarker to Predict Poor Prognosis of Urological Cancers
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Chang-Geng Xu, Zhi-Shun Wang, Hao Shen, Ling Zhang, Yong-Lian Guo, and Zheng-Shuai Song
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Cancer Research ,Mutation ,Epigenetic Process ,Proportional hazards model ,business.industry ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,Cell cycle ,Gene mutation ,biological marker ,medicine.disease ,medicine.disease_cause ,Metastasis ,cancer in urology ,Oncology ,medicine ,Cancer research ,SLC16A1 ,Biomarker (medicine) ,generic cancer ,prognosis ,Signal transduction ,business ,RC254-282 ,Original Research - Abstract
ObjectiveTumor metabolism has always been the focus of cancer research. SLC16A1, as a key factor in catalysis of monocarboxylate transport across the plasma membrane, has been found to be associated with the occurrence and metastasis of a variety of cancers, but its prognostic significance and mechanism in different tumors are still unclear.MethodsBased on the gene expression matrix and clinical information of human cancer tissues acquired from TCGA and GTEX databases, the differential expression of SLC16A1 in different tumors and normal tissues was analyzed. To confirm the association between its expression, the mutation of MMRS gene, and the expression level of DNMTs. Univariate Cox regression was applied to analyze the association between SLC16A1 expression and patient prognosis. The effect of SLC16A1 expression on patient survival was examined by Kaplan Meier analysis. GSEA was used to identify related signaling pathways.ResultsThe expression of SLC16A1 was differentially expressed in most tumors, especially in the urinary tract where it is commonly highly expressed, and differential expression of SLC16A1 in different clinical stages. SLC16A1 expression was significantly positively correlated with MMRS gene mutation and DNMTS expression. Moreover, high SLC16A1 expression was associated with poorer overall survival (OS) and progression-free survival (PFS) in urological cancers. In particular, the results of the enrichment analysis showed that SLC16A1 was associated with processes such as cell adhesion and many signaling pathways affecting cell cycle were significantly enriched in the group with high-expressed SLC16A1.ConclusionSLC16A1 expression was upregulated in urological cancer. SLC16A1 may promote tumor development by regulating the epigenetic process of urological cancer and demonstrated a great potential as a prognostic biomarker of urological cancer patients.
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- 2021
211. Differences and similarities of multisystem inflammatory syndrome in children, Kawasaki disease and macrophage activating syndrome due to systemic juvenile idiopathic arthritis: a comparative study
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Ali Baykan, Sibel Laçinel Gürlevik, Esra Bağlan, Deniz Gezgin Yıldırım, Canan Hasbal Akkuş, T. Coşkuner, Yelda Bilginer, Semanur Özdel, Fatma Gül Demirkan, Sezgin Sahin, Mehmet Yildiz, Kenan Barut, Fatih Haslak, Vildan Atasayan, Muserref Kasap Cuceoglu, Burcu Bozkaya Yücel, Tevfik Karagöz, Ozgur Kasapcopur, Dolunay Gürses, Tuğba Erat, Zeynep Balık, Figen Çakmak, Şengül Çağlayan, Nuray Aktay Ayaz, Yasemin Ozsurekci, Benhur Şirvan Çetin, Şerife Gül Karadağ, Ayşenur Paç Kısaarslan, Gülçin Otar Yener, Ferhat Demir, Özlem Aydoğ, Seza Ozen, Betül Sözeri, Amra Adrovic, Selçuk Yüksel, Murat Çiftel, Özge Başaran, Kadir Ulu, Erdal Atalay, Mustafa Çakan, Ayşe Tanatar, Hafize Emine Sönmez, Kubra Ozturk, Gülşah Kavrul Kayaalp, Özlem Akgün, and Münevver Yılmaz
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myalgia ,leukocyte count ,Lymphocyte ,Arthritis ,Observational Research ,Gastroenterology ,law.invention ,aspartate aminotransferase ,law ,Systemic juvenile idiopathic arthritis ,Immunology and Allergy ,Platelet ,League ,Child ,Macrophage Activation Syndrome ,Multisystem inflammatory syndrome in children (MIS-C) ,Heart ,Shock ,biological marker ,Classification ,Intensive care unit ,Systemic Inflammatory Response Syndrome ,medicine.anatomical_structure ,female ,Macrophage activation syndrome ,Kawasaki disease (KD) ,D dimer ,medicine.symptom ,Covid-19 ,hospitalization ,musculoskeletal diseases ,medicine.medical_specialty ,alanine aminotransferase ,Immunology ,complication ,macrophage ,Mucocutaneous Lymph Node Syndrome ,brain natriuretic peptide ,Article ,Rheumatology ,male ,Internal medicine ,juvenile rheumatoid arthritis ,medicine ,Humans ,controlled study ,human ,lymphocyte count ,business.industry ,human cell ,neutrophil count ,Macrophages ,ferritin ,COVID-19 ,hemoglobin ,platelet count ,medicine.disease ,major clinical study ,Arthritis, Juvenile ,ferritin blood level ,thrombocyte ,inflammation ,Ferritins ,Kawasaki disease ,business ,Biomarkers - Abstract
To compare the clinical and laboratory findings of multisystem inflammatory syndrome in children (MIS-C), patients with Kawasaki disease (KD) and with macrophage activating syndrome due to systemic juvenile idiopathic arthritis (sJIA-MAS) on real-life data. Patients diagnosed with MIS-C, KD, and sJIA-MAS from 12 different centers in Turkey who were followed for at least 6 months were included in the study. Demographic, clinical, and laboratory findings of all patients were analyzed. A total of 154 MIS-C, 59 KD, and 31 sJIA-MAS patients were included. The median age of patients with MIS-C were higher than those with KD while lower than those with sJIA-MAS (8.2, 3, 12 years, respectively). Myalgia (39.6%), cardiac (50.6%), gastrointestinal (72.7%), and neurological (22.1%) involvements were more common in patients with MIS-C compared to others. MIS-C patients had lower levels of lymphocyte (950 vs 1700 cells/µl) and thrombocyte (173,000 vs 355,000 cells/µl) counts and higher pro-BNP (1108 vs 55 pg/ml) levels than KD. Ferritin levels were higher in patients with MIS-C compared to patients with KD while they were lower than patients with sJIA-MAS (440, 170, 10,442 ng/ml, respectively). Patients with MIS-C had a shorter duration of hospitalization than sJIA-MAS (p = 0.02) while they required intensive care unit admission more frequently (55 vs 8 patients, p < 0.001). The median MAS/sJIA score of MIS-C patients was ? 1.64 (? 5.23 to 9.68) and the median MAS/sJIA score of sJIA-MAS patients was ?2.81 ([? 3.79] to [? 1.27]). MIS-C patients displayed certain differences in clinical and laboratory features when compared to KD and sJIA-MAS. Definition of the differences and similarities between MIS-C and the other intense inflammatory syndromes of childhood such as KD and MAS will help the clinicians while making timely diagnosis. © 2021, The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature.
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- 2021
212. Passive exposure to electronic cigarette aerosol in pregnancy: A case study of a family.
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Ballbè, Montse, Fu, Marcela, Masana, Guillem, Pérez-Ortuño, Raúl, Gual, Antoni, Gil, Fernando, Olmedo, Pablo, García-Algar, Óscar, Pascual, Jose Antonio, and Fernández, Esteve
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ELECTRONIC cigarettes , *NITROSOAMINES , *NICOTINE , *BREAST milk , *AEROSOLS , *PREGNANCY , *POLLUTANTS , *CORD blood , *URINE - Abstract
Passive exposure to the aerosols of electronic cigarettes (e-cigarettes) has been little studied. We assessed this exposure in late pregnancy in a woman and her 3-year-old child, exposed through e-cigarette use by another household member. This prospective longitudinal case study involved a family unit consisting of an e-cigarette user, a pregnant woman who delivered an infant during the study, and the couple's older 3-year-old son. At 31, 36, and 40 weeks of the pregnancy, we measured biomarkers (nicotine metabolites, tobacco-specific nitrosamines, propanediols, glycerol, and metals) in the urine and hair of all three participants and in the saliva of the adults, in cord blood at delivery, and in the breast milk at the postpartum period. Samples from the e-cigarette user showed quantifiable concentrations of all analytes assessed (maximum urinary cotinine concentration, 4.9 ng/mL). Among samples taken from the mother, nicotine and its metabolites were found mainly in urine and also in saliva and hair, but not in cord blood. During the postpartum period, we found cotinine concentrations of 2.2 ng/mL in the mother's urine and 0.22 ng/mL in breast milk; 1,2-propanediol was generally detected in urine and saliva, but not in cord blood or breast milk. The maximum urinary cotinine concentration in the 3-year-old child was 2.6 ng/mL and propanediols also were detected in his urine. Nitrosamines were not detected in samples taken from the mother or the 3-year-old. Metals found in the refill liquid were detected at low levels in both the mother and the 3-year-old. We detected low but not negligible concentrations of e-cigarette–related analytes (including cord blood and breast milk) in an exposed pregnant non-user and in a 3-year-old child also living in the home. Passive exposure to e-cigarette aerosols cannot be disregarded and should be assessed in larger observational studies. • No studies exist on passive exposure to e-cigarettes during pregnancy and childhood. • We detected e-cigarette pollutants in both the pregnant woman and the child. • The only pollutants we found in breast milk were nicotine metabolites. • Neither nicotine metabolites nor any other pollutants were detected in cord blood. • Passive exposure is not irrelevant in the pregnant woman, child, or newborn. [ABSTRACT FROM AUTHOR]
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- 2023
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213. Predicting acute severe toxicity for head and neck squamous cell carcinomas by combining dosimetry with a radiosensitivity biomarker: a pilot study.
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Deneuve S, Bastogne T, Duclos M, Mirjolet C, Bois P, Bachmann P, Nokovitch L, Roux PE, Girodet D, Poupart M, Zrounba P, Claude L, Ferella L, Iacovelli NA, Foray N, Rancati T, and Pereira S
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- Humans, Squamous Cell Carcinoma of Head and Neck radiotherapy, Pilot Projects, Prospective Studies, Dysprosium, Radiotherapy Dosage, Radiation Tolerance genetics, Biomarkers, Probability, Mucositis, Head and Neck Neoplasms radiotherapy, Head and Neck Neoplasms complications, Deglutition Disorders etiology
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Objective: Radiotherapy (RT) against head and neck squamous cell carcinomas (HNSCC) may lead to severe toxicity in 30-40% of patients. The normal tissue complication probability (NTCP) models, based on dosimetric data refined the normal tissue dose/volume tolerance guidelines. In parallel, the radiation-induced nucleoshuttling (RIANS) of the Ataxia-Telangiectasia Mutated protein (pATM) is a predictive approach of individual intrinsic radiosensitivity. Here, we combined NTCP with RADIODTECT©, a blood assay derived from the RIANS model, to predict RT toxicity in HNSCC patients., Methods: RADIODTECT© cutoff values (i.e. 57.8 ng/mL for grade⩾2 toxicity and 46 ng/mL for grade⩾3 toxicity) have been previously assessed. Validation was performed on a prospective cohort of 36 HNSCC patients treated with postoperative RT. Toxicity was graded with the Common Terminology Criteria for Adverse Events (CTCAE) scale and two criteria were considered: grade⩾2 oral mucositis (OM2), grade⩾3 mucositis (OM3) and grade⩾2 dysphagia (DY2), grade⩾3 dysphagia (DY3). pATM quantification was assessed in lymphocytes of HNSCC patients. The discrimination power of the pATM assay was evaluated through the Area Under the Receiver Operator Characteristics Curve (AUC-ROC). Two previously described NTCP models were considered, including the dose to the oral cavity and the mean dose to the parotid glands (OM2 and OM3) and the dose to the oral cavity, to the larynx and the volume of pharyngeal constrictor muscles (DY2 and DY3)., Results: Combining NTCP models with RADIODTECT© blood test improved the AUC-ROC. Considering the prediction of mucositis, AUC-ROC
NTCP+RADIODTECT© =0.80 was for OM2, and AUC-ROCNTCP+RADIODTECT© =0.78 for OM3. Considering the prediction of acute dysphagia, AUC-ROCNTCP+RADIODTECT© =0.71 for DY2 and for DY3., Conclusions: Combining NTCP models with a radiosensitivity biomarker might significantly improve the prediction of toxicities for HNSCC patients.- Published
- 2023
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214. Identification of exosomal biomarkers and its optimal isolation and detection method for the diagnosis of Parkinson's disease: A systematic review and meta-analysis.
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Nila, Irin Sultana, Sumsuzzman, Dewan Md., Khan, Zeeshan Ahmad, Jung, Jin Ho, Kazema, Ashura Suleiman, Kim, Sang Jin, and Hong, Yonggeun
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PARKINSON'S disease , *EXOSOMES , *DIAGNOSIS methods , *DEEP brain stimulation , *CENTRAL nervous system , *ALPHA-synuclein - Abstract
Recently, there has been growing interest in exosomal biomarkers for their active targeting and specificity for delivering their cargos (proteins, lipids, nucleic acids) from the parent cell to the recipient cell. Currently, the clinical diagnosis of Parkinson's disease (PD) is mainly based on a clinician's neuropsychological examination and motor symptoms (e.g., bradykinesia, rigidity, postural instability, and resting tremor). However, this diagnosis method is not accurate due to overlapping criteria of other neurodegenerative diseases. Exosomes are differentially expressed in PD and a combination of types and contents of exosomes might be used as a biomarker in PD. Here, we systematically reviewed and meta-analyzed exosomal contents, types and sources of exosomes, method of isolation, and protein quantification tools to determine the optimum exosome-related attributes for PD diagnosis. Pubmed, Embase, and ISI Web of Science were searched for relevant studies. 25 studies were included in the meta-analysis. The Ratio of Mean (RoM) with 95% confidence intervals (CI) was calculated to estimate the effect size. Biomarker performances were rated by random-effects meta-analysis with the Restricted Maximum Likelihood (REML) method. The study protocol is available at PROSPERO (CRD42022331885). Exosomal α-synuclein (α-Syn) was significantly altered in PD patients from healthy controls [RoM = 1.67, 95% CI (0.99 to 2.35); p = 0.00] followed by tau [RoM = 1.33, 95% CI (0.79 to 1.87); p = 0.00], PS-129 [RoM = 0.97, 95% CI (0.54 to 1.40); p = 0.00], and DJ-1/PARK7 [RoM = 0.93, 95% CI (0.64 to 1.21); p = 0.00]. Central nervous system derived L1CAM exosome [RoM = 1.24, 95% CI (1.04 to 1.45); p = 0.00] from either plasma [RoM = 1.35, 95% CI (1.09 to 1.61); p = 0.00]; or serum [RoM = 1.47, 95% CI (1.05 to 1.90); p = 0.00] has been found the optimum type of exosome. The exosome isolation by ExoQuick [RoM = 1.16, 95% CI (0.89 to 1.43); p = 0.00] and protein quantification method by ELISA [RoM = 1.28, 95% CI (1.15 to 1.41); p = 0.00] has been found the optimum isolation and quantification method, respectively for PD diagnosis. This meta-analysis suggests that α-Syn in L1CAM exosome derived from blood, isolated by ExoQuick kit, and quantified by ELISA can be used for PD diagnosis. [Display omitted] • A workflow is carved for optimum exosome-based Parkinson's disease (PD) diagnosis. • Blood L1CAM exosomes containing α-synuclein (α-Syn) are the best exosomal biomarker for PD. • ExoQuick kit offers optimum isolation of exosomes for PD diagnosis. • Quantification of α-Syn by ELISA shows the best results for PD diagnosis. [ABSTRACT FROM AUTHOR]
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- 2022
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215. T cell immunoglobulin and mucin domain-containing molecule 3 on CD14+ monocytes serves as a novel biological marker for diabetes duration in type 2 diabetes mellitus.
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Yan, Wen‐jiang, Sun, Peng, Wei, Dan‐dan, Wang, Shuang‐xi, Yang, Jing‐jing, Li, Yi‐hui, and Zhang, Cheng
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TYPE 2 diabetes , *OBESITY , *T cells , *PHYSICAL activity , *IMMUNOGLOBULINS - Abstract
Aims/Introduction Type 2 diabetes is a worldwide disease that is associated with increased rates of obesity and reduced physical activity. Obesity-associated insulin resistance in type 2 diabetes is a disorder in the balance between pro-inflammatory and anti-inflammatory signals. T cell immunoglobulin and mucin domain-containing molecule 3 (Tim-3) has been reported as an important regulatory inflammation molecule, and plays a pivotal role in several inflammation-related diseases. Materials and Methods Peripheral blood mononuclear cells were obtained from type 2 diabetes patients ( n = 31) and healthy donors ( n = 18), and Tim-3 expression on peripheral blood mononuclear cells was evaluated by flow cytometry. Results We showed the downregulated expression of Tim-3 on CD14+ monocytes from type 2 diabetes patients. In addition, the upregulated expression of Tim-3 on peripheral CD4+ T cells and CD8+ T cells was observed in the present study. The correlation analysis between Tim-3 expression on CD14+ monocytes and diabetes duration showed the longer diabetes duration time, the lower Tim-3 expression on CD14 monocytes. Conclusions The present results suggest that Tim-3 might participate in the progression of type 2 diabetes by its negative regulation on these immune cells, and Tim-3 on CD14+ monocytes serves as a novel biological marker for diabetes duration in type 2 diabetes patients. [ABSTRACT FROM AUTHOR]
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- 2016
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216. Retinal proteome changes following experimental branch retinal vein occlusion and intervention with ranibizumab.
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Cehofski, Lasse Jørgensen, Kruse, Anders, Bøgsted, Martin, Magnusdottir, Sigriður Olga, Stensballe, Allan, Honoré, Bent, and Vorum, Henrik
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RETINAL proteins , *RETINAL vein occlusion , *PROTEOMICS , *RANIBIZUMAB , *EXTRACELLULAR matrix , *VASCULAR endothelial growth factors - Abstract
Animal models of experimental branch retinal vein occlusion (BRVO) provide a unique opportunity to study protein changes directly in retinal tissue. Results from these experimental models suggest that experimental BRVO is associated with an upregulation of extracellular matrix remodeling and adhesion signaling processes. To study whether these processes could be blocked by inhibition of VEGF-A, a porcine model of experimental BRVO was combined with proteomic analyses. In six Danish Landrace pigs experimental BRVO was induced with argon laser in both eyes. After 24 h an injection of 0.05 mL ranibizumab was given in the right eyes of the animals while left eyes received an injection of 0.05 mL 9 mg/mL sodium chloride water. Retinas were dissected three days after BRVO and the retinal samples were analyzed with label-free quantification as well as tandem mass tag based proteomics. In retinas treated with ranibizumab five proteins exhibited statistically significant changes in content with both proteomic techniques. These five proteins, which were all decreased in content, included integrin β-1, peroxisomal 3-ketoacyl-CoA thiolase, OCIA domain-containing protein 1, calnexin and 40S ribosomal protein S5. As anti-integrin therapies are under development for inhibition of angiogenesis in retinal diseases it is interesting that inhibition of VEGF-A in itself resulted in a small decrease in the content of integrin β-1. The decreased content of integrin β-1 indicates that extracellular matrix remodeling and adhesion processes associated with BRVO are at least partly reversed through inhibition of VEGF-A. [ABSTRACT FROM AUTHOR]
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- 2016
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217. Early Predictors of Acute Kidney Injury: A Narrative Review.
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Liu, Xiaoqin, Guan, Yi, Xu, Sheng, Li, Qingzhao, Sun, Yuanbo, Han, Ruijie, and Jiang, Chunyang
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ACUTE kidney failure , *KIDNEY disease diagnosis , *CHRONIC disease treatment , *GLOMERULAR filtration rate , *BIOMARKERS , *PROGNOSIS - Abstract
Accompanied with the broad application of interventional therapy, the incidence of acute kidney injury (AKI) has been recently increasing in clinical renal medicine. The pathogenesis of AKI is diverse and complex. In the context of the requirements for the diagnosis and treatment of a renal disorder, a large number of studies have explored biological markers and their usefulness to the early diagnosis and treatment of AKI, including glomerular injury, renal tubular injury, and others. These biomarkers provide an important basis for early monitoring of AKI, but are still not quite sufficient. More ideal biomarkers are needed to be identified. Therefore, future studies are necessary to explore more effective biomarkers for AKI clinical practice, which would play an important role in the early diagnosis and intervention treatment of AKI. This review summarizes the important biomarkers identified by previous studies and aims to highlight the advancements that might provide new methods for early clinical diagnosis and effective therapeutic options, along with prediction of response to treatment for AKI. [ABSTRACT FROM AUTHOR]
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- 2016
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218. The Hormonal Fingerprints and BMI: Implications for Risk Factors in Dental Caries and Malocclusion.
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DEEPTHI PRIYANKA, GOGULADINNE NAGA, PRASAD, MADU GHANASHYAM, RADHAKRISHNA, AMBATI NAGA, RAMAKRISHNA, JUVVA, and JYOTHI, VELAGAPUDI
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BIOMARKERS , *MALOCCLUSION , *DISEASE risk factors ,DENTAL caries risk factors - Abstract
Introduction: The hormonal fingerprint is the ratio between 2nd and 4th digit lengths. It was evidenced in the medical scenario that it can be used as an indirect marker in many diseases like Coronary Heart Disease (CHD) and metabolic syndromes. As far as dentistry is concerned very few studies in the literature have been done to evaluate the influence of hormonal fingerprint on oral health, thus provoking us to formulate new method for predicting dental caries and malocclusion and its association with Body Mass Index (BMI). Aim: The purpose of this retrospective study was to highlight the role of new biological marker-Hormonal fingerprints in the early detection of malocclusion, caries, the influence of BMI on malocclusion and caries. We also attempted to study the correlation of BMI with hormonal fingerprints. Materials and Methods: A total of 300 children were randomly selected from both sexes of age group 10-15 years. The hormonal fingerprint was made by measuring the length ratio of the index and ring finger with the help of digital Vernier caliper. Anthropometric measures (weight in kilograms and height in metres) for the calculation of BMI were recorded. Caries assessment was done using standard mouth mirrors and Community Periodontal Index probes. DMFT index was followed for assessment of caries according to the WHO assessment form, 1997. Occlusal characteristics of the children evaluated were molar relation, anterior and posterior cross bite, open bite, deep bite, lower anterior crowding. All the factors were recorded by two investigators. Results: The results of the study showed that majority of the children among study population were having 2D:4D <1. The rate of occurrence of malocclusion was increasing with increase in the value of 2D:4D ratio with a statistically significant p-value of <0.001. Higher BMI values were associated with normal occlusal conditions (p= 0.041) and lower 2D:4D ratio (p= 0.037). High caries experience was noticed in children with malocclusion (p= 0.027) which further influences the caries susceptibility. Pearson's correlation test, t-test and ANOVA were used in the study for statistical analysis using SPSS software. Conclusion: This study confirms the impact of hormones on incidence of malocclusion, BMI which in turn influences the caries index and could be used as an early predictor. [ABSTRACT FROM AUTHOR]
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- 2016
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219. CMAP decrement as a potential diagnostic marker for ALS.
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Mori, A., Yamashita, S., Nakajima, M., Hori, H., Tawara, A., Matsuo, Y., Misumi, Y., and Ando, Y.
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AMYOTROPHIC lateral sclerosis , *ACTION potentials , *NEURAL stimulation , *BIOMARKERS , *PATHOLOGICAL physiology , *DIAGNOSIS - Abstract
Objective We previously reported that decrement of compound muscle action potential (CMAP) by repetitive nerve stimulation (RNS) was greater in the median nerves than in the ulnar nerves of patients with amyotrophic lateral sclerosis (ALS). The aim of this study was to evaluate whether CMAP decrement by RNS is a feasible marker for the differentiation of ALS from other diseases. Materials & methods We performed RNS in the median and ulnar nerves of 51 patients with ALS and 40 patients with other diseases. Results The CMAP decrement was significantly greater in the median nerves of patients with ALS, compared to the disease control patients. In the median nerves of patients with ALS, CMAP decrement was significantly greater in the cervical region-onset group than in the other region-onset group. Conclusions The finding of CMAP decrement in the median nerves can be useful for differentiating ALS patients with cervical region onset from other controls with active neuropathic diseases. [ABSTRACT FROM AUTHOR]
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- 2016
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220. Serum homocysteine is associated with the severity of primary chronic venous disease.
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Smith, Ross K., Quigley, Frank, Tosenovsky, Patrik, Velu, Ramesh, Bradshaw, Barbara, Buettner, Petra, and Golledge, Jonathan
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Objective This study was conducted to assess whether serum homocysteine concentration was associated with the severity of primary chronic venous disease. Design Cross-sectional study. Methods A total of 282 primary chronic venous disease patients were enrolled from outpatient vascular services. The severity of venous disease was graded using the Clinical Etiology Anatomy Pathophysiology classification system. The association of serum homocysteine concentration with advanced primary chronic venous disease (C4-6) was assessed using the Mann Whitney U test and logistic regression analysis. Results Median (interquartile range) serum homocysteine concentrations were 9.10 µM (7.55–10.75) and 10.40 µM (8.85–13.10) in patients with primary chronic venous disease classified by C1-3 (n = 209) and C4-6 (n = 73) grades, respectively, p < 0.001. Serum homocysteine concentration was positively associated with clinical grade 4–6 after adjusting for other risk factors including age, diabetes, male sex, hypertension, recurrent varicose veins and stroke. Patients with serum homocysteine in the third (odds ratio, 2.76, 95% confidence interval, 1.01–7.54) and fourth (odds ratio 3.29, 95% confidence interval 1.15–9.43) quartiles were more likely to have grade C4-6 chronic venous disease than subjects with serum homocysteine in the first quartile. Conclusions Serum homocysteine is positively associated with the severity of primary chronic venous disease and therefore could play a role in promoting chronic venous disease complications. [ABSTRACT FROM AUTHOR]
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- 2016
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221. MicroRNA-29a Is a Candidate Biomarker for Alzheimer's Disease in Cell-Free Cerebrospinal Fluid.
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Müller, Mareike, Jäkel, Lieke, Bruinsma, Ilona, Claassen, Jurgen, Kuiperij, H., and Verbeek, Marcel
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The identification of reliable biomarkers for Alzheimer's disease (AD) remains challenging. Recently, abnormal levels of microRNAs (miRNAs) miR-27a, miR-29a, miR-29b, and miR-125b in cerebrospinal fluid (CSF) of AD patients were reported. We aimed to confirm the biomarker potential of these miRNAs for AD diagnosis. Additionally, we examined the influence of blood contamination on CSF miRNA levels as potential confounding factor. We studied expression levels of the four miRNAs by quantitative PCR in CSF samples of AD patients and non-demented controls, and in blood-spiked CSF. Levels of miR-29a, but not of the other three miRNAs, were increased by a factor of 2.2 in CSF of AD patients. Spiking of small amounts of blood into CSF revealed that miR-27a and miR-29a, but not miR-125b levels were strongly influenced by the number of blood cells in the sample. In conclusion, miR-29a may be a candidate biomarker for AD, but only when used in cell-free CSF. [ABSTRACT FROM AUTHOR]
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- 2016
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222. The role of microRNA in myelodysplastic syndromes: beyond DNA methylation and histone modification.
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Milunović, Vibor, Mandac Rogulj, Inga, Planinc‐Peraica, Ana, Bulycheva, Ekaterina, and Kolonić Ostojić, Slobodanka
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MYELODYSPLASTIC syndromes , *MICRORNA , *DNA methylation , *HISTONES , *BLOOD diseases , *BIOMARKERS - Abstract
Myelodysplastic syndromes (MDS) are heterogeneous group of hematologic disorders of mostly elderly and based on distinct clinical phenotypes. Current paradigm of their pathogenesis relies on somatic gene mutations combined with the predisposing defective osteohematopoietic niche, but due to the breakout in epigenetic research scientific focus has steered toward two most common epigenetic modifications: methylation mechanisms and histone modification. At the same time, relatively few studies have been undertaken regarding the third epigenetic pathway - microRNAs - in MDS. The main aim of this review is to provide the basics of microRNA biology and function in oncogenesis, showing the complexity of mechanisms behind this single-stranded 22 nucleotides long RNA molecule, with further focus on its implication in MDS pathology and clinical context. By extensive literature search, we have shown enough evidence for their deregulation in MDS. However, few studies have addressed the issue on pathogenic events in MDS and its association with specific microRNAs. Preliminary research in clinical setting has shown the possible utility of microRNAs in terms of prognosis and therapy, although we are only beginning to understand various implications of microRNAs in MDS and further extensive research is warranted to answer multiple questions arising from interconnection of this epigenetic mechanism in MDS. [ABSTRACT FROM AUTHOR]
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- 2016
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223. Neuron-specific enolase levels in drug-naïve young adults with major depressive disorder.
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Wiener, Carolina David, Molina, Mariane Lopez, Passos, Miguel, Moreira, Fernanda Pedrotti, Bittencourt, Guilherme, de Mattos Souza, Luciano Dias, da Silva, Ricardo Azevedo, Jansen, Karen, and Oses, Jean Pierre
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DIAGNOSIS of mental depression , *MENTAL health of young adults , *ENOLASE , *BLOOD serum analysis , *ELECTROCHEMILUMINESCENCE , *NEURONS - Abstract
The aim of this study is to assess neuron-specific enolase (NSE) levels and clinical features in subjects with major depressive disorder (MDD). This is a cross-sectional study with drug-naïve young adults with MDD (aged 18–29 years). Serum levels of NSE were assessed using the electrochemiluminescence method. MDD diagnosis, suicidal ideation, and time of disease were assessed using the Structured Clinical Interview for DSM-IV (SCID). The Hamilton Depression Rating Scale (HDRS) and Hamilton Anxiety Rating Scale (HARS) were used to assess depressive and anxiety symptoms. No relationship was observed between NSE levels and severity of depressive and anxiety symptoms, time of disease, and suicidal ideation. These results suggest that NSE serum levels were not associated with clinical features of MDD among drug-naïve young adults. [ABSTRACT FROM AUTHOR]
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- 2016
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224. Adenosine deaminase is a useful biomarker to diagnose pleural tuberculosis in low to medium prevalence settings.
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Michot, Jean-Marie, Madec, Yoann, Bulifon, Sophie, Thorette-Tcherniak, Cécile, Fortineau, Nicolas, Noël, Nicolas, Lambotte, Olivier, El Jahiri, Younes, Delacour, Hervé, Delfraissy, Jean-François, and Blanc, François-Xavier
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ADENOSINE deaminase , *TUBERCULOSIS diagnosis , *PLEURAL effusions , *BIOMARKERS , *DISEASE prevalence , *ETIOLOGY of diseases , *DIAGNOSIS , *THERAPEUTICS - Abstract
Adenosine deaminase (ADA) activity measurement in pleural fluid is a relevant test to diagnose pleural tuberculosis (pTB) in high tuberculosis prevalence settings. We investigated the diagnostic utility of pleural ADA using a retrospective analysis of patients admitted with newly diagnosed pleural effusion without identified etiology between 2001 and 2008 in Paris suburb, a low to medium tuberculosis prevalence area. 104 adults (mean age 55 years; 34 with pTB, 70 with other diagnoses) were analyzed. Median follow-up was 15.6 months. Mean [interquartile range] pleural ADA was 119 U/L [IQR: 83–143] in pTB and 24 U/L [IQR: 15–31] in non-tuberculous effusions ( P < 0.001). With an optimal pleural ADA cut-off value of 41.5 U/L for pTB diagnosis, sensitivity and specificity were 97.1% and 92.9%, while positive and negative predictive values were 86.8% and 98.5%, respectively. We conclude that pleural ADA activity could be integrated in the diagnostic procedures of pTB in low to medium tuberculosis prevalence settings. [ABSTRACT FROM AUTHOR]
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- 2016
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225. Neutrophil CD64 level as a rapid and promising diagnostic tool for infectious diseases in elderly patients.
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Otsuki, Nozomi, Tsutani, Hiroshi, Matsui, Toshihiro, Iwasaki, Hiromichi, and Ueda, Takanori
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COMMUNICABLE disease diagnosis , *HOSPITAL care of older people , *FLOW cytometry , *GENE expression , *IMMUNOGLOBULINS , *NEUTROPHILS , *CD4 antigen , *GENETIC markers , *QUANTITATIVE research , *PRE-tests & post-tests , *RETROSPECTIVE studies , *RECEIVER operating characteristic curves - Abstract
Aim We examined the utility of the neutrophil CD64 level as a rapid and sensitive diagnostic marker for infections in febrile aged patients. Methods The expression level of CD64 per neutrophil was quantitatively measured with flow cytometry using a QuantiBrite kit in samples from febrile (aged >65 years) patients. Information about the presence or absence of infectious disease was retrospectively obtained from each patient's medical record in which attending physicians were obliged to write down a tentative diagnosis after resolution of manifestations. Results With receiver operating characteristic curve evaluation using the results, a CD64 level >2000 molecules per neutrophil was sensitive and specific for detecting infection. Among 102 patients suspected of having infection, 72 patients were diagnosed with infectious diseases, and 30 patients had non-infectious diseases. The sensitivity and specificity of determination of the neutrophil CD64 level were 88% and 63%, respectively. However, considering the high frequency of infections in elderly patients (71% in the present study), the post-test probability reached as high as 93%. The positive likelihood ratio was 2.4, and the negative likelihood ratio was 0.2. Conclusions Considering the frequency of infectious diseases in elderly patients, determination of the neutrophil CD64 level helps detect infectious diseases. Geriatr Gerontol Int 2015; ●●: ●●-●●. [ABSTRACT FROM AUTHOR]
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- 2016
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226. Cocaine-induced Psychosis and Brain-derived Neurothrophic Factor in Patients with Cocaine Dependence: Report of Two Cases.
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Roncero, Carlos, Palma-Álvarez, Raul Felipe, Ros-Cucurull, Elena, Barral, Carmen, Gonzalvo, Begoña, Corominas-Roso, Margarida, Casas, Miguel, and Grau-López, Lara
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BRAIN-derived neurotrophic factor , *COCAINE abuse - Abstract
Brain-derived neurotrophic factor (BDNF) is linked to numerous brain functions. In addition, BDNF alterations contribute to neurological, mental, and addictive disorders. Cocaine dependence has received much attention recently due to its prevalence and psychological effects. Symptoms of psychosis are one of the most serious adverse events precipitated by cocaine use. It is particularly important to identify patients at risk of developing cocaine-induced psychosis (CIP). We described two cases of patients with cocaine dependence who presented with CIP and had changes in their BDNF levels during the psychotic episode. BDNF levels were initially low in both patients, and then decreased by more than 50% in association with CIP. The relationship between BDNF and psychosis is described in the literature. These cases revealed that BDNF levels decreased during a CIP episode and, thus, it is necessary to investigate BDNF and its relationship with CIP further. [ABSTRACT FROM AUTHOR]
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- 2016
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227. Wet, volatile, and dry biomarkers of exercise-induced muscle fatigue.
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Finsterer, Josef and Drory, Vivian E.
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EXERCISE physiology , *MUSCLE fatigue , *BIOMARKERS , *OXIDATIVE stress , *DEHYDRATION , *CLINICAL trials , *EXERCISE , *MOTOR ability , *VOLATIZATION , *SKELETAL muscle , *SURFACE properties - Abstract
Background: The physiological background of exercise-induced muscle fatigue(EIMUF) is only poorly understood. Thus, monitoring of EIMUF by a single or multiple biomarkers(BMs) is under debate. After a systematic literature review 91 papers were included.Results: EIMUF is mainly due to depletion of substrates, increased oxidative stress, muscle membrane depolarisation following potassium depletion, muscle hyperthermia, muscle damage, impaired oxygen supply to the muscle, activation of an inflammatory response, or impaired calcium-handling. Dehydration, hyperammonemia, mitochondrial biogenesis, and genetic responses are also discussed. Since EIMUF is dependent on age, sex, degree of fatigue, type, intensity, and duration of exercise, energy supply during exercise, climate, training status (physical fitness), and health status, BMs currently available for monitoring EIMUF have limited reliability. Generally, wet, volatile, and dry BMs are differentiated. Among dry BMs of EIMUF the most promising include power output measures, electrophysiological measures, cardiologic measures, and questionnaires. Among wet BMs of EIMUF those most applicable include markers of ATP-metabolism, of oxidative stress, muscle damage, and inflammation. VO2-kinetics are used as a volatile BM.Conclusions: Though the physiology of EIMUF remains to be fully elucidated, some promising BMs have been recently introduced, which together with other BMs, could be useful in monitoring EIMUF. The combination of biomarkers seems to be more efficient than a single biomarker to monitor EIMUF. However, it is essential that efficacy, reliability, and applicability of each BM candidate is validated in appropriate studies. [ABSTRACT FROM AUTHOR]- Published
- 2016
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228. Principles and Scope of Environmental Medicine
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Tarcher, Alyce Bezman and Tarcher, Alyce Bezman, editor
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- 1992
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229. The preoperative plasma fibrinogen level is an independent prognostic factor for overall survival of breast cancer patients who underwent surgical treatment.
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Wen, Jiahuai, Yang, Yanning, Ye, Feng, Huang, Xiaojia, Li, Shuaijie, Wang, Qiong, and Xie, Xiaoming
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BREAST cancer treatment ,BREAST cancer prognosis ,BREAST cancer surgery ,BREAST cancer patients ,CANCER invasiveness ,FIBRINOGEN - Abstract
Background Previous studies have suggested that plasma fibrinogen contributes to tumor cell proliferation, progression and metastasis. The current study was performed to evaluate the prognostic relevance of preoperative plasma fibrinogen in breast cancer patients. Method Data of 2073 consecutive breast cancer patients, who underwent surgery between January 2002 and December 2008 at the Sun Yat-sen University Cancer Center, were retrospectively evaluated. Plasma fibrinogen levels were routinely measured before surgeries. Participants were grouped by the cutoff value estimated by the receiver operating characteristic (ROC) curve analysis. Overall survival (OS) was assessed using Kaplan–Meier analysis, and multivariate Cox proportional hazards regression model was performed to evaluate the independent prognostic value of plasma fibrinogen level. Results The optimal cutoff value of preoperative plasma fibrinogen was determined to be 2.83 g/L. The Kaplan–Meier analysis showed that patients with high fibrinogen levels had shorter OS than patients with low fibrinogen levels ( p < 0.001). Multivariate analysis suggested preoperative plasma fibrinogen as an independent prognostic factor for OS in breast cancer patients (HR = 1.475, 95% confidence interval (CI): 1.177–1.848, p = 0.001). Subgroup analyses revealed that plasma fibrinogen level was an unfavorable prognostic parameter in stage II–III, Luminal subtypes and triple-negative breast cancer patients. Conclusion Elevated preoperative plasma fibrinogen was independently associated with poor prognosis in breast cancer patients and may serve as a valuable parameter for risk assessment in breast cancer patients. [ABSTRACT FROM AUTHOR]
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- 2015
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230. Plasma cell-free DNA profiling of PI3K/Akt pathway aberrations in two multi-institutional independent metastatic castration-resistant prostate cancer (mCRPC) cohorts.
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Horvath L., Du P., Jia S., Azad A., Kohli M., Kwan E.M., Dai C., Fettke H., Hauser C., Bukczynska P., Ng N., Foroughi S., Graham L.-J.K., Mahon K.L., Tan W., Wang A., Zhao Z., Zheng T., Zhou K., Yu J.-J., Horvath L., Du P., Jia S., Azad A., Kohli M., Kwan E.M., Dai C., Fettke H., Hauser C., Bukczynska P., Ng N., Foroughi S., Graham L.-J.K., Mahon K.L., Tan W., Wang A., Zhao Z., Zheng T., Zhou K., and Yu J.-J.
- Abstract
Background: Tumour tissue from metastatic castration-resistant prostate cancer (mCRPC) harbors frequent copy number variations (CNVs) in the phosphatidylinositol-3-kinase (PI3K)/Aktsignaling pathway. However, identifying CNVs in plasma cell-free DNA (cfDNA) has proven challenging. With emerging data supporting Akt inhibition in PTEN-deficient mCRPC, cfDNA assays for robustly identifying PI3K/Akt pathway aberrations including CNVs are urgently required. Method(s): In this multi-institutional prospective biomarker study, we used the Predicine cfDNA assay, optimised for CNV detection, to perform targeted sequencing in 231 mCRPC patients in two independent cohorts (Australian, n = 78; US, n = 153). Kaplan-Meier survival estimates and multivariable Cox regression analysis were used to assess associations between genomic aberrations and progression-free survival (PFS) and overall survival (OS). Result(s): PTEN loss and PIK3CAgain were detected in 37% (85/231) and 17% (39/231) of patients, respectively. Poorer outcomes were observed in patients with PI3K/Akt pathway aberrations, including those with dual PTEN loss and PIK3CA gain (HR 2.3, 95% CI 1.2-4.4). Similarly, cumulative CNV burden in the PI3K/Akt and AR pathways (0 vs 1 vs >=2 CNVs in Australian cohort: median OS 33.5 vs 17.2 vs 9.7 months, p< 0.001; 0 vs 1 vs >=2 CNVs in US cohort: median OS 35.5 vs 14.3 vs 9.2 months, p< 0.001) was associated with significantly worse clinical outcomes. Notably, 21% (31/146) of PTEN-neutral patients harbored other alterations in the PI3K/Akt pathway. Conclusion(s): Our cfDNA assay readily detected PI3K/Akt pathway CNVs, with the prevalence of PTEN loss comparable to prior tissue sequencing studies. CNVs in the PI3K/Akt pathway were associated with deleterious clinical outcomes, especially when concurrent with AR gain. Additional PI3K/Akt pathway aberrations were found in approximately one-fifth of PTEN-neutral mCRPC. Collectively, our data demonstrate the potential utility of profi
- Published
- 2021
231. Biomarkers of Asthma Relapse and Lung Function Decline in Adults with Remitted Asthma: A Population-Based Cohort Study.
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Abramson M., Tang M., Walters H., Dharmage S., Perret J., Tan D., Lodge C., Lowe A., Aldakheel F., Bui D., Johns D., Hamilton G., Thomas P., Abramson M., Tang M., Walters H., Dharmage S., Perret J., Tan D., Lodge C., Lowe A., Aldakheel F., Bui D., Johns D., Hamilton G., and Thomas P.
- Abstract
Introduction. Whether systemic and airway inflammation persist in remitted asthma and whether such inflammation is associated with adverse long-term respiratory outcomes remains unclear. Objective. To determine the prevalence of systemic and airway inflammation in adults with remitted asthma, and to examine their associations with asthma relapse and lung function decline. Methods. The Tasmanian Longitudinal Health Study (TAHS) is a population-based cohort first studied in 1968 (n = 8,583). In 2004 (age 44), biomarkers of systemic inflammation (serum IL-4, IL-5, IL-6, IL-8, IL10, TNF-) were measured in a subgroup (n = 1,389) and categorised into cytokine profiles using latent profile analysis (LPA). In 2010 (age 50), markers of airway inflammation, methacholine challenge tests (n = 836) and total nitric oxide products in exhaled breath condensate (EBC NOx), were measured. Asthma relapse and lung function decline were assessed at follow-up in 2014. Multivariable linear and Poisson regression were used to examine relevant associations. Results. Of adults with remitted asthma at age 50 years, 20.8% [95% CI 15.9, 26.7] had bronchial hyperresponsiveness (BHR) and 7.1% [95% CI 4.2 ,11.9] had an elevated EBC NOx (>5.05 mumol/L). Asthma relapse was associated with BHR (RR 2.25 [95%CI 1.52, 3.32]), but not with elevated EBC NOx. Three distinct cytokine profiles were identified via LPA: A reference anormala cytokine profile, a aTh2-higha profile associated with accelerated post-BD FEV1/FVC decline (MD-0.18% predicted/year [-0.33,-0.02]), and a aTh2-lowa profile associated with accelerated postBD FEV1 (MD-0.41% predicted/year [-0.75,-0.06]) and post-BD FVC decline (MD-0.31% predicted/year [-0.62, 0.01]). Conclusion. BHR and elevated biomarkers of asthma activity have prognostic value in adults with remitted asthma. At-risk individuals may benefit from closer follow-up, repeat spirometry and potentially antiinflammatory agents.
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- 2021
232. Fourier-transform infrared spectroscopy and machine learning algorithms can accurately classify and predict colitis and its severity.
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Moore G., Wood B., Lim R., Sievert W., Keung C., Heraud P., Moore G., Wood B., Lim R., Sievert W., Keung C., and Heraud P.
- Abstract
Background and Aim: Diagnosis and management of inflammatory bowel disease (IBD) requires a clinical approach, combining information from histology and other modalities for clinical decision making. However, histology is costly due to specimen processing, and intra- and interobservational variation and the significance of subtle findings remain unclear when translating into clinical practice. Biospectroscopy involves combining microscopy with spectroscopy and provides chemical and imaging identification for complex biological specimens, which, as an advantage, do not require any chemical processing techniques or staining. Briefly, infrared (IR) or laser energies vibrate biochemical bonds in biospecimens (fluids or tissue), which are then recorded as absorbance intensities in large hyperspectral datasets. Regression and classification algorithms used in multivariate analysis for machine learning are then applied for modeling and predictive capacity. To date, there has been little published research using this technology for assessing IBD. We aimed to undertake an explorative analysis of intestinal inflammation using Fourier-transform infrared microspectroscopy, develop a model for assessing severity of colitis, and identify potential spectral biomarkers for colitis. This study was a proof-of-concept study using a gold-standard murine colitis model to inform further research in human work. Method(s): We used formalin-fixed paraffin-embedded intestinal sections from C57/BL6 mice (30 mice, three sections per mouse) with chronic colitis induced by 3% oral dextran sodium sulfate (n = 27), of which a subset (n = 14) were treated with intravenous human amnion epithelial cells and showed a reduction in histological severity of inflammation. Tissue sections were placed on a reflective slide, and an adjacent 5 mum section was stained with hematoxylin and eosin for comparison. Background scans and regions of interest from the intestinal mucosa were imaged using the Agilent Cary
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- 2021
233. Is vitamin D a useful biomarker in inflammatory bowel diseases?.
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Moore G., Yeaman F., Nguyen A., Lu Z., Abasszade J., Bell S., Gupta S., Moore G., Yeaman F., Nguyen A., Lu Z., Abasszade J., Bell S., and Gupta S.
- Abstract
Background and Aim: Vitamin D has been shown to play a role in inflammation in multiple conditions, including inflammatory bowel disease (IBD). Low vitamin D levels have been shown to be associated with active IBD in retrospective studies. Some evidence of an inverse correlation with disease activity and inflammatory markers exists. The current gold-standard inflammatory marker is fecal calprotectin (FC); however, FC testing is not reimbursed in Australia, and sample collection is not as simple as blood testing. We aimed to assess whether serum vitamin D level is useful as a biomarker in real time. Method(s): Quality assurance ethical approval was obtained from the hospital ethics committee. We collected retrospective data via a chart review of the hospital pathology system and medical records. Patients were initially identified using the pathology database to find those who had FC measured in 2019; then, a subset of patients with IBD with both FC and blood tests within 3 months was selected. Demographic data, IBD type, inflammatory markers, and vitamin D levels were obtained from patient records. The vitamin D levels were compared with levels of FC (with a positive FC level being set at 150 mug/g), C-reactive protein (CRP), albumin, hemoglobin, and platelets. Non-parametric tests were used for comparison. Result(s): We identified 616 patients from the initial cohort with FC tests. There were 328 patient episodes with matched FC and blood tests, including vitamin D, CRP, albumin, hemoglobin, and platelets. This subset comprised 101 patients with Crohn's disease (CD) with 198 time points of matched data and 68 patients with ulcerative colitis (UC) with 116 time points of matched data. There were 14 IBD-unspecified episodes. Of the patients with CD, 46% were male, and of the patients with UC, 43% were male. Median disease duration was 8 years (interquartile range, 4-13.5 years) for those with CD and 5.5 years (interquartile range, 3-12.5 years) for those with UC. Over
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- 2021
234. Flow Cytometry Phenotyping of Bone Marrow-Derived Macrophages from Wild-Type and Mif-/- Mice.
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Flynn J.K., Harris J., Deen N.S., Flynn J.K., Harris J., and Deen N.S.
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Phenotyping cells by flow cytometry is a powerful way to identify cell type and any morphological changes during cell culture. The staining procedure used in this chapter enables the characterization of mouse macrophages by a flow cytometry antibody panel which can be used for both bone marrow-derived macrophages (BMM) and macrophages derived from other tissues, such as the mouse spleen or peritoneal cavity. The surface and intracellular staining methods are versatile and can be applied to flow cytometry staining of several different cell types by changing the surface markers used with knowledge of which receptors are expressed on different cell types.
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- 2021
235. Community Approach Targeting Cirrhosis and Hepatocellular Carcinoma (CATCH): 4AGP, a new indirect biomarker-based algorithm that can predict risk of liver-related outcomes.
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Valaydon Z., Thompson A., Sood S., Lubel J., Kronborg I., Lewis D., Trezise K., Kemp W., Nicoll A., Bloom S., Ryan M., Freeman E., Vaz K., Wells R., Kodikara C., Sarraf B., Hirsch R., Satake S., Karunadasa H., Gardner S., Hartley I., Bell S., Gow P., Dev A., Roberts S., Valaydon Z., Thompson A., Sood S., Lubel J., Kronborg I., Lewis D., Trezise K., Kemp W., Nicoll A., Bloom S., Ryan M., Freeman E., Vaz K., Wells R., Kodikara C., Sarraf B., Hirsch R., Satake S., Karunadasa H., Gardner S., Hartley I., Bell S., Gow P., Dev A., and Roberts S.
- Abstract
Background and Aim: Transient elastography with liver stiffness measurement (LSM) is known to correlate with liver fibrosis and liver-related outcomes. 4AGP is a new algorithm that uses indirect biomarkers to determine those who are at risk of elevated LSM (> 12.5 kPa). It is calculated using alpha-fetoprotein, albumin, aspartate aminotransferase, age, sex (gender), and platelet count. Although 4AGP correlates with elevated LSM in patients with chronic hepatitis C (CHC) virus infection, it is unknown whether it also predicts liver-related outcomes. We aimed to determine whether LSM or 4AGP, or other indirect biomarkers such as aspartate aminotransferase to platelet ratio index (APRI), Fibrosis-4 (FIB-4), or Forns index, can best predict liver-related outcomes in a cohort of patients with CHC. Method(s): The Community Approach Targeting Cirrhosis and Hepatocellular Carcinoma (CATCH) study is a prospective study that recruited patient with CHC. Baseline LSM and indirect biomarkers were assessed (all were before treatment), along with outcomes (hepatocellular carcinoma [HCC], decompensation, or liver-related death). Survival curves were analyzed using a log-rank test, along with receiver operator characteristic (ROC) curves and Cox proportional hazard ratios. Optimal cut-off points were calculated, accounting for sensitivity, specificity, false positives and negatives, as well as the area under the ROC curve (AUROC). Result(s): A total of 1049 patients with CHC were recruited between October 2014 and June 2018. Mean follow-up was 3.4 +/- 0.7 years, indicating 3631 patient-years. Patients' mean age was 45.1 years (19-82), and 31.3% were female. Seven patients developed HCC; the best predictors of HCC development were, in order, 4AGP, Forns index, FIB-4, LSM, and APRI (Fig. 1a). An LSM of 21.3 kPa was the optimal cut-off point for predicting HCC, with a sensitivity of 85.7%, specificity of 92.2%, and a hazard ratio (HR) of 30 (95% CI, 5.7-150). A 4AGP value of -2.81 had
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- 2021
236. Assays for Measuring the Role of MIF in NLRP3 Inflammasome Activation.
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Pinar A.A., Harris J., Pinar A.A., and Harris J.
- Abstract
Hallmarks of NLRP3 inflammasome activation include the cleavage and secretion of the mature forms of caspase-1, IL-1beta, and IL-18 and aggregation of ASC into "specks." We have previously shown that macrophage migratory inhibitory factor (MIF) directly regulates activation of the NLRP3 inflammasome, inhibiting the release of interleukin (IL)-1alpha, IL-1beta, and IL-18. Here we present protocols for studying activation of the NLRP3 inflammasome in human and mouse macrophages and peripheral blood mononuclear cells (PBMCs). These protocols can also be applied to different cell types, such as fibroblasts, neutrophils, endothelial cells, and epithelial cells, although further optimization may be required for each. We also cover the stimulation of macrophages with established NLRP3 inflammasome activators.
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- 2021
237. Increased peripheral inflammation in schizophrenia is associated with worse cognitive performance and related cortical thickness reductions.
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Bousman C., Zalesky A., Pantelis C., Shannon Weickert C., Weickert T.W., North H.F., Bruggemann J., Cropley V., Swaminathan V., Sundram S., Lenroot R., Pereira A.M., Bousman C., Zalesky A., Pantelis C., Shannon Weickert C., Weickert T.W., North H.F., Bruggemann J., Cropley V., Swaminathan V., Sundram S., Lenroot R., and Pereira A.M.
- Abstract
While the biological substrates of brain and behavioural changes in persons with schizophrenia remain unclear, increasing evidence implicates that inflammation is involved. In schizophrenia, including first-episode psychosis and anti-psychotic naive patients, there are numerous reports of increased peripheral inflammation, cognitive deficits and neuropathologies such as cortical thinning. Research defining the relationship between inflammation and schizophrenia symptomatology and neuropathology is needed. Therefore, we analysed the level of C-reactive protein (CRP), a peripheral inflammation marker, and its relationship with cognitive functioning in a cohort of 644 controls and 499 schizophrenia patients. In a subset of individuals who underwent MRI scanning (99 controls and 194 schizophrenia cases), we tested if serum CRP was associated with cortical thickness. CRP was significantly increased in schizophrenia patients compared to controls, co-varying for age, sex, overweight/obesity and diabetes (p < 0.006E-10). In schizophrenia, increased CRP was mildly associated with worse performance in attention, controlling for age, sex and education (R =- 0.15, p = 0.001). Further, increased CRP was associated with reduced cortical thickness in three regions related to attention: the caudal middle frontal, the pars opercularis and the posterior cingulate cortices, which remained significant after controlling for multiple comparisons (all p < 0.05). Together, these findings indicate that increased peripheral inflammation is associated with deficits in cognitive function and brain structure in schizophrenia, especially reduced attention and reduced cortical thickness in associated brain regions. Using CRP as a biomarker of peripheral inflammation in persons with schizophrenia may help to identify vulnerable patients and those that may benefit from adjunctive anti-inflammatory treatments.Copyright © 2021, Springer-Verlag GmbH, DE part of Springer Nature.
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- 2021
238. n-3 Fatty Acid Biomarkers and Incident Type 2 Diabetes: An Individual Participant-Level Pooling Project of 20 Prospective Cohort Studies.
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Fretts A., Sun Q., Qian F., Ardisson Korat A.V., Imamura F., Marklund M., Tintle N., Mozaffarian D., Virtanen J.K., Zhou X., Bassett J.K., Lai H., Hirakawa Y., Chien K.-L., Wood A.C., Lankinen M., Murphy R.A., Samieri C., Micha R., Lemaitre R.N., Pertiwi K., de Mello V.D., Guan W., Forouhi N.G., Wareham N., Hu I.C.F.B., Riserus U., Lind L., Harris W.S., Shadyab A.H., Robinson J.G., Steffen L.M., Hodge A., Giles G.G., Ninomiya T., Uusitupa M., Tuomilehto J., Lindstrom J., Laakso M., Siscovick D.S., Helmer C., Geleijnse J.M., Wu J.H.Y., Fretts A., Sun Q., Qian F., Ardisson Korat A.V., Imamura F., Marklund M., Tintle N., Mozaffarian D., Virtanen J.K., Zhou X., Bassett J.K., Lai H., Hirakawa Y., Chien K.-L., Wood A.C., Lankinen M., Murphy R.A., Samieri C., Micha R., Lemaitre R.N., Pertiwi K., de Mello V.D., Guan W., Forouhi N.G., Wareham N., Hu I.C.F.B., Riserus U., Lind L., Harris W.S., Shadyab A.H., Robinson J.G., Steffen L.M., Hodge A., Giles G.G., Ninomiya T., Uusitupa M., Tuomilehto J., Lindstrom J., Laakso M., Siscovick D.S., Helmer C., Geleijnse J.M., and Wu J.H.Y.
- Abstract
OBJECTIVE: Prospective associations between n-3 fatty acid biomarkers and type 2 diabetes (T2D) risk are not consistent in individual studies. We aimed to summarize the prospective associations of biomarkers of alpha-linolenic acid (ALA), eicosapentaenoic acid (EPA), docosapentaenoic acid (DPA), and docosahexaenoic acid (DHA) with T2D risk through an individual participant-level pooled analysis. RESEARCH DESIGN AND METHODS: For our analysis we incorporated data from a global consortium of 20 prospective studies from 14 countries. We included 65,147 participants who had blood measurements of ALA, EPA, DPA, or DHA and were free of diabetes at baseline. De novo harmonized analyses were performed in each cohort following a prespecified protocol, and cohort-specific associations were pooled using inverse variance-weighted meta-analysis. RESULT(S): A total of 16,693 incident T2D cases were identified during follow-up (median follow-up ranging from 2.5 to 21.2 years). In pooled multivariable analysis, per interquintile range (difference between the 90th and 10th percentiles for each fatty acid), EPA, DPA, DHA, and their sum were associated with lower T2D incidence, with hazard ratios (HRs) and 95% CIs of 0.92 (0.87, 0.96), 0.79 (0.73, 0.85), 0.82 (0.76, 0.89), and 0.81 (0.75, 0.88), respectively (all P < 0.001). ALA was not associated with T2D (HR 0.97 [95% CI 0.92, 1.02]) per interquintile range. Associations were robust across prespecified subgroups as well as in sensitivity analyses. CONCLUSION(S): Higher circulating biomarkers of seafood-derived n-3 fatty acids, including EPA, DPA, DHA, and their sum, were associated with lower risk of T2D in a global consortium of prospective studies. The biomarker of plant-derived ALA was not significantly associated with T2D risk.Copyright © 2021 by the American Diabetes Association.
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- 2021
239. Measuring MIF in Biological Fluids.
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Vincent F.B., Lang T., Vincent F.B., and Lang T.
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MIF is a key regulator of host immune responses and increased levels secreted from cells, or found circulating systemically, have been implicated in the pathogenesis of many inflammatory and autoimmune disorders. Here, we describe methods for detecting and quantifying extracellular concentrations of MIF in both human- and murine-derived biological samples.
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- 2021
240. A Method for the Establishment of Human Lung Adenocarcinoma Patient-Derived Xenografts in Mice.
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Jenkins B.J., Lundy J., Saad M.I., Jenkins B.J., Lundy J., and Saad M.I.
- Abstract
Patient-derived xenografts (PDXs) are created by implanting human tumor tissue or cells into immunodeficent mice, and enable the study of tumor biology, biomarkers and response to therapy in vivo. This chapter describes a method for lung adenocarcinoma (LAC) PDX generation using subcutaneous implantation of tumor tissue and cell suspensions and incorporating the humanization of PDX models by reconstitution with human immune cells.Copyright © 2021, Springer Science+Business Media, LLC, part of Springer Nature.
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- 2021
241. Podocalyxin is a key negative regulator of human endometrial epithelial receptivity for embryo implantation.
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Vollenhoven B., Lim R., Rombauts L.J., Nie G., Paule S.G., Heng S., Samarajeewa N., Li Y., Mansilla M., Webb A.I., Nebl T., Young S.L., Lessey B.A., Hull M.L., Scelwyn M., Vollenhoven B., Lim R., Rombauts L.J., Nie G., Paule S.G., Heng S., Samarajeewa N., Li Y., Mansilla M., Webb A.I., Nebl T., Young S.L., Lessey B.A., Hull M.L., and Scelwyn M.
- Abstract
STUDY QUESTION: How is endometrial epithelial receptivity, particularly adhesiveness, regulated at the luminal epithelial surface for embryo implantation in the human? SUMMARY ANSWER: Podocalyxin (PCX), a transmembrane protein, was identified as a key negative regulator of endometrial epithelial receptivity; specific downregulation of PCX in the luminal epithelium in the mid-secretory phase, likely mediated by progesterone, may act as a critical step in converting endometrial surface from a non-receptive to an implantation-permitting state. WHAT IS KNOWN ALREADY: The human endometrium must undergo major molecular and cellular changes to transform from a non-receptive to a receptive state to accommodate embryo implantation. However, the fundamental mechanisms governing receptivity, particularly at the luminal surface where the embryo first interacts with, are not well understood. A widely held view is that upregulation of adhesion-promoting molecules is important, but the details are not well characterized. STUDY DESIGN, SIZE, DURATION: This study first aimed to identify novel adhesion-related membrane proteins with potential roles in receptivity in primary human endometrial epithelial cells (HEECs). Further experiments were then conducted to determine candidates' in vivo expression pattern in the human endometrium across the menstrual cycle, regulation by progesterone using cell culture, and functional importance in receptivity using in vitro human embryo attachment and invasion models. PARTICIPANTS/MATERIALS, SETTING, METHODS: Primary HEECs (n=9) were isolated from the proliferative phase endometrial tissue, combined into three pools, subjected to plasma membrane protein enrichment by ultracentrifugation followed by proteomics analysis, which led to the discovery of PCX as a novel candidate of interest. Immunohistochemical analysis determined the in vivo expression pattern and cellular localization of PCX in the human endometrium across the menstrual cycle (n=23).
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- 2021
242. Peripheral Immune Cell Ratios and Clinical Outcomes in Seropositive Autoimmune Encephalitis: A Study by the Australian Autoimmune Encephalitis Consortium.
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White O., Buzzard K., Nesbitt C., D'Souza W., Brodtmann A., Kalincik T., Butzkueven H., O'Brien T.J., Monif M., Griffiths S., Fielding J., Clough M., Tan T., Velakoulis D., Malpas C., Alpitsis R., Macdonell R., Tarlinton D., Reddel S., Hardy T., Taylor B., Long B., Seneviratne U., Kyndt C., Wijeratne T., Ligtermoet M., Tan M., Kulkarni J., Bourke R., Butler E., Beech P., Broadley J., Wesselingh R., White O., Buzzard K., Nesbitt C., D'Souza W., Brodtmann A., Kalincik T., Butzkueven H., O'Brien T.J., Monif M., Griffiths S., Fielding J., Clough M., Tan T., Velakoulis D., Malpas C., Alpitsis R., Macdonell R., Tarlinton D., Reddel S., Hardy T., Taylor B., Long B., Seneviratne U., Kyndt C., Wijeratne T., Ligtermoet M., Tan M., Kulkarni J., Bourke R., Butler E., Beech P., Broadley J., and Wesselingh R.
- Abstract
Objective: To examine the utility of the peripheral blood neutrophil-to-lymphocyte ratio (NLR) and monocyte-to-lymphocyte ratio (MLR) as biomarkers of prognosis in seropositive autoimmune encephalitis (AE). Method(s): In this multicenter study, we retrospectively analyzed 57 cases of seropositive AE with hospital admissions between January 2008 and June 2019. The initial full blood examination was used to determine each patients' NLR and MLR. The modified Rankin Scale (mRS) was utilized to assess the patients' follow-up disability at 12 months and then at final follow-up. Primary outcomes were mortality and mRS, while secondary outcomes were failure of first line treatment, ICU admission, and clinical relapse. Univariate and multivariable regression analysis was performed. Result(s): During initial hospital admission 44.7% of patients had unsuccessful first line treatment. After a median follow-up of 700 days, 82.7% had good functional outcome (mRS <=2) while five patients had died. On multivariable analysis, high NLR was associated with higher odds of first line treatment failure (OR 1.32, 95% CI 1.03-1.69, p = 0.029). Increased MLR was not associated with any short or long-term outcome. Conclusion(s): NLR on initial hospital admission blood tests may be provide important prognostic information for cases of seropositive AE. This study demonstrates the potential use of NLR as a prognostic marker in the clinical evaluation of patients with seropositive AE.© Copyright © 2021 Broadley, Wesselingh, Seneviratne, Kyndt, Beech, Buzzard, Nesbitt, D'Souza, Brodtmann, Kalincik, Butzkueven, O'Brien, Monif and Australian Autoimmune Encephalitis Consortium.
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- 2021
243. Staining MIF in Cells for Confocal Microscopy.
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Harris J. and Harris J.
- Abstract
Confocal microscopy is a powerful technique for immunofluorescence imaging of cells and tissues. The technique allows for detailed analysis of intracellular localization of molecules, as well as three-dimensional representation and analysis of samples, and can be used as a gateway to more advanced techniques, including FLIM-FRET and super-resolution microscopy. Relatively few studies have used confocal microscopy to study intracellular localization of macrophage migration inhibitory factor (MIF) in detail. This chapter outlines basic protocols and tips for staining MIF in fixed cells for confocal analysis.
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- 2021
244. The gut microbiome drives inter- and intra-individual differences in metabolism of bioactive small molecules.
- Author
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Williamson G., Kerimi A., Kraut N.U., da Encarnacao J.A., Williamson G., Kerimi A., Kraut N.U., and da Encarnacao J.A.
- Abstract
The origin of inter-individual variability in the action of bioactive small molecules from the diet is poorly understood and poses a substantial obstacle to harnessing their potential for attenuating disease risk. Epidemiological studies show that coffee lowers the risk of developing type 2 diabetes, independently of caffeine, but since coffee is a complex matrix, consumption gives rise to different classes of metabolites in vivo which in turn can affect multiple related pathways in disease development. We quantified key urinary coffee phenolic acid metabolites repeated three times in 36 volunteers, and observed the highest inter- and intra-individual variation for metabolites produced by the colonic microbiome. Notably, a urinary phenolic metabolite not requiring the action of the microbiota was positively correlated with fasting plasma insulin. These data highlight the role of the gut microbiota as the main driver of both intra- and inter-individual variation in metabolism of dietary bioactive small molecules.
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- 2021
245. Biomarkers and the Prediction of Adverse Outcomes in Preeclampsia: A Systematic Review and Meta-analysis.
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Mol B.W., Kemper J., Nguyen A., Lim S., Reddy M., Li W., Mol B.W., Kemper J., Nguyen A., Lim S., Reddy M., and Li W.
- Abstract
OBJECTIVE: To systematically review the performance of soluble fms-like tyrosine kinase-1 (sFlt-1), placental growth factor (PlGF), and the sFlt-1/PlGF ratio in predicting adverse outcomes in women with preeclampsia. DATA SOURCES: We performed a systematic search of MEDLINE, EMBASE, CINAHL, Cochrane, Scopus, ClinicalTrials.gov, and Emcare databases from 1989 to March 2019 to identify studies correlating sFlt-1, PlGF, and the sFlt-1/PlGF ratio with the occurrence of adverse outcomes in women with preeclampsia. METHODS OF STUDY SELECTION: Two independent reviewers screened 3,194 studies using Covidence. Studies were included if they examined the performance of sFLT-1, PlGF, or the sFLT-1/PlGF ratio in predicting adverse outcomes in women with suspected or confirmed preeclampsia. TABULATION, INTEGRATION, AND RESULTS: We extracted contingency tables with true-positive, false-positive, true-negative, and false-negative results. We calculated sensitivity, specificity, diagnostic odds ratios, and area under the summary receiver operating characteristic curve (area sROC) through a bivariate mixed-effects meta-analysis. Our literature search identified 3,194 articles, of which 33 (n=9,426 patients) were included. There was significant variation in the included studies with regard to the biomarkers and outcomes assessed. As such, few studies (n=4-8) were included in the meta-analysis component with significant heterogeneity between studies (I2=33-99). Nonetheless, both PlGF and the sFlt-1/PlGF ratio demonstrated area sROC values between 0.68 and 0.87 for the prediction of composite adverse maternal and perinatal outcomes, preterm birth and fetal growth restriction. CONCLUSION(S): Placental growth factor and the sFlt-1/PlGF ratio show prognostic promise for adverse outcomes in preeclampsia, but study heterogeneity limits their clinical utility. SYSTEMATIC REVIEW REGISTRATION: PROSPERO, CRD42019136207.Copyright © 2020 by the American College of Obstetricians and Gynecologists.
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- 2021
246. Serum Cytokine Profiling in Systemic Lupus Erythematosus, Analysed Using Unsupervised Machine Learning, Reveals Clinically Relevant Clusters.
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Boyd S., Vincent F., Ong J., Hoi A., Morand E., Nim H., Boyd S., Vincent F., Ong J., Hoi A., Morand E., and Nim H.
- Abstract
Background/Purpose: SLE is a heterogeneous disease, where a better understanding of molecular differences between patients is needed in order to direct therapy. Existing approaches generally examine mRNA expression, whereas therapeutic targets are mostly soluble or cellular proteins. We aimed to evaluate whether a serum cytokine proteomic profile of SLE patients analysed using an unbiased approach would yield clinically meaningful results. Method(s): Demographic and clinical data of SLE patients (ACR criteria) including disease activity (SLEDAI2K) and organ damage (SLICC Damage Index (SDI)), and matching serum samples, were collected prospectively. A wide-angled serum cytokine proteomics analysis was conducted using Quantibody, Luminex, and ELISA platforms. To reduce heterogeneous data complexity and remove redundant variables, unsupervised feature selection methods were applied. For clustering, machine learning approaches were used, and optimal cluster number confirmed by consensus clustering. Result(s): 198 SLE patients (median [IQR] age 46.7 [36.7, 56.3] years, 88.4% female, median SLEDAI2K 4 [2, 6], 52.5% with organ damage) and 37 sex/ethnicity-matched healthy subjects were recruited. 211 serum analytes were measured. Using unsupervised feature selection methods, we identified a reduced set of 10/211 analytes (MCP-1, GH, CTACK, HCC-1, CD14, ErbB3, E-Selectin, Trappin-2, Cathepsin S and IL-18). The dataset was then clustered, according to the analytes that remained after feature selection, using unsupervised machine learning approaches. k-means analysis produced a distinct result in terms of separability of two clusters that associated only in SLE (Figure 1), and was chosen as the final clustering algorithm. We analysed clinical parameters in patients categorised by these biomarker clusters, and found the clusters differed in clinical characteristics including organ damage (P = 0.04), proportion of patients with high ESR (P = 0.03), and SLEDAI2K (P = 0.08). Using
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- 2021
247. Bead-Based Assays for Validating Proteomic Profiles in Body Fluids
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Bendes, Annika, Dale, Matilda, Mattsson, Cecilia, Dodig-Crnkovic, Tea, Iglesias, Maria Jesus, Schwenk, Jochen M., Fredolini, Claudia, Bendes, Annika, Dale, Matilda, Mattsson, Cecilia, Dodig-Crnkovic, Tea, Iglesias, Maria Jesus, Schwenk, Jochen M., and Fredolini, Claudia
- Abstract
Protein biomarkers in biological fluids represent an important resource for improving the clinical management of diseases. Current proteomics technologies are capable of performing high-throughput and multiplex profiling in different types of fluids, often leading to the shortlisting of tens of candidate biomarkers per study. However, before reaching any clinical setting, these discoveries require thorough validation and an assay that would be suitable for routine analyses. In the path from biomarker discovery to validation, the performance of the assay implemented for the intended protein quantification is extremely critical toward achieving reliable and reproducible results. Development of robust sandwich immunoassays for individual candidates is challenging and labor and resource intensive, and multiplies when evaluating a panel of interesting candidates at the same time. Here we describe a versatile pipeline that facilitates the systematic and parallel development of multiple sandwich immunoassays using a bead-based technology., QC 20220316
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- 2021
- Full Text
- View/download PDF
248. Recent applications of microextraction sample preparation techniques in biological samples analysis
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Daryanavard, S. M., Zolfaghari, H., Abdel-Rehim, A., Abdel-Rehim, Mohamed, Daryanavard, S. M., Zolfaghari, H., Abdel-Rehim, A., and Abdel-Rehim, Mohamed
- Abstract
Analysis of biological samples is affected by interfering substances with chemical properties similar to those of the target analytes, such as drugs. Biological samples such as whole blood, plasma, serum, urine and saliva must be properly processed for separation, purification, enrichment and chemical modification to meet the requirements of the analytical instruments. This causes the sample preparation stage to be of undeniable importance in the analysis of such samples through methods such as microextraction techniques. The scope of this review will cover a comprehensive summary of available literature data on microextraction techniques playing a key role for analytical purposes, methods of their implementation in common biological samples, and finally, the most recent examples of application of microextraction techniques in preconcentration of analytes from urine, blood and saliva samples. The objectives and merits of each microextration technique are carefully described in detail with respect to the nature of the biological samples. This review presents the most recent and innovative work published on microextraction application in common biological samples, mostly focused on original studies reported from 2017 to date. The main sections of this review comprise an introduction to the microextraction techniques supported by recent application studies involving quantitative and qualitative results and summaries of the most significant, recently published applications of microextracion methods in biological samples. This article considers recent applications of several microextraction techniques in the field of sample preparation for biological samples including urine, blood and saliva, with consideration for extraction techniques, sample preparation and instrumental detection systems., QC 20220316
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- 2021
- Full Text
- View/download PDF
249. Affinity Proteomics Assays for Cardiovascular and Atherosclerotic Disease Biomarkers
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Iglesias, Maria Jesus, Schwenk, Jochen M., Odeberg, Jacob, Iglesias, Maria Jesus, Schwenk, Jochen M., and Odeberg, Jacob
- Abstract
Systematic exploration of the dynamic human plasma proteome enables the discovery of novel protein biomarkers. Using state-of-the-art technologies holds the promise to facilitate a better diagnosis and risk prediction of diseases. Cardiovascular disease (CVD) pathophysiology is characterized for unbalancing of processes such as vascular inflammation, endothelial dysfunction, or lipid profiles among others. Such processes have a direct impact on the dynamic and complex composition of blood and hence the plasma proteome. Therefore, the study of the plasma proteome comprises an excellent exploratory source of biomarker research particularly for CVD. We describe the protocol for performing the discovery of protein biomarker candidates using the suspension bead array technology. The process does not require depletion steps to remove abundant proteins and consumes only a few microliters of sample from the body fluid of interest. The approach is scalable to measure many analytes as well as large numbers of samples. Moreover, we describe a bead-assisted antibody-labeling process that helps to develop quantitative assays for validation purposes and facilitate the translation of the identified candidates into clinical studies., QC 20220316
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- 2021
- Full Text
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250. Serum Proteomic Profiling in Rheumatoid Arthritis by Antibody Suspension Bead Arrays
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Lourido, L., Paz-González, R., Ruiz-Romero, C., Nilsson, Peter, Blanco, F. J., Lourido, L., Paz-González, R., Ruiz-Romero, C., Nilsson, Peter, and Blanco, F. J.
- Abstract
The versatility of protein microarrays provides researchers with a wide variety of possibilities to address proteomic studies. Therefore, protein microarrays are becoming very useful tools to identify candidate biomarkers in human body fluids for disease states such as rheumatoid arthritis (RA). In RA serum, there is a high prevalence of rheumatoid factor (RF), which is an antibody with high specificity against Fc portion of IgG. The presence of RF, in particular RF-IgM, has the great potential to interfere with antibody-based immunoassays by nonspecifically binding capture antibodies. Because of this concern, we describe a procedure to reduce the interference of RF-IgM on RA serum protein profiling approaches based on multiplexed antibody suspension bead arrays., QC 20220112
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- 2021
- Full Text
- View/download PDF
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