61,279 results on '"A Bowden"'
Search Results
202. A genetic association study of circulating coagulation factor VIII and von Willebrand factor levels
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Abe, Namiko, Abecasis, Gonçalo, Aguet, Francois, Albert, Christine, Almasy, Laura, Alonso, Alvaro, Ament, Seth, Anderson, Peter, Anugu, Pramod, Applebaum-Bowden, Deborah, Ardlie, Kristin, Arking, Dan, Arnett, Donna K, Ashley-Koch, Allison, Aslibekyan, Stella, Assimes, Tim, Auer, Paul, Avramopoulos, Dimitrios, Ayas, Najib, Balasubramanian, Adithya, Barnard, John, Barnes, Kathleen, Barr, R. Graham, Barron-Casella, Emily, Barwick, Lucas, Beaty, Terri, Beck, Gerald, Becker, Diane, Becker, Lewis, Beer, Rebecca, Beitelshees, Amber, Benjamin, Emelia, Benos, Takis, Bezerra, Marcos, Bielak, Larry, Bis, Joshua, Blackwell, Thomas, Blangero, John, Blue, Nathan, Boerwinkle, Eric, Bowden, Donald W., Bowler, Russell, Brody, Jennifer, Broeckel, Ulrich, Broome, Jai, Brown, Deborah, Bunting, Karen, Burchard, Esteban, Bustamante, Carlos, Buth, Erin, Cade, Brian, Cardwell, Jonathan, Carey, Vincent, Carrier, Julie, Carson, April P., Carty, Cara, Casaburi, Richard, Casas Romero, Juan P, Casella, James, Castaldi, Peter, Chaffin, Mark, Chang, Christy, Chang, Yi-Cheng, Chasman, Daniel, Chavan, Sameer, Chen, Bo-Juen, Chen, Wei-Min, Ida Chen, Yii-Der, Cho, Michael, Choi, Seung Hoan, Chuang, Lee-Ming, Chung, Mina, Chung, Ren-Hua, Clish, Clary, Comhair, Suzy, Conomos, Matthew, Cornell, Elaine, Correa, Adolfo, Crandall, Carolyn, Crapo, James, Cupples, L. Adrienne, Curran, Joanne, Curtis, Jeffrey, Custer, Brian, Damcott, Coleen, Darbar, Dawood, David, Sean, Davis, Colleen, Daya, Michelle, de Andrade, Mariza, de las Fuentes, Lisa, de Vries, Paul, DeBaun, Michael, Deka, Ranjan, DeMeo, Dawn, Devine, Scott, Dinh, Huyen, Doddapaneni, Harsha, Duan, Qing, Dugan-Perez, Shannon, Duggirala, Ravi, Durda, Jon Peter, Dutcher, Susan K., Eaton, Charles, Ekunwe, Lynette, El Boueiz, Adel, Ellinor, Patrick, Emery, Leslie, Erzurum, Serpil, Farber, Charles, Farek, Jesse, Fingerlin, Tasha, Flickinger, Matthew, Fornage, Myriam, Franceschini, Nora, Frazar, Chris, Fu, Mao, Fullerton, Stephanie M., Fulton, Lucinda, Gabriel, Stacey, Gan, Weiniu, Gao, Shanshan, Gao, Yan, Gass, Margery, Geiger, Heather, Gelb, Bruce, Geraci, Mark, Germer, Soren, Gerszten, Robert, Ghosh, Auyon, Gibbs, Richard, Gignoux, Chris, Gladwin, Mark, Glahn, David, Gogarten, Stephanie, Gong, Da-Wei, Goring, Harald, Graw, Sharon, Gray, Kathryn J., Grine, Daniel, Gross, Colin, Gu, C. Charles, Guan, Yue, Guo, Xiuqing, Gupta, Namrata, Haessler, Jeff, Hall, Michael, Han, Yi, Hanly, Patrick, Harris, Daniel, Hawley, Nicola L., He, Jiang, Heavner, Ben, Heckbert, Susan, Hernandez, Ryan, Herrington, David, Hersh, Craig, Hidalgo, Bertha, Hixson, James, Hobbs, Brian, Hokanson, John, Hong, Elliott, Hoth, Karin, Hsiung, Chao (Agnes), Hu, Jianhong, Hung, Yi-Jen, Huston, Haley, Hwu, Chii Min, Irvin, Marguerite Ryan, Jackson, Rebecca, Jain, Deepti, Jaquish, Cashell, Johnsen, Jill, Johnson, Andrew, Johnson, Craig, Johnston, Rich, Jones, Kimberly, Kang, Hyun Min, Kaplan, Robert, Kardia, Sharon, Kelly, Shannon, Kenny, Eimear, Kessler, Michael, Khan, Alyna, Khan, Ziad, Kim, Wonji, Kimoff, John, Kinney, Greg, Konkle, Barbara, Kooperberg, Charles, Kramer, Holly, Lange, Christoph, Lange, Ethan, Lange, Leslie, Laurie, Cathy, Laurie, Cecelia, LeBoff, Meryl, Lee, Jiwon, Lee, Sandra, Lee, Wen-Jane, LeFaive, Jonathon, Levine, David, Levy, Dan, Lewis, Joshua, Li, Xiaohui, Li, Yun, Lin, Henry, Lin, Honghuang, Lin, Xihong, Liu, Simin, Liu, Yongmei, Liu, Yu, Loos, Ruth J. F., Lubitz, Steven, Lunetta, Kathryn, Luo, James, Magalang, Ulysses, Mahaney, Michael, Make, Barry, Manichaikul, Ani, Manning, Alisa, Manson, JoAnn, Martin, Lisa, Marton, Melissa, Mathai, Susan, Mathias, Rasika, May, Susanne, McArdle, Patrick, McDonald, Merry-Lynn, McFarland, Sean, McGarvey, Stephen, McGoldrick, Daniel, McHugh, Caitlin, McNeil, Becky, Mei, Hao, Meigs, James, Menon, Vipin, Mestroni, Luisa, Metcalf, Ginger, Meyers, Deborah A, Mignot, Emmanuel, Mikulla, Julie, Min, Nancy, Minear, Mollie, Minster, Ryan L, Mitchell, Braxton D., Moll, Matt, Momin, Zeineen, Montasser, May E., Montgomery, Courtney, Muzny, Donna, Mychaleckyj, Josyf C, Nadkarni, Girish, Naik, Rakhi, Naseri, Take, Natarajan, Pradeep, Nekhai, Sergei, Nelson, Sarah C., Neltner, Bonnie, Nessner, Caitlin, Nickerson, Deborah, Nkechinyere, Osuji, North, Kari, O'Connell, Jeff, O'Connor, Tim, Ochs-Balcom, Heather, Okwuonu, Geoffrey, Pack, Allan, Paik, David T., Palmer, Nicholette, Pankow, James, Papanicolaou, George, Parker, Cora, Peloso, Gina, Peralta, Juan Manuel, Perez, Marco, Perry, James, Peters, Ulrike, Peyser, Patricia, Phillips, Lawrence S, Pleiness, Jacob, Pollin, Toni, Post, Wendy, Becker, Julia Powers, Boorgula, Meher Preethi, Preuss, Michael, Psaty, Bruce, Qasba, Pankaj, Qiao, Dandi, Qin, Zhaohui, Rafaels, Nicholas, Raffield, Laura, Rajendran, Mahitha, Ramachandran, Vasan S., Rao, D. C., Rasmussen-Torvik, Laura, Ratan, Aakrosh, Redline, Susan, Reed, Robert, Reeves, Catherine, Regan, Elizabeth, Reiner, Alex, Reupena, Muagututi‘a Sefuiva, Rice, Ken, Rich, Stephen, Robillard, Rebecca, Robine, Nicolas, Roden, Dan, Roselli, Carolina, Rotter, Jerome, Ruczinski, Ingo, Runnels, Alexi, Russell, Pamela, Ruuska, Sarah, Ryan, Kathleen, Sabino, Ester Cerdeira, Saleheen, Danish, Salimi, Shabnam, Salvi, Sejal, Salzberg, Steven, Sandow, Kevin, Sankaran, Vijay G., Santibanez, Jireh, Schwander, Karen, Schwartz, David, Sciurba, Frank, Seidman, Christine, Seidman, Jonathan, Sériès, Frédéric, Sheehan, Vivien, Sherman, Stephanie L., Shetty, Amol, Shetty, Aniket, Hui-Heng Sheu, Wayne, Shoemaker, M. Benjamin, Silver, Brian, Silverman, Edwin, Skomro, Robert, Smith, Albert Vernon, Smith, Jennifer, Smith, Josh, Smith, Nicholas, Smith, Tanja, Smoller, Sylvia, Snively, Beverly, Snyder, Michael, Sofer, Tamar, Sotoodehnia, Nona, Stilp, Adrienne M., Storm, Garrett, Streeten, Elizabeth, Su, Jessica Lasky, Sung, Yun Ju, Sylvia, Jody, Szpiro, Adam, Taliun, Daniel, Tang, Hua, Taub, Margaret, Taylor, Kent D., Taylor, Matthew, Taylor, Simeon, Telen, Marilyn, Thornton, Timothy A., Threlkeld, Machiko, Tinker, Lesley, Tirschwell, David, Tishkoff, Sarah, Tiwari, Hemant, Tong, Catherine, Tracy, Russell, Tsai, Michael, Vaidya, Dhananjay, Van Den Berg, David, VandeHaar, Peter, Vrieze, Scott, Walker, Tarik, Wallace, Robert, Walts, Avram, Wang, Fei Fei, Wang, Heming, Wang, Jiongming, Watson, Karol, Watt, Jennifer, Weeks, Daniel E., Weinstock, Joshua, Weir, Bruce, Weiss, Scott T, Weng, Lu-Chen, Wessel, Jennifer, Willer, Cristen, Williams, Kayleen, Williams, L. Keoki, Wilson, Carla, Wilson, James, Winterkorn, Lara, Wong, Quenna, Wu, Joseph, Xu, Huichun, Yanek, Lisa, Yang, Ivana, Yu, Ketian, Zekavat, Seyedeh Maryam, Zhang, Yingze, Zhao, Snow Xueyan, Zhao, Wei, Zhu, Xiaofeng, Ziv, Elad, Zody, Michael, Zoellner, Sebastian, Lindstrom, Sara, Wang, Lu, Smith, Erin N., Gordon, William, van Hylckama Vlieg, Astrid, Brody, Jennifer A., Pattee, Jack W., Haessler, Jeffrey, Brumpton, Ben M., Chasman, Daniel I., Suchon, Pierre, Chen, Ming-Huei, Turman, Constance, Germain, Marine, Wiggins, Kerri L., MacDonald, James, Braekkan, Sigrid K., Armasu, Sebastian M., Pankratz, Nathan, Jackson, Rabecca D., Nielsen, Jonas B., Giulianini, Franco, Puurunen, Marja K., Ibrahim, Manal, Heckbert, Susan R., Bammler, Theo K., Frazer, Kelly A., McCauley, Bryan M., Taylor, Kent, Pankow, James S., Reiner, Alexander P., Gabrielsen, Maiken E., Deleuze, Jean-François, O'Donnell, Chris J., Kim, Jihye, McKnight, Barbara, Kraft, Peter, Hansen, John-Bjarne, Rosendaal, Frits R., Heit, John A., Psaty, Bruce M., Tang, Weihong, Hveem, Kristian, Ridker, Paul M., Morange, Pierre-Emmanuel, Johnson, Andrew D., Kabrhel, Christopher, AlexandreTrégouët, David, Smith, Nicholas L., de Vries, Paul S., Reventun, Paula, Brown, Michael R., Heath, Adam S., Huffman, Jennifer E., Le, Ngoc-Quynh, Bebo, Allison, Temprano-Sagrera, Gerard, Raffield, Laura M., Ozel, Ayse Bilge, Thibord, Florian, Lewis, Joshua P., Rodriguez, Benjamin A. T., Polasek, Ozren, Yanek, Lisa R., Carrasquilla, German D., Marioni, Riccardo E., Kleber, Marcus E., Trégouët, David-Alexandre, Yao, Jie, Li-Gao, Ruifang, Joshi, Peter K., Trompet, Stella, Martinez-Perez, Angel, Ghanbari, Mohsen, Howard, Tom E., Reiner, Alex P., Arvanitis, Marios, Ryan, Kathleen A., Bartz, Traci M., Rudan, Igor, Faraday, Nauder, Linneberg, Allan, Davies, Gail, Delgado, Graciela E., Klaric, Lucija, Noordam, Raymond, van Rooij, Frank, Curran, Joanne E., Wheeler, Marsha M., Osburn, William O., O'Connell, Jeffrey R., Beswick, Andrew, Kolcic, Ivana, Souto, Juan Carlos, Becker, Lewis C., Hansen, Torben, Doyle, Margaret F., Harris, Sarah E., Moissl, Angela P., Rich, Stephen S., Campbell, Harry, Stott, David J., Soria, Jose Manuel, de Maat, Moniek P. M., Brody, Lawrence C., Auer, Paul L., Ben-Shlomo, Yoav, Hayward, Caroline, Mathias, Rasika A., Kilpeläinen, Tuomas O., Lange, Leslie A., Cox, Simon R., März, Winfried, Rotter, Jerome I., Mook-Kanamori, Dennis O., Wilson, James F., van der Harst, Pim, Jukema, J. Wouter, Ikram, M. Arfan, Desch, Karl C., Sabater-Lleal, Maria, Lowenstein, Charles J., and Morrison, Alanna C.
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- 2024
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203. Polyvinylalcohol-carbazate mitigates acute lung injury caused by hydrochloric acid
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Caijuan Dong, Jielu Liu, Alessandro Quaranta, Xu Jing, Mu Nie, Craig E. Wheelock, Benjamin Murrell, Jonathan M. Coquet, Tim Melander Bowden, Thomas Engstrand, and Mikael Adner
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acute respiratory distress syndrome ,aspiration pneumonia ,oxidative stress ,pharmacological treatment ,intranasal administration ,Therapeutics. Pharmacology ,RM1-950 - Abstract
BackgroundAcute lung injury (ALI) and acute respiratory distress syndrome (ARDS) are important causes of morbidity and mortality in critically ill patients. Gastric contents aspiration is one of the most common causes of ALI/ARDS. To date, there are still no specific and effective pharmacological treatments for ALI/ARDS. Polyvinylalcohol-carbazate (PVAC), a polymer that can bind endogenous aldehydes, neutralize oxidative stress and inhibit inflammatory factors, may be a potential treatment for ALI/ARDS.MethodsA hydrochloric acid (HCl) induced mouse model was employed to assess the effect of PVAC. The changes of lung mechanics, pulmonary edema, histology and immune cells, cytokines, and lipid mediators in bronchioalveolar lavage fluid (BALF) were investigated in HCl-challenged mice.ResultsIn the HCl model, PVAC administration alleviated airway hyperresponsiveness and improved pulmonary edema and damage. In addition, it decreased the recruitment of neutrophils to the lung, and inhibited the increase of IL-6, TNF-α and leukotriene B4.ConclusionThese data indicates that PVAC is a potential candidate for the treatment of ALI/ARDS induced by aspiration of gastric acid or for the control of “asthma-like” symptoms in patients with gastroesophageal reflux.
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- 2024
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204. IPDLN Workshop: Opportunities for Cross-Country Comparisons of Linked Administrative Education and Health Data
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Anne-Marie Nybo Andersen, Siddartha Aradhya, Josephine Funck Bilsteen, Nick Bowden, Erin Early, Kathleen Falster, Martin Flatø, Michael Fleming, Rob French, Erika Hagemann, Katie Harron, Jen Keating, Gissler Mika, Rebecca Mitchell, Alicia Montgomerie, Nathan Nickell, Irene Papanicolas, Rhiannon Pilkington, Paul Romitti, Sujitha Ratnasingham, Lisa Smithers, Nieves Valdés, and Ben Wilson
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Demography. Population. Vital events ,HB848-3697 - Abstract
Objectives To understand how we can better initiate and run international collaborations to deliver tangible and impactful findings using population-wide linked health and education data. Approach Representatives from 14 countries (America, Australia, Canada, Chile, Denmark, England, Finland, Germany, New Zealand, Northern Ireland, Norway, Scotland, Sweden, Wales) summarised the potential for research using their linked administrative health and education data. The scope for collaboration and comparison of research findings across countries was explored. Results Several substantive research themes emerged, including the quantifying of differences in educational outcomes by health conditions and other early life factors, using health data to better identify and explore the special educational needs identified in educational records, using linked health and education data to identify and explore reasons for absenteeism from school. Conclusions The workshop showcased the primary themes for research and the data assets available within each country for comparative work. Further work is required to more robustly document the available detail within these datasets, collaboratively develop protocol templates for comparative studies, and develop pilot, proof of concept, studies.
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- 2024
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205. Process evaluation of a cluster randomised implementation trial examining strategies to increase early access to exercise for people with knee osteoarthritis: protocol
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Jocelyn L Bowden, Kathryn Mills, Justine M Naylor, Joseph Descallar, Robert Boland, Margery Pardey, and Amy Orsatti
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Medicine - Abstract
Introduction First steps for knee osteoarthritis (OA) is a cluster randomised implementation trial examining the effect of an educational reminder message included in knee X-ray reports on the proportion of people subsequently referred to exercise professionals for their knee OA. Evaluating the processes supporting the completion of the study and the efficacy of the reminder message is essential to interpreting the outcomes of the study and aiding translation into practice.Methods and analysis We will conduct a concurrent process evaluation throughout the current study using a previously published framework for examining cluster randomised trials. This framework divides processes into those occurring at the cluster level and those at the target population level. For the current study, the cluster level is within radiology clinics. The target population is people with newly diagnosed radiologically evident, structural knee OA. A mixed methods design, incorporating survey data, administrative records, field notes and semi-structured interviews with representatives from radiology clinics and people with knee OA, will evaluate these processes. The focus of the evaluation will be recruitment and response processes of the radiology clinics and delivery and response processes for the people with knee OA. We will also describe the context and explore how the nudge theory of behavioural change influences the outcome of the study.Ethics and dissemination The study protocol, inclusive of the process evaluation, was approved by Macquarie University Human Research Ethics Committee (#520221190343842). Findings will be disseminated through national and international conferences, national industry stakeholders and patient advocacy groups to reach all levels of healthcare. Staff at radiology clinics and people with knee OA involved in interviews provide written, informed consent to participate in the process evaluation. Specific findings will be incorporated into training modules aimed at radiology clinics and will be developed by our industry partners.Trial registration Prospectively registered with the Australian New Zealand Clinical Trials Registry (ACTRN12622001414707p). Registration occurred in December 2022
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- 2024
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206. Relationship Between Posterior Tibial Artery Blood Flow And Lower Leg Flexibility Among Collegiate Runners
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Jeffrey Williams, Megan Battles, Rachel Bowden, Cameron Greene, Arbin Thapaliya, and Justin Stanek
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Medicine ,Sports medicine ,RC1200-1245 - Abstract
Purpose: Understanding relationships between blood flow and muscle inflexibility in the lower leg can support improved healthcare competency. Sports medicine practitioners might use the reference ranges and knowledge of relationships among these variables to support effective health screenings among their competitive runners. These variables have been linked in other areas of the body where inflexibility in the pectoralis minor and scalene muscles have been associated with diminished blood flow to the upper limb. No studies, however, have examined the relationship between vascular and mobility characteristics in the lower legs of runners. Therefore, the purpose of this study was to examine the relationship between blood flow in the posterior tibial artery and ankle range of motion (ROM) among competitive runners. Methods: Blood flow in the posterior tibial artery and ankle ROM were measured bilaterally on twenty-five, asymptomatic collegiate track athletes (15 males, 10 females, age = 20.0±1.2 years, height = 171.5±10.2 cm, mass = 66.7±13.7 kg) using diagnostic ultrasound and standard goniometry, respectively. Pearson correlation analysis was used to analyze the relationship between blood flow in the posterior tibial artery and ROM of the ankle joint. Results: Findings revealed no significant relationship between blood flow in the dominant leg’s posterior tibial artery and dorsiflexion (r=.14, P=.52, CI95% = -0.27 – 0.51) or plantarflexion (r=-.32, P=.12, CI95% = -0.63 – 0.09) and no significant relationship between blood flow in the non-dominant leg’s posterior tibial artery and dorsiflexion (r=-.02, P=.93; CI95% = -0.41 – 0.38) or plantarflexion (r=-.02, P=.92; CI95% = -0.41 – 0.38). Conclusion: While muscle inflexibility is associated with compromised blood flow in other body regions, findings of this study demonstrated no relationship between the variables within the lower legs of a sample of competitive runners. Sports medicine practitioners should consider these findings in their efforts to predict, prevent, and manage potential vascular and musculoskeletal adaptations among clients/patients who are competitive runners.
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- 2024
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207. Exploratory study of associations between monetary reward anticipation brain responses and mu-opioid signalling in alcohol dependence, gambling disorder and healthy controls
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Samuel Turton, Louise M. Paterson, James FM. Myers, Inge Mick, Chen-Chia Lan, John McGonigle, Henrietta Bowden-Jones, Luke Clark, David J. Nutt, and Anne R. Lingford-Hughes
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Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
Alcohol dependence (AD) and gambling disorder (GD) are common addiction disorders with significant physical and mental health consequences. AD and GD are associated with dysregulated responses to reward which could be due to a common mechanism of dysregulated endogenous opioid signalling. We explored associations between reward anticipation responses, using the Monetary Incentive Delay (MID) functional magnetic resonance imaging (fMRI) task, and mu-opioid receptor (MOR) availability and endogenous opioid release capacity using [11C]carfentanil positron emission tomography (PET), in 13 AD, 15 GD and 14 heathy control (HC) participants. We also examined differences in MID task reward anticipation responses between AD, GD and HC participants. These were secondary exploratory analysis of data collected to examine differences in MOR PET in addiction. We did not find significant differences in MID win > neutral anticipation BOLD responses compared between participant groups in a priori ROIs (ventral striatum, putamen, caudate) or whole brain analyses. We found no significant correlations between MID win > neutral anticipation BOLD responses and [11C]carfentanil PET measures, except for limited negative correlations between putamen MOR availability and MID win > neutral anticipation BOLD response in AD participants. Previous research has suggested a limited role of endogenous opioid signalling on MID task reward anticipation responses in AD and HCs as these responses are not modulated by opioid receptor blockade and this may explain our lack of significant correlations in HC and AD or GD participants. Our results, particularly the lack of differences in MID win > neutral anticipation BOLD responses across participants groups, may be limited due to only including AD or GD participants who are abstinent or in active treatment.
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- 2024
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208. New Zealanders living with a family member who has a long-term health condition: cross sectional analysis of integrated Census and administrative data
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Lisa Underwood, Nick Bowden, Andrea Teng, Ofa Dewes, Lukas Marek, and Barry Milne
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Demography. Population. Vital events ,HB848-3697 - Abstract
Background Living with a family member who has a long-term health condition (HC) is associated with poorer health and well-being outcomes, but the number and socio-demographics of people and families impacted by a family member who has an HC is unknown. Methods Using the Integrated Data Infrastructure (IDI), a collection of linked administrative datasets for the full New Zealand (NZ) population, we identified n= 1,043,172 families using 2013 NZ Census data, and used health data over the previous 5-years to ascertain whether people in these families (n=3,137,517) had cancer, chronic obstructive pulmonary disease, coronary health disease, diabetes, dementia, gout, stroke, traumatic brain injury (TBI) or a mental health/behavioural condition (MHBC). Results Over 60% of families included at least one person with a HC. The most common HCs were MHBCs (39.4% of families), diabetes (16.0%), and TBI (13.9%). A high proportion of multi-generation families (73.9%) included a member with a HC. Two-thirds (67.7%) of Pacific Peoples either had a HC themselves or were living with a family member who had a HC, compared with 62.3% of Europeans and 62.5% of Māori (the indigenous peoples of NZ). At the highest level of socioeconomic deprivation, 57.6% of children lived with a family member who had a HC. Conclusions Three in five NZ families were living with a HC, with differences in the proportion affected according to family composition, socio-economic status and an individuals’ ethnicity. This suggests that there are a substantial number of people at risk of the associated poor outcomes.
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- 2024
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209. Deconstructing Self-Supervised Monocular Reconstruction: The Design Decisions that Matter
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Spencer, Jaime, Russell, Chris, Hadfield, Simon, and Bowden, Richard
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Computer Science - Computer Vision and Pattern Recognition ,Computer Science - Computational Geometry ,Computer Science - Machine Learning - Abstract
This paper presents an open and comprehensive framework to systematically evaluate state-of-the-art contributions to self-supervised monocular depth estimation. This includes pretraining, backbone, architectural design choices and loss functions. Many papers in this field claim novelty in either architecture design or loss formulation. However, simply updating the backbone of historical systems results in relative improvements of 25%, allowing them to outperform the majority of existing systems. A systematic evaluation of papers in this field was not straightforward. The need to compare like-with-like in previous papers means that longstanding errors in the evaluation protocol are ubiquitous in the field. It is likely that many papers were not only optimized for particular datasets, but also for errors in the data and evaluation criteria. To aid future research in this area, we release a modular codebase (https://github.com/jspenmar/monodepth_benchmark), allowing for easy evaluation of alternate design decisions against corrected data and evaluation criteria. We re-implement, validate and re-evaluate 16 state-of-the-art contributions and introduce a new dataset (SYNS-Patches) containing dense outdoor depth maps in a variety of both natural and urban scenes. This allows for the computation of informative metrics in complex regions such as depth boundaries., Comment: https://github.com/jspenmar/monodepth_benchmark
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- 2022
210. Learning an Interpretable Model for Driver Behavior Prediction with Inductive Biases
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Arbabi, Salar, Tavernini, Davide, Fallah, Saber, and Bowden, Richard
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Computer Science - Robotics - Abstract
To plan safe maneuvers and act with foresight, autonomous vehicles must be capable of accurately predicting the uncertain future. In the context of autonomous driving, deep neural networks have been successfully applied to learning predictive models of human driving behavior from data. However, the predictions suffer from cascading errors, resulting in large inaccuracies over long time horizons. Furthermore, the learned models are black boxes, and thus it is often unclear how they arrive at their predictions. In contrast, rule-based models, which are informed by human experts, maintain long-term coherence in their predictions and are human-interpretable. However, such models often lack the sufficient expressiveness needed to capture complex real-world dynamics. In this work, we begin to close this gap by embedding the Intelligent Driver Model, a popular hand-crafted driver model, into deep neural networks. Our model's transparency can offer considerable advantages, e.g., in debugging the model and more easily interpreting its predictions. We evaluate our approach on a simulated merging scenario, showing that it yields a robust model that is end-to-end trainable and provides greater transparency at no cost to the model's predictive accuracy.
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- 2022
211. AFT-VO: Asynchronous Fusion Transformers for Multi-View Visual Odometry Estimation
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Kaygusuz, Nimet, Mendez, Oscar, and Bowden, Richard
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Computer Science - Computer Vision and Pattern Recognition ,Computer Science - Robotics - Abstract
Motion estimation approaches typically employ sensor fusion techniques, such as the Kalman Filter, to handle individual sensor failures. More recently, deep learning-based fusion approaches have been proposed, increasing the performance and requiring less model-specific implementations. However, current deep fusion approaches often assume that sensors are synchronised, which is not always practical, especially for low-cost hardware. To address this limitation, in this work, we propose AFT-VO, a novel transformer-based sensor fusion architecture to estimate VO from multiple sensors. Our framework combines predictions from asynchronous multi-view cameras and accounts for the time discrepancies of measurements coming from different sources. Our approach first employs a Mixture Density Network (MDN) to estimate the probability distributions of the 6-DoF poses for every camera in the system. Then a novel transformer-based fusion module, AFT-VO, is introduced, which combines these asynchronous pose estimations, along with their confidences. More specifically, we introduce Discretiser and Source Encoding techniques which enable the fusion of multi-source asynchronous signals. We evaluate our approach on the popular nuScenes and KITTI datasets. Our experiments demonstrate that multi-view fusion for VO estimation provides robust and accurate trajectories, outperforming the state of the art in both challenging weather and lighting conditions.
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- 2022
212. Free-Standing Epitaxial SrTiO$_3$ Nanomembranes via Remote Epitaxy using Hybrid Molecular Beam Epitaxy
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Yoon, Hyojin, Truttmann, Tristan K., Liu, Fengdeng, Matthews, Bethany E., Choo, Sooho, Su, Qun, Saraswat, Vivek, Manzo, Sebastian, Arnold, Michael S., Bowden, Mark E., Kawasaki, Jason K., Koester, Steven J., Spurgeon, Steven R., Chambers, Scott A., and Jalan, Bharat
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Condensed Matter - Materials Science ,Physics - Applied Physics - Abstract
The epitaxial growth of functional materials using a substrate with a graphene layer is a highly desirable method for improving structural quality and obtaining free-standing epitaxial nano-membranes for scientific study, applications, and economical reuse of substrates. However, the aggressive oxidizing conditions typically employed to grow epitaxial perovskite oxides can damage graphene. Here, we demonstrate a technique based on hybrid molecular beam epitaxy that does not require an independent oxygen source to achieve epitaxial growth of complex oxides without damaging the underlying graphene. The technique produces films with self-regulating cation stoichiometry control and epitaxial orientation to the oxide substrate. Furthermore, the films can be exfoliated and transferred to foreign substrates while leaving the graphene on the original substrate. These results open the door to future studies of previously unattainable free-standing nano-membranes grown in an adsorption-controlled manner by hybrid molecular beam epitaxy, and has potentially important implications for the commercial application of perovskite oxides in flexible electronics., Comment: 20 pages, 6 figures
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- 2022
213. The rise and rise of the modern state
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Bowden, Bradley
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- 2021
214. Keeping Up with Health Care Literature
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Schuhler, Paulina and Bowden, Vicky R.
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Vocational guidance ,Information management ,Company systems management ,Medical literature -- Information management ,Nurses -- Vocational guidance - Abstract
Dissemination of scientific information ensures the advancement of health care practices. The scientific method requires sharing research and evidence-based findings to promote replication and further the profession's progress (Loscalzo, 2016). [...], Engagement with scientific literature is essential for health care professionals. Overcoming barriers such time constraints and lack of access to resources is possible through direct and indirect strategies. These methods are crucial for staying informed and delivering high-quality patient care. Keywords: Health care literature, electronic alerts, podcasts, social media.
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- 2024
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215. Claudia Daniotti, Reinventing Alexander. Myth, Legend, History in Renaissance Italian Art (Alexander redivivus, vol. 15), Turnhout: Brepols, 2022, pp. 348, ISBN 9782503597430, €100
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Bowden, Hugh
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- 2024
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216. Powerful, scalable and resource-efficient meta-analysis of rare variant associations in large whole genome sequencing studies
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Li, Xihao, Quick, Corbin, Zhou, Hufeng, Gaynor, Sheila M, Liu, Yaowu, Chen, Han, Selvaraj, Margaret Sunitha, Sun, Ryan, Dey, Rounak, Arnett, Donna K, Bielak, Lawrence F, Bis, Joshua C, Blangero, John, Boerwinkle, Eric, Bowden, Donald W, Brody, Jennifer A, Cade, Brian E, Correa, Adolfo, Cupples, L Adrienne, Curran, Joanne E, de Vries, Paul S, Duggirala, Ravindranath, Freedman, Barry I, Göring, Harald HH, Guo, Xiuqing, Haessler, Jeffrey, Kalyani, Rita R, Kooperberg, Charles, Kral, Brian G, Lange, Leslie A, Manichaikul, Ani, Martin, Lisa W, McGarvey, Stephen T, Mitchell, Braxton D, Montasser, May E, Morrison, Alanna C, Naseri, Take, O’Connell, Jeffrey R, Palmer, Nicholette D, Peyser, Patricia A, Psaty, Bruce M, Raffield, Laura M, Redline, Susan, Reiner, Alexander P, Reupena, Muagututi’a Sefuiva, Rice, Kenneth M, Rich, Stephen S, Sitlani, Colleen M, Smith, Jennifer A, Taylor, Kent D, Vasan, Ramachandran S, Willer, Cristen J, Wilson, James G, Yanek, Lisa R, Zhao, Wei, Rotter, Jerome I, Natarajan, Pradeep, Peloso, Gina M, Li, Zilin, and Lin, Xihong
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Biological Sciences ,Genetics ,Precision Medicine ,Biotechnology ,Human Genome ,Good Health and Well Being ,Genome-Wide Association Study ,Whole Genome Sequencing ,Exome Sequencing ,Phenotype ,Lipids ,NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium ,TOPMed Lipids Working Group ,Medical and Health Sciences ,Developmental Biology ,Agricultural biotechnology ,Bioinformatics and computational biology - Abstract
Meta-analysis of whole genome sequencing/whole exome sequencing (WGS/WES) studies provides an attractive solution to the problem of collecting large sample sizes for discovering rare variants associated with complex phenotypes. Existing rare variant meta-analysis approaches are not scalable to biobank-scale WGS data. Here we present MetaSTAAR, a powerful and resource-efficient rare variant meta-analysis framework for large-scale WGS/WES studies. MetaSTAAR accounts for relatedness and population structure, can analyze both quantitative and dichotomous traits and boosts the power of rare variant tests by incorporating multiple variant functional annotations. Through meta-analysis of four lipid traits in 30,138 ancestrally diverse samples from 14 studies of the Trans Omics for Precision Medicine (TOPMed) Program, we show that MetaSTAAR performs rare variant meta-analysis at scale and produces results comparable to using pooled data. Additionally, we identified several conditionally significant rare variant associations with lipid traits. We further demonstrate that MetaSTAAR is scalable to biobank-scale cohorts through meta-analysis of TOPMed WGS data and UK Biobank WES data of ~200,000 samples.
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- 2023
217. Metabolomic profiling of glucose homeostasis in African Americans: the Insulin Resistance Atherosclerosis Family Study (IRAS-FS)
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Okut, Hayrettin, Lu, Yingchang, Palmer, Nicholette D, Chen, Yii-Der Ida, Taylor, Kent D, Norris, Jill M, Lorenzo, Carlos, Rotter, Jerome I, Langefeld, Carl D, Wagenknecht, Lynne E, Bowden, Donald W, and Ng, Maggie CY
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Medical Biochemistry and Metabolomics ,Analytical Chemistry ,Biomedical and Clinical Sciences ,Chemical Sciences ,Diabetes ,Prevention ,Nutrition ,Clinical Research ,Obesity ,Minority Health ,Metabolic and endocrine ,Humans ,Atherosclerosis ,Black or African American ,Diabetes Mellitus ,Type 2 ,Glucose ,Glutamates ,Homeostasis ,Insulin Resistance ,Metabolomics ,Glucose homeostasis ,African Americans ,Biochemistry and Cell Biology ,Clinical Sciences ,Biochemistry and cell biology ,Medical biochemistry and metabolomics ,Analytical chemistry - Abstract
IntroductionAfrican Americans are at increased risk for type 2 diabetes.ObjectivesThis work aimed to examine metabolomic signature of glucose homeostasis in African Americans.MethodsWe used an untargeted liquid chromatography-mass spectrometry metabolomic approach to comprehensively profile 727 plasma metabolites among 571 African Americans from the Insulin Resistance Atherosclerosis Family Study (IRAS-FS) and investigate the associations between these metabolites and both the dynamic (SI, insulin sensitivity; AIR, acute insulin response; DI, disposition index; and SG, glucose effectiveness) and basal (HOMA-IR and HOMA-B) measures of glucose homeostasis using univariate and regularized regression models. We also compared the results with our previous findings in the IRAS-FS Mexican Americans.ResultsWe confirmed increased plasma metabolite levels of branched-chain amino acids and their metabolic derivatives, 2-aminoadipate, 2-hydroxybutyrate, glutamate, arginine and its metabolic derivatives, carbohydrate metabolites, and medium- and long-chain fatty acids were associated with insulin resistance, while increased plasma metabolite levels in the glycine, serine and threonine metabolic pathway were associated with insulin sensitivity. We also observed a differential ancestral effect of glutamate on glucose homeostasis with significantly stronger effects observed in African Americans than those previously observed in Mexican Americans.ConclusionWe extended the observations that metabolites are useful biomarkers in the identification of prediabetes in individuals at risk of type 2 diabetes in African Americans. We revealed, for the first time, differential ancestral effect of certain metabolites (i.e., glutamate) on glucose homeostasis traits. Our study highlights the need for additional comprehensive metabolomic studies in well-characterized multiethnic cohorts.
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- 2023
218. The Ethanol–Ethyl Acetate System as a Biogenic Hydrogen Carrier
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Mevawala, Chirag, Brooks, Kriston, Bowden, Mark E, Breunig, Hanna M, Tran, Ba L, Gutiérrez, Oliver Y, Autrey, Tom, and Müller, Karsten
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Affordable and Clean Energy ,Climate Action ,bioresources ,hydrogen storage ,organic carriers ,process models ,Chemical Engineering ,Electrical and Electronic Engineering ,Materials Engineering - Abstract
Liquid organic hydrogen carriers will likely be a key element of a future hydrogen economy by enabling the storage and transport of large quantities of hydrogen. Ethanol is a liquid organic hydrogen carrier that is readily available from biological resources, which undergoes a reversible reaction to yield hydrogen and ethyl acetate. The objective of the present study is to obtain a better understanding of the thermodynamic and environmental suitability of the ethanol–ethyl acetate cycle for hydrogen storage applications. The analysis covers three aspects: thermodynamics of the chemical reaction, energy balance of the process, and a first-order assessment of greenhouse gas emissions. Thermodynamics of the reaction are characterized by a standard Gibbs energy of reaction close to zero which allows the reaction to be shifted between hydrogenation and dehydrogenation within a moderate window of temperature and pressure conditions. The energy demand for dehydrogenation is comparatively small, resulting in an overall system efficiency of 88%. A life cycle greenhouse gas analysis over a 20-year storage system lifetime gives a carbon intensity of 7.0 kg-CO2eq/kg-H2 delivered. These results indicate that the ethanol–ethyl acetate system has considerable promise as a hydrogen carrier and should be the subject of further research.
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- 2023
219. Cost-Effective Decision-Making for California's School System
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Stanford University, Policy Analysis for California Education (PACE), Belfield, Clive R., Brooks Bowden, A., and Shand, Robert S.
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California's school system is under tremendous long-run fiscal pressure; allocating resources efficiently is therefore paramount. Economic analysis--making sure districts and schools are spending their budgets wisely--is the method used to identify effectiveness and efficiency. This method responds to the question educational professionals face: "Am I making the most efficient decisions given the resources I have and the goals I need to meet for my students?" In this report, the authors look at the role of economic analysis in decision-making in California's school system. The goal is to show how economic evaluations can be more straightforward, more useful, and more influential for decision-making. The authors describe cost-effectiveness analysis (CEA), one of the primary methods for economic evaluation. They provide a summary of this method, along with templates for framing the research analysis. The authors include a worked-through example to illustrate the key steps in performing CEA. They also describe case studies where such analyses have been performed that show the broad applicability of the method. [This report was written in partnership with Center for Benefit-Cost Studies in Education, Teachers College, Columbia University.]
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- 2021
220. Genetic diversity fuels gene discovery for tobacco and alcohol use
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Saunders, Gretchen RB, Wang, Xingyan, Chen, Fang, Jang, Seon-Kyeong, Liu, Mengzhen, Wang, Chen, Gao, Shuang, Jiang, Yu, Khunsriraksakul, Chachrit, Otto, Jacqueline M, Addison, Clifton, Akiyama, Masato, Albert, Christine M, Aliev, Fazil, Alonso, Alvaro, Arnett, Donna K, Ashley-Koch, Allison E, Ashrani, Aneel A, Barnes, Kathleen C, Barr, R Graham, Bartz, Traci M, Becker, Diane M, Bielak, Lawrence F, Benjamin, Emelia J, Bis, Joshua C, Bjornsdottir, Gyda, Blangero, John, Bleecker, Eugene R, Boardman, Jason D, Boerwinkle, Eric, Boomsma, Dorret I, Boorgula, Meher Preethi, Bowden, Donald W, Brody, Jennifer A, Cade, Brian E, Chasman, Daniel I, Chavan, Sameer, Chen, Yii-Der Ida, Chen, Zhengming, Cheng, Iona, Cho, Michael H, Choquet, Hélène, Cole, John W, Cornelis, Marilyn C, Cucca, Francesco, Curran, Joanne E, de Andrade, Mariza, Dick, Danielle M, Docherty, Anna R, Duggirala, Ravindranath, Eaton, Charles B, Ehringer, Marissa A, Esko, Tõnu, Faul, Jessica D, Fernandes Silva, Lilian, Fiorillo, Edoardo, Fornage, Myriam, Freedman, Barry I, Gabrielsen, Maiken E, Garrett, Melanie E, Gharib, Sina A, Gieger, Christian, Gillespie, Nathan, Glahn, David C, Gordon, Scott D, Gu, Charles C, Gu, Dongfeng, Gudbjartsson, Daniel F, Guo, Xiuqing, Haessler, Jeffrey, Hall, Michael E, Haller, Toomas, Harris, Kathleen Mullan, He, Jiang, Herd, Pamela, Hewitt, John K, Hickie, Ian, Hidalgo, Bertha, Hokanson, John E, Hopfer, Christian, Hottenga, JoukeJan, Hou, Lifang, Huang, Hongyan, Hung, Yi-Jen, Hunter, David J, Hveem, Kristian, Hwang, Shih-Jen, Hwu, Chii-Min, Iacono, William, Irvin, Marguerite R, Jee, Yon Ho, Johnson, Eric O, Joo, Yoonjung Y, Jorgenson, Eric, Justice, Anne E, Kamatani, Yoichiro, Kaplan, Robert C, Kaprio, Jaakko, Kardia, Sharon LR, and Keller, Matthew C
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Genetics ,Alcoholism ,Alcohol Use and Health ,Prevention ,Human Genome ,Substance Misuse ,Aetiology ,2.1 Biological and endogenous factors ,Cancer ,Good Health and Well Being ,Humans ,Genetic Predisposition to Disease ,Genetic Variation ,Genome-Wide Association Study ,Multifactorial Inheritance ,Risk Factors ,Tobacco Use ,Alcohol Drinking ,Transcriptome ,Sample Size ,Genetic Loci ,Internationality ,Europe ,23andMe Research Team ,Biobank Japan Project ,General Science & Technology - Abstract
Tobacco and alcohol use are heritable behaviours associated with 15% and 5.3% of worldwide deaths, respectively, due largely to broad increased risk for disease and injury1-4. These substances are used across the globe, yet genome-wide association studies have focused largely on individuals of European ancestries5. Here we leveraged global genetic diversity across 3.4 million individuals from four major clines of global ancestry (approximately 21% non-European) to power the discovery and fine-mapping of genomic loci associated with tobacco and alcohol use, to inform function of these loci via ancestry-aware transcriptome-wide association studies, and to evaluate the genetic architecture and predictive power of polygenic risk within and across populations. We found that increases in sample size and genetic diversity improved locus identification and fine-mapping resolution, and that a large majority of the 3,823 associated variants (from 2,143 loci) showed consistent effect sizes across ancestry dimensions. However, polygenic risk scores developed in one ancestry performed poorly in others, highlighting the continued need to increase sample sizes of diverse ancestries to realize any potential benefit of polygenic prediction.
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- 2022
221. Drug repurposing screen targeting PARP identifies cytotoxic activity of efavirenz in high-grade serous ovarian cancer
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Matthews, Bayley, Wong-Brown, Michelle, Liu, Dongli, Yee, Christine, Dickson, Kristie-Ann, Schneider, Jennifer, Islam, Saiful, Head, Richard, Martin, Jennifer H., Ford, Caroline E., Marsh, Deborah J., and Bowden, Nikola A.
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- 2024
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222. A framework for detecting noncoding rare-variant associations of large-scale whole-genome sequencing studies
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Li, Zilin, Li, Xihao, Zhou, Hufeng, Gaynor, Sheila M, Selvaraj, Margaret Sunitha, Arapoglou, Theodore, Quick, Corbin, Liu, Yaowu, Chen, Han, Sun, Ryan, Dey, Rounak, Arnett, Donna K, Auer, Paul L, Bielak, Lawrence F, Bis, Joshua C, Blackwell, Thomas W, Blangero, John, Boerwinkle, Eric, Bowden, Donald W, Brody, Jennifer A, Cade, Brian E, Conomos, Matthew P, Correa, Adolfo, Cupples, L Adrienne, Curran, Joanne E, de Vries, Paul S, Duggirala, Ravindranath, Franceschini, Nora, Freedman, Barry I, Göring, Harald HH, Guo, Xiuqing, Kalyani, Rita R, Kooperberg, Charles, Kral, Brian G, Lange, Leslie A, Lin, Bridget M, Manichaikul, Ani, Manning, Alisa K, Martin, Lisa W, Mathias, Rasika A, Meigs, James B, Mitchell, Braxton D, Montasser, May E, Morrison, Alanna C, Naseri, Take, O’Connell, Jeffrey R, Palmer, Nicholette D, Peyser, Patricia A, Psaty, Bruce M, Raffield, Laura M, Redline, Susan, Reiner, Alexander P, Reupena, Muagututi’a Sefuiva, Rice, Kenneth M, Rich, Stephen S, Smith, Jennifer A, Taylor, Kent D, Taub, Margaret A, Vasan, Ramachandran S, Weeks, Daniel E, Wilson, James G, Yanek, Lisa R, Zhao, Wei, Rotter, Jerome I, Willer, Cristen J, Natarajan, Pradeep, Peloso, Gina M, and Lin, Xihong
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Biological Sciences ,Genetics ,Precision Medicine ,Biotechnology ,Human Genome ,2.1 Biological and endogenous factors ,Good Health and Well Being ,Humans ,Genome-Wide Association Study ,Whole Genome Sequencing ,Genome ,Phenotype ,Genetic Variation ,NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium ,TOPMed Lipids Working Group ,Technology ,Medical and Health Sciences ,Developmental Biology ,Biological sciences - Abstract
Large-scale whole-genome sequencing studies have enabled analysis of noncoding rare-variant (RV) associations with complex human diseases and traits. Variant-set analysis is a powerful approach to study RV association. However, existing methods have limited ability in analyzing the noncoding genome. We propose a computationally efficient and robust noncoding RV association detection framework, STAARpipeline, to automatically annotate a whole-genome sequencing study and perform flexible noncoding RV association analysis, including gene-centric analysis and fixed window-based and dynamic window-based non-gene-centric analysis by incorporating variant functional annotations. In gene-centric analysis, STAARpipeline uses STAAR to group noncoding variants based on functional categories of genes and incorporate multiple functional annotations. In non-gene-centric analysis, STAARpipeline uses SCANG-STAAR to incorporate dynamic window sizes and multiple functional annotations. We apply STAARpipeline to identify noncoding RV sets associated with four lipid traits in 21,015 discovery samples from the Trans-Omics for Precision Medicine (TOPMed) program and replicate several of them in an additional 9,123 TOPMed samples. We also analyze five non-lipid TOPMed traits.
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- 2022
223. Effects of the organochlorine pesticide metabolite p,p’-DDE on the gastrointestinal lipidome in fish: A novel toxicity pathway for a legacy pollutant
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Wormington, Alexis M., Gabrielli, David J., Nouri, Mohammad-Zaman, Lin, Ashley M., Robinson, Sarah E., Bowden, John A., Denslow, Nancy D., Sabo-Attwood, Tara, and Bisesi, Joseph H., Jr.
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- 2024
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224. Evaluating ecosystem services in urban salt marshes: Assessing vulnerability to sea-level rise and implications for coastal management
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Alemu I, Jahson B., Ofsthun, Conor, Medley, Grace, Bowden, Alison, Cammett, Alex, Gildesgame, Emma, Munoz, Samuel E., Stubbins, Aron, and Randall Hughes, A.
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- 2024
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225. Performance of large-scale [formula omitted]Li-doped pulse-shape discriminating plastic scintillators
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Roca, C., Bowden, N.S., Carman, L., Dazeley, S.A., Durham, S.R., Falana, O.M., Ford, M.J., Glenn, A.M., Hurlbut, C., Li, V.A., Mendenhall, M.P., Shipp, K., Sutanto, F., and Zaitseva, N.P.
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- 2024
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226. The effectiveness of the Conversation Analytic Role-Play Method (CARM) on teachers' and classroom assistants' self-efficacy and interactional awareness: Identifying and responding to aided-speaking students’ questions in whole class interaction
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Tegler, Helena, Bowden, Helen Melander, Skovholt, Karianne, and Sikveland, Rein Ove
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- 2025
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227. Towards deciphering the bone marrow microenvironment with spatial multi-omics
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Yip, Raymond K.H., Hawkins, Edwin D., Bowden, Rory, and Rogers, Kelly L.
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- 2025
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228. Maximising the management of self-harm in schools: A collaborative, implementation science approach by secondary schools and child and adolescent mental health services
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Bowden, L., Hetrick, S.E., Cargo, T., Woodfield, M., Meinhardt, I., Clark, T.C., and Fortune, S.
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- 2025
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229. Metaverse platform attributes and customer experience measurement
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Rahman, Syed Mahmudur, Chowdhury, Noman H., Bowden, Jana Lay-Hwa, and Carlson, Jamie
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- 2025
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230. Advancing Parkinson’s Disease Diagnostics: The Potential of Arylpyrazolethiazole Derivatives for Imaging α‑Synuclein Aggregates
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Federica Bonanno, Ran Sing Saw, Daniel Bleher, Ioannis Papadopoulos, Gregory D. Bowden, Kaare Bjerregaard-Andersen, Albert D. Windhorst, Bernd J. Pichler, Kristina Herfert, and Andreas Maurer
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Chemistry ,QD1-999 - Published
- 2024
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231. A fluid biomarker reveals loss of TDP-43 splicing repression in presymptomatic ALS–FTD
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Irwin, Katherine E., Jasin, Pei, Braunstein, Kerstin E., Sinha, Irika R., Garret, Mark A., Bowden, Kyra D., Chang, Koping, Troncoso, Juan C., Moghekar, Abhay, Oh, Esther S., Raitcheva, Denitza, Bartlett, Dan, Miller, Timothy, Berry, James D., Traynor, Bryan J., Ling, Jonathan P., and Wong, Philip C.
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- 2024
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232. Automated human induced pluripotent stem cell culture and sample preparation for 3D live-cell microscopy
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Gregor, Benjamin W., Coston, Mackenzie E., Adams, Ellen M., Arakaki, Joy, Borensztejn, Antoine, Do, Thao P., Fuqua, Margaret A., Haupt, Amanda, Hendershott, Melissa C., Leung, Winnie, Mueller, Irina A., Nath, Aditya, Nelson, Angelique M., Rafelski, Susanne M., Sanchez, Emmanuel E., Swain-Bowden, Madison J., Tang, W. Joyce, Thirstrup, Derek J., Wiegraebe, Winfried, Whitney, Brian P., Yan, Calysta, Gunawardane, Ruwanthi N., and Gaudreault, Nathalie
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- 2024
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233. Memory benefits when actively, rather than passively, viewing images
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Kennedy, Briana L., Most, Steven B., Grootswagers, Tijl, and Bowden, Vanessa K.
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- 2024
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234. Associations between type 1 diabetes and educational outcomes: an Aotearoa/New Zealand nationwide birth cohort study using the Integrated Data Infrastructure
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Bowden, Nicholas, Dixon, Rachael, Anderson, Vivienne, de Bock, Martin, Boucsein, Alisa, Kewene-Edwards, Maria, Gibb, Sheree, Kokaua, Jesse, Palmer, Octavia, Paul, Ryan, Taylor, Barry, Vu, Hien, and Wheeler, Benjamin J.
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- 2024
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235. Linking distributed and integrated fiber-optic sensing
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Bowden, Daniel C., Fichtner, Andreas, Nikas, Thomas, Bogris, Adonis, Simos, Christos, Smolinski, Krystyna, Koroni, Maria, Lentas, Konstantinos, Simos, Iraklis, and Melis, Nikolaos S.
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Physics - Geophysics - Abstract
Distributed Acoustic Sensing (DAS) has become a popular method of observing seismic wavefields: backscattered pulses of light reveal strains or strain-rates at any location along a fiber-optic cable. In contrast, a few newer systems transmit light through a cable and collect integrated phase delays over the entire cable, such as the Microwave Frequency Fiber Interferometer (MFFI). These integrated systems can be deployed over significantly longer distances, may be used in conjunction with live telecommunications, and can be significantly cheaper. However, they provide only a single time series representing strain over the entire length of fiber. This work discusses theoretically how a distributed and integrated system can be quantitatively compared, and we note that the sensitivity depends strongly on points of curvature. Importantly, this work presents the first results of a quantitative, head-to-head comparison of a DAS and the integrated MFFI system using pre-existing telecommunications fibers in Athens, Greece., Comment: Submitted to Geophysical Research Letters. 12 pages, 5 figures
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- 2022
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236. Failing to hash into supersingular isogeny graphs
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Booher, Jeremy, Bowden, Ross, Doliskani, Javad, Fouotsa, Tako Boris, Galbraith, Steven D., Kunzweiler, Sabrina, Merz, Simon-Philipp, Petit, Christophe, Smith, Benjamin, Stange, Katherine E., Ti, Yan Bo, Vincent, Christelle, Voloch, José Felipe, Weitkämper, Charlotte, and Zobernig, Lukas
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Mathematics - Number Theory ,Computer Science - Cryptography and Security ,11G05, 11T71, 14G50, 14K02, 81P94, 94A60, 68Q12 - Abstract
An important open problem in supersingular isogeny-based cryptography is to produce, without a trusted authority, concrete examples of "hard supersingular curves" that is, equations for supersingular curves for which computing the endomorphism ring is as difficult as it is for random supersingular curves. A related open problem is to produce a hash function to the vertices of the supersingular $\ell$-isogeny graph which does not reveal the endomorphism ring, or a path to a curve of known endomorphism ring. Such a hash function would open up interesting cryptographic applications. In this paper, we document a number of (thus far) failed attempts to solve this problem, in the hope that we may spur further research, and shed light on the challenges and obstacles to this endeavour. The mathematical approaches contained in this article include: (i) iterative root-finding for the supersingular polynomial; (ii) gcd's of specialized modular polynomials; (iii) using division polynomials to create small systems of equations; (iv) taking random walks in the isogeny graph of abelian surfaces; and (v) using quantum random walks., Comment: 34 pages, 8 figures
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- 2022
237. Medusa: Universal Feature Learning via Attentional Multitasking
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Spencer, Jaime, Bowden, Richard, and Hadfield, Simon
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Computer Science - Machine Learning - Abstract
Recent approaches to multi-task learning (MTL) have focused on modelling connections between tasks at the decoder level. This leads to a tight coupling between tasks, which need retraining if a new task is inserted or removed. We argue that MTL is a stepping stone towards universal feature learning (UFL), which is the ability to learn generic features that can be applied to new tasks without retraining. We propose Medusa to realize this goal, designing task heads with dual attention mechanisms. The shared feature attention masks relevant backbone features for each task, allowing it to learn a generic representation. Meanwhile, a novel Multi-Scale Attention head allows the network to better combine per-task features from different scales when making the final prediction. We show the effectiveness of Medusa in UFL (+13.18% improvement), while maintaining MTL performance and being 25% more efficient than previous approaches., Comment: Accepted @ CVPRW 2022 (CLVision, 3rd Edition)
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- 2022
238. 'The Pedestrian next to the Lamppost' Adaptive Object Graphs for Better Instantaneous Mapping
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Saha, Avishkar, Mendez, Oscar, Russell, Chris, and Bowden, Richard
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Computer Science - Computer Vision and Pattern Recognition - Abstract
Estimating a semantically segmented bird's-eye-view (BEV) map from a single image has become a popular technique for autonomous control and navigation. However, they show an increase in localization error with distance from the camera. While such an increase in error is entirely expected - localization is harder at distance - much of the drop in performance can be attributed to the cues used by current texture-based models, in particular, they make heavy use of object-ground intersections (such as shadows), which become increasingly sparse and uncertain for distant objects. In this work, we address these shortcomings in BEV-mapping by learning the spatial relationship between objects in a scene. We propose a graph neural network which predicts BEV objects from a monocular image by spatially reasoning about an object within the context of other objects. Our approach sets a new state-of-the-art in BEV estimation from monocular images across three large-scale datasets, including a 50% relative improvement for objects on nuScenes., Comment: Accepted to CVPR 2022
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- 2022
239. Signing at Scale: Learning to Co-Articulate Signs for Large-Scale Photo-Realistic Sign Language Production
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Saunders, Ben, Camgoz, Necati Cihan, and Bowden, Richard
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Computer Science - Computer Vision and Pattern Recognition - Abstract
Sign languages are visual languages, with vocabularies as rich as their spoken language counterparts. However, current deep-learning based Sign Language Production (SLP) models produce under-articulated skeleton pose sequences from constrained vocabularies and this limits applicability. To be understandable and accepted by the deaf, an automatic SLP system must be able to generate co-articulated photo-realistic signing sequences for large domains of discourse. In this work, we tackle large-scale SLP by learning to co-articulate between dictionary signs, a method capable of producing smooth signing while scaling to unconstrained domains of discourse. To learn sign co-articulation, we propose a novel Frame Selection Network (FS-Net) that improves the temporal alignment of interpolated dictionary signs to continuous signing sequences. Additionally, we propose SignGAN, a pose-conditioned human synthesis model that produces photo-realistic sign language videos direct from skeleton pose. We propose a novel keypoint-based loss function which improves the quality of synthesized hand images. We evaluate our SLP model on the large-scale meineDGS (mDGS) corpus, conducting extensive user evaluation showing our FS-Net approach improves co-articulation of interpolated dictionary signs. Additionally, we show that SignGAN significantly outperforms all baseline methods for quantitative metrics, human perceptual studies and native deaf signer comprehension., Comment: arXiv admin note: text overlap with arXiv:2011.09846
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- 2022
240. Future Advances in Photon-Based Neutrino Detectors: A SNOWMASS White Paper
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Klein, Joshua R., Akindele, Tomi, Bernstein, Adam, Biller, Steven, Bowden, Nathaniel, Brodsky, Jason, Cowen, D. F., Ford, Michael, Gruszko, Julieta, Lebenowski, Logan, Li, Aobo, Li, Viacheslav A., Mu, Wei, Ochoa-Ricoux, J. Pedro, Gann, Gabriel D. Orebi, Sanchez, Mayly, Svoboda, Robert, Wetstein, Matthew, Wurm, Michael, and Yeh, Minfang
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Physics - Instrumentation and Detectors ,High Energy Physics - Experiment ,Nuclear Experiment - Abstract
We discuss here new, enabling technologies for future photon-based neutrino detectors. These technologies touch nearly every aspect of such detectors: new scintillating materials, new methods of loading isotopes, new photon sensors and collectors, new approaches to simulation and analysis, and new front-end electronics and DAQ ideas. Of particular interest are technologies that enable broad physics programs in hybrid Cherenkov/scintillation detectors, such as slow fluors, water-based liquid scintillator, and spectral sorting of photons. Several new large-scale detector ideas are also discussed, including hybrid detectors like Theia, ArTEMIS, and generic slow-fluor detectors, as well as the very different SLIPs and LiquidO approaches to instrumenting photon-based detectors. A program of demonstrators for future detectors, including ANNIE, Eos, and NuDOT are also discussed.
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- 2022
241. White Paper on Light Sterile Neutrino Searches and Related Phenomenology
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Acero, M. A., Argüelles, C. A., Hostert, M., Kalra, D., Karagiorgi, G., Kelly, K. J., Littlejohn, B., Machado, P., Pettus, W., Toups, M., Ross-Lonergan, M., Sousa, A., Surukuchi, P. T., Wong, Y. Y. Y., Abdallah, W., Abdullahi, A. M., Akutsu, R., Alvarez-Ruso, L., Alves, D. S. M., Aurisano, A., Balantekin, A. B., Berryman, J. M., Bertólez-Martínez, T., Brunner, J., Blennow, M., Bolognesi, S., Borusinski, M., Cianci, D., Collin, G., Conrad, J. M., Crow, B., Denton, P. B., Duvall, M., Fernández-Martinez, E., Fong, C. S., Foppiani, N., Forero, D. V., Friend, M., García-Soto, A., Giganti, C., Giunti, C., Gandhi, R., Ghosh, M., Hardin, J., Heeger, K. M., Ishitsuka, M., Izmaylov, A., Jones, B. J. P., Jordan, J. R., Kamp, N. W., Katori, T., Kim, S. B., Koerner, L. W., Lamoureux, M., Lasserre, T., Leach, K. G., Learned, J., Li, Y. F., Link, J. M., Louis, W. C., Mahn, K., Meyers, P. D., Maricic, J., Marko, D., Maruyama, T., Mertens, S., Minakata, H., Mocioiu, I., Mooney, M., Moulai, M. H., Nunokawa, H., Ochoa-Ricoux, J. P., Oh, Y. M., Ohlsson, T., Päs, H., Pershey, D., Robertson, R. G. H., Rosauro-Alcaraz, S., Rott, C., Roy, S., Salvado, J., Scott, M., Seo, S. H., Shaevitz, M. H., Smiley, M., Spitz, J., Stachurska, J., Thakore, T., Ternes, C. A., Thompson, A., Tseng, S., Vogelaar, B., Weiss, T., Wendell, R. A., Wright, T., Xin, Z., Yang, B. S., Yoo, J., Zennamo, J., Zettlemoyer, J., Zornoza, J. D., Ahmad, S., Basto-Gonzalez, V. S., Bowden, N. S., Cañas, B. C., Caratelli, D., Chang, C. V., Chen, C., Classen, T., Convery, M., Davies, G. S., Dennis, S. R., Djurcic, Z., Dorrill, R., Du, Y., Evans, J. J., Fahrendholz, U., Formaggio, J. A., Foust, B. T., Gatti, H. Frandini, Garcia-Gamez, D., Gariazzo, S., Gehrlein, J., Grant, C., Gomes, R. A., Hansell, A. B., Halzen, F., Ho, S., Zink, J. Hoefken, Jones, R. S., Kunkle, P., Li, J. -Y., Li, S. C., Luo, X., Malyshkin, Yu., Massaro, D., Mastbaum, A., Mohanta, R., Mumm, H. P., Nebot-Guinot, M., Neilson, R., Ni, K., Nieves, J., Gann, G. D. Orebi, Pandey, V., Pascoli, S., Qian, X., Rajaoalisoa, M., Roca, C., Roskovec, B., Saul-Sala, E., Saldaña, L., Scholberg, K., Shakya, B., Slocum, P. L., Snider, E. L., Steiger, H. Th. J., Steklain, A. F., Stock, M. R., Sutanto, F., Takhistov, V., Tsai, Y. -D., Tsai, Y. -T., Venegas-Vargas, D., Wallbank, M., Wang, E., Weatherly, P., Westerdale, S., Worcester, E., Wu, W., Yang, G., and Zamorano, B.
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High Energy Physics - Experiment ,Astrophysics - Cosmology and Nongalactic Astrophysics ,High Energy Physics - Phenomenology ,Physics - Instrumentation and Detectors - Abstract
This white paper provides a comprehensive review of our present understanding of experimental neutrino anomalies that remain unresolved, charting the progress achieved over the last decade at the experimental and phenomenological level, and sets the stage for future programmatic prospects in addressing those anomalies. It is purposed to serve as a guiding and motivational "encyclopedic" reference, with emphasis on needs and options for future exploration that may lead to the ultimate resolution of the anomalies. We see the main experimental, analysis, and theory-driven thrusts that will be essential to achieving this goal being: 1) Cover all anomaly sectors -- given the unresolved nature of all four canonical anomalies, it is imperative to support all pillars of a diverse experimental portfolio, source, reactor, decay-at-rest, decay-in-flight, and other methods/sources, to provide complementary probes of and increased precision for new physics explanations; 2) Pursue diverse signatures -- it is imperative that experiments make design and analysis choices that maximize sensitivity to as broad an array of these potential new physics signatures as possible; 3) Deepen theoretical engagement -- priority in the theory community should be placed on development of standard and beyond standard models relevant to all four short-baseline anomalies and the development of tools for efficient tests of these models with existing and future experimental datasets; 4) Openly share data -- Fluid communication between the experimental and theory communities will be required, which implies that both experimental data releases and theoretical calculations should be publicly available; and 5) Apply robust analysis techniques -- Appropriate statistical treatment is crucial to assess the compatibility of data sets within the context of any given model., Comment: Contribution to Snowmass 2021 by the NF02 Topical Group (Understanding Experimental Neutrino Anomalies). Published in J. Phys. G as a Major Report
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- 2022
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242. High Energy Physics Opportunities Using Reactor Antineutrinos
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Akindele, O. A., Berryman, J. M., Bowden, N. S., Carr, R., Conant, A. J., Huber, P., Langford, T. J., Link, J. M., Littlejohn, B. R., Fernandez-Moroni, G., Ochoa-Ricoux, J. P., Roca, C., Schoppmann, S., Strigari, L., Xu, J., Zhang, C., and Zhang, X.
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High Energy Physics - Experiment - Abstract
Nuclear reactors are uniquely powerful, abundant, and flavor-pure sources of antineutrinos that continue to play a vital role in the US neutrino physics program. The US reactor antineutrino physics community is a diverse interest group encompassing many detection technologies and many particle physics topics, including Standard Model and short-baseline oscillations, BSM physics searches, and reactor flux and spectrum modeling. The community's aims offer strong complimentary with numerous aspects of the wider US neutrino program and have direct relevance to most of the topical sub-groups composing the Snowmass 2021 Neutrino Frontier. Reactor neutrino experiments also have a direct societal impact and have become a strong workforce and technology development pipeline for DOE National Laboratories and universities. This white paper, prepared as a submission to the Snowmass 2021 community organizing exercise, will survey the state of the reactor antineutrino physics field and summarize the ways in which current and future reactor antineutrino experiments can play a critical role in advancing the field of particle physics in the next decade., Comment: Contribution to Snowmass 2021
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- 2022
243. Sensitivity kernels for transmission fiber optics
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Fichtner, Andreas, Bogris, Adonis, Bowden, Daniel, Lentas, Konstantinos, Melis, Nicos, Nikas, Thomas, Simos, Christos, abd, Iraklis Simos, and Smolinski, Krystyna
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Physics - Geophysics - Abstract
Fiber-optic sensing technologies based on transmission offer an alternative to scattering-based Distributed Acoustic Sensing (DAS). Being able to interrogate fibers that are thousands of kilometers long, opens opportunities for seismological studies of remote regions, including ocean basins. However, by averaging deformation along the fiber, transmission systems only produce integrated and not distributed measurements. Here we develop a formalism to calculate sensitivity kernels with respect to (Earth) structure, using optical phase delay measurements. With this, we demonstrate that transmission-based sensing can effectively provide distributed measurements when the phase delay time series is dissected into different windows. The extent to which a potentially useful sensitivity coverage can be achieved, depends on the fiber geometry, and specifically on its local curvature. This work establishes a theoretical foundation for both tomographic inversions and experimental design, using transmission-based optical sensing., Comment: 5 pages, 4 figures
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- 2022
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244. Passive low energy nuclear recoil detection with color centers -- PALEOCCENE
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Alfonso, Krystal, Araujo, Gabriela R., Baudis, Laura, Bowden, Nathaniel, Cogswell, Bernadette K., Erickson, Anna, Galloway, Michelle, Hecht, Adam A., Mudiyanselage, Rathsara R. H. Herath, Huber, Patrick, Jovanovic, Igor, Khodaparast, Giti A., Magill, Brenden A., O'Donnell, Thomas, Smith, Nicholas W. G., and Zhang, Xianyi
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High Energy Physics - Experiment - Abstract
The PALEOCCENE concept offers the potential for room-temperature, passive and robust detectors in the gram to kilogram range for the detection of low-energy nuclear recoil events. Nuclear recoil events can be caused by neutron scattering, coherent elastic neutrino nucleus scattering (CEvNS) or dark matter scattering and therefore, PALEOCCENE could find applications in all three areas. In this white paper we present current and planned R&D efforts to study the feasibility of this technique., Comment: 22 pages, 6 figures, comments welcome. White paper contribution to Snowmass 2021
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- 2022
245. Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R and GenePattern Notebook implementations of CoGAPS
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Johnson, Jeanette A. I., Tsang, Ashley P., Mitchell, Jacob T., Zhou, David L., Bowden, Julia, Davis-Marcisak, Emily, Sherman, Thomas, Liefeld, Ted, Loth, Melanie, Goff, Loyal A., Zimmerman, Jacquelyn W., Kinny-Köster, Ben, Jaffee, Elizabeth M., Tamayo, Pablo, Mesirov, Jill P., Reich, Michael, Fertig, Elana J., and Stein-O’Brien, Genevieve L.
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- 2023
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246. Analyzing and Modeling the Dynamic Electrical Characteristics of Nanocomposite Large-Range Strain Gauges
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Alex M. Wonnacott, Anton E. Bowden, Ulrike H. Mitchell, and David T. Fullwood
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nanocomposites ,viscoelasticity ,high-deflection strain gauges ,modeling ,Chemical technology ,TP1-1185 - Abstract
Flexible high-deflection strain gauges have been demonstrated to be cost-effective and accessible sensors for capturing human biomechanical deformations. However, the interpretation of these sensors is notably more complex compared to conventional strain gauges, particularly during dynamic motion. In addition to the non-linear viscoelastic behavior of the strain gauge material itself, the dynamic response of the sensors is even more difficult to capture due to spikes in the resistance during strain path changes. Hence, models for extracting strain from resistance measurements of the gauges most often only work well under quasi-static conditions. The present work develops a novel model that captures the complete dynamic strain–resistance relationship of the sensors, including resistance spikes, during cyclical movements. The forward model, which converts strain to resistance, comprises the following four parts to accurately capture the different aspects of the sensor response: a quasi-static linear model, a spike magnitude model, a long-term creep decay model, and a short-term decay model. The resulting sensor-specific model accurately predicted the resistance output, with an R-squared value of 0.90. Additionally, an inverse model which predicts the strain vs. time data that would result in the observed resistance data was created. The inverse model was calibrated for a particular sensor from a small amount of cyclic data during a single test. The inverse model accurately predicted key strain characteristics with a percent error as low as 0.5%. Together, the models provide new functionality for interpreting high-deflection strain sensors during dynamic strain measurement applications, including wearables sensors used for biomechanical modeling and analysis.
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- 2024
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247. Empirical Support for Establishing Common Assumptions in Cost Research in Education
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Shand, Robert and Bowden, A. Brooks
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The economic evaluation of educational policies and programs employing the ingredients method for cost, cost-effectiveness, or benefit-cost analysis is no exception to the critique that economic models require an untenable number of assumptions. Educational economists must make assumptions due to two sources of uncertainty: model uncertainty, as in the well-documented debate over the selection of the appropriate social discount rate to calculate present value and empirical uncertainty due to the infeasibility of gathering sufficiently detailed data on all resources. This paper highlights the frequency of empirical assumptions made in the education literature and proposes a set of harmonized assumptions to address empirical uncertainty that can be used to increase comparability of economic evaluation across programs and across studies. By building consensus on a set of reasonable, empirically derived assumptions that are selected so as to minimally distort the results of evaluations, differences in costs, cost effectiveness, and benefit-cost ratios can be more confidently ascribed to meaningful differences in resource use, program implementation, and program effectiveness, as opposed to differences in choices made by the analyst. [This is the online version of an article published in "Journal of Research on Educational Effectiveness."]
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- 2021
248. Rare genetic variants explain missing heritability in smoking.
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Jang, Seon-Kyeong, Evans, Luke, Fialkowski, Allison, Arnett, Donna K, Ashley-Koch, Allison E, Barnes, Kathleen C, Becker, Diane M, Bis, Joshua C, Blangero, John, Bleecker, Eugene R, Boorgula, Meher Preethi, Bowden, Donald W, Brody, Jennifer A, Cade, Brian E, Jenkins, Brenda W Campbell, Carson, April P, Chavan, Sameer, Cupples, L Adrienne, Custer, Brian, Damrauer, Scott M, David, Sean P, de Andrade, Mariza, Dinardo, Carla L, Fingerlin, Tasha E, Fornage, Myriam, Freedman, Barry I, Garrett, Melanie E, Gharib, Sina A, Glahn, David C, Haessler, Jeffrey, Heckbert, Susan R, Hokanson, John E, Hou, Lifang, Hwang, Shih-Jen, Hyman, Matthew C, Judy, Renae, Justice, Anne E, Kaplan, Robert C, Kardia, Sharon LR, Kelly, Shannon, Kim, Wonji, Kooperberg, Charles, Levy, Daniel, Lloyd-Jones, Donald M, Loos, Ruth JF, Manichaikul, Ani W, Gladwin, Mark T, Martin, Lisa Warsinger, Nouraie, Mehdi, Melander, Olle, Meyers, Deborah A, Montgomery, Courtney G, North, Kari E, Oelsner, Elizabeth C, Palmer, Nicholette D, Payton, Marinelle, Peljto, Anna L, Peyser, Patricia A, Preuss, Michael, Psaty, Bruce M, Qiao, Dandi, Rader, Daniel J, Rafaels, Nicholas, Redline, Susan, Reed, Robert M, Reiner, Alexander P, Rich, Stephen S, Rotter, Jerome I, Schwartz, David A, Shadyab, Aladdin H, Silverman, Edwin K, Smith, Nicholas L, Smith, J Gustav, Smith, Albert V, Smith, Jennifer A, Tang, Weihong, Taylor, Kent D, Telen, Marilyn J, Vasan, Ramachandran S, Gordeuk, Victor R, Wang, Zhe, Wiggins, Kerri L, Yanek, Lisa R, Yang, Ivana V, Young, Kendra A, Young, Kristin L, Zhang, Yingze, Liu, Dajiang J, Keller, Matthew C, and Vrieze, Scott
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Smoking ,Gene Frequency ,Phenotype ,Polymorphism ,Single Nucleotide ,Genome-Wide Association Study ,Tobacco ,Genetics ,Tobacco Smoke and Health ,Human Genome ,Cancer - Abstract
Common genetic variants explain less variation in complex phenotypes than inferred from family-based studies, and there is a debate on the source of this 'missing heritability'. We investigated the contribution of rare genetic variants to tobacco use with whole-genome sequences from up to 26,257 unrelated individuals of European ancestries and 11,743 individuals of African ancestries. Across four smoking traits, single-nucleotide-polymorphism-based heritability ([Formula: see text]) was estimated from 0.13 to 0.28 (s.e., 0.10-0.13) in European ancestries, with 35-74% of it attributable to rare variants with minor allele frequencies between 0.01% and 1%. These heritability estimates are 1.5-4 times higher than past estimates based on common variants alone and accounted for 60% to 100% of our pedigree-based estimates of narrow-sense heritability ([Formula: see text], 0.18-0.34). In the African ancestry samples, [Formula: see text] was estimated from 0.03 to 0.33 (s.e., 0.09-0.14) across the four smoking traits. These results suggest that rare variants are important contributors to the heritability of smoking.
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- 2022
249. A Mixed-Methods Approach for Embedding Cost Analysis within Fidelity Assessment in School-Based Programs
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Bradshaw, Catherine P., Debnam, Katrina J., Player, Daniel, Bowden, Brooks, and Lindstrom Johnson, Sarah
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This mixed-methods study describes a framework for conducting cost analyses of school-based programs leveraging fidelity data and applying the ingredients method. We illustrate this approach by applying it to Positive Behavioral Interventions and Supports (PBIS), drawing on multiple sources of data from a sample of U.S. 77 schools that were trained in PBIS. We concluded that the average per school cost of PBIS was US$53,216.00 (median = US$36,698), with an average per-pupil cost of US$90.00 (median = US$58.00), which is considerably less than other school-based prevention models. The cost did, however, differ by implementation level, such that high-fidelity implementation tended to cost more than low-fidelity implementation. We provide a case illustration to elucidate some of the cost drivers of PBIS implementation. Specifically, these data highlight the variability in the amount of training and coaching by the specific evidence-based program implemented within the tiered PBIS framework. Through this case illustration, we demonstrate the utility of tracking costs of school-based program within the context of fidelity data collection. The findings also suggest the potential cost savings of PBIS, both when compared with other evidence-based interventions as well as the known costs of negative school outcomes like dropout.
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- 2023
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250. Spanish L2 Development in a Short-Term Domestic Immersion Program
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Moranski, Kara, Godoy-Peñas, Juan, Issa, Bernard, Faretta-Stutenberg, Mandy, and Wood Bowden, Harriet
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This exploratory study evaluated the impact of a Spanish second language (L2) domestic immersion (DI) program that was developed expediently at a large university in the United States in response to widespread study abroad (SA) program closures due to COVID-19. Spanish language learners (n = 14) participated in an intensive, six-week summer immersion program for a total of 96 contact hours over the duration of the program. L2 development was evaluated via a conceptual replication of Issa et al. (2020), which recently provided compelling evidence of the benefits of short-term SA programs. L2 gains were measured using an acceptability judgment task, a lexical decision task, and an elicited imitation task. Results showed that DI learners had significant L2 gains in some of the same areas as the SA students, including subject-verb agreement and scores on the elicited imitation task. Implications for creating and maintaining DI programs in the current educational landscape are discussed.
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- 2023
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