151. Semi-quantification of human C-C chemokine mRNAs with reverse transcription/real-time PCR using multi-specific standards
- Author
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Hans Dieter Nischalke, Jürgen K. Rockstroh, Franz Ludwig Dumoulin, Tilman Sauerbruch, Ulrich Spengler, Annette von dem Bussche, and Ludger Leifeld
- Subjects
Chemokine ,Immunology ,Biology ,law.invention ,law ,Transcription (biology) ,Complementary DNA ,Gene expression ,Immunology and Allergy ,Humans ,RNA, Messenger ,Chemokine CCL4 ,Chemokine CCL5 ,Polymerase chain reaction ,Chemokine CCL2 ,Liver Cirrhosis, Biliary ,Reverse Transcriptase Polymerase Chain Reaction ,Hepatitis C, Chronic ,Macrophage Inflammatory Proteins ,Molecular biology ,Reverse transcriptase ,Housekeeping gene ,Real-time polymerase chain reaction ,Liver ,Chemokines, CC ,biology.protein - Abstract
A reverse transcription/real-time polymerase chain reaction (PCR) assay was established to semi-quantify the mRNA levels of the human C-C chemokines RANTES, MIP-1beta and MCP-1 relative to the housekeeping gene beta-actin. The assay showed a high sensitivity (below 60 cDNA molecules/10 microl reaction) and dynamic range (8 log units); both within-assay and inter-assay variability were below 0.06 log units and the accuracy was +/-0.06 log units for all four chemokines. Moreover, it is demonstrated that a multi-specific DNA fragment, which had previously been constructed for competitive PCR, can be used as a reliable external standard. This allows a direct semi-quantitative comparison of different chemokine mRNA levels and is a convenient alternative to the use of different sets of homologous external standards. The method was successfully applied to the semi-quantification of chemokines in human liver specimens and should be useful in further studies on steady state mRNA levels of C-C chemokines from low cell numbers or small tissue specimens.
- Published
- 2000