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Elucidating the role of molecular stochasticity in cellular growth is central to understanding phenotypic heterogeneity and the stability of cellular proliferation. The inherent stochasticity of metabolic reaction events should have negligible effect, because of averaging over the many reaction events contributing to growth. Indeed, metabolism and growth are often considered to be constant for fixed conditions. Stochastic fluctuations in the expression level of metabolic enzymes could produce variations in the reactions they catalyse. However, whether such molecular fluctuations can affect growth is unclear, given the various stabilizing regulatory mechanisms, the slow adjustment of key cellular components such as ribosomes, and the secretion and buffering of excess metabolites. Here we use time-lapse microscopy to measure fluctuations in the instantaneous growth rate of single cells of Escherichia coli, and quantify time-resolved cross-correlations with the expression of lac genes and enzymes in central metabolism. We show that expression fluctuations of catabolically active enzymes can propagate and cause growth fluctuations, with transmission depending on the limitation of the enzyme to growth. Conversely, growth fluctuations propagate back to perturb expression. Accordingly, enzymes were found to transmit noise to other unrelated genes via growth. Homeostasis is promoted by a noise-cancelling mechanism that exploits fluctuations in the dilution of proteins by cell-volume expansion. The results indicate that molecular noise is propagated not only by regulatory proteins but also by metabolic reactions. They also suggest that cellular metabolism is inherently stochastic, and a generic source of phenotypic heterogeneity. [ABSTRACT FROM AUTHOR]

Mesoporous silica particles were prepared for efficient immobilization of the β-glucuronidase (GUS) through a biomimetic mineralization process, in which the solution containing lysozyme and GUS were added into the prehydrolyzed tetraethoxysilane (TEOS) solution. The silica particles were formed in a way of biomineralization under the catalysis of lysozyme and GUS was immobilized into the silica particles simultaneously during the precipitation process. The average diameter of the silica particles is about 200 nm with a pore size of about 4 nm. All the enzyme molecules are tightly entrapped inside the biosilica nanoparticles without any leaching even under a high ionic strength condition. The immobilized GUS exhibits significantly higher thermal and pH stability as well as the storage and recycling stability compared with GUS in free form. No loss in the enzyme activity of the immobilized GUS was found after 30-day's storage, and the initial activity could be well retained after 12 repeated cycles. [ABSTRACT FROM AUTHOR]

An important challenge for scientific research is the production of artificial systems able to mimic the recognition mechanisms occurring at the molecular level in living systems. A valid contribution in this direction resulted from the development of molecular imprinting. By means of this technology, selective molecular recognition sites are introduced in a polymer, thus conferring it bio-mimetic properties. The potential applications of these systems include affinity separations, medical diagnostics, drug delivery, catalysis, etc. Recently, bio-sensing systems using molecularly imprinted membranes, a special form of imprinted polymers, have received the attention of scientists in various fields. In these systems imprinted membranes are used as bio-mimetic recognition elements which are integrated with a transducer component. The direct and rapid determination of an interaction between the recognition element and the target analyte (template) was an encouraging factor for the development of such systems as alternatives to traditional bio-assay methods. Due to their high stability, sensitivity and specificity, bio-mimetic sensors-based membranes are used for environmental, food, and clinical uses. This review deals with the development of molecularly imprinted polymers and their different preparation methods. Referring to the last decades, the application of these membranes as bio-mimetic sensor devices will be also reported. [ABSTRACT FROM AUTHOR]

Copyright of Arabian Journal for Science & Engineering (Springer Science & Business Media B.V. ) is the property of Springer Nature and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)

Genes conferring resistance to antibiotics have been widely used as markers for the selection of transformed cells in the development of genetically modified (GM) plants. Their presence in GM plants released in the environment or used as food or feed has raised concerns over the past years regarding possible risks for human health and the environment. Although these concerns have not been supported so far by scientific evidence, the implementation of selection approaches avoiding the presence of antibiotic resistance marker genes (ARMGs) in the final GM plant is increasingly considered by GM plant developers, not only to alleviate the above-mentioned concerns, but also to circumvent technical limitations associated with the use of ARMGs. In the current paper, we present the results of a three-step analysis of selectable markers and reporter genes as well as methods aiming at developing marker-free GM plants. First, based on a comprehensive review of the scientific literature, technical developments in this domain are presented. Second, a state-of-the-art of the current use of selection approaches is provided based on publicly available information on GM plants tested in the field or authorized for commercialization. Third, in order to get more insight in the underlying practical, scientific and/or regulatory arguments supporting the choice of selection approaches, we present the results of a survey directed at relevant developers and users of GM plants. The applicability, efficiency, operational access and biosafety of the various selection approaches is discussed and considered in light of their current use, and in perspective to the long history of use of ARMGs in plant biotechnology. [ABSTRACT FROM AUTHOR]

Cysteine protease 1 precursor from Zea mays (zmCP1) is classified as a member of the C1A family of peptidases (papain-like cysteine protease) in MEROPS (the Peptidase Database). The 3D structure and substrate specificity of the zmCP1 is still unknown. This study is the first one to build the 3D structure of zmCP1 by computer-assisted homology modeling. In order to determine the substrate specificity of zmCP1, docking study is used for rapid and convenient analysis of large populations of ligand-enzyme complexes. Docking results show that zmCP1 has preference for P1 position and P2 position for Arg and a large hydrophobic residue (such as Phe). Gly147, Gly191, Cys189, and Asp190 are predicted to function as active residues at the S1 subsite, and the S2 subsite contains Leu283, Leu193, Ala259, Met194, and Ala286. SIFt results indicate that Gly144, Arg268, Trp308, and Ser311 play important roles in substrate binding. Then Molecular Mechanics-Poisson-Boltzmann Surface Area (MM-PBSA) method was used to explain the substrate specificity for P1 position of zmCp1. This study provides insights into the molecular basis of zmCP1 activity and substrate specificity. [ABSTRACT FROM AUTHOR]

Although a number of growth factors and receptors are known to control tumor angiogenesis, relatively little is known about the mechanism by which these factors influence the directional endothelial cell migration required for cancer microvessel formation. Recently, it has been shown that the focal adhesion protein paxillin is required for directional migration of fibroblasts in vitro. Here, we show that paxillin knockdown enhances endothelial cell migration in vitro and stimulates angiogenesis during normal development and in response to tumor angiogenic factors in vivo. Paxillin produces these effects by decreasing expression of neuropilin 2 (NRP2). Moreover, soluble factors secreted by tumors that stimulate vascular ingrowth, including vascular endothelial growth factor (VEGF), also decrease endothelial cell expression of paxillin and NRP2, and overexpression of NRP2 reverses these effects. These results suggest that the VEGF-paxillin-NRP2 pathway could represent a new therapeutic target for cancer and other angiogenesis-related diseases. [ABSTRACT FROM AUTHOR]

Neuropathy target esterase (NTE) is involved in several disorders in adult organisms and embryos. A relationship between NTE and nervous system integrity and maintenance in adult systems has been suggested. NTE-related motor neuron disease is associated with the expression of a mutant form of NTE and the inhibition and further modification of NTE by organophosphorus compounds is the trigger of a delayed neurodegenerative neuropathy. Homozygotic NTE knockout mice embryos are not viable, while heterozygotic NTE knockout mice embryos yields mice with neurological disorders, which suggest that this protein plays a critical role in embryonic development. The present study used D3 mouse embryonic stem cells with the aim of gaining mechanistic insights on the role of Pnpla6 (NTE gene encoding) in the developmental process. D3 cells were silenced by lipofectamine transfection with a specific interference RNA for Pnpla6. Silencing Pnpla6 in D3 monolayer cultures reduced NTE enzymatic activity to 50% 20 h post-treatment, while the maximum loss of Pnpla6 expression reached 80% 48 h postsilencing. Pnpla6 was silenced in embryoid bodies and 545 genes were differentially expressed regarding the control 96 h after silencing, which revealed alterations in multiple genetic pathways, such as cell motion and cell migration, vesicle regulation, and cell adhesion. These findings also allow considering that these altered pathways would impair the formation of respiratory, neural, and vascular tubes causing the deficiencies observed in the in vivo development of nervous and vascular systems. Our findings, therefore, support the previous observations made in vivo concerning lack of viability of mice embryos not expressing NTE and help to understand the biology of several neurological and developmental disorders in which NTE is involved. [ABSTRACT FROM AUTHOR]

The thermophilic intracellular protease (PH1704) from Pyrococcus horikoshii that functions as an oligomer (hexamer or higher forms) has proteolytic activity and remarkable stability. PH1704 is classified as a member of the C56 family of peptidases. This study is the first to observe that the use of Cl- as an allosteric inhibitor causes appreciable changes in the catalytic activity of the protease. Theoretical methods were used for further study. Quantum mechanical calculations indicated the binding mode of Cl- with Arg113. A molecular dynamics simulation explained how Cl- stabilized distinct contact species and how it controls the enzyme activity. The new structural insights obtained from this study are expected to stimulate further biochemical studies on the structures and mechanisms of allosteric proteases. It is clear that the discovery of new allosteric sites of the C56 family of peptidases may generate opportunities for pharmaceutical development and increases our understanding of the basic biological processes of this peptidase family. [ABSTRACT FROM AUTHOR]

Historically, only few chemicals have been identified as neurodevelopmental toxicants, however, concern remains, and has recently increased, based upon the association between chemical exposures and increased developmental disorders. Diminution in motor speed and latency has been reported in preschool children from agricultural communities. Organophosphorus compounds (OPs) are pesticides due to their acute insecticidal effects mediated by the inhibition of acetylcholinesterase, although other esterases as neuropathy target esterase (NTE) can also be inhibited. Other neurological and neurodevelopmental toxic effects with unknown targets have been reported after chronic exposure to OPs in vivo. We studied the initial stages of retinoic acid acid-triggered differentiation of pluripotent cells towards neural progenitors derived from human embryonal carcinoma stem cells to determine if neuropathic OP, mipafox, and non-neuropathic OP, paraoxon, are able to alter differentiation of neural precursor cells in vitro. Exposure to 1 μM paraoxon (non-cytotoxic concentrations) altered the expression of different genes involved in signaling pathways related to chromatin assembly and nucleosome integrity. Conversely, exposure to 5 μM mipafox, a known inhibitor of NTE activity, showed no significant changes on gene expression. We conclude that 1 μM paraoxon could affect the initial stage of in vitro neurodifferentiation possibly due to a teratogenic effect, while the absence of transcriptional alterations by mipafox exposure did not allow us to conclude a possible effect on neurodifferentiation pathways at the tested concentration. [ABSTRACT FROM AUTHOR]

Organophosphates ( OPs) form the bulk of pesticides that are currently in use around the world accounting for more than 30% of the world market. They also form the core for many nerve-based warfare agents including sarin and soman. The widespread use and the resultant build-up of OP pesticides and chemical nerve agents has led to the development of major health problems due to their extremely toxic interaction with any biological system that encounters them. Growing concern over the accumulation of OP compounds in our food products, in the soils from which they are harvested and in wastewater run-off has fuelled a growing interest in microbial biotechnology that provides cheap, efficient OP detoxification to supplement expensive chemical methods. In this article, we review the current state of knowledge of OP pesticide and chemical agent degradation and attempt to clarify confusion over identification and nomenclature of two major families of OP-degrading enzymes through a comparison of their structure and function. The isolation, characterization, utilization and manipulation of the major detoxifying enzymes and the molecular basis of degradation of OP pesticides and chemical nerve agents are discussed as well as the achievements and technological advancements made towards the bioremediation of such compounds. [ABSTRACT FROM AUTHOR]

The targeted therapeutic effect of nano drug delivery system for glioblastoma has been hampered by the weak enhanced permeability and retention (EPR) effect of glioblastoma and the low delivering efficiency of NDDS in glioblastoma tissue. In this study, a tumor-penetrating peptide (RGERPPR), the specific ligand of neuropilin-1 overexpressed on glioblastoma and endothelial cells, was used as a targeting moiety to enhance the anti-glioblastoma effect of doxorubicin liposomes. Firstly, RGERPPR-PEG-DSPE was synthesized and used to prepare the RGERPPR peptide-functionalized liposomes (RGE-LS), which showed vesicle sizes of around 90 nm and narrow size distributions. The cellular uptake and in vivo near-infrared fluorescence imaging test displayed that RGE-LS exhibited increased uptake by glioblastoma cells and intracranial glioblastoma tissues. The cytotoxicity assay and anti-glioblastoma study proved that RGERPPR functionalization significantly enhanced the in vitro inhibitory effect of doxorubicin liposomes on glioblastoma cells and prolonged the median survival time of nude mice bearing intracranial glioblastoma. Finally, the immunofluorescence analysis evidenced that RGE-LS were able to penetrate through tumor vessels and stroma and deep into the whole tumor tissue. The results indicated that tumor-penetrating peptide functionalization is an effective strategy for enhancing the anti-glioblastoma effect of doxorubicin liposomes. [ABSTRACT FROM AUTHOR]

Studies on the currently used organophosphorus insecticides with respect to their environmental levels and effective remediation technologies for their residues in water have been considered as a source of major concern. This study was carried out to monitor the presence of organophosphorus in drinking water plants (Kafr-El-Shiekh, Ebshan, Elhamoul, Mehalt Aboali, Fowa, Balteem and Metobess) in Kafr-El-Shiekh Governorate, Egypt. Furthermore, it was carried out to evaluate the efficiency of different remediation technologies (advanced oxidation processes and bioremediation) for removing chlorpyrifos in drinking water. The results showed the presence of several organophosphorus pesticides in water sampling sites. Chlorpyrifos was detected with high frequency relative to other compounds in drinking water. Nano photo-Fenton like reagent (Fe2O3(nano)/H2O2/UV) was the most effective treatment for chlorpyrifos removal in drinking water followed by ZnO(nano)/H2O2/UV, Fe3+/H2O2/UV and ZnO/H2O2/ UV, respectively. Bioremediation of chlorpyrifos by effective microorganisms (EMs) removed 100% of the chlorpyrifos initial concentration after 23 days of treatment. There is no remaining toxicity in chlorpyrifos contaminated-water after remediation on treated rats with respect to cholinesterase activity and histological changes in kidney and liver relative to control. Advanced oxidation processes especially with nanomaterials and bioremediation with effective microorganisms can be regarded as safe and effective remediation technologies for chlorpyrifos in drinking water. [ABSTRACT FROM AUTHOR]

In Saccharomyces cerevisiae, synthesis of T6P (trehalose 6- phosphate) is essential for growth on most fermentable carbon sources. In the present study, the metabolic response to glucose was analysed in mutants with different capacities to accumulate T6P. A mutant carrying a deletion in the T6P synthase encoding gene, TPS1, which had no measurable T6P, exhibited impaired ethanol production, showed diminished plasma membrane H+ - ATPase activation, and became rapidly depleted of nearly all adenine nucleotides which were irreversibly converted into inosine. Deletion of the AMP deaminase encoding gene, AMD1, in the tps1 strain prevented inosine formation, but did not rescue energy balance or growth on glucose. Neither the 90%-reduced T6P content observed in a tps1 mutant expressing the Tps1 protein from Yarrowia lipolytica, nor the hyperaccumulation of T6P in the tps2 mutant had significant effects on fermentation rates, growth on fermentable carbon sources or plasma membrane H+ - ATPase activation. However, intracellular metabolite dynamics and pH homoeostasis were strongly affected by changes in T6P concentrations. Hyperaccumulation of T6P in the tps2 mutant caused an increase in cytosolic pH and strongly reduced growth rates on non-fermentable carbon sources, emphasizing the crucial role of the trehalose pathway in the regulation of respiratory and fermentative metabolism. [ABSTRACT FROM AUTHOR]

Cellular metabolism converts available nutrients into usable energy and biomass precursors. The process is regulated to facilitate efficient nutrient use and metabolic homeostasis. Feedback inhibition of the first committed step of a pathway by its final product is a classical means of controlling biosynthesis. In a canonical example, the first committed enzyme in the pyrimidine pathway in Escherichia coli is allosterically inhibited by cytidine triphosphate. The physiological consequences of disrupting this regulation, however, have not been previously explored. Here we identify an alternative regulatory strategy that enables precise control of pyrimidine pathway end-product levels, even in the presence of dysregulated biosynthetic flux. The mechanism involves cooperative feedback regulation of the near-terminal pathway enzyme uridine monophosphate kinase. Such feedback leads to build-up of the pathway intermediate uridine monophosphate, which is in turn degraded by a conserved phosphatase, here termed UmpH, with previously unknown physiological function. Such directed overflow metabolism allows homeostasis of uridine triphosphate and cytidine triphosphate levels at the expense of uracil excretion and slower growth during energy limitation. Disruption of the directed overflow regulatory mechanism impairs growth in pyrimidine-rich environments. Thus, pyrimidine homeostasis involves dual regulatory strategies, with classical feedback inhibition enhancing metabolic efficiency and directed overflow metabolism ensuring end-product homeostasis. [ABSTRACT FROM AUTHOR]

In this paper we discuss the recent discovery of the universality of the three-body parameter (3BP) from Efimov physics. This new result was identified by recent experimental observations in ultracold quantum gases where the value of the s-wave scattering length, a = a, at which the first Efimov resonance is created was found to be nearly the same for a range of atomic species - if scaled as a/ r, where r is the van der Waals length. Here, we discuss some of the physical principles related to these observations that emerge from solving the three-body problem with van der Waals interactions in the hyperspherical formalism. We also demonstrate the strong three-body multichannel nature of the problem and the importance of properly accounting for nonadiabatic effects. [ABSTRACT FROM AUTHOR]

Poly(2-thiophene-3-yl-malonic acid) (P3TMA) was synthesized electrochemically using tetrabutylammonium perchlorate (TBAClO4) as electrolyte into acetonitrile (ACN) for glucose biosensor application. The properties of P3TMA were investigated using FTIR, SEM, and electrochemical measurements. The glucose oxidase enzyme (GOD) was chemically immobilized onto P3TMA modified electrode using glutaraldehyde as crosslinking. It was observed that response current of P3TMA/GOD enzyme electrode increased linearly with loading glucose concentration. Michaelis Menten constant ( K m) of P3TMA/GOD enzyme electrode was calculated as 0.03517 m M. FTIR and SEM analyses were used to confirm immobilization of GOD onto surface of P3TMA-modified electrode. © 2012 Wiley Periodicals, Inc. J. Appl. Polym. Sci., 2013 [ABSTRACT FROM AUTHOR]

Rapid and accurate evaluation of pollutant contamination in water is one of the key tasks of environmental monitoring. To make onsite assessment feasible, the analytical tools should be easy to operate, with minimal sample preparation needs. Gold nanoparticle (AuNP)-based sensors have the potential to detect toxins, heavy metals, and inorganic and organic pollutants in water rapidly with high sensitivity, and they are expected to play an increasingly important role in environmental monitoring. In this article, the synthesis, fabrication and functionalization of AuNPs are discussed, and the recent advances in the development and application of AuNP-based sensors for the determination of various pollutants contamination in water are reviewed. [ABSTRACT FROM AUTHOR]

Marker genes (MGs) are essential tools for plant research and biotechnology. Positive selectable marker genes (SMGs) are used in genetic transformation to allow only transgenic cells to grow and develop and are necessary for efficient transformation. Negative SMGs confer a selective disadvantage to the cells that express them, and have several uses in both basic and applied research. Reporter genes (RGs) make it possible to easily screen cells or tissues for their expression. Several tens of different genes from bacteria, fungi, plants, and animals have been demonstrated to function as SMGs. Here, SMGs are classified based on the mechanism of action of the gene products. To provide the readers with practically useful information, details on transformation and selection efficiency are given. RGs are the object of intense research. Refinement of existing RGs and development of new ones is constant, and has provided powerful aids for fine studies on cell biology and more efficient genetic engineering. They are classified as vital and non vital, depending on the possibility to screen their expression in living cells. The effect of MG expression on the phenotype and their safety in crops is briefly discussed. The picture emerging from this literature review is that a plentiful array of powerful and versatile tools for basic and applied research is available. [ABSTRACT FROM AUTHOR]

The ability of metal surfaces and nanostructures to localize and enhance optical fields is the primary reason for their application in biosensing and imaging. Local field enhancement boosts the signal-to-noise ratio in measurements and provides the possibility of imaging with resolutions significantly better than the diffraction limit. In fluorescence imaging, local field enhancement leads to improved brightness of molecular emission and to higher detection sensitivity and better discrimination. We review the principles of plasmonic fluorescence enhancement and discuss applications ranging from biosensing to bioimaging. [ABSTRACT FROM PUBLISHER]

Phosphotriesterase, a pesticide-degrading enzyme, from Flavobacterium sp. was cloned and expressed in Escherichia coli. The catalytic zinc ions were replaced by cobalt atoms increasing the catalytic activity of phosphotriesterase on different pesticides. This metal substitution increased the catalytic activity from 1.4 times to 4 times according to the pesticide. In order to explain this catalytic increase, QM/MM calculations were performed. Accordingly, the HOMO energy of the substrate is closer to the LUMO energy of the cobalt-substituted enzyme. The chemical modification of the enzyme surface with poly(ethylene glycol) increased the thermostability and stability against metal chelating agents of both metal phosphotriesterase preparations. [ABSTRACT FROM AUTHOR]

Field contamination with pesticide mixtures of organophosphates (OPs) and organochlorines (OCs) is becoming global issues to be solved urgently. The strategy of utilizing engineered microorganisms that have an ability to simultaneously degrade OPs and OCs has increasingly received great interest. In this work, an OP degradation gene ( mpd) and an OC degradation gene ( linA) were simultaneously introduced into Escherichia coli by using two compatible plasmids, resulting in strains with both OP degradation and OC degradation capabilities. To overcome the potential substrate uptake limitation, MPH was displayed on the cell surface of Escherichia coli using the N- and C-terminal domains of ice nucleation protein (INPNC) as an anchoring motif. The surface localization of INPNC-MPH was verified by cell fractionation, Western blot, proteinase accessibility, and immunofluorescence microscopy. Furthermore, both LinA and green fluorescent protein (GFP) were functionally co-expressed in the MPH-displaying Escherichia coli. The engineered Escherichia coli degraded OPs as well as OCs rapidly, and it can be easily monitored by GFP fluorescence. [ABSTRACT FROM AUTHOR]

The use of proteins as a treatment for organophosphorus intoxication has been investigated since A. R. Main demonstrated protective efficacy against parathion with an exogenously administered arylesterase in the late 1950s. His experiments spurred over 60 years of research and progress in the development of enzymes as potential bioscavengers of nerve agents and pesticides. Efforts have been made to broaden the specificity of enzymes to make a universal scavenger that would protect against multiple compounds, and an understanding of the differential isomer toxicity of these compounds has provided the impetus for rational and random mutagenic approaches in the stereospecific design of enzymes. As improved candidate enzymes are continually developed, our understanding of the contributions of the catalytic parameters (kcat, KM and catalytic efficiency) to efficacy expands. In addition to the scavenging properties of the proteins, another important aspect of development is the pharmacokinetic profile of the drug product. Immunogenicity, absorption, distribution and elimination contribute significantly to the level of protection afforded by the protein. A review of the development of organophosphorus hydrolase (OPH) for use as in vivo catalytic bioscavengers is presented here. Copyright © 2012 John Wiley & Sons, Ltd. [ABSTRACT FROM AUTHOR]

Studies of a few "model" amphibians continue to advance our mechanistic understanding of the endocrine control of larval amphibian development and metamorphosis, but there are few studies examining steroid profiles across species during larval amphibian development. We used censored regression analysis to address our primary objective, which was to examine baseline corticosterone level changes and responses to a standardized stressor throughout larval development in two amphibian species: one anuran (Wood Frogs, Rana sylvatica) and one caudate (Jefferson Salamanders, Ambystoma jeffersonianum). In addition, we looked at two additional factors that could influence the study of corticosterone during larval development, namely the rearing location of the animals (free-living, mesocosm-held, or laboratory-held) and for A. jeffersonlanum, the method of induction of the stress response (ACTH injection or a confinement-agitation [CA] protocol). As has been documented for other anurans, baseline corticosterone content of R. sylvatica increased close to metamorphic climax in all rearing locations, although the absolute level varied with rearing location. Baseline corticosterone content of A. jeffersonianum increased gradually over development, and the increase in corticosterone content following CA mirrored the increase in baseline levels, although the absolute magnitude of the increase with CA varied based on rearing location. In larvae of A. jeffersonianum, both the CA method and ACTH injection significantly increased corticosterone content, with 30 min eliciting the maximum hormonal response level. Our results suggest that rearing location can influence corticosterone levels and the response to a standardized CA protocol, and that care should be taken in extrapolating results from laboratory studies to free-living amphibian populations. [ABSTRACT FROM AUTHOR]

Organophosphates, amongst the most toxic substance known, are used widely in agriculture around the world. Their extensive use, however, has resulted in their occurrence in the water and food supply threatening humans and animals. Therefore, there is a need for determination of these neurotoxic compounds sensitively, selectively, and rapidly in the field. The present work is a brief review on the recent advancements in amperometric, potentiometric, and optical biosensors using genetically engineered microorganisms expressing organophosphate hydrolyzing enzyme intracellularly or anchored on the cell surface for the detection of organophosphate pesticides. The benefits and limitations associated with such microbial biosensors are delineated. [ABSTRACT FROM AUTHOR]

Taking advantage of both the high temporal and spatial resolutions of the Atmospheric Imaging Assembly on board the Solar Dynamics Observatory, we studied a limb coronal shock wave and its associated extreme ultraviolet (EUV) wave that occurred on 2010 June 13. Our main findings are: (1) the shock wave appeared clearly only in the channels centered at 193 Å and 211 Å as a dome-like enhancement propagating ahead of its associated semi-spherical coronal mass ejection (CME) bubble; (2) the density compression of the shock is 1.56 according to radio data and the temperature of the shock is around 2.8 MK; (3) the shock wave first appeared at 05:38 UT, 2 minutes after the associated flare has started and 1 minute after its associated CME bubble appeared; (4) the top of the dome-like shock wave set out from about 1.23 R⊙ and the thickness of the shocked layer is ~2 x 104 km; (5) the speed of the shock wave is consistent with a slight decrease from about 600 km s-1 to 550 km s-1; and (6) the lateral expansion of the shock wave suggests a constant speed around 400 km s-1, which varies at different heights and directions. Our findings support the view that the coronal shock wave is driven by the CME bubble, and the on-limb EUV wave is consistent with a fast wave or at least includes the fast wave component. [ABSTRACT FROM AUTHOR]

The display of proteins to cyanobacterial cell surface is made complex by combination of Gram-positive and Gram-negative features of cyanobacterial cell wall. Here, we showed that Synechococcus outer membrane protein A (SomA) can be used as an anchoring motif for the display of organophosphorus hydrolase (OPH) on cyanobacterial cell surface. The OPH, capable of degrading a wide range of organophosphate pesticides, was fused in frame to the carboxyl-terminus of different cell-surface exposed loops of SomA. Proteinase K accessibility assay and immunostaining visualized under confocal laser scanning microscopy demonstrated that a minor fraction of OPH with 12 histidines fused in frame with the third cell-surface exposed loop of SomA (SomAL3-OPH12H) was displayed onto the outermost cell surface with a substantial fraction buried in the cell wall, whereas OPH fused in frame with the fifth cell-surface exposed loop of SomA (SomAL5-OPH) was successfully translocated across the membrane and completely displayed onto the outermost surface of Synechococcus. The successful display of the functional heterologous protein on cell surface provides a useful model for variety of applications in cyanobacteria including screening of polypeptide libraries and whole-cell biocatalysts by immobilizing enzymes. [ABSTRACT FROM AUTHOR]

Trehalose (1-α- d-glucopyranosyl-1-α- d-glucopyranoside), a non-reducing disaccharide is a major compatible solute, which maintains fluidity of membranes and protects the biological structure of organisms under stress. In this study, trehalose-6-phosphate synthase ( otsA) and trehalose-6-phosphate phosphatase ( otsB) genes encoding for trehalose biosynthesis from Escherichia coli was cloned as an operon and expressed in E. coli M15(pREP4). The recombinant E. coli strain showed a threefold increase in the activity of otsBA pathway enzymes, compared to the control strain. The transgenic E. coli accumulated up to 0.86 mg /l of trehalose. The sequence of otsA and otsB genes reported in this study contains several base substitutions with that of reported sequences in GenBank, resulting in the altered amino acid sequences of the translated proteins. [ABSTRACT FROM AUTHOR]

Owing to their direct toxic effects on human beings, animals, and plants, chemical warfare agents (CWAs) and their mimics have become widespread in chemical warfare and agriculture. The considerable concerns about their entry into biological systems and the residues in environment stimulate the development of rapid and sensitive methods for the detection and analysis of this family of compounds. In the progress of sensitive, selective, and fast responsive detection, fluorescent molecular probes have been widely used in the detection of CWAs in recent years. Here the recent reports on the design of fluorescent molecular probes and their advantages in the detection of CWAs were reviewed. Furthermore, the extensive interests accelerate the development of novel fluorescent molecular probes and detection techniques in this field. [ABSTRACT FROM AUTHOR]

Copyright of Revista Mexicana de Biodiversidad is the property of Universidad Nacional Autonoma de Mexico, Instituto de Biologia and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)

This paper presents a review of applications of electrochemical methods in ocean sensing. It follows the white paper presented at the OceanSensors08 workshop held at the Leibniz-Institut für Ostseeforschung, Warnemünde, Germany, from 31 March to 4 April 2008. The principles of electrochemical techniques are briefly recalled and described. For each technique, relevant electrochemical sensors are discussed; known successful deployments of electrochemical sensors are recalled; challenges experienced when taking sensors from the research lab to the field are raised; future trends in development and applications are proposed and assessed for their potential for oceanographic applications; where possible technological readiness levels are estimated. The document is supported with references drawn from both the electrochemical and oceanographic literature. [ABSTRACT FROM AUTHOR]

Combined QM(PM3)/MM molecular dynamics simulations together with QM(DFT)/MM optimizations for key configurations have been performed to elucidate the enzymatic catalysis mechanism on the detoxification of paraoxon by phosphotriesterase (PTE). In the simulations, the PM3 parameters for the phosphorous atom were reoptimized. The equilibrated configuration of the enzyme/substrate complex showed that paraoxon can strongly bind to the more solvent-exposed metal ion Znβ, but the free energy profile along the binding path demonstrated that the binding is thermodynamically unfavorable. This explains why the crystal structures of PTE with substrate analogues often exhibit long distances between the phosphoral oxygen and Znβ. The subsequent SN2 reaction plays the key role in the whole process, but controversies exist over the identity of the nucleophilic species, which could be either a hydroxide ion terminally coordinated to Znα or the μ-hydroxo bridge between the α- and β-metals. Our simulations supported the latter and showed that the rate-limiting step is the distortion of the bound paraoxon to approach the bridging hydroxide. After this preparation step, the bridging hydroxide ion attacks the phosphorous center and replaces the diethyl phosphate with a low barrier. Thus, a plausible way to engineer PTE with enhanced catalytic activity is to stabilize the deformed paraoxon. Conformational analyses indicate that Trp131 is the closest residue to the phosphoryl oxygen, and mutations to Arg or Gln or even Lys, which can shorten the hydrogen bond distance with the phosphoryl oxygen, could potentially lead to a mutant with enhanced activity for the detoxification of organophosphates. © 2009 Wiley Periodicals, Inc. J Comput Chem, 2009 [ABSTRACT FROM AUTHOR]

Using a long-term study of black-tailed prairie dogs (Cynomys ludovicianus), we asked whether subdivision of a subpopulation (colony) into social breeding groups (coteries) influenced gene dynamics. We measured gene dynamics with common statistical tools, F-statistics and effective population size (Ne), but at a finer scale to account for coteries. We used 2 methods of estimating the gene dynamics of subgroups, and determined if these methods produced similar results that were congruent with an empirical measure of the observed effective population size (NeO). Modified F-statistics were estimated from pre- and postdispersal data from pedigrees and allozymes. Both indicated significant genetic substructuring of the colony subpopulation into coterie breeding groups. The rate of inbreeding of individuals relative to the coterie lineage indicated lower than expected inbreeding at the coterie level. Inbreeding of individuals relative to the colony was consistent with random mating. Asymptotic effective size estimates varied substantially. Chesser's method produced estimates of 77 (range 69-90, pedigree) and 86 (range 70-111, allozyme) individuals consistent with the NeO of 76 and previous empirical estimates of the instantaneous asymptotic effective size from pedigrees (92.9). Nunney's method produced much lower estimates of approximately one-half the NeO. Social subdivisions of the colony into coteries clearly influenced gene dynamics. Only the Chesser method accounted for genetic structure introduced by genealogy, both from polygynous mating and matrilines of philopatric females. This may prove important when estimating the rate of loss of genetic variation in highly social mammals. [ABSTRACT FROM AUTHOR]