2,643 results on '"Wicks P"'
Search Results
152. A metal-supported single-atom catalytic site enables carbon dioxide hydrogenation
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Hung, Sung-Fu, Xu, Aoni, Wang, Xue, Li, Fengwang, Hsu, Shao-Hui, Li, Yuhang, Wicks, Joshua, Cervantes, Eduardo González, Rasouli, Armin Sedighian, Li, Yuguang C., Luo, Mingchuan, Nam, Dae-Hyun, Wang, Ning, Peng, Tao, Yan, Yu, Lee, Geonhui, and Sargent, Edward H.
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- 2022
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153. The People’s Trial: supporting the public’s understanding of randomised trials
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Finucane, Elaine, O’Brien, Ann, Treweek, Shaun, Newell, John, Das, Kishor, Chapman, Sarah, Wicks, Paul, Galvin, Sandra, Healy, Patricia, Biesty, Linda, Gillies, Katie, Noel-Storr, Anna, Gardner, Heidi, O’Reilly, Mary Frances, and Devane, Declan
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- 2022
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154. Novel bilateral symmetrical congenital transverse upper and lower limb deficiencies in siblings in Ethiopia: two case reports
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Melaku, Amen Samuel, Bekele, Fiker Tadesse, Dires, Yilkal Muchie, and Wicks, Laurence
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- 2022
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155. Structure and density of silicon carbide to 1.5 TPa and implications for extrasolar planets
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Kim, D., Smith, R. F., Ocampo, I. K., Coppari, F., Marshall, M. C., Ginnane, M. K., Wicks, J. K., Tracy, S. J., Millot, M., Lazicki, A., Rygg, J. R., Eggert, J. H., and Duffy, T. S.
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- 2022
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156. Comment on “Accuracy and usability of a diagnostic decision support system in the diagnosis of three representative rheumatic diseases: a randomized controlled trial among medical students”
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Gilbert, Stephen and Wicks, Paul
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- 2022
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157. Negative interaction between nitrates and remote ischemic preconditioning in patients undergoing cardiac surgery: the ERIC-GTN and ERICCA studies
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Hamarneh, Ashraf, Ho, Andrew Fu Wah, Bulluck, Heerajnarain, Sivaraman, Vivek, Ricciardi, Federico, Nicholas, Jennifer, Shanahan, Hilary, Hardman, Elizabeth A., Wicks, Peter, Ramlall, Manish, Chung, Robin, McGowan, John, Cordery, Roger, Lawrence, David, Clayton, Tim, Kyle, Bonnie, Xenou, Maria, Ariti, Cono, Yellon, Derek M., and Hausenloy, Derek J.
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- 2022
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158. Targeting necroptosis in muscle fibers ameliorates inflammatory myopathies
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Kamiya, Mari, Mizoguchi, Fumitaka, Kawahata, Kimito, Wang, Dengli, Nishibori, Masahiro, Day, Jessica, Louis, Cynthia, Wicks, Ian P., Kohsaka, Hitoshi, and Yasuda, Shinsuke
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- 2022
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159. Commentary: an industry perspective on the importance of incorporating participant voice before, during, and after clinical trials
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N. Goodson, P. Wicks, and C. Farina
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Patient and public involvement ,Recruitment ,Retention ,Medicine (General) ,R5-920 - Abstract
Abstract It is increasingly recognized that involving patients and the public in the design of clinical trials can lead to better recruitment, retention, and satisfaction. A recent scoping review determined that between 1985 and 2018, just 23 articles meeting quality criteria obtained feedback from clinical trial participants after a trial had been completed. In a timespan that presumably included thousands of trials across hundreds of indications, the paucity of the literature seems surprising, if not outright disappointing. By contrast, practitioners in the life sciences industry are increasingly incorporating patient research into their trial design process before, during, and after trial completion. Examples of approaches used include recruitment of “look alike” participant samples through online communities, surveys, and the use of smartphone apps to directly record participants’ spoken reactions to trial materials like recruitment materials, site visit schedules, or informed consent materials. However, commercial organizations tend not to publish their findings, leading to a potential two-tier experience for trial participants depending on whether the trial they participate in will be industry-funded or government-funded. This seems problematic on a number of levels. Increasing regulatory, funder, and publisher interest in improving the inclusivity of clinical trial participants may act as a timely lever to spur patient-centered coproduction of trials. Until continuous feedback processes are the mandated, funded, and published norm, participating in a clinical trial will be more arduous than it needs to be.
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- 2022
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160. Structure and density of silicon carbide to 1.5 TPa and implications for extrasolar planets
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D. Kim, R. F. Smith, I. K. Ocampo, F. Coppari, M. C. Marshall, M. K. Ginnane, J. K. Wicks, S. J. Tracy, M. Millot, A. Lazicki, J. R. Rygg, J. H. Eggert, and T. S. Duffy
- Subjects
Science - Abstract
Using ramp compression, silicon carbide was compressed to pressures of 1.5 terapascals, more than seven times higher than previous work. The results show that large carbon-rich exoplanets would be ~10% less dense than corresponding rocky planets.
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- 2022
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161. Surface Rupture on a Secondary Fault Associated with the 8 August 2020 Mw 5.1 Sparta North Carolina Earthquake
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Charles W. Wicks, Jr. and Jer-Ming Chiu
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Geology ,QE1-996.5 - Abstract
On 8 August 2020, northwest North Carolina experienced an Mw 5.1 earthquake that caused damage to buildings and roads in the city of Sparta. A regional centroid moment tensor solution shows that the earthquake was the result of slip on a reverse fault with a minor strike-slip component. Interferometric Synthetic Aperture Radar (InSAR) data, from the Japan Aerospace Exploration Agency’s Advanced Land Observing Satellite #2 (ALOS2) satellite, reveal a deformation field that is more complex than expected from a single reverse fault earthquake. The data also reveal an apparent fault rupture at the Earth’s surface that caused damage to local roads. Modeling of the InSAR deformation field indicates the fault rupture is associated with a very shallow normal faulting event with an equivalent Mw of about 5.1 that overprinted the reverse fault deformation field and possibly occurred aseismically.
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- 2022
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162. The People’s Trial: supporting the public’s understanding of randomised trials
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Elaine Finucane, Ann O’Brien, Shaun Treweek, John Newell, Kishor Das, Sarah Chapman, Paul Wicks, Sandra Galvin, Patricia Healy, Linda Biesty, Katie Gillies, Anna Noel-Storr, Heidi Gardner, Mary Frances O’Reilly, and Declan Devane
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Randomised trial ,Public engagement ,Online ,Methodology ,Medicine (General) ,R5-920 - Abstract
Abstract Background Randomised trials are considered the gold standard in providing robust evidence on the effectiveness of interventions. However, there are relatively few initiatives to help increase public understanding of what randomised trials are and why they are important. This limits the overall acceptance of and public participation in clinical trials. The People’s Trial aims to help the public learn about randomised trials, to understand why they matter, and to be better equipped to think critically about health claims by actively involving them in all aspects of trial design. This was done by involving the public in the design, conduct, and dissemination of a randomised trial. Methods Using a reflexive approach, we describe the processes of development, conduct, and dissemination of The People’s Trial. Results Over 3000 members of the public, from 72 countries, participated in The People’s Trial. Through a series of online surveys, the public designed a trial called The Reading Trial. They chose the question the trial would try to answer and decided the components of the trial question. In December 2019, 991 participants were recruited to a trial to answer the question identified and prioritised by the public, i.e. ‘Does reading a book in bed make a difference to sleep in comparison with not reading a book in bed?’ We report the processes of The People’s Trial in seven phases, paralleling the steps of a randomised trial, i.e. question identification and prioritisation, recruitment, randomisation, trial conduct, data analysis, and sharing of findings. We describe the decisions we made, the processes we used, the challenges we encountered, and the lessons we learned. Conclusion The People’s Trial involved the public successfully in the design, conduct, and dissemination of a randomised trial demonstrating the potential for such initiatives to help the public learn about randomised trials, to understand why they matter, and to be better equipped to think critically about health claims. Trial registration ClinicalTrials.gov NCT04185818 . Registered on 4 December 2019
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- 2022
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163. Frobenius-Perron Theory of Endofunctors
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Chen, Jianmin, Gao, Zhibin, Wicks, Elizabeth, Zhang, James Jian, Zhang, Xiaohong, and Zhu, Hong
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Mathematics - Rings and Algebras ,Mathematics - Quantum Algebra - Abstract
We introduce the Frobenius-Perron dimension of an endofunctor of a k-linear category and provide some applications., Comment: updated references
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- 2017
164. Tests for coronal electron temperature signatures in suprathermal electron populations at 1 AU
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Macneil, Allan R., Owen, Christopher J., and Wicks, Robert T.
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Physics - Space Physics ,Astrophysics - Solar and Stellar Astrophysics ,Physics - Plasma Physics - Abstract
The development of knowledge of how the coronal origin of the solar wind affects its in situ properties is one of the keys to understanding the relationship between the Sun and the heliosphere. In this paper, we analyse ACE/SWICS and WIND/3DP data spanning >12 years, and test properties of solar wind suprathermal electron distributions for the presence of signatures of the coronal temperature at their origin which may remain at 1AU. In particular we re-examine a previous suggestion that these properties correlate with the oxygen charge state ratio O7+/O6+; an established proxy for coronal electron temperature. We find only a very weak but variable correlation between measures of suprathermal electron energy content and O7+/O6+. The weak nature of the correlation leads us to conclude, in contrast to earlier results, that an initial relationship with core electron temperature has the possibility to exist in the corona, but that in most cases no strong signatures remain in the suprathermal electron distributions at 1AU. It can not yet be confirmed whether this is due to the effects of coronal conditions on the establishment of this relationship, or to the altering of the electron distributions by processing during transport in the solar wind en route to 1AU. Contrasting results for the halo and strahl population favours the latter interpretation. Confirmation of this will be possible using Solar Orbiter data (cruise and nominal mission phase) to test whether the weakness of the relationship persists over a range of heliocentric distances. If the correlation is found to strengthen when closer to the Sun, then this would indicate an initial relationship which is being degraded, perhaps by wave-particle interactions, en route to the observer, Comment: Accepted to Annales Geophysicae as of 21 Oct 2017
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- 2017
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165. The language of exoplanet ranking metrics needs to change
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Tasker, Elizabeth, Tan, Joshua, Heng, Kevin, Kane, Stephen, Spiegel, David, Brasser, Ramon, Casey, Andrew, Desch, Steven, Dorn, Caroline, Houser, Christine, Hernlund, John, Lasbleis, Marine, Laneuville, Matthieu, Libert, Anne-Sophie, Noack, Lena, Unterborn, Cayman, and Wicks, June
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Astrophysics - Earth and Planetary Astrophysics - Abstract
We have found many Earth-sized worlds but we have no way of determining if their surfaces are Earth-like. This makes it impossible to quantitatively compare habitability, and pretending we can risks damaging the field., Comment: Published in Nature Astronomy, Comment, 02/2017
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- 2017
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166. Context-Aware System Synthesis, Task Assignment, and Routing
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Ziglar, Jason, Williams, Ryan, and Wicks, Alfred
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Computer Science - Robotics ,I.2.9 ,G.2.2 ,G.2.1 - Abstract
The design and organization of complex robotic systems traditionally requires laborious trial-and-error processes to ensure both hardware and software components are correctly connected with the resources necessary for computation. This paper presents a novel generalization of the quadratic assignment and routing problem, introducing formalisms for selecting components and interconnections to synthesize a complete system capable of providing some user-defined functionality. By introducing mission context, functional requirements, and modularity directly into the assignment problem, we derive a solution where components are automatically selected and then organized into an optimal hardware and software interconnection structure, all while respecting restrictions on component viability and required functionality. The ability to generate \emph{complete} functional systems directly from individual components reduces manual design effort by allowing for a guided exploration of the design space. Additionally, our formulation increases resiliency by quantifying resource margins and enabling adaptation of system structure in response to changing environments, hardware or software failure. The proposed formulation is cast as an integer linear program which is provably $\mathcal{NP}$-hard. Two case studies are developed and analyzed to highlight the expressiveness and complexity of problems that can be addressed by this approach: the first explores the iterative development of a ground-based search-and-rescue robot in a variety of mission contexts, while the second explores the large-scale, complex design of a humanoid disaster robot for the DARPA Robotics Challenge. Numerical simulations quantify real world performance and demonstrate tractable time complexity for the scale of problems encountered in many modern robotic systems., Comment: 17 pages, 10 figures, Submitted to Transactions in Robotics
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- 2017
167. On Kinetic Slow Modes, Fluid Slow Modes, and Pressure-balanced Structures in the Solar Wind
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Verscharen, Daniel, Chen, Christopher H. K., and Wicks, Robert T.
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Physics - Space Physics ,Astrophysics - Solar and Stellar Astrophysics ,Physics - Plasma Physics - Abstract
Observations in the solar wind suggest that the compressive component of inertial-range solar-wind turbulence is dominated by slow modes. The low collisionality of the solar wind allows for non-thermal features to survive, which suggests the requirement of a kinetic plasma description. The least-damped kinetic slow mode is associated with the ion-acoustic (IA) wave and a non-propagating (NP) mode. We derive analytical expressions for the IA-wave dispersion relation in an anisotropic plasma in the framework of gyrokinetics and then compare them to fully-kinetic numerical calculations, results from two-fluid theory, and MHD. This comparison shows major discrepancies in the predicted wave phase speeds from MHD and kinetic theory at moderate to high $\beta$. MHD and kinetic theory also dictate that all plasma normal modes exhibit a unique signature in terms of their polarization. We quantify the relative amplitude of fluctuations in the three lowest particle velocity moments associated with IA and NP modes in the gyrokinetic limit and compare these predictions with MHD results and in-situ observations of the solar-wind turbulence. The agreement between the observations of the wave polarization and our MHD predictions is better than the kinetic predictions, suggesting that the plasma behaves more like a fluid in the solar wind than expected., Comment: 8 pages, 5 figures
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- 2017
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168. Examining the Case for Palliative Care in Patients With Systemic Sclerosis.
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McDonald, Julie C., Ross, Laura, Wicks, Carolyn J., and Philip, Jennifer A. M.
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- 2024
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169. Perceptions of dietitians and key role players regarding their role in reporting food labelling transgressions in South Africa.
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Profe-Fuchsloch, M, Koen, N, and Wicks, M
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Objectives: A study was undertaken to describe South African dietitians and key role players' perceptions regarding their role in reporting food labelling legislation transgressions. Design: A multimethod study design was employed to explore a previously unstudied topic. Setting: Dietitians registered with the Health Professions Council of South Africa (HPCSA) together with key role players in food labelling in South Africa. Methods: Quantitative data were collected using a self-administered electronic questionnaire and qualitative data using a semi-structured interview guide. Quantitative data were analysed using Microsoft Excel and qualitative data using ATLAS.ti software. Data were analysed independently in the results section but integrated for interpretation of the findings. Results: In total, only 6% (n = 7) of the included dietitians (n = 126) reported food labelling transgressions, and 12% (n = 15) believed dietitians have a role to play in reporting transgressions. Interestingly, half of the included dietitians (50%, n = 63) stated they would report an identified transgression. Dietitians demonstrated a lack of awareness of the current food labelling regulations, with 43% wrongly identifying the draft regulation to consult. Almost all (99%, n = 125) of the included dietitians reported that their transgression reporting practices would improve if a clear guideline from the Department of Health: Directorate Food Control (DoH DFC) was available. Key role players (n = 8) cited enforcement issues and a perceived gap in dietitians' understanding of legislation and reporting processes as barriers to reporting non-compliance. Key role players identified enablers such as awareness of regulations, contacts within the DoH DFC and familiarity with the reporting process for transgressions. They also provided insight on the proper procedure for reporting food labelling transgressions. Conclusion: The low prevalence of food labelling transgression reporting by dietitians stems from several barriers, including a perceived lack of confidence regarding the current regulation, awareness of the applicable legislation, uncertainty regarding the correct reporting procedure and scepticism that transgression reports will be acted upon. Regular communication regarding food and nutrition regulations and the development of an easy-to-use transgression reporting framework could support the implementation and impact of food labelling regulations in South Africa. [ABSTRACT FROM AUTHOR]
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- 2024
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170. What Drives Student Engagement: Is It Learning Space, Instructor Behavior, or Teaching Philosophy?
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Sawers, Kimberly M., Wicks, David, Mvududu, Nyaradzo, Seeley, Lane, and Copeland, Raedene
- Abstract
This study investigates how instructor teaching philosophy (traditional vs. constructivist) and type of learning space (traditional vs. active) influence instructor perceptions of student engagement. In a quasi-experimental study, we found that instructors perceived that students were more engaged in the active learning classroom (ALC) than in the traditional classroom. In addition, we found that instructors with a more constructivist philosophy perceived that students engaged more actively in learning. On closer analysis, however, the difference in perceived student engagement was only significant between more versus less constructivist philosophy when in the ALC. Finally, we found that the relationship between teaching philosophy and student engagement in the ALC was mediated by instructor behavior.
- Published
- 2016
171. Ramp Compression of Germanium Dioxide to Extreme Conditions: Phase Transitions in an SiO_{2} Analog
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D. Kim, I. K. Ocampo, R. F. Smith, F. Coppari, M. Millot, J. K. Wicks, J. R. Rygg, J. H. Eggert, and T. S. Duffy
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Physics ,QC1-999 - Abstract
The high-pressure (HP) behavior of dioxides is of interest due to their extensive polymorphism and role as analogs for SiO_{2}, a phase expected to be important in the deep mantles of Earth and terrestrial exoplanets. Here we report on dynamic ramp compression of quartz-type germanium dioxide GeO_{2} to stresses up to 882 GPa, a higher peak stress than previous studies by a factor of 5. X-ray diffraction data show that HP-PdF_{2}-type GeO_{2} occurs under ramp loading from 154 to 440 GPa, and this phase persists to higher pressure than predicted by theory. Above 440 GPa, we observe evidence for transformation to a new phase of GeO_{2}. Based on the diffraction data, the best candidate for this new phase is the cotunnite-type structure which has been predicted to be a stable phase of GeO_{2} above 300 GPa. The HP-PdF_{2}-type and cotunnite-type structures are important phases in a wide range of AX_{2} compounds, including SiO_{2}, at multihundred GPa stresses. Our results demonstrate that ramp compression can be an effective technique for synthesizing and characterizing such phases in oxides. In addition, we show that pulsed x-ray diffraction under ramp compression can be used to examine lower-symmetry phases in oxide materials.
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- 2023
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172. Shared Book Reading Behaviors of Parents and Their Verbal Preschoolers on the Autism Spectrum
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Westerveld, Marleen F., Paynter, Jessica, and Wicks, Rachelle
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Preschoolers on the autism spectrum are at risk of persistent language and literacy difficulties thus research into shared book reading (SBR) in this group is important. We observed 47 parents and their verbal preschoolers on the spectrum sharing two unfamiliar picture books and coded the interactions for parent and child behaviors. Parents were able to engage their child in SBR and demonstrated a range of print- and meaning-related SBR behaviors with no evidence of a focus on print. Multiple regressions showed direct effects of parents' explicit teaching of story structure and use of questions on their children's verbal participation. Further research is needed to unpack the potential transactional relationships between parent and child SBR behaviors to inform early intervention.
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- 2020
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173. Looking or Talking: Visual Attention and Verbal Engagement during Shared Book Reading of Preschool Children on the Autism Spectrum
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Wicks, Rachelle, Paynter, Jessica, and Westerveld, Marleen F.
- Abstract
Visual attention and active engagement during shared book reading are important for facilitating emergent literacy learning during the preschool years. Children on the autism spectrum often show difficulties in language and literacy development, yet research investigating potential indicators of shared book reading engagement, including visual attention and verbal engagement, for this group of preschoolers is currently limited. To better understand the relationship between children's visual attention and verbal engagement during shared book reading, parent shared book reading behaviors, and children's emergent literacy skills (e.g. receptive vocabulary and letter-name knowledge), we observed 40 preschoolers on the spectrum and their parents sharing an unfamiliar storybook. Videos of the shared book reading interactions were transcribed and coded for child and parent behaviors using observational coding schemes. Strong significant associations were found between children's visual attention, verbal engagement, and parents' use of questions and/or prompts during the shared book reading interaction. Contrary to expectations, children's visual attention was not related to their emergent literacy skills. Overall, our findings emphasize the interplay between parent behaviors and how preschoolers on the spectrum engage in this important literacy-related context and provide directions for future research.
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- 2020
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174. Adjunct Faculty Onboarding: Is Social Media a Solution?
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Wicks, Jessica M., Greenhow, Christine M., and Tyler, Alexa J.
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In a pilot study of an affordable and low-maintenance social media solution for adjunct faculty socialization or onboarding at the community college, interested adjuncts were offered the opportunity to participate in a social media-like experience made possible by the Moodle Social wall format plugin. Though qualitative data did not suggest this opportunity supported three socialization constructs (information, ownership, and connectedness), a small subset of adjunct faculty participants expressed excitement about its potential, describing it as a tool facilitating connectedness and information sharing in related comments. Practical suggestions are noted related to the design and research of social media interventions.
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- 2020
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175. Gas diffusion electrodes, reactor designs and key metrics of low-temperature CO2 electrolysers
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Wakerley, David, Lamaison, Sarah, Wicks, Joshua, Clemens, Auston, Feaster, Jeremy, Corral, Daniel, Jaffer, Shaffiq A., Sarkar, Amitava, Fontecave, Marc, Duoss, Eric B., Baker, Sarah, Sargent, Edward H., Jaramillo, Thomas F., and Hahn, Christopher
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- 2022
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176. The ubiquitin-dependent ATPase p97 removes cytotoxic trapped PARP1 from chromatin
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Krastev, Dragomir B., Li, Shudong, Sun, Yilun, Wicks, Andrew J., Hoslett, Gwendoline, Weekes, Daniel, Badder, Luned M., Knight, Eleanor G., Marlow, Rebecca, Pardo, Mercedes Calvo, Yu, Lu, Talele, Tanaji T., Bartek, Jiri, Choudhary, Jyoti S., Pommier, Yves, Pettitt, Stephen J., Tutt, Andrew N. J., Ramadan, Kristijan, and Lord, Christopher J.
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- 2022
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177. A metal-supported single-atom catalytic site enables carbon dioxide hydrogenation
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Sung-Fu Hung, Aoni Xu, Xue Wang, Fengwang Li, Shao-Hui Hsu, Yuhang Li, Joshua Wicks, Eduardo González Cervantes, Armin Sedighian Rasouli, Yuguang C. Li, Mingchuan Luo, Dae-Hyun Nam, Ning Wang, Tao Peng, Yu Yan, Geonhui Lee, and Edward H. Sargent
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Science - Abstract
Converting CO2 and H2O into value-added chemical feedstocks and fuels offers a carbon neutral approach to tackling global energy and climate concerns. Here the authors report a metal supported single-atom catalytic site enabling the electrocatalytic reduction of CO2 to methane.
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- 2022
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178. Kinematic Slip Model of the 2021 M 6.0 Antelope Valley, California, Earthquake
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Fred F. Pollitz, Chuck W. Wicks, and William C. Hammond
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Geology ,QE1-996.5 - Abstract
We present a kinematic slip model of the 8 July 2021 Antelope Valley earthquake from a finite-source inversion based on regional seismic waveforms and static offsets from Global Positioning System (GPS) and Interferometric Synthetic Aperture Radar (InSAR). Seismic waveforms are employed at 6 s dominant period out to 100 km from the epicenter, and the combined GPS and InSAR datasets cover the near field and far field out to ∼100 km and constrain the overall rupture size. The aftershock pattern defines a nearly north-striking, 50° east-dipping fault plane. We find a unilateral rupture along this fault plane propagating southward and updip with predominantly normal slip up to ∼1.5 m. The estimated seismic moment of 8.47×10^17 N·m is equivalent to Mw 5.92. A finite-source inversion that retains seismic waveforms and GPS static offsets but omits InSAR range changes yields a seismic moment of 1.08×10^18 N·m (Mw 5.99). Despite vigorous aftershock activity between 10 km and Earth’s surface, coseismic slip is concentrated in the depth interval 7–10 km.
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- 2022
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179. Targeting necroptosis in muscle fibers ameliorates inflammatory myopathies
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Mari Kamiya, Fumitaka Mizoguchi, Kimito Kawahata, Dengli Wang, Masahiro Nishibori, Jessica Day, Cynthia Louis, Ian P. Wicks, Hitoshi Kohsaka, and Shinsuke Yasuda
- Subjects
Science - Abstract
Polymyositis (PM) is a chronic inflammatory myopathy characterized by progressive muscle weakness. Here the authors showed that muscle fibers in PM undergo necroptosis and aggravate inflammation via releasing pro-inflammatory molecules such as HMGB1.
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- 2022
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180. Dietary butyrate ameliorates metabolic health associated with selective proliferation of gut Lachnospiraceae bacterium 28-4
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Zhuang Li, Enchen Zhou, Cong Liu, Hope Wicks, Sena Yildiz, Farhana Razack, Zhixiong Ying, Sander Kooijman, Debby P.Y. Koonen, Marieke Heijink, Sarantos Kostidis, Martin Giera, Ingrid M.J.G. Sanders, Ed J. Kuijper, Wiep Klaas Smits, Ko Willems van Dijk, Patrick C.N. Rensen, and Yanan Wang
- Subjects
Endocrinology ,Microbiology ,Medicine - Abstract
Short-chain fatty acids, including butyrate, have multiple metabolic benefits in individuals who are lean but not in individuals with metabolic syndrome, with the underlying mechanisms still being unclear. We aimed to investigate the role of gut microbiota in the induction of metabolic benefits of dietary butyrate. We performed antibiotic-induced microbiota depletion of the gut and fecal microbiota transplantation (FMT) in APOE*3-Leiden.CETP mice, a well-established translational model for developing human-like metabolic syndrome, and revealed that dietary butyrate reduced appetite and ameliorated high-fat diet–induced (HFD-induced) weight gain dependent on the presence of gut microbiota. FMT from butyrate-treated lean donor mice, but not butyrate-treated obese donor mice, into gut microbiota–depleted recipient mice reduced food intake, attenuated HFD-induced weight gain, and improved insulin resistance. 16S rRNA and metagenomic sequencing on cecal bacterial DNA of recipient mice implied that these effects were accompanied by the selective proliferation of Lachnospiraceae bacterium 28-4 in the gut as induced by butyrate. Collectively, our findings reveal a crucial role of gut microbiota in the beneficial metabolic effects of dietary butyrate as strongly associated with the abundance of Lachnospiraceae bacterium 28-4.
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- 2023
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181. Mapping groundwater discharge seeps by thermal UAS imaging on a wetland restoration site
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C. Lyn Watts, Christine E. Hatch, and Ryan Wicks
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thermal infrared (TIR) ,wetlands ,groundwater–surface water interaction ,UAS (unmanned aircraft system) ,UAV (unmanned aerial vehicle) ,photogrammetry ,Environmental sciences ,GE1-350 - Abstract
One of the key metrics for the effectiveness of wetland restoration is whether a restored wetland behaves hydrologically like a natural wetland. Restoration is designed to increase the water residence time on the surface of the site in order to capture and process nutrients, mitigate the impact of local flooding and drought, and provide a habitat for wetland species abundance and biodiversity. Quantifying the change in groundwater presence at the wetland’s surface will inform future freshwater wetland restorations across New England. The ability to produce a comprehensive map of the locations of groundwater discharge over a large area has the potential to provide insight into restoration practice, its success, and its effects on individual seeps over time. Identification, mapping, and measurement of groundwater discharge sites have long been a challenge, but new methodologies are developing with the advances in unmanned aerial systems (UAS). This study uses a UAS-mounted thermal infrared camera to map groundwater seeps on a 25-ha (62-acre) site in Plymouth, Massachusetts, before and after it underwent restoration to a freshwater wetland. Using the thermal map, we located and quantified the spatial extent that of groundwater seeps pre-restoration and the changes after restoration. The location and size of these seeps show that existing groundwater seeps remained immobile through restoration, but their surface expression grew, indicating that restoration removed barriers to surface expression and successfully increased residence time. This analysis using a thermal camera-enabled UAS allows for a temporal comparison over large spatial scales and provides insight into restoration impacts to groundwater expression on the surface of post-agricultural wetland sites.
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- 2023
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182. Free Flap Fat Volume is Not Associated With Recurrence or Wound Complications in Oral Cancer
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Andre J. Burnham, Jaime Wicks, Kristen L. Baugnon, Mark W. El‐Deiry, and Nicole C. Schmitt
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adipose stem cells ,adipose tissue ,free flap ,head and neck cancer ,recurrence ,Otorhinolaryngology ,RF1-547 ,Surgery ,RD1-811 - Abstract
Abstract Objective Adipose stem cells (ASCs) have been shown in many preclinical studies to be potent suppressors of the immune system. Prior studies suggest that ASCs may promote cancer progression and wound healing. However, clinical studies investigating the effects of native, or fat‐grafted adipose tissue on cancer recurrence have generated mixed results. We investigated whether adipose content in reconstructive free flaps for oral squamous cell carcinoma (OSCC) is associated with disease recurrence and/or reduction in wound complications. Study Design Retrospective chart review. Setting Academic medical center. Methods We performed a review of 55 patients undergoing free flap reconstruction for OSCC over a 14‐month period. Using texture analysis software, we measured the relative free flap fat volume (FFFV) in postoperative computed tomography scans and compared fat volume with patient survival, recurrence, and wound healing complications. Results We report no difference in mean FFFV between patients with or without recurrence: 13.47 cm3 in cancer‐free survivors and 17.99 cm3 in cases that recurred (p = .56). Two‐year recurrence‐free survival in patients with high and low FFFV was 61.0% and 59.1%, respectively (p = .917). Although only 9 patients had wound healing complications, we found no trend in the incidence of wound healing complications between patients with high versus low FFFV. Conclusion FFFV is not associated with recurrence or wound healing in patients undergoing free flap reconstruction for OSCC, suggesting adipose content should not be of concern to the reconstructive surgeon.
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- 2023
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183. The Comparative Pathology Workbench: Interactive visual analytics for biomedical data
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Michael N. Wicks, Michael Glinka, Bill Hill, Derek Houghton, Mehran Sharghi, Ingrid Ferreira, David Adams, Shahida Din, Irene Papatheodorou, Kathryn Kirkwood, Michael Cheeseman, Albert Burger, Richard A. Baldock, and Mark J. Arends
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Image visualisation ,Shared workspace ,Image spreadsheet ,Visual comparison ,Visual analytics ,Embedded discussion ,Computer applications to medicine. Medical informatics ,R858-859.7 ,Pathology ,RB1-214 - Abstract
Pathologists need to compare histopathological images of normal and diseased tissues between different samples, cases, and species. We have designed an interactive system, termed Comparative Pathology Workbench (CPW), which allows direct and dynamic comparison of images at a variety of magnifications, selected regions of interest, as well as the results of image analysis or other data analyses such as scRNA-seq. This allows pathologists to indicate key diagnostic features, with a mechanism to allow discussion threads amongst expert groups of pathologists and other disciplines. The data and associated discussions can be accessed online from anywhere in the world. The Comparative Pathology Workbench (CPW) is a web-browser-based visual analytics platform providing shared access to an interactive “spreadsheet” style presentation of image and associated analysis data. The CPW provides a grid layout of rows and columns so that images that correspond to matching data can be organised in the form of an image-enabled “spreadsheet”. An individual workbench can be shared with other users with read-only or full edit access as required. In addition, each workbench element or the whole bench itself has an associated discussion thread to allow collaborative analysis and consensual interpretation of the data.The CPW is a Django-based web-application that hosts the workbench data, manages users, and user-preferences. All image data are hosted by other resource applications such as OMERO or the Digital Slide Archive. Further resources can be added as required. The discussion threads are managed using WordPress and include additional graphical and image data. The CPW has been developed to allow integration of image analysis outputs from systems such as QuPath or ImageJ. All software is open-source and available from a GitHub repository.
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- 2023
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184. Online randomised trials with children: A scoping review.
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Simone Lepage, Aislinn Conway, Noah Goodson, Paul Wicks, Laura Flight, and Declan Devane
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Medicine ,Science - Abstract
BackgroundPaediatric trials must contend with many challenges that adult trials face but often bring additional obstacles. Decentralised trials, where some or all trial methods occur away from a centralised location, are a promising strategy to help meet these challenges. This scoping review aims to (a) identify what methods and tools have been used to create and conduct entirely online-decentralised trials with children and (b) determine the gaps in the knowledge in this field. This review will describe the methods used in these trials to identify their facilitators and the gaps in the knowledge.MethodsThe methods were informed by guidance from the Joanna Briggs Institute and the PRISMA extension for scoping reviews. We systematically searched MEDLINE, CENTRAL, CINAHL, and Embase databases, trial registries, pre-print servers, and the internet. We included randomised and quasi-randomised trials conducted entirely online with participants under 18 published in English. A risk of bias assessment was completed for all included studies.ResultsTwenty-one trials met our inclusion criteria. The average age of participants was 14.6 years. Social media was the most common method of online recruitment. Most trials employed an external host website to store and protect their data. Duration of trials ranged from single-session interventions up to ten weeks. Fourteen trials compensated participants. Eight trials involved children in their trial design process; none reported compensation for this. Most trials had a low risk of bias in "random sequence generation", "selective reporting", and "other". Most trials had a high risk of bias in "blinding participants and personnel", "blinding of outcome assessment", and "incomplete outcome data". "Allocation concealment" was unclear in most studies.ConclusionsThere was a lack of transparent reporting of the recruitment, randomisation, and retention methods used in many of the trials included in this review. Patient and public involvement (PPI) was not common, and the compensation of PPI partners was not reported in any study. Consent methods and protection against fraudulent entries to trials were creative and thoroughly discussed by some trials and not addressed by others. More work and thorough reporting of how these trials are conducted is needed to increase their reproducibility and quality.Ethics and disseminationEthical approval was not necessary since all data sources used are publicly available.
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- 2023
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185. Administration of an LXR agonist promotes atherosclerotic lesion remodelling in murine inflammatory arthritis
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Dragana Dragoljevic, Man Kit Sam Lee, Gerard Pernes, Pooranee K Morgan, Cynthia Louis, Waled Shihata, Kevin Huynh, Arina A Kochetkova, Patrick W Bell, Natalie A Mellett, Peter J Meikle, Graeme I Lancaster, Michael J Kraakman, Prabhakara R Nagareddy, Beatriz Y Hanaoka, Ian P Wicks, and Andrew J Murphy
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atherosclerosis ,cholesterol metabolism ,inflammation ,monocytes ,rheumatoid arthritis ,Immunologic diseases. Allergy ,RC581-607 - Abstract
Abstract Objectives The leading cause of mortality in patients with rheumatoid arthritis is atherosclerotic cardiovascular disease (CVD). We have shown that murine arthritis impairs atherosclerotic lesion regression, because of cellular cholesterol efflux defects in haematopoietic stem and progenitor cells (HSPCs), causing monocytosis and impaired atherosclerotic regression. Therefore, we hypothesised that improving cholesterol efflux using a Liver X Receptor (LXR) agonist would improve cholesterol efflux and improve atherosclerotic lesion regression in arthritis. Methods Ldlr−/− mice were fed a western‐type diet for 14 weeks to initiate atherogenesis, then switched to a chow diet to induce lesion regression and divided into three groups; (1) control, (2) K/BxN serum transfer inflammatory arthritis (K/BxN) or (3) K/BxN arthritis and LXR agonist T0901317 daily for 2 weeks. Results LXR activation during murine inflammatory arthritis completely restored atherosclerotic lesion regression in arthritic mice, evidenced by reduced lesion size, macrophage abundance and lipid content. Mechanistically, serum from arthritic mice promoted foam cell formation, demonstrated by increased cellular lipid accumulation in macrophages and paralleled by a reduction in mRNA of the cholesterol efflux transporters Abca1, Abcg1 and Apoe. T0901317 reduced lipid loading and increased Abca1 and Abcg1 expression in macrophages exposed to arthritic serum and increased ABCA1 levels in atherosclerotic lesions of arthritic mice. Moreover, arthritic clinical score was also attenuated with T0901317. Conclusion Taken together, we show that the LXR agonist T0901317 rescues impaired atherosclerotic lesion regression in murine arthritis because of enhanced cholesterol efflux transporter expression and reduced foam cell development in atherosclerotic lesions.
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- 2023
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186. CD98 defines a metabolically flexible, proinflammatory subset of low‐density neutrophils in systemic lupus erythematosus
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Katherine R. Martin, Jessica A. Day, Jacinta A. Hansen, Damian B. D'Silva, Huon L. Wong, Alexandra Garnham, Jarrod J. Sandow, Brunda Nijagal, Nicholas Wilson, and Ian P. Wicks
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CD98 ,granulocyte colony‐stimulating factor ,low‐density neutrophils ,systemic lupus erythematosus ,Medicine (General) ,R5-920 - Abstract
Abstract Background Low‐density neutrophils (LDN) are a distinct subset of neutrophils rarely detected in healthy people but appear in the blood of patients with autoimmune diseases, including systemic lupus erythematosus (SLE), and are mobilised in response to granulocyte colony‐stimulating factor (G‐CSF). The aim of this study was to identify novel mechanisms responsible for the pathogenic capacity of LDN in SLE. Methods Neutrophils were isolated from donors treated with G‐CSF, and whole‐cell proteomic analysis was performed on LDN and normal‐density neutrophils. Results CD98 is significantly upregulated in LDN from G‐CSF donors and defines a subset of LDN within the blood of SLE patients. CD98 is a transmembrane protein that dimerises with L‐type amino acid transporters. We show that CD98 is responsible for the increased bioenergetic capacity of LDN. CD98 on LDN mediates the uptake of essential amino acids that are used by mitochondria to produce adenosine triphosphate, especially in the absence of glucose. Inhibition of CD98 reduces the metabolic flexibility of this population, which may limit their pathogenic capacity. CD98+ LDN produce more proinflammatory cytokines and chemokines than their normal density counterparts and are resistant to apoptosis, which may also contribute to tissue inflammation and end organ damage in SLE. Conclusions CD98 provides a phenotypic marker for LDN that facilitates identification of this population without density‐gradient separation and represents a novel therapeutic target to limit its pathogenic capacity.
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- 2023
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187. Global Biobank analyses provide lessons for developing polygenic risk scores across diverse cohorts
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Ying Wang, Shinichi Namba, Esteban Lopera, Sini Kerminen, Kristin Tsuo, Kristi Läll, Masahiro Kanai, Wei Zhou, Kuan-Han Wu, Marie-Julie Favé, Laxmi Bhatta, Philip Awadalla, Ben Brumpton, Patrick Deelen, Kristian Hveem, Valeria Lo Faro, Reedik Mägi, Yoshinori Murakami, Serena Sanna, Jordan W. Smoller, Jasmina Uzunovic, Brooke N. Wolford, Cristen Willer, Eric R. Gamazon, Nancy J. Cox, Ida Surakka, Yukinori Okada, Alicia R. Martin, Jibril Hirbo, Kuan-Han H. Wu, Humaira Rasheed, Jibril B. Hirbo, Arjun Bhattacharya, Huiling Zhao, Esteban A. Lopera-Maya, Sinéad B. Chapman, Juha Karjalainen, Mitja Kurki, Maasha Mutaamba, Juulia J. Partanen, Ben M. Brumpton, Sameer Chavan, Tzu-Ting Chen, Michelle Daya, Yi Ding, Yen-Chen A. Feng, Christopher R. Gignoux, Sarah E. Graham, Whitney E. Hornsby, Nathan Ingold, Ruth Johnson, Triin Laisk, Kuang Lin, Jun Lv, Iona Y. Millwood, Priit Palta, Anita Pandit, Michael H. Preuss, Unnur Thorsteinsdottir, Matthew Zawistowski, Xue Zhong, Archie Campbell, Kristy Crooks, Geertruida H. de Bock, Nicholas J. Douville, Sarah Finer, Lars G. Fritsche, Christopher J. Griffiths, Yu Guo, Karen A. Hunt, Takahiro Konuma, Riccardo E. Marioni, Jansonius Nomdo, Snehal Patil, Nicholas Rafaels, Anne Richmond, Jonathan A. Shortt, Peter Straub, Ran Tao, Brett Vanderwerff, Kathleen C. Barnes, Marike Boezen, Zhengming Chen, Chia-Yen Chen, Judy Cho, George Davey Smith, Hilary K. Finucane, Lude Franke, Andrea Ganna, Tom R. Gaunt, Tian Ge, Hailiang Huang, Jennifer Huffman, Jukka T. Koskela, Clara Lajonchere, Matthew H. Law, Liming Li, Cecilia M. Lindgren, Ruth J.F. Loos, Stuart MacGregor, Koichi Matsuda, Catherine M. Olsen, David J. Porteous, Jordan A. Shavit, Harold Snieder, Richard C. Trembath, Judith M. Vonk, David Whiteman, Stephen J. Wicks, Cisca Wijmenga, John Wright, Jie Zheng, Xiang Zhou, Michael Boehnke, Daniel H. Geschwind, Caroline Hayward, Eimear E. Kenny, Yen-Feng Lin, Hilary C. Martin, Sarah E. Medland, Aarno V. Palotie, Bogdan Pasaniuc, Kari Stefansson, David A. van Heel, Robin G. Walters, Sebastian Zöllner, Cristen J. Willer, Mark J. Daly, and Benjamin M. Neale
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Global-Biobank Meta-analysis Initiative ,polygenic risk scores ,multi-ancestry genetic prediction ,accuracy heterogeneity ,Genetics ,QH426-470 ,Internal medicine ,RC31-1245 - Abstract
Summary: Polygenic risk scores (PRSs) have been widely explored in precision medicine. However, few studies have thoroughly investigated their best practices in global populations across different diseases. We here utilized data from Global Biobank Meta-analysis Initiative (GBMI) to explore methodological considerations and PRS performance in 9 different biobanks for 14 disease endpoints. Specifically, we constructed PRSs using pruning and thresholding (P + T) and PRS-continuous shrinkage (CS). For both methods, using a European-based linkage disequilibrium (LD) reference panel resulted in comparable or higher prediction accuracy compared with several other non-European-based panels. PRS-CS overall outperformed the classic P + T method, especially for endpoints with higher SNP-based heritability. Notably, prediction accuracy is heterogeneous across endpoints, biobanks, and ancestries, especially for asthma, which has known variation in disease prevalence across populations. Overall, we provide lessons for PRS construction, evaluation, and interpretation using GBMI resources and highlight the importance of best practices for PRS in the biobank-scale genomics era.
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- 2023
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188. Embodied Ecology; visualizing biological data with dance and technology, Abstract
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Wicks, Koryn Ann and Wallingford, Piper
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- 2018
189. Does reading a book in bed make a difference to sleep in comparison to not reading a book in bed? The People’s Trial—an online, pragmatic, randomised trial
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Elaine Finucane, Ann O’Brien, Shaun Treweek, John Newell, Kishor Das, Sarah Chapman, Paul Wicks, Sandra Galvin, Patricia Healy, Linda Biesty, Katie Gillies, Anna Noel-Storr, Heidi Gardner, Mary Frances O’Reilly, and Declan Devane
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Randomised trial ,Public engagement ,Online ,Methodology ,Research co-production ,Sleep ,Medicine (General) ,R5-920 - Abstract
Abstract Background The best way of comparing healthcare treatments is through a randomised trial. In a randomised trial, we compare something (a treatment or intervention) to something else, often another treatment. Who gets what is decided at random, meaning everyone has an equal chance of getting any of the treatments. This means any differences found can be put down to the treatment received rather than other things, such as where people live, or health conditions they might have. The People’s Trial aimed to help the public better understand randomised trials by inviting them to design and carry out a trial. The question chosen by the public for The People’s Trial was: ‘Does reading a book in bed make a difference to sleep, in comparison to not reading a book in bed?’ This paper describes that trial, called ‘The Reading Trial’. Methods The Reading Trial was an online, randomised trial. Members of the public were invited to take part through social media campaigns. People were asked to either read a book in bed before going to sleep (intervention group) or not read a book in bed before going to sleep (control group). We asked everyone to do this for 7 days, after which they measured their sleep quality. Results During December 2019, a total of 991 people took part in The Reading Trial, half (496 (50%)) in the intervention group and half (495 (50%)) in the control group. Not everyone finished the trial: 127 (25.6%) people in the intervention group and 90 (18.18%) people in the control group. Of those providing data, 156/369 (42%) people in the intervention group felt their sleep improved, compared to 112/405 (28%) of those in the control group, a difference of 14%. When we consider how certain we are of this finding, we estimate that, in The Reading Trial, sleep improved for between 8 and 22% more people in the intervention group compared to the control group. Conclusions Reading a book in bed before going to sleep improved sleep quality, compared to not reading a book in bed. Trial registration ClinicalTrials.gov NCT04185818. Registered on 4 December 2019.
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- 2021
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190. Sirtuin inhibition is synthetic lethal with BRCA1 or BRCA2 deficiency
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Ilirjana Bajrami, Callum Walker, Dragomir B. Krastev, Daniel Weekes, Feifei Song, Andrew J. Wicks, John Alexander, Syed Haider, Rachel Brough, Stephen J. Pettitt, Andrew N. J. Tutt, and Christopher J. Lord
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Biology (General) ,QH301-705.5 - Abstract
Bajrami, Walker et al. investigated the synthetic lethality between BRCA gene defects and inhibition of two sirtuin genes, SIRT1 or SIRT6, which was found to be associated with replication stress and increased PARylation. The authors demonstrated that the SIRT/BRCA1 synthetic lethality was reversed by genetic ablation of PARP1 or HPF1.
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- 2021
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191. An end of range orthosis to manage axilla contracture
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Stephanie Wicks, Rhianydd Thomas, and Claire Toose
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Dermatology ,RL1-803 ,Medical emergencies. Critical care. Intensive care. First aid ,RC86-88.9 - Published
- 2021
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192. An end of range extension orthosis to manage burn scar contracture to the palmar aspect of the hand in young children
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Stephanie Wicks, Rhianydd Thomas, Claire Toose, and Madeleine Jacques
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Dermatology ,RL1-803 ,Medical emergencies. Critical care. Intensive care. First aid ,RC86-88.9 - Published
- 2021
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193. Incremental value of left atrial booster and reservoir strain in predicting atrial fibrillation in patients with hypertrophic cardiomyopathy: a cardiovascular magnetic resonance study
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Betty Raman, Robert W. Smillie, Masliza Mahmod, Kenneth Chan, Rina Ariga, Chrysovalantou Nikolaidou, Elizabeth Ormondroyd, Kate Thomson, Andrew R. Harper, Gifford Tan, Adam J. Lewandowski, Fernando Rodriguez Bajo, Eleanor C. Wicks, Barbara Casadei, Hugh Watkins, and Stefan Neubauer
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Hypertrophic cardiomyopathy ,Atrial fibrillation ,Cardiovascular magnetic resonance imaging ,Left atrial strain ,Booster strain ,Reservoir strain ,Diseases of the circulatory (Cardiovascular) system ,RC666-701 - Abstract
Abstract Background Left atrial (LA) size and function are known predictors of new onset atrial fibrillation (AF) in hypertrophic cardiomyopathy (HCM) patients. Components of LA deformation including reservoir, conduit, and booster function provide additional information on atrial mechanics. Whether or not LA deformation can augment our ability to predict the risk of new onset AF in HCM patients beyond standard measurements is unknown. Methods We assessed LA size, function, and deformation on cardiovascular magnetic resonance (CMR) in 238 genotyped HCM patients and compared this with twenty age, sex, blood pressure and body mass index matched control subjects. We further evaluated the determinants of new onset AF in HCM patients. Results Compared to control subjects, HCM patients had higher LA antero-posterior diameter, lower LA ejection fraction and lower LA reservoir (19.9 [17.1, 22.2], 21.6 [19.9, 22.9], P = 0.047) and conduit strain (10.6 ± 4.4, 13.7 ± 3.3, P = 0.002). LA booster strain did not differ between healthy controls and HCM patients, but HCM patients who developed new onset AF (n = 33) had lower booster strain (7.6 ± 3.3, 9.5 ± 3.0, P = 0.001) than those that did not (n = 205). In separate multivariate models, age, LA ejection fraction, and LA booster and reservoir strain were each independent determinants of AF. Age ≥ 55 years was the strongest determinant (HR 6.62, 95% CI 2.79–15.70), followed by LA booster strain ≤ 8% (HR 3.69, 95% CI 1.81–7.52) and LA reservoir strain ≤ 18% (HR 2.56, 95% CI 1.24–5.27). Conventional markers of HCM phenotypic severity, age and sudden death risk factors were associated with LA strain components. Conclusions LA strain components are impaired in HCM and, together with age, independently predicted the risk of new onset AF. Increasing age and phenotypic severity were associated with LA strain abnormalities. Our findings suggest that the routine assessment of LA strain components and consideration of age could augment LA size in predicting risk of AF, and potentially guide prophylactic anticoagulation use in HCM.
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- 2021
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194. Host methylation predicts SARS-CoV-2 infection and clinical outcome
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Iain R. Konigsberg, Bret Barnes, Monica Campbell, Elizabeth Davidson, Yingfei Zhen, Olivia Pallisard, Meher Preethi Boorgula, Corey Cox, Debmalya Nandy, Souvik Seal, Kristy Crooks, Evan Sticca, Genelle F. Harrison, Andrew Hopkinson, Alexis Vest, Cosby G. Arnold, Michael G. Kahn, David P. Kao, Brett R. Peterson, Stephen J. Wicks, Debashis Ghosh, Steve Horvath, Wanding Zhou, Rasika A. Mathias, Paul J. Norman, Rishi Porecha, Ivana V. Yang, Christopher R. Gignoux, Andrew A. Monte, Alem Taye, and Kathleen C. Barnes
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Medicine - Abstract
Konigsberg et al. profile DNA methylation in blood samples from SARS-CoV-2 cases and controls. The authors use machine learning to classify infected vs. non-infected individuals and predict clinical outcomes related to disease severity.
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- 2021
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195. Melanic pigmentation and light preference within and between two Drosophila species
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Arielle M. Cooley, Suzanne Schmitz, Eduardo J. Cabrera, Mitchell Cutter, Maxwell Sheffield, Ian Gingerich, Gabriella Thomas, Calvin N. M. Lincoln, Virginia H. Moore, Alexandra E. Moore, Sarah A. Davidson, Nikhil Lonberg, Eli B. Fournier, Sophia M. Love, Galen Posch, Matthew B. Bihrle, Spencer D. Mayer, Kuenzang Om, Lauren Wilson, Casey Q. Doe, Chantalle E. Vincent, Elizabeth R. T. Wong, Ilona Wall, Jarred Wicks, and Stephon Roberts
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behavioral choice experiment ,correlated traits ,Drosophila americana ,Drosophila novamexicana ,ebony ,histamine ,Ecology ,QH540-549.5 - Abstract
Abstract Environmental adaptation and species divergence often involve suites of co‐evolving traits. Pigmentation in insects presents a variable, adaptive, and well‐characterized class of phenotypes for which correlations with multiple other traits have been demonstrated. In Drosophila, the pigmentation genes ebony and tan have pleiotropic effects on flies' response to light, creating the potential for correlated evolution of pigmentation and vision. Here, we investigate differences in light preference within and between two sister species, Drosophila americana and D. novamexicana, which differ in pigmentation in part because of evolution at ebony and tan and occupy environments that differ in many variables including solar radiation. We hypothesized that lighter pigmentation would be correlated with a greater preference for environmental light and tested this hypothesis using a habitat choice experiment. In a first set of experiments, using males of D. novamexicana line N14 and D. americana line A00, the light‐bodied D. novamexicana was found slightly but significantly more often than D. americana in the light habitat. A second experiment, which included additional lines and females as well as males, failed to find any significant difference between D. novamexicana‐N14 and D. americana‐A00. Additionally, the other dark line of D. americana (A04) was found in the light habitat more often than the light‐bodied D. novamexicana‐N14, in contrast to our predictions. However, the lightest line of D. americana, A01, was found substantially and significantly more often in the light habitat than the two darker lines of D. americana, thus providing partial support for our hypothesis. Finally, across all four lines, females were found more often in the light habitat than their more darkly pigmented male counterparts. Additional replication is needed to corroborate these findings and evaluate conflicting results, with the consistent effect of sex within and between species providing an especially intriguing avenue for further research.
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- 2021
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196. Spheres of Influence: A Walzerian Approach to Business Ethics
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Wicks, Andrew C., Werhane, Patricia H., Elms, Heather, and Nolan, John
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- 2021
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197. Preparing for the unexpected in a COVID-19 world: The teaching dilemmas of a mid-semester faculty change
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Deborah M. Gray, Jeremy T. Bond, Jessica M. Wicks, and Nancy Hicks
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crisis, COVID-19 ,pandemic ,mid-semester faculty change, teaching ,turnover ,instructional support ,Education - Abstract
Despite the perceived rarity of mid-semester faculty changes, there is a shortage of literature to guide administrators and faculty on best practices for handing the dilemmas associated with mid-semester faculty changes. This is particularly concerning given the uncertainty of situations like the COVID-19 global pandemic and recent research that finds that future extreme epidemics are likely to happen. This paper seeks to answer two questions (1) What can faculty and administrators do to prepare students who are experiencing a mid-semester faculty change, and (2) What procedures and processes are in place to assist the incoming faculty? Data were collected through a survey of students who had underwent a mid-semester faculty change and interviews with administrators who deal with personnel issues like this one. The data suggest faculty should first meet with students to assess their progress before jumping into an established lesson plan (the opposite of how faculty normally prepare to teach a class). Clear communication about expectations, organization of the course materials, and instructor flexibility was identified as keys to student success during a teaching disruption. These findings align with decades of research on teaching and learning. Administrators should create contingency plans that go beyond the personnel transaction and that help faculty quickly prepare for a transition that is student focused. More research is needed to identify the best administrative processes and procedures to assist faculty in a smooth transition when taking over a course mid-semester. Received: 14 September 2021 Accepted: 29 September 2022
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- 2022
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198. STELLA—Potential European contributions to a NASA-led interstellar probe
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Robert F. Wimmer-Schweingruber, Nicolas André, Stanislav Barabash, Pontus C. Brandt, Timothy S. Horbury, Luciano Iess, Benoit Lavraud, Ralph L. McNutt, Elena A. Provornikova, Eric Quémerais, Robert Wicks, Martin Wieser, and Peter Wurz
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mission proposal ,interstellar probe ,space science ,solar system ,very local interstellar medium ,fundamental physics ,Astronomy ,QB1-991 ,Geophysics. Cosmic physics ,QC801-809 - Abstract
The discovery of a myriad of exoplanets in the past decades has revolutionized the understanding of our place in the Universe. How different are exoplants and do some of them harbor life, just like Earth? To do so, their parent stars must drive a stellar wind and carve what we call astrospheres into the surrounding interstellar medium. Astrospheres are ubiquitous in our immediate neighborhood and show similar structure to our heliosphere. Voyager 1 and 2, Ulysses, Cassini, and IBEX have shown that the interaction between interstellar medium and solar wind is much more complex and involved than previously believed. This stellar-interstellar interaction is key to understand astrospheres and the shielding they provide to the planetary systems they harbor. This article summarizes a whitepaper that was submitted to NASA’s 2023/2024 decadal survey which is being conducted by the US National Academies. It is based in parts on a proposal submitted to the European Space Agency (ESA) in response to its 2021 call for medium-class mission proposals. The whitepaper and this article propose to study the interaction described above in situ at the heliospheric boundaries and to explore the very local interstellar medium beyond. Furthermore, they highlight possible European contributions to a NASA-led Interstellar Probe (ISP).
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- 2022
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199. Measures of Three-Dimensional Anisotropy and Intermittency in Strong Alfv\'enic Turbulence
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Mallet, A., Schekochihin, A. A., Chandran, B. D. G., Chen, C. H. K., Horbury, T. S., Wicks, R. T., and Greenan, C. C.
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Astrophysics - Solar and Stellar Astrophysics - Abstract
We measure the local anisotropy of numerically simulated strong Alfv\'enic turbulence with respect to two local, physically relevant directions: along the local mean magnetic field and along the local direction of one of the fluctuating Elsasser fields. We find significant scaling anisotropy with respect to both these directions: the fluctuations are "ribbon-like" --- statistically, they are elongated along both the mean magnetic field and the fluctuating field. The latter form of anisotropy is due to scale-dependent alignment of the fluctuating fields. The intermittent scalings of the $n$th-order conditional structure functions in the direction perpendicular to both the local mean field and the fluctuations agree well with the theory of Chandran et al. 2015, while the parallel scalings are consistent with those implied by the critical-balance conjecture. We quantify the relationship between the perpendicular scalings and those in the fluctuation and parallel directions, and find that the scaling exponent of the perpendicular anisotropy (i.e., of the aspect ratio of the Alfv\'enic structures in the plane perpendicular to the mean magnetic field) depends on the amplitude of the fluctuations. This is shown to be equivalent to the anticorrelation of fluctuation amplitude and alignment at each scale. The dependence of the anisotropy on amplitude is shown to be more significant for the anisotropy between the perpendicular and fluctuation-direction scales than it is between the perpendicular and parallel scales., Comment: 9 pages, 5 figures. Submitted to MNRAS
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- 2015
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200. Postmortem Metabolism and Pork Quality Development Are Affected by Electrical Stimulation across Three Genetic Lines
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Matthew D. Spires, Jocelyn S. Bodmer, Mariane Beline, Jordan C. Wicks, Morgan D. Zumbaugh, Tim Hao Shi, Brian T. Reichert, Allan P. Schinckel, Alan L. Grant, and David E. Gerrard
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genetics ,glycolysis ,glycogen ,pH ,pork quality ,Veterinary medicine ,SF600-1100 ,Zoology ,QL1-991 - Abstract
Variations in postmortem metabolism in muscle impact pork quality development. Curiously, some genetic lines are more refractile to adverse pork quality development than others and may regulate energy metabolism differently. The aim of this study was to challenge pork carcasses from different genetic populations with electrical stimulation (ES) to determine how postmortem metabolism varies with genetic line and explore control points that reside in glycolysis in dying muscle. Three genetic populations (GP) were subjected to ES (100 V or 200 V, 13 pulses, 2 s on/2 s off) at 15- or 25-min post-exsanguination, or no stimulation (NS). Genetic population affected relative muscle relative abundance of different myosin heavy chains, glycogen, G6P, and lactate concentrations. Genetic lines responded similarly to ES, but a comparison of ES treatment groups revealed a trend for an interaction between voltage, time of ES, and time postmortem. Higher voltage accelerated pH decline at 20 min up to 60 min postmortem. Trends in color and firmness scores and L* values were consistent with pH and metabolite data. These data show that genetic populations respond differently to postmortem perturbation by altering glycolytic flux and suggest differences in postmortem glycolysis may be partially responsible for differences in meat quality between genetic populations, though not entirely.
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- 2023
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