331 results on '"Vilaça, João L."'
Search Results
152. Automatic Prebent Customized Prosthesis for Pectus Excavatum Minimally Invasive Surgery Correction
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Vilaça, João L., primary, Rodrigues, Pedro L., additional, Soares, Tony R., additional, Fonseca, Jaime C., additional, Pinho, António CM, additional, Henriques-Coelho, Tiago, additional, and Correia-Pinto, Jorge, additional
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- 2013
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153. Variations of the soft tissue thicknesses external to the ribs in Pectus Excavatum patients
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Rodrigues, Pedro L., primary, Direito-Santos, Bruno, additional, Moreira, António H.J., additional, Fonseca, Jaime C., additional, Pinho, A.C.M., additional, Rodrigues, Nuno F., additional, Henriques-Coelho, Tiago, additional, Correia-Pinto, Jorge, additional, and Vilaça, João L., additional
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- 2013
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154. Kidney Targeting and Puncturing During Percutaneous Nephrolithotomy: Recent Advances and Future Perspectives
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Rodrigues, Pedro L., primary, Rodrigues, Nuno F., additional, Fonseca, Jaime, additional, Lima, Estevão, additional, and Vilaça, João L., additional
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- 2013
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155. Multi-centre validation of an automatic algorithm for fast 4D myocardial segmentation in cine CMR datasets.
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Queirós, Sandro, Barbosa, Daniel, Engvall, Jan, Ebbers, Tino, Nagel, Eike, Sarvari, Sebastian I., Claus, Piet, Fonseca, Jaime C., Vilaça, João L., and D'hooge, Jan
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Aims Quantitative analysis of cine cardiac magnetic resonance (CMR) images for the assessment of global left ventricular morphology and function remains a routine task in clinical cardiology practice. To date, this process requires user interaction and therefore prolongs the examination (i.e. cost) and introduces observer variability. In this study, we sought to validate the feasibility, accuracy, and time efficiency of a novel framework for automatic quantification of left ventricular global function in a clinical setting. Methods and results Analyses of 318 CMR studies, acquired at the enrolment of patients in a multi-centre imaging trial (DOPPLER-CIP), were performed automatically, as well as manually. For comparative purposes, intra- and inter-observer variability was also assessed in a subset of patients. The extracted morphological and functional parameters were compared between both analyses, and time efficiency was evaluated. The automatic analysis was feasible in 95% of the cases (302/ 318) and showed a good agreement with manually derived reference measurements, with small biases and narrow limits of agreement particularly for end-diastolic volume ( - 4.08 ± 8.98 mL), end-systolic volume (1.18 ± 9.74 mL), and ejection fraction ( -1.53 ± 4.93%). These results were comparable with the agreement between two independent observers. A complete automatic analysis took 5.61 ± 1.22 s, which is nearly 150 times faster than manual contouring (14 ±2 min, P <0.05). Conclusion The proposed automatic framework provides a fast, robust, and accurate quantification of relevant left ventricular clinical indices in 'real-world' cine CMR images. [ABSTRACT FROM AUTHOR]
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- 2016
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156. Assessment of Laparoscopic Skills Performance: 2D Versus 3D Vision and Classic Instrument Versus New Hand-Held Robotic Device for Laparoscopy.
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Leite, Mariana, Carvalho, Ana F., Costa, Patrício, Pereira, Ricardo, Moreira, Antonio, Rodrigues, Nuno, Laureano, Sara, Correia-Pinto, Jorge, Vilaça, João L., and Leão, Pedro
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EDUCATION of surgeons ,CLINICAL competence ,ERGONOMICS ,LAPAROSCOPY ,SURGEONS ,SURGICAL robots ,EQUIPMENT & supplies - Abstract
Introduction and Objectives: Laparoscopic surgery has undeniable advantages, such as reduced postoperative pain, smaller incisions, and faster recovery. However, to improve surgeons' performance, ergonomic adaptations of the laparoscopic instruments and introduction of robotic technology are needed. The aim of this study was to ascertain the influence of a new hand-held robotic device for laparoscopy (HHRDL) and 3D vision on laparoscopic skills performance of 2 different groups, naïve and expert.Materials and Methods: Each participant performed 3 laparoscopic tasks-Peg transfer, Wire chaser, Knot-in 4 different ways. With random sequencing we assigned the execution order of the tasks based on the first type of visualization and laparoscopic instrument. Time to complete each laparoscopic task was recorded and analyzed with one-way analysis of variance.Results: Eleven experts and 15 naïve participants were included. Three-dimensional video helps the naïve group to get better performance in Peg transfer, Wire chaser 2 hands, and Knot; the new device improved the execution of all laparoscopic tasks (P < .05). For expert group, the 3D video system benefited them in Peg transfer and Wire chaser 1 hand, and the robotic device in Peg transfer, Wire chaser 1 hand, and Wire chaser 2 hands (P < .05).Conclusion: The HHRDL helps the execution of difficult laparoscopic tasks, such as Knot, in the naïve group. Three-dimensional vision makes the laparoscopic performance of the participants without laparoscopic experience easier, unlike those with experience in laparoscopic procedures. [ABSTRACT FROM AUTHOR]- Published
- 2016
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157. Automatic segmentation and 3D feature extraction of protein aggregates in Caenorhabditis elegans
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Rodrigues, Pedro L., primary, Moreira, António H. J., additional, Teixeira-Castro, Andreia, additional, Oliveira, João, additional, Dias, Nuno, additional, Rodrigues, Nuno F., additional, and Vilaça, João L., additional
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- 2012
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158. Thoracic wall reconstruction using ultrasound images to model/bend the thoracic prosthesis for correction of pectus excavatum
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Fonseca, João Gomes, primary, Moreira, Antonio H. J., additional, Rodrigues, Pedro L., additional, Fonseca, Jaime C., additional, Pinho, A. C. M., additional, Correia-Pinto, Jorge, additional, Rodrigues, Nuno F., additional, and Vilaça, João L., additional
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- 2012
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159. Pectus excavatum postsurgical outcome based on preoperative soft body dynamics simulation
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Moreira, Antonio H. J., primary, Rodrigues, Pedro L., additional, Fonseca, Jaime, additional, Pinho, A. C. M., additional, Rodrigues, Nuno F., additional, Correia-Pinto, Jorge, additional, and Vilaça, João L., additional
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- 2012
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160. Virtual simulation of the postsurgical cosmetic outcome in patients with Pectus Excavatum
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Vilaça, João L., primary, Moreira, António H. J., additional, L-Rodrigues, Pedro, additional, Rodrigues, Nuno, additional, Fonseca, Jaime C., additional, Pinho, A. C. M., additional, and Correia-Pinto, Jorge, additional
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- 2011
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161. A Digital Game Development Education Project
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Rodrigues, Nuno F., primary, Simões, Ricardo, additional, and Vilaça, João L., additional
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- 2010
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162. Non-contact 3D acquisition system based on stereo vision and laser triangulation
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Vilaça, João L., primary, Fonseca, Jaime C., additional, and Pinho, António M., additional
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- 2009
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163. 3D segmentation of the left atrial appendage in computed tomography for planning of transcatheter occlusion.
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Morais, Pedro, Nelles, Dominik, Wilko Schrickel, Jan, Nickenig, Georg, D'hooge, Jan, Sedaghat, Alexander, and Vilaça, João L.
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- 2022
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164. Fetal head circumference delineation using convolutional neural networks with registration-based ellipse fitting.
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Torres, Helena R., Oliveira, Bruno, Morais, Pedro R., Fritze, Anne, Birdir, Cahit, Rüdiger, Mario, Fonseca, Jaime C., and Vilaça, João L.
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- 2021
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165. Automatic Prebent Customized Prosthesis for Pectus Excavatum Minimally Invasive Surgery Correction.
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Vilaça, João L., Rodrigues, Pedro L., Soares, Tony R., Fonseca, Jaime C., Pinho, António CM, Henriques-Coelho, Tiago, and Correia-Pinto, Jorge
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Pectus excavatum is the most common deformity of the thorax. A minimally invasive surgical correction is commonly carried out to remodel the anterior chest wall by using an intrathoracic convex prosthesis in the substernal position. The process of prosthesis modeling and bending still remains an area of improvement. The authors developed a new system, i3DExcavatum, which can automatically model and bend the bar preoperatively based on a thoracic CT scan. This article presents a comparison between automatic and manual bending. The i3DExcavatum was used to personalize prostheses for 41 patients who underwent pectus excavatum surgical correction between 2007 and 2012. Regarding the anatomical variations, the soft-tissue thicknesses external to the ribs show that both symmetric and asymmetric patients always have asymmetric variations, by comparing the patients’ sides. It highlighted that the prosthesis bar should be modeled according to each patient’s rib positions and dimensions. The average differences between the skin and costal line curvature lengths were 84 ± 4 mm and 96 ± 11 mm, for male and female patients, respectively. On the other hand, the i3DExcavatum ensured a smooth curvature of the surgical prosthesis and was capable of predicting and simulating a virtual shape and size of the bar for asymmetric and symmetric patients. In conclusion, the i3DExcavatum allows preoperative personalization according to the thoracic morphology of each patient. It reduces surgery time and minimizes the margin error introduced by the manually bent bar, which only uses a template that copies the chest wall curvature. [ABSTRACT FROM PUBLISHER]
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- 2014
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166. Improving the robustness of interventional 4D ultrasound segmentation through the use of personalized prior shape models
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Ourselin, Sébastien, Styner, Martin A., Barbosa, Daniel, Queirós, Sandro, Morais, Pedro, Baptista, Maria J., Monaghan, Mark, Rodrigues, Nuno F., D'hooge, Jan, and Vilaça, João L.
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- 2015
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167. Robust temporal alignment of multimodal cardiac sequences
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Ourselin, Sébastien, Styner, Martin A., Perissinotto, Andrea, Queirós, Sandro, Morais, Pedro, Baptista, Maria J., Monaghan, Mark, Rodrigues, Nuno F., D'hooge, Jan, Vilaça, João L., and Barbosa, Daniel
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- 2015
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168. Voxel-based registration of simulated and real patient CBCT data for accurate dental implant pose estimation
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Hadjiiski, Lubomir M., Tourassi, Georgia D., Moreira, António H. J., Queirós, Sandro, Morais, Pedro, Rodrigues, Nuno F., Correia, André Ricardo, Fernandes, Valter, Pinho, A. C. M., Fonseca, Jaime C., and Vilaça, João L.
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- 2015
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169. Computer-aided recognition of dental implants in X-ray images
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Hadjiiski, Lubomir M., Tourassi, Georgia D., Morais, Pedro, Queirós, Sandro, Moreira, António H. J., Ferreira, Adriano, Ferreira, Ernesto, Duque, Duarte, Rodrigues, Nuno F., and Vilaça, João L.
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- 2015
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170. Validation of percutaneous puncture trajectory during renal access using 4D ultrasound reconstruction
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Yaniv, Ziv R., Webster, Robert J., Rodrigues, Pedro L., Rodrigues, Nuno F., Fonseca, Jaime C., and Vilaça, João L.
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- 2015
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171. A-scan ultrasound system for real-time puncture safety assessment during percutaneous nephrolithotomy
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Bosch, Johan G., Duric, Neb, Rodrigues, Pedro L., Rodrigues, Nuno F., Fonseca, Jaime C., von Krüger, M. A., Pereira, W. C. A., and Vilaça, João L.
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- 2015
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172. Artificial neural networks for automatic modelling of the pectus excavatumcorrective prosthesis
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Aylward, Stephen, Hadjiiski, Lubomir M., Rodrigues, Pedro L., Moreira, António H.J., Rodrigues, Nuno F., Pinho, ACM, Fonseca, Jaime C., Correia-Pinto, Jorge, and Vilaça, João L.
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- 2014
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173. Pectus excavatumpostsurgical outcome based on preoperative soft body dynamics simulation
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Moreira, Antonio H. J., Rodrigues, Pedro L., Fonseca, Jaime, Pinho, A. C. M., Rodrigues, Nuno F., Correia-Pinto, Jorge, and Vilaça, João L.
- Abstract
Pectus excavatum is the most common congenital deformity of the anterior chest wall, in which an abnormal formation of the rib cage gives the chest a caved-in or sunken appearance. Today, the surgical correction of this deformity is carried out in children and adults through Nuss technic, which consists in the placement of a prosthetic bar under the sternum and over the ribs. Although this technique has been shown to be safe and reliable, not all patients have achieved adequate cosmetic outcome. This often leads to psychological problems and social stress, before and after the surgical correction. This paper targets this particular problem by presenting a method to predict the patient surgical outcome based on pre-surgical imagiologic information and chest skin dynamic modulation. The proposed approach uses the patient pre-surgical thoracic CT scan and anatomical-surgical references to perform a 3D segmentation of the left ribs, right ribs, sternum and skin. The technique encompasses three steps: a) approximation of the cartilages, between the ribs and the sternum, trough b-spline interpolation; b) a volumetric mass spring model that connects two layers - inner skin layer based on the outer pleura contour and the outer surface skin; and c) displacement of the sternum according to the prosthetic bar position. A dynamic model of the skin around the chest wall region was generated, capable of simulating the effect of the movement of the prosthetic bar along the sternum. The results were compared and validated with patient postsurgical skin surface acquired with Polhemus FastSCAN system.
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- 2012
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174. Targeting lactate transport suppresses in vivo breast tumour growth
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Morais-Santos, Filipa, Granja, Sara, Miranda-Gonçalves, Vera, Moreira, António H. J., Queirós, Sandro, Vilaça, João L., and Fernando Schmitt
175. Deep learning-based detection of anthropometric landmarks in 3D infants head models
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Mori, Kensaku, Hahn, Horst K., Torres, Helena R., Oliveira, Bruno, Veloso, Fernando, Ruediger, Mario, Burkhardt, Wolfram, Moreira, António, Dias, Nuno, Morais, Pedro, Fonseca, Jaime C., and Vilaça, João L.
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- 2019
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176. Semi-automatic aortic valve tract segmentation in 3D cardiac magnetic resonance images using shape-based B-spline explicit active surfaces
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Angelini, Elsa D., Landman, Bennett A., Queirós, Sandro, Morais, Pedro, Fonseca, Jaime C., D'hooge, Jan, and Vilaça, João L.
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- 2019
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177. Fast left ventricle tracking in CMR images using localized anatomical affine optical flow
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Ourselin, Sébastien, Styner, Martin A., Queirós, Sandro, Vilaça, João L., Morais, Pedro, Fonseca, Jaime C., D’hooge, Jan, and Barbosa, Daniel
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- 2015
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178. Preliminary clinical trial in percutaneous nephrolithotomy using a real-time navigation system for percutaneous kidney access
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Yaniv, Ziv R., Holmes, David R., Rodrigues, Pedro L., Moreira, António H. J., Rodrigues, Nuno F., Pinho, A. C. M., Fonseca, Jaime C., Lima, Estevão, and Vilaça, João L.
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- 2014
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179. Fast automatic myocardial segmentation in 4D cine CMR datasets.
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Queirós, Sandro, Barbosa, Daniel, Heyde, Brecht, Morais, Pedro, Vilaça, João L., Friboulet, Denis, Bernard, Olivier, and D’hooge, Jan
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MYOCARDIAL perfusion imaging , *CARDIAC magnetic resonance imaging , *LEFT heart ventricle , *HEART beat , *IMAGE analysis , *SET theory - Abstract
A novel automatic 3D+time left ventricle (LV) segmentation framework is proposed for cardiac magnetic resonance (CMR) datasets. The proposed framework consists of three conceptual blocks to delineate both endo and epicardial contours throughout the cardiac cycle: (1) an automatic 2D mid-ventricular initialization and segmentation; (2) an automatic stack initialization followed by a 3D segmentation at the end-diastolic phase; and (3) a tracking procedure. Hereto, we propose to adapt the recent B-spline Explicit Active Surfaces (BEAS) framework to the properties of CMR images by integrating dedicated energy terms. Moreover, we extend the coupled BEAS formalism towards its application in 3D MR data by adapting it to a cylindrical space suited to deal with the topology of the image data. Furthermore, a fast stack initialization method is presented for efficient initialization and to enforce consistent cylindrical topology. Finally, we make use of an anatomically constrained optical flow method for temporal tracking of the LV surface. The proposed framework has been validated on 45 CMR datasets taken from the 2009 MICCAI LV segmentation challenge. Results show the robustness, efficiency and competitiveness of the proposed method both in terms of accuracy and computational load. [ABSTRACT FROM AUTHOR]
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- 2014
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180. Automated segmentation of normal and diseased coronary arteries – The ASOCA challenge.
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Gharleghi, Ramtin, Adikari, Dona, Ellenberger, Katy, Ooi, Sze-Yuan, Ellis, Chris, Chen, Chung-Ming, Gao, Ruochen, He, Yuting, Hussain, Raabid, Lee, Chia-Yen, Li, Jun, Ma, Jun, Nie, Ziwei, Oliveira, Bruno, Qi, Yaolei, Skandarani, Youssef, Vilaça, João L., Wang, Xiyue, Yang, Sen, and Sowmya, Arcot
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CORONARY artery disease , *CORONARY arteries , *CORONARY angiography , *COMPUTED tomography , *CARDIOVASCULAR diseases , *MACHINE learning - Abstract
Cardiovascular disease is a major cause of death worldwide. Computed Tomography Coronary Angiography (CTCA) is a non-invasive method used to evaluate coronary artery disease, as well as evaluating and reconstructing heart and coronary vessel structures. Reconstructed models have a wide array of for educational, training and research applications such as the study of diseased and non-diseased coronary anatomy, machine learning based disease risk prediction and in-silico and in-vitro testing of medical devices. However, coronary arteries are difficult to image due to their small size, location, and movement, causing poor resolution and artefacts. Segmentation of coronary arteries has traditionally focused on semi-automatic methods where a human expert guides the algorithm and corrects errors, which severely limits large-scale applications and integration within clinical systems. International challenges aiming to overcome this barrier have focussed on specific tasks such as centreline extraction, stenosis quantification, and segmentation of specific artery segments only. Here we present the results of the first challenge to develop fully automatic segmentation methods of full coronary artery trees and establish the first large standardized dataset of normal and diseased arteries. This forms a new automated segmentation benchmark allowing the automated processing of CTCAs directly relevant for large-scale and personalized clinical applications. [Display omitted] • Virtual coronary artery models of have been increasingly used in research and clinical settings. • Standardized dataset of coronary artery ground truth allows objective comparison of new methods. • ASOCA challenge provides automated testing and evaluation framework. [ABSTRACT FROM AUTHOR]
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- 2022
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181. A review of image processing methods for fetal head and brain analysis in ultrasound images.
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Torres, Helena R., Morais, Pedro, Oliveira, Bruno, Birdir, Cahit, Rüdiger, Mario, Fonseca, Jaime C., and Vilaça, João L.
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IMAGE processing , *IMAGE analysis , *FETAL ultrasonic imaging , *FETAL brain , *ULTRASONIC imaging , *THREE-dimensional imaging , *FETAL anatomy - Abstract
• A comprehensive review of image processing methods for fetal head and brain analysis in ultrasound images is provided. • Five application areas: fetal head, brain structures, standard anatomical planes, development analysis, image enhancement. • Division of the reviewed methods according to their theoretical approach. • A detailed analysis of the methods and comparison of different approaches is provided. • Identification of future research topics. Examination of head shape and brain during the fetal period is paramount to evaluate head growth, predict neurodevelopment, and to diagnose fetal abnormalities. Prenatal ultrasound is the most used imaging modality to perform this evaluation. However, manual interpretation of these images is challenging and thus, image processing methods to aid this task have been proposed in the literature. This article aims to present a review of these state-of-the-art methods. In this work, it is intended to analyze and categorize the different image processing methods to evaluate fetal head and brain in ultrasound imaging. For that, a total of 109 articles published since 2010 were analyzed. Different applications are covered in this review, namely analysis of head shape and inner structures of the brain, standard clinical planes identification, fetal development analysis, and methods for image processing enhancement. For each application, the reviewed techniques are categorized according to their theoretical approach, and the more suitable image processing methods to accurately analyze the head and brain are identified. Furthermore, future research needs are discussed. Finally, topics whose research is lacking in the literature are outlined, along with new fields of applications. A multitude of image processing methods has been proposed for fetal head and brain analysis. Summarily, techniques from different categories showed their potential to improve clinical practice. Nevertheless, further research must be conducted to potentiate the current methods, especially for 3D imaging analysis and acquisition and for abnormality detection. [ABSTRACT FROM AUTHOR]
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- 2022
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182. Identifying opportunities for AI applications in healthcare — Renewing the national healthcare and social services
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Minna Silvennoinen, Anniina Ala-Kitula, Karoliina Talvitie-Lamberg, Pasi Tyrväinen, Reija Kuoremäki, Vilaça, João L., Grechenig, Thomas, Duque, Duarte, Rodrigues, Nuno, and Dias, Nuno
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Knowledge management ,Computer science ,Process (engineering) ,terveysteknologia ,Design thinking ,Social Welfare ,health and social care renewal ,artificial intelligence capabilities ,IBM Watson ,tekoäly ,0603 philosophy, ethics and religion ,03 medical and health sciences ,0302 clinical medicine ,design thinking ,terveysala ,sosiaalihuolto ,Use case ,030212 general & internal medicine ,sovellukset (tietotekniikka) ,Design methods ,ta113 ,business.industry ,citizen wellbeing ,06 humanities and the arts ,Business value ,Variety (cybernetics) ,use-cases ,uudistukset ,060301 applied ethics ,Applications of artificial intelligence ,business ,application prototype development ,hyvinvointiala - Abstract
A vast variety of artificial intelligence techniques have been deployed to specific healthcare problems during the last thirty years with varying levels of success while there is a shortage of systematic matching of AI capabilities with the breadth of application opportunities. In this paper, we describe the process of identifying opportunities for deploying artificial intelligence to healthcare and social services on regional and national levels in Finland. The project involved a large number of stakeholders from a variety of backgrounds ranging from governmental agencies to entrepreneurs. The process described includes idea generation of an application or solution and its elaboration in workshops using a design thinking method. The resulting idea pool was filtered down to 34 best use case descriptions, which went through an architectural design process identifying AI capabilities needed in the components of these designs reported in this paper. The potential ones of the use cases were selected for prototype development. The subsequent steps in the process include feasibility prototypes and evaluation of the economic and business value of the solutions and applications. peerReviewed
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- 2018
183. Determinação da grade costal em pacientes com pectus excavatum utilizando técnicas imagiológicas sem radiação
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Fonseca, João Luís Gomes, Fonseca, Jaime C., Vilaça, João L., and Universidade do Minho
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616.723 ,616-073 - Abstract
Dissertação de mestrado integrado em Engenharia Biomédica (área de especialização em Eletrónica Médica), Todas as áreas científicas que apoiam e suportam a medicina têm evoluído muito ao longo dos anos. Uma dessas áreas é a Engenharia sendo indispensável para o eficaz e eficiente funcionamento do que hoje conhecemos como Medicina Moderna. A imagem médica, área muito explorada e dependente da Engenharia, tem evoluído muito e atualmente é possível diagnosticar, tratar e melhorar procedimentos, diminuir o erro humano, investigar com melhores práticas e até modelar próteses devido à evolução desta área. Isto tem acontecido quer através do aperfeiçoamento dos equipamentos de aquisição de imagens médicas, como também das técnicas de processamento de imagem usadas. Hoje em dia, a Tomografia Computadorizada (modalidade da imagem médica) é usada como exame de pré-diagnóstico para a correção do pectus excavatum, uma deformidade que ocorre na parede do tórax. Contudo, a Tomografia Computadorizada não é benéfica para os pacientes devido ao seu princípio físico de aquisição se basear em radiação, o que poderá originar a longo prazo problemas de saúde graves. Como a correção do pectus excavatum é cada vez mais uma cirurgia estética, onde o seu principal objetivo é evitar problemas psicológicos e de stress social nas crianças e jovens adolescentes portadores desta deformidade, tem-se questionado a real necessidade do uso da Tomografia Computadorizada. Tendo em consideração a realidade descrita foi objetivo deste trabalho avaliar a possibilidade de reconstruir um plano axial do tórax, contendo a grade costal, a partir de imagens por ultrassons e recorrendo a técnicas de processamento imagem. O intuito desta reconstrução foi eliminar a Tomografia Computadorizada do procedimento de modelação/dobragem automática da prótese cirúrgica para a correção do pectus excavatum. As técnicas e algoritmos de processamento de imagem usados e implementados, para obter um plano axial a partir de várias imagens de ultrassons, basearam-se no realce das imagens através de filtragem, no registo para obter as transformações entre imagens, na segmentação das estruturas ósseas e na reconstrução do plano final a partir dos dados do registo e da segmentação. Os resultados preliminares obtidos, principalmente de imagens de um phantom, demonstraram que é possível fazer reconstruções contendo informações das estruturas presentes no plano adquirido, como também da curvatura do tórax. Imagens obtidas com o phantom submerso em água demonstraram melhores resultados, onde as estruturas estão bem definidas e as dimensões coincidem quando comparadas com a Tomografia Computadorizada. Dados in vivo, mostraram que é possível reconstruir planos contendo a informação anatómica, no entanto, ainda não foi possível obter a curvatura real do tórax. Porém, o algoritmo de segmentação das estruturas ósseas demonstrou ser capaz de realçar a superfície do osso. Futuramente prevê-se a contínua otimização dos algoritmos, otimização dos parâmetros de aquisição da imagem e utilização de equipamentos externos de apoio à aquisição de imagens., All the scientific areas that support medicine have evolved enormously over the years. One such area is engineering, being indispensable for the effective and efficient functioning of what we know today as modern medicine. The medical imaging, a very explored and dependent area of the engineering, has greatly progressed and nowadays it is possible to diagnose, treat, improve procedures, reduce human error, investigate with best practices and model prosthesis due to developments in this area. This has occurred by improving the imaging equipment as well as the medical image processing techniques. Nowadays, the Computed Tomography (medical image modality) is used as pre-diagnosis examination for the correction of pectus excavatum, a deformity that occurs in the chest wall. However, Computed Tomography is not beneficial for patients because its physical principle of acquisition is based on radiation, which may lead to long-term serious health problems. As the correction of pectus excavatum is more a cosmetic surgery, where its main objective is to avoid psychological problems and social stress in children and young adolescents with this deformity, it has been questioned the real need for the use of Computed Tomography. Taking into account the described reality, the objective of this study was to evaluate the possibility to reconstruct an axial plane of the chest with the rib cage using ultrasound images and image processing techniques. The purpose of this reconstruction was to eliminate the Computed Tomography from the procedure of automatic modeling/bending the prosthesis for the surgical correction of pectus excavatum. The image processing techniques and algorithms used and implemented to obtain an axial plane, using several ultrasound images, were based in image enhancement using filtering techniques, in registration to obtain the transformations between images, the segmentation of bone structures and the reconstruction of the final plan from the data of registration and segmentation. The preliminary results, mostly from a phantom, showed that it is possible to make reconstructions containing the information of the structures present in the scanned plan, as well as the curvature of the chest. Acquired images with the phantom submerged in water exhibited better results, where the structures are well defined and the dimensions match when compared with Computed Tomography. In vivo data indicated that it is possible to reconstruct planes containing the anatomical information, however, still cannot get the actual curvature of the chest. The segmentation algorithm of bone structures has been shown to enhance the surface of the bone. Hereafter, it is anticipated the continuous optimization of algorithms, the optimization of image acquisition parameters and the use of external equipment to support the image acquisition., Fundação para a Ciência e a Tecnologia (FCT)
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- 2011
184. Dental implants' acquisition system for personalized dental prosthesis
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Moreira, António Herculano Jesus, Fonseca, Jaime C., Vilaça, João L., Pinho, A. C. Marques de, and Universidade do Minho
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Engenharia e Tecnologia::Outras Engenharias e Tecnologias ,Outras Engenharias e Tecnologias [Engenharia e Tecnologia] - Abstract
Tese de Doutoramento em Engenharia Electrónica Industrial e de Computadores., Over the past centuries, the incidence of tooth loss (i.e. edentulism) has increased worldwide, due to factors of malnutrition, bad hygiene habits, wear, injury or illness. This global health care problem pushed the development of new surgical techniques and technologies for implantation of artificial teeth. Currently, the common solution for edentulism is the replacement of natural teeth with an implant-supported fixed prosthesis. These are fixed dentures or, in some cases, semi-fixed dentures, that support and connect up to 8 implants together using a thin metal bar that follows the curvature of the patient’s jaw. For the prosthesis long-term success, accurately acquiring the implants’ position and angulation (i.e. with less than 150 μm of misfit) is required. The inability of current techniques to acquire implants with such accuracy usually promotes misfits, which prevents successful osseointegration of the implant, contact deformation and, ultimately, resulting in the prosthesis rejection by patient’s discomfort. This work aims to develop an acquisition system capable to get with precision and accuracy the implant’s pose directly at the patient's mouth, which will allow to reduce the misfit problems associated with implant-supported prosthesis, especially in edentulous patients. To chase this goal, one proposes to develop and assess three different acquisition approaches: an electromagnetic motion tracking-based; a robotic-based; and, an image-based. In this first approach, the feasibility of a spatial electromagnetic motion tracking system in combination with a non-metallic mechanical interface tool was assessed. To this end, a tool calibration procedure was proposed. In addition, three calibration algorithms (scattered linear interpolation, higher-order polynomial and Hardy multiquadric) were tested to compensate the electromagnetic tracker distortions. The results of this approach were tested in vitro and with finite element analysis to assess the stress distribution in a full-arch prosthesis. An average accuracy of 334 μm was achieved. In the second approach, the development of a miniaturized articulated measurement device is detailed. This comprises the mechanical design and strength simulation, hardware selection and corresponding calibration. The most suitable parameters for acquisition were defined resulting in a maximum variation of 0.059% for the ADC full scale and an absolute angle deviation of 0.0139º. Concerning mechanical stability and magnetic field interference, a final mechanical design with 4 mm of thickness and a Mu-metal full shielding with 150 μm of thickness was defined as essential to ensure stability and accuracy. Lastly, to assess the device viability, a virtual mandible with four implants was used as ground-truth in an in vitro experiment. An average accuracy of 214 μm was achieved. Regarding the third approach, it consisted in the development of an image-based methodology to determine the implants’ pose (position and orientation) within cone-beam computerized tomography (CBCT) volumetric data. A model-based implant simulation methodology with real CBCT machine parameters is presented as a way to improve the implant’s pose extraction. To this extent, four modules were developed specifically for this framework, namely the implant search and extraction module, the implant CBCT simulation module, the voxel-based rigid registration module and the final implants’ pose estimation module. Additionally, a set of 3 experiments were designed to assess the framework validity, in specific an in silico, an in vitro and an in vivo experiment. An average accuracy of 69 μm was achieved in the in vitro experiments. Even though the motion-tracking based (first) and robotic-based (second) approaches did not reached the accuracy demands for the target application, the image-based framework (third) presented in silico and in vitro misfits below the 150 μm recommended in the literature. The proposed implant’s pose estimation framework thus opens the way for a fully user independent, digital impression workflow., Ao longo dos últimos séculos, a incidência da perda de dentes (i.e., desdentados) tem aumentado em todo o mundo, devido a fatores de desnutrição, maus hábitos de higiene, desgaste, lesão ou doença. Este problema de saúde global impulsionou o desenvolvimento de novas técnicas cirúrgicas e tecnologias para implantação de dentes artificiais. Atualmente, a solução mais comum para a perda de dentes naturais é a sua substituição por uma prótese fixa implanto-suportada. As próteses fixas ou semifixas, suportam e ligam até 8 implantes em conjunto, utilizando no seu interior uma barra de metal que segue a curvatura da maxila do paciente. Para o sucesso da prótese a longo prazo, a aquisição com precisão da posição e ângulo dos implantes (i.e., com um desvio menor que 150 um) é essencial. A incapacidade das técnicas atuais para adquirir os implantes com tal precisão geralmente promove desajustes entre os implantes e os suportes das próteses, impedindo a osseointegração do implante, deformações mecânicas e, em última instância, resulta na rejeição da prótese por desconforto do paciente. Este trabalho tem como objetivo desenvolver um sistema de aquisição capaz de obter com precisão e exatidão a pose do implante diretamente na boca do paciente, o que permitirá reduzir os problemas associados com os desajustes das próteses implanto-suportada, especialmente em pacientes desdentados. Para perseguir este objetivo, propõem-se desenvolver e avaliar três abordagens de aquisição diferentes: uma baseada em sistemas motion tracking; um baseado num sistema mecânico articulado; e, um com base em imagem médica. Na primeira abordagem foi avaliada, a viabilidade de um sistema de motion tracking eletromagnético, em combinação com uma ferramenta de interface mecânica não metálica como ferramenta de aquisição. Para este fim, foi proposto um processo de calibração da ferramenta. Além disso, três algoritmos de foram testados para compensar as distorções do sistema. Os resultados desta abordagem foram testados in vitro e por análise de elementos finitos para avaliar as forças geradas na prótese. Foi alcançada uma precisão média de 334 um. Na segunda abordagem é detalhado o foi desenvolvido de um dispositivo miniaturizado e articulado de medição. É descrita a sua conceção mecânica e simulações associadas, seleção de hardware e calibração correspondente. Foram definidos os parâmetros mais adequados para aquisição resultando numa variação de 0,059% da escala do ADC e um desvio angular máximo de 0.0139º. Em relação à estabilidade mecânica e interferências magnéticas, o design mecânico final conta com 4 mm de espessura e com uma proteção metálica em mu-metal de 150 um de espessura, essencial para garantir a estabilidade e precisão requeridas. Este sistema foi validado numa mandíbula artificial com 4 implantes, alcançando-se uma precisão média de 214 um. Em relação à terceira abordagem, esta consistiu no desenvolvimento de uma metodologia baseada em imagem médica para determinar pose dos implantes (i.e., posição e orientação) a partir de imagens de tomografia computadorizada de feixe cónico (CBCT). A metodologia proposta baseia-se na simulação do modelo do implante com os parâmetros da máquina CBCT utilizada, apresentado desta forma um modelo aproximado ao existente nos dados volumétricos extraídos do CBCT, melhorando a extração da pose do implante. Para tal, quatro módulos foram desenvolvidos, o módulo de pesquisa de implante e de extração, o módulo de simulação CBCT do implante, o módulo de registo e o módulo de calculo da pose final. Além disso, 3 experiências foram concebidas para avaliar e validar esta abordagem, uma in silico, uma in vitro e numa experiência in vivo. Foi alcançada uma precisão média de 69 um na experiência in vitro. Apesar das abordagens com sistema de motion tracking (primeiro) e com o sistema articulado de medição (segunda) não atingirem as exigências de precisão para a aplicação, o sistema baseado em imagem médica (terceiro) apresentou in silico e in vitro precisões abaixo do 150um recomendados na literatura. É espectável que com o sistema de imagem médica seja criar um método de aquisição de implantes diretamente a partir da boca do paciente de for totalmente digital e independente do dentista.
185. SurgT challenge: Benchmark of soft-tissue trackers for robotic surgery.
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Cartucho J, Weld A, Tukra S, Xu H, Matsuzaki H, Ishikawa T, Kwon M, Jang YE, Kim KJ, Lee G, Bai B, Kahrs LA, Boecking L, Allmendinger S, Müller L, Zhang Y, Jin Y, Bano S, Vasconcelos F, Reiter W, Hajek J, Silva B, Lima E, Vilaça JL, Queirós S, and Giannarou S
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- Humans, Benchmarking, Algorithms, Endoscopy, Image Processing, Computer-Assisted methods, Robotic Surgical Procedures
- Abstract
This paper introduces the "SurgT: Surgical Tracking" challenge which was organized in conjunction with the 25th International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI 2022). There were two purposes for the creation of this challenge: (1) the establishment of the first standardized benchmark for the research community to assess soft-tissue trackers; and (2) to encourage the development of unsupervised deep learning methods, given the lack of annotated data in surgery. A dataset of 157 stereo endoscopic videos from 20 clinical cases, along with stereo camera calibration parameters, have been provided. Participants were assigned the task of developing algorithms to track the movement of soft tissues, represented by bounding boxes, in stereo endoscopic videos. At the end of the challenge, the developed methods were assessed on a previously hidden test subset. This assessment uses benchmarking metrics that were purposely developed for this challenge, to verify the efficacy of unsupervised deep learning algorithms in tracking soft-tissue. The metric used for ranking the methods was the Expected Average Overlap (EAO) score, which measures the average overlap between a tracker's and the ground truth bounding boxes. Coming first in the challenge was the deep learning submission by ICVS-2Ai with a superior EAO score of 0.617. This method employs ARFlow to estimate unsupervised dense optical flow from cropped images, using photometric and regularization losses. Second, Jmees with an EAO of 0.583, uses deep learning for surgical tool segmentation on top of a non-deep learning baseline method: CSRT. CSRT by itself scores a similar EAO of 0.563. The results from this challenge show that currently, non-deep learning methods are still competitive. The dataset and benchmarking tool created for this challenge have been made publicly available at https://surgt.grand-challenge.org/. This challenge is expected to contribute to the development of autonomous robotic surgery and other digital surgical technologies., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Crown Copyright © 2023. Published by Elsevier B.V. All rights reserved.)
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- 2024
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186. CholecTriplet2022: Show me a tool and tell me the triplet - An endoscopic vision challenge for surgical action triplet detection.
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Nwoye CI, Yu T, Sharma S, Murali A, Alapatt D, Vardazaryan A, Yuan K, Hajek J, Reiter W, Yamlahi A, Smidt FH, Zou X, Zheng G, Oliveira B, Torres HR, Kondo S, Kasai S, Holm F, Özsoy E, Gui S, Li H, Raviteja S, Sathish R, Poudel P, Bhattarai B, Wang Z, Rui G, Schellenberg M, Vilaça JL, Czempiel T, Wang Z, Sheet D, Thapa SK, Berniker M, Godau P, Morais P, Regmi S, Tran TN, Fonseca J, Nölke JH, Lima E, Vazquez E, Maier-Hein L, Navab N, Mascagni P, Seeliger B, Gonzalez C, Mutter D, and Padoy N
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- Humans, Endoscopy, Algorithms, Surgical Instruments, Artificial Intelligence, Surgery, Computer-Assisted methods
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Formalizing surgical activities as triplets of the used instruments, actions performed, and target anatomies is becoming a gold standard approach for surgical activity modeling. The benefit is that this formalization helps to obtain a more detailed understanding of tool-tissue interaction which can be used to develop better Artificial Intelligence assistance for image-guided surgery. Earlier efforts and the CholecTriplet challenge introduced in 2021 have put together techniques aimed at recognizing these triplets from surgical footage. Estimating also the spatial locations of the triplets would offer a more precise intraoperative context-aware decision support for computer-assisted intervention. This paper presents the CholecTriplet2022 challenge, which extends surgical action triplet modeling from recognition to detection. It includes weakly-supervised bounding box localization of every visible surgical instrument (or tool), as the key actors, and the modeling of each tool-activity in the form of ‹instrument, verb, target› triplet. The paper describes a baseline method and 10 new deep learning algorithms presented at the challenge to solve the task. It also provides thorough methodological comparisons of the methods, an in-depth analysis of the obtained results across multiple metrics, visual and procedural challenges; their significance, and useful insights for future research directions and applications in surgery., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2023 Elsevier B.V. All rights reserved.)
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- 2023
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187. Fetal brain tissue annotation and segmentation challenge results.
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Payette K, Li HB, de Dumast P, Licandro R, Ji H, Siddiquee MMR, Xu D, Myronenko A, Liu H, Pei Y, Wang L, Peng Y, Xie J, Zhang H, Dong G, Fu H, Wang G, Rieu Z, Kim D, Kim HG, Karimi D, Gholipour A, Torres HR, Oliveira B, Vilaça JL, Lin Y, Avisdris N, Ben-Zvi O, Bashat DB, Fidon L, Aertsen M, Vercauteren T, Sobotka D, Langs G, Alenyà M, Villanueva MI, Camara O, Fadida BS, Joskowicz L, Weibin L, Yi L, Xuesong L, Mazher M, Qayyum A, Puig D, Kebiri H, Zhang Z, Xu X, Wu D, Liao K, Wu Y, Chen J, Xu Y, Zhao L, Vasung L, Menze B, Cuadra MB, and Jakab A
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- Pregnancy, Female, Humans, Brain diagnostic imaging, Head, Fetus diagnostic imaging, Algorithms, Magnetic Resonance Imaging methods, Image Processing, Computer-Assisted methods, White Matter
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In-utero fetal MRI is emerging as an important tool in the diagnosis and analysis of the developing human brain. Automatic segmentation of the developing fetal brain is a vital step in the quantitative analysis of prenatal neurodevelopment both in the research and clinical context. However, manual segmentation of cerebral structures is time-consuming and prone to error and inter-observer variability. Therefore, we organized the Fetal Tissue Annotation (FeTA) Challenge in 2021 in order to encourage the development of automatic segmentation algorithms on an international level. The challenge utilized FeTA Dataset, an open dataset of fetal brain MRI reconstructions segmented into seven different tissues (external cerebrospinal fluid, gray matter, white matter, ventricles, cerebellum, brainstem, deep gray matter). 20 international teams participated in this challenge, submitting a total of 21 algorithms for evaluation. In this paper, we provide a detailed analysis of the results from both a technical and clinical perspective. All participants relied on deep learning methods, mainly U-Nets, with some variability present in the network architecture, optimization, and image pre- and post-processing. The majority of teams used existing medical imaging deep learning frameworks. The main differences between the submissions were the fine tuning done during training, and the specific pre- and post-processing steps performed. The challenge results showed that almost all submissions performed similarly. Four of the top five teams used ensemble learning methods. However, one team's algorithm performed significantly superior to the other submissions, and consisted of an asymmetrical U-Net network architecture. This paper provides a first of its kind benchmark for future automatic multi-tissue segmentation algorithms for the developing human brain in utero., Competing Interests: Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2023. Published by Elsevier B.V.)
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- 2023
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188. Smart scan of medical device displays to integrate with a mHealth application.
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Lobo P, Vilaça JL, Torres H, Oliveira B, and Simões A
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Background: The daily monitoring of the physiological parameters is essential for monitoring health condition and to prevent health problems. This is possible due to the democratization of numerous types of medical devices and promoted by the interconnection between these and smartphones. Nevertheless, medical devices that connect to smartphones are typically limited to manufacturers applications., Objectives: This paper proposes an intelligent scanning system to simplify the collection of data displayed on different medical devices screens, recognizing the values, and optionally integrating them, through open protocols, with centralized databases., Methods: To develop this system, a dataset comprising 1614 images of medical devices was created, obtained from manufacturer catalogs, photographs and other public datasets. Then, three object detector algorithms (yolov3, Single-Shot Detector [SSD] 320 × 320 and SSD 640 × 640) were trained to detect digits and acronyms/units of measurements presented by medical devices. These models were tested under 3 different conditions to detect digits and acronyms/units as a single object (single label), digits and acronyms/units as independent objects (two labels), and digits and acronyms/units individually (fifteen labels). Models trained for single and two labels were completed with a convolutional neural network (CNN) to identify the detected objects. To group the recognized digits, a condition-tree based strategy on density spatial clustering was used., Results: The most promising approach was the use of the SSD 640 × 640 for fifteen labels., Conclusion: Lastly, as future work, it is intended to convert this system to a mobile environment to accelerate and streamline the process of inserting data into mobile health (mhealth) applications., Competing Interests: Pedro Lobo reports financial support was provided by Fundação para a Ciência e Tecnologia, Northern Portugal Regional Operational Programme, Next Generation EU., (© 2023 Published by Elsevier Ltd.)
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- 2023
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189. CholecTriplet2021: A benchmark challenge for surgical action triplet recognition.
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Nwoye CI, Alapatt D, Yu T, Vardazaryan A, Xia F, Zhao Z, Xia T, Jia F, Yang Y, Wang H, Yu D, Zheng G, Duan X, Getty N, Sanchez-Matilla R, Robu M, Zhang L, Chen H, Wang J, Wang L, Zhang B, Gerats B, Raviteja S, Sathish R, Tao R, Kondo S, Pang W, Ren H, Abbing JR, Sarhan MH, Bodenstedt S, Bhasker N, Oliveira B, Torres HR, Ling L, Gaida F, Czempiel T, Vilaça JL, Morais P, Fonseca J, Egging RM, Wijma IN, Qian C, Bian G, Li Z, Balasubramanian V, Sheet D, Luengo I, Zhu Y, Ding S, Aschenbrenner JA, van der Kar NE, Xu M, Islam M, Seenivasan L, Jenke A, Stoyanov D, Mutter D, Mascagni P, Seeliger B, Gonzalez C, and Padoy N
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- Humans, Algorithms, Operating Rooms, Workflow, Deep Learning, Benchmarking, Laparoscopy
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Context-aware decision support in the operating room can foster surgical safety and efficiency by leveraging real-time feedback from surgical workflow analysis. Most existing works recognize surgical activities at a coarse-grained level, such as phases, steps or events, leaving out fine-grained interaction details about the surgical activity; yet those are needed for more helpful AI assistance in the operating room. Recognizing surgical actions as triplets of ‹instrument, verb, target› combination delivers more comprehensive details about the activities taking place in surgical videos. This paper presents CholecTriplet2021: an endoscopic vision challenge organized at MICCAI 2021 for the recognition of surgical action triplets in laparoscopic videos. The challenge granted private access to the large-scale CholecT50 dataset, which is annotated with action triplet information. In this paper, we present the challenge setup and the assessment of the state-of-the-art deep learning methods proposed by the participants during the challenge. A total of 4 baseline methods from the challenge organizers and 19 new deep learning algorithms from the competing teams are presented to recognize surgical action triplets directly from surgical videos, achieving mean average precision (mAP) ranging from 4.2% to 38.1%. This study also analyzes the significance of the results obtained by the presented approaches, performs a thorough methodological comparison between them, in-depth result analysis, and proposes a novel ensemble method for enhanced recognition. Our analysis shows that surgical workflow analysis is not yet solved, and also highlights interesting directions for future research on fine-grained surgical activity recognition which is of utmost importance for the development of AI in surgery., Competing Interests: Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2023 Elsevier B.V. All rights reserved.)
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- 2023
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190. Remote Monitoring System of Dynamic Compression Bracing to Correct Pectus Carinatum.
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Real A, Morais P, Oliveira B, Torres HR, and Vilaça JL
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- Humans, Silicon, Sternum, Braces, Pressure, Treatment Outcome, Pectus Carinatum therapy
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Pectus carinatum (PC) is a chest deformity caused by disproportionate growth of the costal cartilages compared with the bony thoracic skeleton, pulling the sternum forwards and leading to its protrusion. Currently, the most common non-invasive treatment is external compressive bracing, by means of an orthosis. While this treatment is widely adopted, the correct magnitude of applied compressive forces remains unknown, leading to suboptimal results. Moreover, the current orthoses are not suitable to monitor the treatment. The purpose of this study is to design a force measuring system that could be directly embedded into an existing PC orthosis without relevant modifications in its construction. For that, inspired by the currently commercially available products where a solid silicone pad is used, three concepts for silicone-based sensors, two capacitive and one magnetic type, are presented and compared. Additionally, a concept of a full pipeline to capture and store the sensor data was researched. Compression tests were conducted on a calibration machine, with forces ranging from 0 N to 300 N. Local evaluation of sensors' response in different regions was also performed. The three sensors were tested and then compared with the results of a solid silicon pad. One of the capacitive sensors presented an identical response to the solid silicon while the other two either presented poor repeatability or were too stiff, raising concerns for patient comfort. Overall, the proposed system demonstrated its potential to measure and monitor orthosis's applied forces, corroborating its potential for clinical practice.
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- 2023
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191. Augmented Reality-Assisted Ultrasound Breast Biopsy.
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Costa N, Ferreira L, de Araújo ARVF, Oliveira B, Torres HR, Morais P, Alves V, and Vilaça JL
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- Female, Humans, User-Computer Interface, Ultrasonography, Mammary, Ultrasonography, Biopsy, Augmented Reality
- Abstract
Breast cancer is the most prevalent cancer in the world and the fifth-leading cause of cancer-related death. Treatment is effective in the early stages. Thus, a need to screen considerable portions of the population is crucial. When the screening procedure uncovers a suspect lesion, a biopsy is performed to assess its potential for malignancy. This procedure is usually performed using real-time Ultrasound (US) imaging. This work proposes a visualization system for US breast biopsy. It consists of an application running on AR glasses that interact with a computer application. The AR glasses track the position of QR codes mounted on an US probe and a biopsy needle. US images are shown in the user's field of view with enhanced lesion visualization and needle trajectory. To validate the system, latency of the transmission of US images was evaluated. Usability assessment compared our proposed prototype with a traditional approach with different users. It showed that needle alignment was more precise, with 92.67 ± 2.32° in our prototype versus 89.99 ± 37.49° in a traditional system. The users also reached the lesion more accurately. Overall, the proposed solution presents promising results, and the use of AR glasses as a tracking and visualization device exhibited good performance.
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- 2023
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192. A multi-task convolutional neural network for classification and segmentation of chronic venous disorders.
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Oliveira B, Torres HR, Morais P, Veloso F, Baptista AL, Fonseca JC, and Vilaça JL
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- Aged, Humans, Europe, Image Processing, Computer-Assisted methods, North America, Chronic Disease, Cardiovascular Diseases, Neural Networks, Computer, Veins
- Abstract
Chronic Venous Disorders (CVD) of the lower limbs are one of the most prevalent medical conditions, affecting 35% of adults in Europe and North America. Due to the exponential growth of the aging population and the worsening of CVD with age, it is expected that the healthcare costs and the resources needed for the treatment of CVD will increase in the coming years. The early diagnosis of CVD is fundamental in treatment planning, while the monitoring of its treatment is fundamental to assess a patient's condition and quantify the evolution of CVD. However, correct diagnosis relies on a qualitative approach through visual recognition of the various venous disorders, being time-consuming and highly dependent on the physician's expertise. In this paper, we propose a novel automatic strategy for the joint segmentation and classification of CVDs. The strategy relies on a multi-task deep learning network, denominated VENet, that simultaneously solves segmentation and classification tasks, exploiting the information of both tasks to increase learning efficiency, ultimately improving their performance. The proposed method was compared against state-of-the-art strategies in a dataset of 1376 CVD images. Experiments showed that the VENet achieved a classification performance of 96.4%, 96.4%, and 97.2% for accuracy, precision, and recall, respectively, and a segmentation performance of 75.4%, 76.7.0%, 76.7% for the Dice coefficient, precision, and recall, respectively. The joint formulation increased the robustness of both tasks when compared to the conventional classification or segmentation strategies, proving its added value, mainly for the segmentation of small lesions., (© 2023. The Author(s).)
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- 2023
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193. Assessment of LAA Strain and Thrombus Mobility and Its Impact on Thrombus Resolution-Added-Value of a Novel Echocardiographic Thrombus Tracking Method.
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Morais P, Nelles D, Vij V, Al-Kassou B, Weber M, Nickenig G, Schrickel JW, Vilaça JL, and Sedaghat A
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- Humans, Middle Aged, Aged, Aged, 80 and over, Echocardiography, Transesophageal methods, Echocardiography, Anticoagulants, Atrial Appendage diagnostic imaging, Thrombosis diagnostic imaging, Atrial Fibrillation complications, Atrial Fibrillation diagnostic imaging, Heart Diseases
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Purpose: The mobility of left atrial appendage (LAA) thrombi and changes hereof under anticoagulation may serve as a marker of both risk of embolism and efficacy of treatment. In this study, we sought to evaluate thrombus mobility and hypothesized that LAA dynamics and thrombus mobility could serve as a baseline marker of thrombus dissolvability., Methods: Patients with two-dimensional transesophageal echocardiographic images of the LAA, and with evidence of LAA thrombus were included in this study. Using a speckle tracking algorithm, functional information from the LAA and thrombi of different patients was computed. While the LAA motion was quantified through the longitudinal strain, thrombus mobility was evaluated using a novel method by directly tracking the thrombus, isolated from the global cardiac motion. Baseline characteristics and echocardiographic parameters were compared between responders (thrombus resolution) and non-responders (thrombus persistence) to anticoagulation., Results: We included 35 patients with atrial fibrillation with evidence of LAA thrombi. Patients had a mean age of 72.9 ± 14.1 years, exhibited a high risk for thromboembolism (CHA2DS2-VASc-Score 4.1 ± 1.5) and had moderately reduced LVEF (41.7 ± 14.4%) and signs of diastolic dysfunction (E/E' = 19.7 ± 8.5). While anticoagulation was initiated in all patients, resolution was achieved in 51.4% of patients. Significantly higher LAA peak strain (- 3.0 ± 1.3 vs. - 1.6 ± 1.5%, p < 0.01) and thrombus mobility (0.33 ± 0.13 mm vs. 0.18 ± 0.08 mm, p < 0.01) were observed in patients in whom thrombi resolved (i.e. responders against non-responders). Receiver operating characteristic (ROC) analysis revealed a high discriminatory ability for thrombus mobility with regards to thrombus resolution (AUC 0.89)., Conclusion: Isolated tracking of thrombus mobility from echocardiographic images is feasible. In patients with LAA thrombus, higher thrombus mobility appeared to be associated with thrombus resolution. Future studies should be conducted to evaluate the role of the described technique to predict LAA thrombus resolution or persistence., (© 2022. The Author(s).)
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- 2022
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194. Rapid artificial intelligence solutions in a pandemic-The COVID-19-20 Lung CT Lesion Segmentation Challenge.
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Roth HR, Xu Z, Tor-Díez C, Sanchez Jacob R, Zember J, Molto J, Li W, Xu S, Turkbey B, Turkbey E, Yang D, Harouni A, Rieke N, Hu S, Isensee F, Tang C, Yu Q, Sölter J, Zheng T, Liauchuk V, Zhou Z, Moltz JH, Oliveira B, Xia Y, Maier-Hein KH, Li Q, Husch A, Zhang L, Kovalev V, Kang L, Hering A, Vilaça JL, Flores M, Xu D, Wood B, and Linguraru MG
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- Humans, Artificial Intelligence, Tomography, X-Ray Computed methods, Lung diagnostic imaging, Pandemics, COVID-19 diagnostic imaging
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Artificial intelligence (AI) methods for the automatic detection and quantification of COVID-19 lesions in chest computed tomography (CT) might play an important role in the monitoring and management of the disease. We organized an international challenge and competition for the development and comparison of AI algorithms for this task, which we supported with public data and state-of-the-art benchmark methods. Board Certified Radiologists annotated 295 public images from two sources (A and B) for algorithms training (n=199, source A), validation (n=50, source A) and testing (n=23, source A; n=23, source B). There were 1,096 registered teams of which 225 and 98 completed the validation and testing phases, respectively. The challenge showed that AI models could be rapidly designed by diverse teams with the potential to measure disease or facilitate timely and patient-specific interventions. This paper provides an overview and the major outcomes of the COVID-19 Lung CT Lesion Segmentation Challenge - 2020., (Copyright © 2022 Elsevier B.V. All rights reserved.)
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- 2022
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195. Characterization of the Workspace and Limits of Operation of Laser Treatments for Vascular Lesions of the Lower Limbs.
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Oliveira B, Morais P, Torres HR, Baptista AL, Fonseca JC, and Vilaça JL
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- Lower Extremity surgery, Treatment Outcome, Robotics methods
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The increase of the aging population brings numerous challenges to health and aesthetic segments. Here, the use of laser therapy for dermatology is expected to increase since it allows for non-invasive and infection-free treatments. However, existing laser devices require doctors' manually handling and visually inspecting the skin. As such, the treatment outcome is dependent on the user's expertise, which frequently results in ineffective treatments and side effects. This study aims to determine the workspace and limits of operation of laser treatments for vascular lesions of the lower limbs. The results of this study can be used to develop a robotic-guided technology to help address the aforementioned problems. Specifically, workspace and limits of operation were studied in eight vascular laser treatments. For it, an electromagnetic tracking system was used to collect the real-time positioning of the laser during the treatments. The computed average workspace length, height, and width were 0.84 ± 0.15, 0.41 ± 0.06, and 0.78 ± 0.16 m, respectively. This corresponds to an average volume of treatment of 0.277 ± 0.093 m
3 . The average treatment time was 23.2 ± 10.2 min, with an average laser orientation of 40.6 ± 5.6 degrees. Additionally, the average velocities of 0.124 ± 0.103 m/s and 31.5 + 25.4 deg/s were measured. This knowledge characterizes the vascular laser treatment workspace and limits of operation, which may ease the understanding for future robotic system development.- Published
- 2022
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196. Anthropometric Landmarking for Diagnosis of Cranial Deformities: Validation of an Automatic Approach and Comparison with Intra- and Interobserver Variability.
- Author
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Torres HR, Morais P, Fritze A, Burkhardt W, Kaufmann M, Oliveira B, Veloso F, Hahn G, Rüdiger M, Fonseca JC, and Vilaça JL
- Subjects
- Cephalometry methods, Humans, Infant, Observer Variation, Reproducibility of Results, Imaging, Three-Dimensional methods, Skull diagnostic imaging
- Abstract
Shape analysis of infant's heads is crucial to diagnose cranial deformities and evaluate head growth. Currently available 3D imaging systems can be used to create 3D head models, promoting the clinical practice for head evaluation. However, manual analysis of 3D shapes is difficult and operator-dependent, causing inaccuracies in the analysis. This study aims to validate an automatic landmark detection method for head shape analysis. The detection results were compared with manual analysis in three levels: (1) distance error of landmarks; (2) accuracy of standard cranial measurements, namely cephalic ratio (CR), cranial vault asymmetry index (CVAI), and overall symmetry ratio (OSR); and (3) accuracy of the final diagnosis of cranial deformities. For each level, the intra- and interobserver variability was also studied by comparing manual landmark settings. High landmark detection accuracy was achieved by the method in 166 head models. A very strong agreement with manual analysis for the cranial measurements was also obtained, with intraclass correlation coefficients of 0.997, 0.961, and 0.771 for the CR, CVAI, and OSR. 91% agreement with manual analysis was achieved in the diagnosis of cranial deformities. Considering its high accuracy and reliability in different evaluation levels, the method showed to be feasible for use in clinical practice for head shape analysis., (© 2022. The Author(s) under exclusive licence to Biomedical Engineering Society.)
- Published
- 2022
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197. Realistic 3D infant head surfaces augmentation to improve AI-based diagnosis of cranial deformities.
- Author
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Torres HR, Oliveira B, Morais P, Fritze A, Rüdiger M, Fonseca JC, and Vilaça JL
- Subjects
- Humans, Infant, Infant, Newborn, Artificial Intelligence, Models, Statistical
- Abstract
Evaluation of the head shape of newborns is needed to detect cranial deformities, disturbances in head growth, and consequently, to predict short- and long-term neurodevelopment. Currently, there is a lack of automatic tools to provide a detailed evaluation of the head shape. Artificial intelligence (AI) methods, namely deep learning (DL), can be explored to develop fast and automatic approaches for shape evaluation. However, due to the clinical variability of patients' head anatomy, generalization of AI networks to the clinical needs is paramount and extremely challenging. In this work, a new framework is proposed to augment the 3D data used for training DL networks for shape evaluation. The proposed augmentation strategy deforms head surfaces towards different deformities. For that, a point-based 3D morphable model (p3DMM) is developed to generate a statistical model representative of head shapes of different cranial deformities. Afterward, a constrained transformation approach (3DHT) is applied to warp a head surface towards a target deformity by estimating a dense motion field from a sparse one resulted from the p3DMM. Qualitative evaluation showed that the proposed method generates realistic head shapes indistinguishable from the real ones. Moreover, quantitative experiments demonstrated that DL networks training with the proposed augmented surfaces improves their performance in terms of head shape analysis. Overall, the introduced augmentation allows to effectively transform a given head surface towards different deformity shapes, potentiating the development of DL approaches for head shape analysis., (Copyright © 2022 Elsevier Inc. All rights reserved.)
- Published
- 2022
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198. Feasibility and Accuracy of Automated Three-Dimensional Echocardiographic Analysis of Left Atrial Appendage for Transcatheter Closure.
- Author
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Morais P, Fan Y, Queirós S, D'hooge J, Lee AP, and Vilaça JL
- Subjects
- Echocardiography, Transesophageal, Feasibility Studies, Humans, Reproducibility of Results, Retrospective Studies, Atrial Appendage diagnostic imaging, Atrial Appendage surgery, Atrial Fibrillation, Echocardiography, Three-Dimensional
- Abstract
Background: Procedural success of transcatheter left atrial appendage closure (LAAC) is dependent on correct device selection. Three-dimensional (3D) transesophageal echocardiography (TEE) is more accurate than the two-dimensional modality for evaluation of the complex anatomy of the left atrial appendage (LAA). However, 3D transesophageal echocardiographic analysis of the LAA is challenging and highly expertise dependent. The aim of this study was to evaluate the feasibility and accuracy of a novel software tool for automated 3D analysis of the LAA using 3D transesophageal echocardiographic data., Methods: Intraprocedural 3D transesophageal echocardiographic data from 158 patients who underwent LAAC were retrospectively analyzed using a novel automated LAA analysis software tool. On the basis of the 3D transesophageal echocardiographic data, the software semiautomatically segmented the 3D LAA structure, determined the device landing zone, and generated measurements of the landing zone dimensions and LAA length, allowing manual editing if necessary. The accuracy of LAA preimplantation anatomic measurement reproducibility and time for analysis of the automated software were compared against expert manual 3D analysis. The software feasibility to predict the optimal device size was directly compared with implanted models., Results: Automated 3D analysis of the LAA on 3D TEE was feasible in all patients. There was excellent agreement between automated and manual measurements of landing zone maximal diameter (bias, -0.32; limits of agreement, -3.56 to 2.92), area-derived mean diameter (bias, -0.24; limits of agreement, -3.12 to 2.64), and LAA depth (bias, 0.02; limits of agreement, -3.14 to 3.18). Automated 3D analysis, with manual editing if necessary, accurately identified the implanted device size in 90.5% of patients, outperforming two-dimensional TEE (68.9%; P < .01). The automated software showed results competitive against the manual analysis of 3D TEE, with higher intra- and interobserver reproducibility, and allowed quicker analysis (101.9 ± 9.3 vs 183.5 ± 42.7 sec, P < .001) compared with manual analysis., Conclusions: Automated LAA analysis on the basis of 3D TEE is feasible and allows accurate, reproducible, and rapid device sizing decision for LAAC., (Copyright © 2021 American Society of Echocardiography. Published by Elsevier Inc. All rights reserved.)
- Published
- 2022
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199. Rapid Artificial Intelligence Solutions in a Pandemic - The COVID-19-20 Lung CT Lesion Segmentation Challenge.
- Author
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Roth HR, Xu Z, Diez CT, Jacob RS, Zember J, Molto J, Li W, Xu S, Turkbey B, Turkbey E, Yang D, Harouni A, Rieke N, Hu S, Isensee F, Tang C, Yu Q, Sölter J, Zheng T, Liauchuk V, Zhou Z, Moltz JH, Oliveira B, Xia Y, Maier-Hein KH, Li Q, Husch A, Zhang L, Kovalev V, Kang L, Hering A, Vilaça JL, Flores M, Xu D, Wood B, and Linguraru MG
- Abstract
Artificial intelligence (AI) methods for the automatic detection and quantification of COVID-19 lesions in chest computed tomography (CT) might play an important role in the monitoring and management of the disease. We organized an international challenge and competition for the development and comparison of AI algorithms for this task, which we supported with public data and state-of-the-art benchmark methods. Board Certified Radiologists annotated 295 public images from two sources (A and B) for algorithms training (n=199, source A), validation (n=50, source A) and testing (n=23, source A; n=23, source B). There were 1,096 registered teams of which 225 and 98 completed the validation and testing phases, respectively. The challenge showed that AI models could be rapidly designed by diverse teams with the potential to measure disease or facilitate timely and patient-specific interventions. This paper provides an overview and the major outcomes of the COVID-19 Lung CT Lesion Segmentation Challenge - 2020.
- Published
- 2021
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200. Assessment of aortic valve tract dynamics using automatic tracking of 3D transesophageal echocardiographic images.
- Author
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Queirós S, Morais P, Fehske W, Papachristidis A, Voigt JU, Fonseca JC, D'hooge J, and Vilaça JL
- Subjects
- Aged, Aged, 80 and over, Algorithms, Aortic Valve physiopathology, Aortic Valve surgery, Aortic Valve Stenosis physiopathology, Aortic Valve Stenosis surgery, Automation, Female, Heart Valve Prosthesis, Humans, Male, Observer Variation, Predictive Value of Tests, Prosthesis Design, Reproducibility of Results, Retrospective Studies, Software Design, Time Factors, Transcatheter Aortic Valve Replacement instrumentation, Aortic Valve diagnostic imaging, Aortic Valve Stenosis diagnostic imaging, Echocardiography, Three-Dimensional methods, Echocardiography, Transesophageal methods, Hemodynamics, Image Interpretation, Computer-Assisted methods
- Abstract
The assessment of aortic valve (AV) morphology is paramount for planning transcatheter AV implantation (TAVI). Nowadays, pre-TAVI sizing is routinely performed at one cardiac phase only, usually at mid-systole. Nonetheless, the AV is a dynamic structure that undergoes changes in size and shape throughout the cardiac cycle, which may be relevant for prosthesis selection. Thus, the aim of this study was to present and evaluate a novel software tool enabling the automatic sizing of the AV dynamically in three-dimensional (3D) transesophageal echocardiography (TEE) images. Forty-two patients who underwent preoperative 3D-TEE images were retrospectively analyzed using the software. Dynamic measurements were automatically extracted at four levels, including the aortic annulus. These measures were used to assess the software's ability to accurately and reproducibly quantify the conformational changes of the aortic root and were validated against automated sizing measurements independently extracted at distinct time points. The software extracted physiological dynamic measurements in less than 2 min, that were shown to be accurate (error 2.2 ± 26.3 mm
2 and 0.0 ± 2.53 mm for annular area and perimeter, respectively) and highly reproducible (0.85 ± 6.18 and 0.65 ± 7.90 mm2 of intra- and interobserver variability, respectively, in annular area). Using the maximum or minimum measured values rather than mid-systolic ones for device sizing resulted in a potential change of recommended size in 7% and 60% of the cases, respectively. The presented software tool allows a fast, automatic and reproducible dynamic assessment of the AV morphology from 3D-TEE images, with the extracted measures influencing the device selection depending on the cardiac moment used to perform its sizing. This novel tool may thus ease and potentially increase the observer's confidence during prosthesis' size selection at the preoperative TAVI planning.- Published
- 2019
- Full Text
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