151. Identification of human liver diacetyl reductases by nano-liquid chromatography/Fourier transform ion cyclotron resonance mass spectrometry
- Author
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Yorihisa Tanaka, Takemichi Nakamura, Toshihiko Ikeda, Ikuya Sato, Chisaki Iwai, and Toshiyuki Kosaka
- Subjects
Spectrometry, Mass, Electrospray Ionization ,Carbonyl Reductase ,Protein mass spectrometry ,Molecular Sequence Data ,Biophysics ,Peptide ,Biochemistry ,Peptide Mapping ,Fourier transform ion cyclotron resonance ,Mass Spectrometry ,Fragmentation (mass spectrometry) ,Peptide mass fingerprinting ,Humans ,Amino Acid Sequence ,Molecular Biology ,Chromatography, High Pressure Liquid ,Aldehyde Reductase ,chemistry.chemical_classification ,Chromatography ,Fourier Analysis ,Chemistry ,fungi ,Cell Biology ,Chromatography, Ion Exchange ,Acetoin Dehydrogenase ,Databases as Topic ,Liver ,Mass spectrum - Abstract
Several forms of diacetyl-reducing enzyme were found to exist in the human liver cytosol. Three (DAR-2, DAR-5, and DAR-7) of them were purified as a single band on SDS–PAGE by a combination of a few kinds of column chromatographies. The in-gel tryptic digests of the purified enzymes were analyzed by nano-liquid chromatography (LC)/Fourier transform ion cyclotron resonance mass spectrometry (FT ICR MS), which provided peptide masses at a ppm-level accuracy. The enzymes, DAR-2, DAR-5, and DAR-7, were identified as alcohol dehydrogenase β subunit (ADH2), carbonyl reductase (CBR1), and aldehyde reductase (AKR1A1), respectively, by peptide mass fingerprinting. In addition, an alternating-scan acquisition of nano-LC/FT ICR mass spectra, i.e., switching of normal acquisition conditions and in-source fragmentation conditions scan by scan, provided sets of parent and fragment ion masses of many of the tryptic peptides in a single LC/MS run. The peptide sequence-tag information at the ppm-level accuracy was used to further confirm the protein identities. It was demonstrated that nano-LC/FT ICR MS can be used for rigorous protein identification at a subpicomole level as an alternative technique to nano-LC/MS/MS.
- Published
- 2001