363 results on '"Thamwattana, Ngamta"'
Search Results
152. Modeling Interactions Between C $$_{60}$$ Antiviral Compounds and HIV Protease.
- Author
-
Al Garalleh, Hakim, Thamwattana, Ngamta, Cox, Barry, and Hill, James
- Subjects
FULLERENES ,HIV ,MICROCLUSTERS ,FULLERIDES ,VIRUS inhibitors ,THERAPEUTICS - Abstract
Fullerenes have generated a great deal of interest in recent years, due to their properties and potential applications in many fields, including medicine. In this paper, we study an antiviral fullerene compound which may be used to treat the human immunodeficiency virus (HIV). We formulate a mathematical model which can describe the interaction energy between the C $$_{60}$$ antiviral compounds and the HIV. In particular, this paper predicts the energy and force arising from the interaction between HIV active region and the antiviral molecule which is attached to the external surface of a fullerene C $$_{60}$$ . These interactions are calculated based on the structure of the antiviral molecules. Our results show that the binding of fullerene C $$_{60}$$ to the antiviral molecules increases the efficiency of the compound to prohibit the activity of HIV. [ABSTRACT FROM AUTHOR]
- Published
- 2015
- Full Text
- View/download PDF
153. Mechanics of atoms and fullerenes in single-walled carbon nanotubes. II. Oscillatory behaviour
- Author
-
Cox, Barry J, primary, Thamwattana, Ngamta, additional, and Hill, James M, additional
- Published
- 2006
- Full Text
- View/download PDF
154. Mechanics of atoms and fullerenes in single-walled carbon nanotubes. I. Acceptance and suction energies
- Author
-
Cox, Barry J, primary, Thamwattana, Ngamta, additional, and Hill, James M, additional
- Published
- 2006
- Full Text
- View/download PDF
155. Electric field-induced force between two identical uncharged spheres
- Author
-
Cox, Barry J., primary, Thamwattana, Ngamta, additional, and Hill, James M., additional
- Published
- 2006
- Full Text
- View/download PDF
156. Modelling the Induced Force of Attraction in Electrorheological Nanofluids
- Author
-
Cox, Barry, primary, Thamwattana, Ngamta, additional, and Hill, James, additional
- Published
- 2006
- Full Text
- View/download PDF
157. Mathematical Modelling for a C/sub 60/ Carbon Nanotube Oscillator
- Author
-
Cox, Barry, primary, Thamwattana, Ngamta, additional, and Hill, James, additional
- Published
- 2006
- Full Text
- View/download PDF
158. Some analytical solutions for problems involving highly frictional granular materials
- Author
-
Thamwattana, Ngamta, primary
- Published
- 2005
- Full Text
- View/download PDF
159. Stress distributions in highly frictional granular heaps
- Author
-
Cox, Grant M., primary, Thamwattana, Ngamta, additional, and Hill, James M., additional
- Published
- 2004
- Full Text
- View/download PDF
160. Mathematical modelling for nanotube bundle oscillators.
- Author
-
Thamwattana, Ngamta, Cox, Barry J., and Hill, James M.
- Subjects
- *
CARBON nanotubes , *MOLECULAR dynamics , *OSCILLATIONS , *MATHEMATICAL models , *NITRIDES - Abstract
This paper investigates the mechanics of a gigahertz oscillator comprising a nanotube oscillating within the centre of a uniform concentric ring or bundle of nanotubes. The study is also extended to the oscillation of a fullerene inside a nanotube bundle. In particular, certain fullerene-nanotube bundle oscillators are studied, namely C60-carbon nanotube bundle, C60-boron nitride nanotube bundle, B36N36-carbon nanotube bundle and B36N36-boron nitride nanotube bundle. Using the Lennard-Jones potential and the continuum approach, we obtain a relation between the bundle radius and the radii of the nanotubes forming the bundle, as well as the optimum bundle size which gives rise to the maximum oscillatory frequency for both the fullerene and the nanotube bundle oscillators. While previous studies in this area have been undertaken through molecular dynamics simulations, this paper emphasizes the use of applied mathematical modelling techniques which provides considerable insight into the underlying mechanisms. The paper presents a synopsis of the major results derived in detail by the present authors in [1, 2]. [ABSTRACT FROM AUTHOR]
- Published
- 2009
- Full Text
- View/download PDF
161. Mechanics of nanoscale orbiting systems.
- Author
-
Yue Chan, Thamwattana, Ngamta, Cox, Grant M., and Hill, James M.
- Subjects
- *
NANOELECTRONICS , *ORBIT method , *CARBON nanotubes , *FULLERENES , *ATOMS - Abstract
At the nanoscale a number of very high frequency oscillating systems involving relative motion with respect to a carbon nanotube have been identified. In this paper, we study the two-body systems of an atom and a fullerene C60 orbiting around a single infinitely long carbon nanotube and a fullerene C60 orbiting around a fullerene C1500. The van der Waals interaction forces are modeled using the Lennard–Jones potential together with the continuum approach for which carbon atoms are assumed to be uniformly distributed over the surfaces of both the fullerenes and the carbon nanotube. Some analytical and perturbation solutions are obtained for the regime where the attractive term of the potential energy dominates. Certain circular orbiting radii of these nanoscale systems are estimated using a stability argument and the corresponding circular orbiting frequencies can then be calculated by investigating the minimum energy configuration of their effective potential energies. We find that the circular orbiting frequencies of the various proposed nano-systems are in the gigahertz range. Finally, the classification of their orbiting paths is determined numerically. [ABSTRACT FROM AUTHOR]
- Published
- 2009
- Full Text
- View/download PDF
162. Restricted Three Body Problems at the Nanoscale.
- Author
-
Yue Chan, Thamwattana, Ngamta, and Hill, James M.
- Subjects
- *
FULLERENES , *VAN der Waals forces , *QUASIMOLECULES , *POLARIZATION (Electricity) , *PHYSICS - Abstract
In this paper, we investigate some of the classical restricted three body problems at the nanoscale, such as the circular planar restricted problem for three C60 fullerenes, and a carbon atom and two C60 fullerenes. We model the van der Waals forces between the fullerenes by the Lennard–Jones potential. In particular, the pairwise potential energies between the carbon atoms on the fullerenes are approximated by the continuous approach, so that the total molecular energy between two fullerenes can be determined analytically. Since we assume that such interactions between the molecules occur at sufficiently large distance, the classical three body problems analysis is legitimate to determine the collective angular velocity of the two and three C60 fullerenes at the nanoscale. We find that the maximum collective angular velocity of the two and three fullerenes systems reach the terahertz range and we also determine the stationary points and the points which have maximum velocity for the carbon atom, for the carbon atom and the two fullerenes system. [ABSTRACT FROM AUTHOR]
- Published
- 2009
- Full Text
- View/download PDF
163. Energy density functions for protein structures.
- Author
-
THAMWATTANA, NGAMTA, MCCOY, JAMES A., and HILL, JAMES M.
- Subjects
- *
CALCULUS , *PROTEINS , *MOLECULAR structure , *LAGRANGE equations , *LINEAR systems - Abstract
In this paper, we adopt the calculus of variations to study the structure of protein with an energy functional dependent on the curvature, torsion and their derivatives with respect to the arc length of the protein backbone. Minimising this energy among smooth normal variations yields two Euler–Lagrange equations, which can be reduced to a single equation. This equation is identically satisfied for the special case when the free-energy density satisfies a certain linear condition on the partial derivatives. In the case when the energy depends only on the curvature and torsion, it can be shown that this condition is satisfied if the free-energy density is a homogeneous function of degree one. Another simple special solution for this case is shown to coincide with an energy density linear in curvature, which has been examined in detail by previous authors. The Euler–Lagrange equations are illustrated with reference to certain simple special cases of the energy density function, and a family of conical helices is examined in some detail. [ABSTRACT FROM PUBLISHER]
- Published
- 2008
- Full Text
- View/download PDF
164. Mechanics of spheroidal fullerenes and carbon nanotubes for drug and gene delivery.
- Author
-
COX, BARRY J., THAMWATTANA, NGAMTA, and HILL, JAMES M.
- Subjects
- *
MECHANICS (Physics) , *NANOCOMPOSITE materials , *NANOSTRUCTURES , *CARBON nanotubes , *INTERMOLECULAR forces - Abstract
There is considerable interest in the mechanics of carbon nanostructures, such as carbon nanotubes and fullerenes, and the manner of their interactions at the intermolecular level. Medical applications include the use of carbon nanotubes for targeted drug and gene delivery, for which issues relating to the acceptance and containment of drugs or genes are not properly understood. A spheroid is an ellipsoid with two equal axes and the general spheroidal shape includes a wide variety of possible molecular configurations such as spheres, capped cylindrical tubes and ellipsoids of revolution, and therefore the determination of the interaction forces for this general shape may have many applications. Phenomena such as the suction of fullerenes into carbon nanotubes due to the van der Waals interatomic interactions and ultra-low friction of a molecule moving inside a carbon nanotube give rise to the possibility of constructing nanoscaled oscillators with frequencies in the gigahertz range. This paper models the mechanics of such a system by employing a six-twelve Lennard–Jones potential taken over two surfaces assumed to be composed of mean distributions of atoms over the two idealized surfaces of an open-ended semi-infinite circular cylinder and a spheroid. Following the methodology of previous work with spherical surfaces, the acceptance energy and suction energy for spheroidal molecules are given and the special case of spherical molecules is also reproduced to validate the method. The results for elliptical molecules are novel and cannot be validated experimentally at this stage, but the results for the special case of spherical molecules are given and shown to be in good agreement with published molecular dynamical simulations. Finally, a general numerical-analytical procedure is proposed to calculate the Lennard–Jones potential for any axially symmetric surface, and the prior results obtained for the spheroid are used to validate the procedure. [ABSTRACT FROM PUBLISHER]
- Published
- 2007
- Full Text
- View/download PDF
165. Stress distributions within curved highly frictional granular stockpiles.
- Author
-
THAMWATTANA, NGAMTA and HILL, JAMES M.
- Subjects
- *
STRAINS & stresses (Mechanics) , *DISTRIBUTION (Probability theory) , *FRICTION , *MECHANICS (Physics) , *MATHEMATICS - Abstract
The problem of the determination of the horizontal and vertical force distributions at the base of a stockpile is a famous outstanding problem in granular theory, and has been exhaustively examined. In all past studies, the shape of the stockpile is assumed to be either a two‐dimensional wedge or a three‐dimensional cone. Here we present the only known exact analytical solutions of the governing equations for the continuum mechanical theory of granular material for two‐dimensional parabolic and three‐dimensional cubic curved stockpiles. Such curved profiles are known to occur experimentally, as well as in the interiors of blast furnaces. The model assumes that the stockpile is composed of two regions, which are an inner rigid region and an outer yield region. For such infinite stockpiles we follow normal practice and determine the force distributions at a certain height and we argue that these forces should approximate those for a stockpile of finite height resting on a horizontal surface. The solutions presented are valid for granular materials which we term ‘highly frictional’, by which we mean that the angle of internal friction φ is such that sinφ ≈1. We note that there exist many real granular materials, for example black and brown coal, possessing angles of internal friction in the range of 60 to 65 degrees, resulting in values of sinφ equal to around 0.87 to 0.91. The exact parametric solution is applied to the outer yield region and it is extended continuously into the inner rigid region. Numerical results for both two‐ and three‐dimensional problems indicate that the magnitudes of the horizontal and the vertical forces at the base have their maximum values at the stockpile extremities. [ABSTRACT FROM PUBLISHER]
- Published
- 2004
- Full Text
- View/download PDF
166. NUMERICAL SIMULATIONS FOR LARGELY DEFORMED BEAMS AND RINGS ADOPTING A NONTENSILE SMOOTHED PARTICLE HYDRODYNAMICS ALGORITHM.
- Author
-
TRAN-DUC, THIEN, MEYLAN, MICHAEL H., and THAMWATTANA, NGAMTA
- Subjects
- *
HYDRODYNAMICS , *ELASTIC deformation , *COMPUTER simulation , *EQUATIONS of state , *ALGORITHMS - Abstract
Three typical elastic problems, including beam bending, truss extension and compression, and two-rings collision are simulated with smoothed particle hydrodynamics (SPH) using Lagrangian and Eulerian algorithms. A contact-force model for elastic collisions and equation of state for pressure arising in colliding elastic bodies are also analytically derived. Numerical validations, on using the corresponding theoretical models, are carried out for the beam bending, truss extension and compression simulations. Numerical instabilities caused by largely deformed particle configurations in finite/large elastic deformations are analysed. The numerical experiments show that the algorithms handle small deformations well, but only the Lagrangian algorithm can handle large elastic deformations. The numerical results obtained from the Lagrangian algorithm also show a good agreement with the theoretical values. [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
- View/download PDF
167. Perturbation solutions for highly frictional granular media
- Author
-
Thamwattana, Ngamta and Hill, James M.
- Abstract
In this paper, we deal with the materials possessing angles of internal friction φfor which 1 − sinφis close to zero, and we use the solution for sinφ 1 as the leading term in a regular perturbation series, where the correction terms are of order 1 − sinφ. In this way we obtain approximate analytical solutions which can be used to describe the behaviour of real granular materials. The solution procedure is illustrated with reference to quasi–static flow through wedge–shaped and conical hoppers. For these two problems, the obtained perturbation solutions are shown to be graphically indistinguishable from the numerical solutions for high angles of internal friction, and for moderately high angles of internal friction the perturbation solutions still provide excellent approximations.
- Published
- 2005
- Full Text
- View/download PDF
168. Stress distributions in highly frictional granular heaps
- Author
-
Thamwattana, Ngamta, Cox, Grant M., and Hill, James M.
- Abstract
The practice of storing granular materials in stock piles occurs throughout the world in many industrial situations. As a result, there is much interest in predicting the stress distribution within a stock pile. In 1981, it was suggested from experimental work that the peak force at the base does not occur directly beneath the vertex of the pile, but at some intermediate point resulting in a ring of maximum pressure. With this in mind, any analytical solution pertaining to this problem has the potential to provide useful insight into this phenomenon. Here, we propose to utilize some recently determined exact parametric solutions of the governing equations for the continuum mechanical theory of granular materials for two and three-dimensional stock piles. These solutions are valid provided sin f = 1, where f is the angle of internal friction, and we term such materials as “highly frictional”. We note that there exists materials possessing angles of internal friction around 60 to 65 degrees, resulting in values of sin f equal to around 0.87 to 0.91. Further, the exact solutions presented here are potentially the leading terms in a perturbation solution for granular materials for which 1- sin f is close to zero. The model assumes that the stock pile is composed of two regions, namely an inner rigid region and an outer yield region. The exact parametric solution is applied to the outer yield region, and the solution is extended continuously into the inner rigid region. The results presented here extend previous work of the authors to the case of highly frictional granular solids.
- Published
- 2004
- Full Text
- View/download PDF
169. A Unified Analytical Approach to Fixed and Moving Boundary Problems for the Heat Equation.
- Author
-
Rodrigo, Marianito R., Thamwattana, Ngamta, and Goodrich, Christopher
- Subjects
- *
INITIAL value problems , *HEAT equation , *PROBLEM solving , *ANALYTICAL solutions - Abstract
Fixed and moving boundary problems for the one-dimensional heat equation are considered. A unified approach to solving such problems is proposed by embedding a given initial-boundary value problem into an appropriate initial value problem on the real line with arbitrary but given functions, whose solution is known. These arbitrary functions are determined by imposing that the solution of the initial value problem satisfies the given boundary conditions. Exact analytical solutions of some moving boundary problems that have not been previously obtained are provided. Moreover, examples of fixed boundary problems over semi-infinite and bounded intervals are given, thus providing an alternative approach to the usual methods of solution. [ABSTRACT FROM AUTHOR]
- Published
- 2021
- Full Text
- View/download PDF
170. Wave Interaction and Overwash with a Flexible Plate by Smoothed Particle Hydrodynamics.
- Author
-
Tran-Duc, Thien, Meylan, Michael H., Thamwattana, Ngamta, and Lamichhane, Bishnu P.
- Subjects
ELASTIC plates & shells ,LAMB waves ,YIELD strength (Engineering) ,FLUID flow ,GEOPHYSICS - Abstract
The motion of a flexible elastic plate under wave action is simulated, and the well–known phenomena of overwash is investigated. The fluid motion is modelled by smoothed particle hydrodynamics, a mesh-free solution method which, while computationally demanding, is flexible and able to simulate complex fluid flows. The freely floating plate is modelled using linear thin plate elasticity plus the nonlinear rigid body motions. This assumption limits the elastic plate motion to be small but is valid for many cases both in geophysics and in the laboratory. The principal conclusion is that the inclusion of flexural motion causes significantly less overwash than that which occurs for a rigid plate. [ABSTRACT FROM AUTHOR]
- Published
- 2020
- Full Text
- View/download PDF
171. Modeling Interactions between Graphene and Heterogeneous Molecules.
- Author
-
Stevens, Kyle, Tran-Duc, Thien, Thamwattana, Ngamta, and Hill, James M.
- Subjects
MOLECULAR dynamics ,GRAPHENE ,MOLECULES ,DISTRIBUTION (Probability theory) ,POTENTIAL functions - Abstract
The Lennard–Jones potential and a continuum approach can be used to successfully model interactions between various regular shaped molecules and nanostructures. For single atomic species molecules, the interaction can be approximated by assuming a uniform distribution of atoms over surfaces or volumes, which gives rise to a constant atomic density either over or throughout the molecule. However, for heterogeneous molecules, which comprise more than one type of atoms, the situation is more complicated. Thus far, two extended modeling approaches have been considered for heterogeneous molecules, namely a multi-surface semi-continuous model and a fully continuous model with average smearing of atomic contribution. In this paper, we propose yet another modeling approach using a single continuous surface, but replacing the atomic density and attractive and repulsive constants in the Lennard–Jones potential with functions, which depend on the heterogeneity across the molecules, and the new model is applied to study the adsorption of coronene onto a graphene sheet. Comparison of results is made between the new model and two other existing approaches as well as molecular dynamics simulations performed using the LAMMPS molecular dynamics simulator. We find that the new approach is superior to the other continuum models and provides excellent agreement with molecular dynamics simulations. [ABSTRACT FROM AUTHOR]
- Published
- 2020
- Full Text
- View/download PDF
172. Interacting Ru(bpy)32+ Dye Molecules and TiO2 Semiconductor in Dye-Sensitized Solar Cells.
- Author
-
Putthikorn, Sasipim, Tran-Duc, Thien, Thamwattana, Ngamta, Hill, James M., and Baowan, Duangkamon
- Subjects
DYE-sensitized solar cells ,RENEWABLE energy sources ,SOLAR cell efficiency ,FOSSIL fuels ,POWER resources ,ALTERNATIVE fuels - Abstract
Solar energy is an alternative source of energy that can be used to replace fossil fuels. Various types of solar cells have been developed to harvest this seemingly endless supply of energy, leading to the construction of solar cell devices, such as dye-sensitized solar cells. An important factor that affects energy conversion efficiency of dye-sensitized solar cells is the distribution of dye molecules within the porous semiconductor (TiO 2 ). In this paper, we formulate a continuum model for the interaction between the dye molecule Tris(2,2 ′ -bipyridyl)ruthenium(II) (Ru(bpy) 3 2 + ) and titanium dioxide (TiO 2 ) semiconductor. We obtain the equilibrium position at the minimum energy position between the dye molecules and between the dye and TiO 2 nanoporous structure. Our main outcome is an analytical expression for the energy of the two molecules as a function of their sizes. We also show that the interaction energy obtained using the continuum model is in close agreement with molecular dynamics simulations. [ABSTRACT FROM AUTHOR]
- Published
- 2020
- Full Text
- View/download PDF
173. Dynamical response of a floating plate to water waves using a smoothed particle hydrodynamics algorithm for nonlinear elasticity.
- Author
-
Tran-Duc, Thien, Meylan, Michael H., and Thamwattana, Ngamta
- Subjects
- *
LAMB waves , *ELASTIC waves , *ELASTICITY , *HYDRODYNAMICS , *ELASTIC plates & shells , *WATER waves , *OCEAN waves - Abstract
In this work, a newly developed Smoothed Particle Hydrodynamics (SPH) algorithm for nonlinear elasticity is combined with an incompressible SPH fluid solver to investigate the dynamics of a floating plate under impacts of regular water waves with a high steepness. Two scenarios of the plate's rigidity are investigated. The simulation results show that deformations of the stiffer plate mainly occur in a simple bending mode with small amplitudes, and the plate is almost submerged by a strong fluid flow over its surface. In the other scenario, the plate deforms more complexly with much higher deformation amplitudes but experiences a much weaker overwash. The more flexible plate is less resistant to wave motions and converts more wave energy into elastic deformations, and therefore, the overwash is less severe. A strong overflow exerts a pressure force onto the plate that alters the plate's dynamics and adds a viscous (damping) effect on the plate's elastic vibrations, especially in high-frequency modes. A rigorous examination of the numerical convergence and validation using the linear thin plate theory is also carried out. The new SPH algorithm for nonlinear elasticity shows its stability and reliability in evaluating finite and large elastic deformations. Therefore, it is promising for simulating elastic structures in fluid–structure interaction problems. [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
- View/download PDF
174. NUMERICAL SOLUTIONS TO A FRACTIONAL DIFFUSION EQUATION USED IN MODELLING DYE-SENSITIZED SOLAR CELLS.
- Author
-
MALDON, BENJAMIN, LAMICHHANE, BISHNU PRASAD, and THAMWATTANA, NGAMTA
- Subjects
- *
DYE-sensitized solar cells , *HEAT equation , *RENEWABLE energy sources , *PHOTOVOLTAIC power systems , *FINITE difference method , *FINITE element method , *ELECTRON transport - Abstract
Dye-sensitized solar cells consistently provide a cost-effective avenue for sources of renewable energy, primarily due to their unique utilization of nanoporous semiconductors. Through mathematical modelling, we are able to uncover insights into electron transport to optimize the operating efficiency of the dye-sensitized solar cells. In particular, fractional diffusion equations create a link between electron density and porosity of the nanoporous semiconductors. We numerically solve a fractional diffusion model using a finite-difference method and a finite-element method to discretize space and an implicit finite-difference method to discretize time. Finally, we calculate the accuracy of each method by evaluating the numerical errors under grid refinement. [ABSTRACT FROM AUTHOR]
- Published
- 2021
- Full Text
- View/download PDF
175. Conformation of graphene folding around single-walled carbon nanotubes.
- Author
-
Dyer, Tom, Thamwattana, Ngamta, and Cox, Barry
- Subjects
- *
GRAPHENE synthesis , *SINGLE walled carbon nanotubes , *BENDING (Metalwork) , *ELECTRON transport , *EULER-Lagrange equations - Abstract
The low bending rigidity of graphene facilitates the formation of folds into the structure. This curvature change affects the reactivity and electron transport of the sheet. One novel extension of this is the intercalation of small molecules into these folds. We construct a model incorporating a single-walled carbon nanotube into a sheet of folded graphene. Variational calculus techniques are employed to determine the minimum energy structure and the resulting curves are shown to agree well with molecular dynamics study.Using calculus of variations, the elastic bending energy and van der Waals energy are minimised giving rise to Euler-Lagrange equation for which analytical solutions are derived to determine the optimal curved sturctures of graphene wrapped around carbon nanotubes. Overall agreement between the analytical solutions (with different values of bending rigidities) and results from molecular dynamics simulations (grey) is shown here for (6,6), (8,8) and (10,10) armchair nanotubes, respectively.
[ABSTRACT FROM AUTHOR]
- Published
- 2018
- Full Text
- View/download PDF
176. Adsorption of polycyclic aromatic hydrocarbons on graphite surfaces
- Author
-
Tran-Duc, Thien, Thamwattana, Ngamta, Cox, Barry J., and Hill, James M.
- Subjects
- *
POLYCYCLIC aromatic hydrocarbons , *ADSORPTION (Chemistry) , *GRAPHITE , *SURFACE chemistry , *COMBUSTION , *ORGANIC wastes , *MATHEMATICAL models , *VAN der Waals forces - Abstract
Abstract: Polycyclic aromatic hydrocarbons (PAHs) are emitted into the atmosphere as byproducts from combustion. Once emitted into the atmosphere, PAHs either can exist in the gas phase or they can be adsorbed onto particle surfaces, such as soot and charcoal. PAHs are one of the most widespread pollutants and are known carcinogens, mutagens and teratologies for humans. Unfortunately, they are easily inhaled when absorbed on the surfaces of airborne soot particles produced by the incomplete combustion of carbonaceous fuels. Studying the mechanism of adsorption of PAHs onto soot surfaces is therefore an important problem. In this work, we chose coronene (C24H12) to model the interaction between a typical PAH and a graphite surface. We comment that using conventional computational methods, such as full ab initio, is usually not feasible owing to the large molecules involved. Accordingly, we adopt an applied mathematical modelling approach and we therefore exploit the continuous atomistic approximation together with the Lennard–Jones potential in order to investigate this problem. The major result of this study is an analytical expression for the interaction energy which we then use to describe the mechanism of adsorption of a coronene molecule on a graphite surface. [ABSTRACT FROM AUTHOR]
- Published
- 2010
- Full Text
- View/download PDF
177. Modelling locust foraging: How and why food affects group formation.
- Author
-
Georgiou, Fillipe, Buhl, Jerome, Green, J. E. F., Lamichhane, Bishnu, and Thamwattana, Ngamta
- Subjects
- *
GROUP formation , *LOCUSTS , *PARTIAL differential equations , *LOCAL foods , *MARCHING bands - Abstract
Locusts are short horned grasshoppers that exhibit two behaviour types depending on their local population density. These are: solitarious, where they will actively avoid other locusts, and gregarious where they will seek them out. It is in this gregarious state that locusts can form massive and destructive flying swarms or plagues. However, these swarms are usually preceded by the aggregation of juvenile wingless locust nymphs. In this paper we attempt to understand how the distribution of food resources affect the group formation process. We do this by introducing a multi-population partial differential equation model that includes non-local locust interactions, local locust and food interactions, and gregarisation. Our results suggest that, food acts to increase the maximum density of locust groups, lowers the percentage of the population that needs to be gregarious for group formation, and decreases both the required density of locusts and time for group formation around an optimal food width. Finally, by looking at foraging efficiency within the numerical experiments we find that there exists a foraging advantage to being gregarious. Author summary: Locusts are short horned grass hoppers that live in two diametrically opposed behavioural states. In the first, solitarious, they will actively avoid other locusts, whereas the second, gregarious, they will actively seek them out. It is in this gregarious state that locusts form the recognisable and destructive flying adult swarms. However, prior to swarm formation juvenile flightless locusts will form marching hopper bands and make their way from food source to food source. Predicting where these hopper bands might form is key to controlling locust outbreaks. Research has shown that changes in food distributions can affect the transition from solitarious to gregarious. In this paper we construct a mathematical model of locust-locust and locust-food interactions to investigate how food distributions affect the aggregation of juvenile locusts, termed groups, an important precursor to hopper bands. Our findings suggest that there is an optimal food distribution for group formation and that being gregarious increases a locusts ability to forage when food becomes more patchy. [ABSTRACT FROM AUTHOR]
- Published
- 2021
- Full Text
- View/download PDF
178. Pneumatic Conveying
- Author
-
Michael Meylan, Edward Bissaker, Ognjen Orozovic, Fillipe Georgiou, Tomas Marsh, James Hill, Mark McGuinness, Winston Sweatman, Ngamta Thamwattana, Bissaker, Edward J, Orozovic, Ognjen, Meylan, Michael H, Georgiou, Fillipe, Marsh, Tomas J, Hill, James M, McGuinness, Mark J, Sweatman, Winston L, and Thamwattana, Ngamta
- Subjects
slug flow ,pneumatic conveying ,General Medicine - Abstract
Pneumatic conveying is the transportation of bulk solids in enclosed pipelines via a carrier gas, typically air. The local flow pattern in a pipeline is a function of the conditions, and slug flow can form under certain conditions. Slug flow is a naturally occurring, wave-like flow where the bulk material travels along the pipeline in distinct `slugs'. Establishing the environment for the formation of slugs within the conveying system is essential to maximise the overall system efficiency and minimise damage to the bulk material. MISG2021 considered a wide range of mathematical approaches to slug formation and travel. These two key problem areas have the most significant potential to impact the system design and efficiency. Critical interconnected facets of pneumatic conveying systems were investigated and an overview for future work was developed. Many of the avenues uncovered during the MISG2021 require more time for in-depth analysis. This analysis and framework will aid in optimising conveying system design and provide insight to construct more efficient pneumatic conveying systems. Refereed/Peer-reviewed
- Published
- 2023
179. A smoothed particle hydrodynamics study on effect of coarse aggregate on self-compacting concrete flows.
- Author
-
Tran-Duc, Thien, Ho, Thinh, and Thamwattana, Ngamta
- Subjects
- *
SELF-consolidating concrete , *HYDRODYNAMICS , *PARTICLES , *PIPE flow , *YIELD stress , *RIGID bodies - Abstract
• Fresh concrete containing cement mortar and coarse aggregates is studied using a two-phase Smoothed Particle Hydrodynamics model. • Effect of size and volume fraction of coarse aggregates on rheological properties of fresh concrete is examined. • Effective yield stress and effective plastic viscosity are found to increase with coarse aggregate content, yet at different rates. • The increase of the effective yield stress is found to be smaller for larger coarse aggregates. • Flow rate is seen to decrease with increase of the coarse aggregate content, and be slightly greater for larger coarse aggregates. Coarse aggregates increase inhomogeneity and alter rheological properties of self-compacting concrete. In this work, the effect of coarse aggregates on self-compacting concrete is studied by considering its pipe flow. Self-compacting concrete is modelled as suspension of coarse aggregates in cement mortar and a two-phase Smoothed Particle Hydrodynamics (SPH) model is employed. Cement mortar, a yield-stress fluid, is modelled by fluid SPH particles, while each coarse aggregate is represented by a group of solid SPH particles, which moves as a rigid body. Simulation results show that, at the same volume fractions, the flow rate is higher for larger coarse aggregates, that is up to 24% in the investigated cases. Both effective yield stress and effective plastic viscosity of the concretes increase with the coarse aggregate content. Effective yield stress is smaller for bigger coarse aggregates. The reduction in effective yield stress is a consequence of bigger averaged gap between larger coarse aggregates through which the cement mortar flows. [ABSTRACT FROM AUTHOR]
- Published
- 2021
- Full Text
- View/download PDF
180. Modeling Interactions between Graphene and Heterogeneous Molecules
- Author
-
Kyle Stevens, Thien Tran-Duc, James M. Hill, Ngamta Thamwattana, Stevens, Kyle, Tran-Duc, Thien, Thamwattana, Ngamta, and Hill, James M
- Subjects
Materials science ,Nanostructure ,General Computer Science ,02 engineering and technology ,010402 general chemistry ,01 natural sciences ,lcsh:QA75.5-76.95 ,Theoretical Computer Science ,law.invention ,chemistry.chemical_compound ,Molecular dynamics ,coronene ,law ,Physics::Atomic and Molecular Clusters ,Molecule ,Continuum Modeling ,continuum modeling ,Graphene ,Continuous modelling ,Applied Mathematics ,graphene ,021001 nanoscience & nanotechnology ,Coronene ,Lennard–Jones potential ,0104 chemical sciences ,chemistry ,Lennard-Jones potential ,Chemical physics ,adsorption ,Modeling and Simulation ,lcsh:Electronic computers. Computer science ,0210 nano-technology - Abstract
The Lennard&ndash, Jones potential and a continuum approach can be used to successfully model interactions between various regular shaped molecules and nanostructures. For single atomic species molecules, the interaction can be approximated by assuming a uniform distribution of atoms over surfaces or volumes, which gives rise to a constant atomic density either over or throughout the molecule. However, for heterogeneous molecules, which comprise more than one type of atoms, the situation is more complicated. Thus far, two extended modeling approaches have been considered for heterogeneous molecules, namely a multi-surface semi-continuous model and a fully continuous model with average smearing of atomic contribution. In this paper, we propose yet another modeling approach using a single continuous surface, but replacing the atomic density and attractive and repulsive constants in the Lennard&ndash, Jones potential with functions, which depend on the heterogeneity across the molecules, and the new model is applied to study the adsorption of coronene onto a graphene sheet. Comparison of results is made between the new model and two other existing approaches as well as molecular dynamics simulations performed using the LAMMPS molecular dynamics simulator. We find that the new approach is superior to the other continuum models and provides excellent agreement with molecular dynamics simulations.
- Published
- 2020
181. Continuum Modelling for Interacting Coronene Molecules with a Carbon Nanotube
- Author
-
Ngamta Thamwattana, Kyle Stevens, James M. Hill, Thien Tran-Duc, Stevens, Kyle, Tran-Duc, Thien, Thamwattana, Ngamta, and Hill, James M
- Subjects
Nanotube ,Materials science ,General Chemical Engineering ,Stacking ,Carbon nanotube ,Molecular physics ,Article ,law.invention ,lcsh:Chemistry ,chemistry.chemical_compound ,Condensed Matter::Materials Science ,coronene ,law ,continuum modelling ,Physics::Atomic and Molecular Clusters ,Molecule ,General Materials Science ,stacked columns ,carbon nanotubes ,Lennard-Jones potential ,Keywords ,Potential energy ,Coronene ,Zigzag ,chemistry ,lcsh:QD1-999 ,Computer Science::Programming Languages - Abstract
The production of single dimensional carbon structures has recently been made easier using carbon nanotubes. We consider here encapsulated coronene molecules, which are flat and circular-shaped polycyclic aromatic hydrocarbons, inside carbon nanotubes. Depending on the radius of the nanotube, certain specific configurations of the coronene molecules can be achieved that give rise to the formation of stacked columns or aid in forming nanoribbons. Due to their symmetrical structure, a coronene molecule may be modelled by three inner circular rings of carbon atoms and one outer circular ring of hydrogen atoms, while the carbon nanotube is modelled as a circular tube. Using the continuous model and the Lennard-Jones potential, we are able to analytically formulate an expression for the potential energy for a coronene dimer and coronene inside a carbon nanotube. Subsequently, stacking of coronene molecules inside a nanotube is investigated. We find that the minimum energy tilt angle of coronenes in a stack differs from that of a single coronene within the same nanotube. More specifically, for both (18, 0) and (19, 0) zigzag carbon nanotube, we find that the minimum energy tilt angles of the single coronene case (&asymp, 42 ∘ and &asymp, 20 ∘ respectively) do not occur in the stack model.
- Published
- 2020
- Full Text
- View/download PDF
182. Interacting Ru(bpy)²⁺₃ dye molecules and TiO2 semiconductor in dye-sensitized solar cells
- Author
-
Putthikorn , Sasipim, Tran-Duc, Thien, Thamwattana, Ngamta, Hill, James M, and Baowan, Duangkamon
- Subjects
tris(2,20-bipyridyl)ruthenium(II) ,titanium dioxide ,equilibrium position ,interaction energy - Abstract
Solar energy is an alternative source of energy that can be used to replace fossil fuels.Various types of solar cells have been developed to harvest this seemingly endless supply of energy,leading to the construction of solar cell devices, such as dye-sensitized solar cells. An importantfactor that affects energy conversion efficiency of dye-sensitized solar cells is the distribution ofdye molecules within the porous semiconductor (TiO2). In this paper, we formulate a continuummodel for the interaction between the dye molecule Tris(2,20-bipyridyl)ruthenium(II) (Ru(bpy)2+3 )and titanium dioxide (TiO2) semiconductor. We obtain the equilibrium position at the minimumenergy position between the dye molecules and between the dye and TiO2 nanoporous structure.Our main outcome is an analytical expression for the energy of the two molecules as a function oftheir sizes. We also show that the interaction energy obtained using the continuum model is in closeagreement with molecular dynamics simulations. Refereed/Peer-reviewed
- Published
- 2020
183. Correction: Modelling locust foraging: How and why food affects group formation.
- Author
-
Georgiou, Fillipe, Buhl, Jerome, Green, J. E. F., Lamichhane, Bishnu, and Thamwattana, Ngamta
- Subjects
- *
GROUP formation , *LOCUSTS - Abstract
There are errors in three equations in S1 Appendix and S3 Appendix. Please view the correct S1 Appendix, S3 Appendix, and Reference 51 below. [Extracted from the article]
- Published
- 2021
- Full Text
- View/download PDF
184. Modelling van der Waals Interaction Between Water Molecules and Biological Channels
- Author
-
Hakim Al Garalleh, Ngamta Thamwattana, Barry J. Cox, James M. Hill, Al, Garalleh Hakim, Thamwattana, Ngamta, Cox, Barry, and Hill, James M
- Subjects
chemistry.chemical_classification ,Van der Waals interaction ,Lennard-jones potential ,Van der Waals strain ,Van der Waals surface ,General Chemistry ,Condensed Matter Physics ,aquaporins (AQPs) ,water molecule ,Computational Mathematics ,symbols.namesake ,Lennard-Jones potential ,chemistry ,Chemical physics ,symbols ,Non-covalent interactions ,Molecule ,aquaporinZ (AqpZ) and aquaglyceroporins (GlpF) ,General Materials Science ,Electrical and Electronic Engineering ,van der Waals force - Abstract
We examine the van der Waals interactions between water molecules with both water channels, aquaporin-Z and glycerol channel GlpF. Here we model these problems using classical applied mathematics and obtain the potential energy for a water molecule interacting with the channels which we assume in both cases to have a flaired right cylindrical geometry. We propose a continuous model where all the atoms comprising the channels are assumed to be uniformly distributed within their volume. We model a water molecule as comprising two parts: firstly as a single point representing the location of the oxygen atom, and a spherical shell over which we assume a uniform distribution of the two hydrogen atoms. Our results indicate the spontaneous acceptance of water molecules into these channels. Refereed/Peer-reviewed
- Published
- 2013
185. Modelling carbon dioxide molecule interacting with aquaglyceroporin and aquaporin-1 channels
- Author
-
James M. Hill, Hakim Al Garalleh, Barry J. Cox, Ngamta Thamwattana, Al, Garalleh Hakim, Thamwattana, Ngamta, Cox, Barry, and Hill, Jim
- Subjects
Chemistry ,Van der Waals interaction ,Applied Mathematics ,aquaporin-1 (AQP1) ,Lennard-Jones potential ,Aquaporin ,Nanotechnology ,General Chemistry ,Permeation ,aquaporins (AQPs) ,symbols.namesake ,Membrane ,aquaglyceroporin (GlpF) ,Chemical physics ,Aquaporin 1 ,carbon dioxide (CO2) ,symbols ,Molecule ,van der Waals force ,Selectivity - Abstract
Aquaporin (AQP) is a family of membrane proteins that enable water and small individual molecules to permeate cell membranes. Examples of these protein channels are aquaglyceroporin and aquaporin-1 (AQP1). Here, we investigate the permeability of carbon dioxide $$(\hbox {CO}_2)$$ through both aquglyceroporin and AQP1 channels and explain their selectivity mechanisms. We provide a mathematical model which determines the molecular interaction potential between carbon dioxide molecule and an AQP channel. We evaluate this interaction using two approaches, namely discrete-continuum and completed discrete approaches. Both calculations agree well and our results indicate the acceptance of $$(\hbox {CO}_2)$$ molecule into these channels which is in good agreement with other recent studies.
- Published
- 2013
186. Modelling interaction between ammonia and nitric oxide molecules and aquaporins
- Author
-
James M. Hill, Ngamta Thamwattana, Hakim Al Garalleh, Barry J. Cox, Al, Garalleh Hakim, Thamwattana, Ngamta, Cox, Barry J, and Hill, James M
- Subjects
Hydrogen ,Applied Mathematics ,aquaporin-1 (AQP1) ,Oxide ,Aquaporin ,chemistry.chemical_element ,General Chemistry ,aquaporins (AQPs) a ,Potential energy ,Nitric oxide ,chemistry.chemical_compound ,symbols.namesake ,aquaglyceroporin (GlpF) ,van der Waals interaction ,chemistry ,Lennard-Jones potential ,Chemical physics ,Computational chemistry ,ammonia molecule (NH3) ,symbols ,Molecule ,Physics::Chemical Physics ,van der Waals force - Abstract
Aquaporin is a family of small membrane-proteins that are capable of transporting nano-sized materials. In the present paper, we investigate the structure of these channels and provide information about the mechanism of individual molecules being encapsulated into aquaglyceroporin (GlpF) and aquaporin-1 (AQP1) channels by calculating the potential energy. In particular, we presents a mathematical model to determine the total potential energy for the interaction of the ammonia and nitric oxide molecules and different aquaporin channels which we assume to have a symmetrical cylindrical structure. We propose to describe these interactions in two steps. Firstly, we model the nitrogen atom as a discrete point and secondly, we model the three hydrogen atoms on the surface of a sphere of a certain radius. Then, we find the total potential energy by summing these interactions. Next, by considering the nitric oxide molecule as two discrete atoms uniformly distributed interacting with GlpF and AQP1 channels then gathering all pairs of interaction to determine the potential energy. Our results show that the ammonia and nitric oxide molecules can be encapsulated into both GlpF and AQP1 channels Refereed/Peer-reviewed
- Published
- 2013
187. Modelling Lennard-Jones Interactions Between Two Peptide Rings
- Author
-
James M. Hill, Ngamta Thamwattana, Fainida Rahmat, Rahmat, Fainida, Thamwattana, Ngamta, and Hill, James M
- Subjects
Van der waals interactions ,chemistry.chemical_classification ,Quantitative Biology::Biomolecules ,peptide nanotubes ,Chemistry ,Lennard-jones potential ,Peptide ,General Chemistry ,Condensed Matter Physics ,Computational Mathematics ,symbols.namesake ,Lennard-Jones potential ,Peptide Nanotubes ,Computational chemistry ,symbols ,General Materials Science ,Electrical and Electronic Engineering ,van der Waals force - Abstract
In recent years, peptide nanotubes have been studied extensively due to their unique structure and their potential applications in many diverse fields such as biology, chemistry, material science and medicine. Here, we determine the Lennard-Jones interactions between peptide rings through simple applied mathematical modelling as a first step towards fully understanding the formation of the complex structure of peptide nanotubes. In this paper we study the interaction potential between a pair of cyclo[(-D-Ala-L-Ala)(4)-] and a pair of cyclo[(Gly-D-Ala)(4)] which are the simplest possible units comprising a peptide nanotube. We assume the continuum approximation that the atoms maybe smeared uniformly over the peptide ring providing an average atomic density and the Lennard Jones potential to obtain the interaction energy between two peptide rings. Our results show that the two peptide rings reach equilibrium when the perpendicular distance between the centre of the two rings is 4.45-5.38 angstrom, and the minimum energy is 14.86-23.65 kcal/mol occuring when the second ring tilts at an angle 0.2443-0.3316 radian from the first ring. These results are in agreement with several recent molecular dynamics studies. Refereed/Peer-reviewed
- Published
- 2013
188. Encapsulation of L-Histidine amino acid inside single-walled carbon nanotubes
- Author
-
Hakim Al Garalleh, James M. Hill, Ngamta Thamwattana, Barry J. Cox, Garalleh, Hakim Al, Thamwattana, Ngamta, Cox, Barry J, and Hill, James M
- Subjects
Biomedical Engineering ,Medicine (miscellaneous) ,Bioengineering ,02 engineering and technology ,Carbon nanotube ,010402 general chemistry ,01 natural sciences ,law.invention ,Condensed Matter::Materials Science ,law ,Histidine ,chemistry.chemical_classification ,Quantitative Biology::Biomolecules ,carbon nanotubes ,L-histidine amino acid ,Van der Waals interaction ,Lennard-Jones potential ,021001 nanoscience & nanotechnology ,Condensed Matter::Mesoscopic Systems and Quantum Hall Effect ,Quantitative Biology::Genomics ,0104 chemical sciences ,Encapsulation (networking) ,Amino acid ,chemistry ,Chemical engineering ,encapsulation ,0210 nano-technology ,Biotechnology - Abstract
Carbon nanotubes have attracted considerable interest for their use as carriers of drugs across biological barriers. In this work, we investigate the encapsulation of L-Histidine amino acid inside a single-walled carbon nanotube, and determine the resultant interaction energy for various sizes of the nanotubes. In our model, the L-Histidine amino acid is accounted for in four parts; the inner ring group, the half outer group, the linear part and the cylinder group, all interacting with a single-walled carbon nanotube. We calculate the acceptance and suction energies which depend on the radius r of the carbon nanotube and the orientation angle Ø that the amino acid makes with the central axis of the nanotube. Our results indicate the acceptance of the L-Histidine amino acid into carbon nanotubes of r >3.7 Å, which is in good agreement with other recent studies. Refereed/Peer-reviewed
- Published
- 2016
189. Orientation of a benzene molecule inside a carbon nanotube
- Author
-
Ngamta Thamwattana, James M. Hill, Thien Tran-Duc, Tran-Duc, Thien, Thamwattana, Ngamta, and Hill, James M
- Subjects
Nanotube ,Fullerene ,Chemistry ,Graphene ,Applied Mathematics ,graphene ,chemistry.chemical_element ,General Chemistry ,Carbon nanotube ,Interaction energy ,Molecular physics ,law.invention ,Carbon nanotube quantum dot ,symbols.namesake ,Computational chemistry ,law ,Physics::Atomic and Molecular Clusters ,symbols ,benzene molecule ,carbon nanotube ,Physics::Chemical Physics ,van der Waals force ,Carbon - Abstract
Benzene molecules confined in carbon nanotubes of varying radii are employed as semiconductors in electronic nanodevices, and their orientation determines the electrical properties of the system. In this paper, we investigate the interaction energy of all the possible configurations of a benzene molecule inside various carbon nanotubes and then we determine the equilibrium configuration. We adopt the continuous approach together with the semi-empirical Lennard-Jones potential function to model van der Waals interaction between a benzene molecule and a carbon nanotube. This approach results in an analytical expression, which accurately approximates the interaction energy and can be readily used to generate numerical data. We find that horizontal, tilted and perpendicular configurations on the axis of the carbon nanotube are all possible equilibrium configurations of the benzene molecule when the radius of the carbon nanotube is less than 5.580 . However, when the radius of the carbon nanotube is larger than 5.580 an offset horizontal orientation is the only possible equilibrium configuration of the benzene molecule. In the limiting case, the orientation of a benzene molecule on a graphene sheet can be derived simply by letting the radius of the carbon nanotube tend to infinity. Refereed/Peer-reviewed
- Published
- 2011
190. Nanotube bundle oscillators: Carbon and boron nitride nanostructures
- Author
-
James M. Hill, Ngamta Thamwattana, Thamwattana, Ngamta, and Hill, James M
- Subjects
Nanotube ,Fullerene ,Materials science ,nanotube bundles ,Nanotechnology ,Carbon nanotube ,Nitride ,Molecular physics ,law.invention ,Condensed Matter::Materials Science ,chemistry.chemical_compound ,Mathematics::Algebraic Geometry ,law ,Physics::Atomic and Molecular Clusters ,Electrical and Electronic Engineering ,Mathematics::Symplectic Geometry ,carbon nanotubes ,Oscillation ,fullerenes ,Lennard-Jones potential ,gigahertz oscillators ,Condensed Matter::Mesoscopic Systems and Quantum Hall Effect ,Condensed Matter Physics ,Electronic, Optical and Magnetic Materials ,Carbon nanotube quantum dot ,chemistry ,Boron nitride ,Bundle ,Boron nitride nanotubes - Abstract
In this paper, we investigate the oscillation of a fullerene that is moving within the centre of a bundle of nanotubes. In particular, certain fullerene–nanotube bundle oscillators, namely C 60 -carbon nanotube bundle, C 60 -boron nitride nanotube bundle, B 36 N 36 -carbon nanotube bundle and B 36 N 36 -boron nitride nanotube bundle are studied using the Lennard–Jones potential and the continuum approach which assumes a uniform distribution of atoms on the surface of each molecule. We address issues regarding the maximal suction energies of the fullerenes which lead to the generation of the maximum oscillation frequency. Since bundles are also found to comprise double-walled nanotubes, this paper also examines the oscillation of a fullerene inside a double-walled nanotube bundle. Our results show that the frequencies obtained for the oscillation within double-walled nanotube bundles are slightly higher compared to those of single-walled nanotube bundle oscillators. Our primary purpose here is to extend a number of established results for carbon to the boron nitride nanostructures.
- Published
- 2009
191. Mechanics of nanoscale orbiting systems
- Author
-
Grant M. Cox, Ngamta Thamwattana, James M. Hill, Yue Chan, Chan, Yue, Thamwattana, Ngamta, Cox, Barry, and Hill, James M
- Subjects
Fullerene ,carbon nanotubes ,Mathematical chemistry ,Chemistry ,Applied Mathematics ,fullerenes ,gigahertz frequency ,Perturbation (astronomy) ,General Chemistry ,Carbon nanotube ,Potential energy ,Molecular physics ,orbiting systems ,law.invention ,symbols.namesake ,Classical mechanics ,law ,Atom ,Physics::Atomic and Molecular Clusters ,symbols ,Lennard-Jones ,van der Waals force ,Nanoscopic scale - Abstract
At the nanoscale a number of very high frequency oscillating systems involving relative motion with respect to a carbon nanotube have been identified. In this paper, we study the two-body systems of an atom and a fullerene C60 orbiting around a single infinitely long carbon nanotube and a fullerene C60 orbiting around a fullerene C1500. The van der Waals interaction forces are modeled using the Lennard–Jones potential together with the continuum approach for which carbon atoms are assumed to be uniformly distributed over the surfaces of both the fullerenes and the carbon nanotube. Some analytical and perturbation solutions are obtained for the regime where the attractive term of the potential energy dominates. Certain circular orbiting radii of these nanoscale systems are estimated using a stability argument and the corresponding circular orbiting frequencies can then be calculated by investigating the minimum energy configuration of their effective potential energies. We find that the circular orbiting frequencies of the various proposed nano-systems are in the gigahertz range. Finally, the classification of their orbiting paths is determined numerically.
- Published
- 2009
192. Suction energy and offset configuration for double-walled carbon nanotubes
- Author
-
James M. Hill, Ngamta Thamwattana, Duangkamon Baowan, Baowan, Duangkamon, Thamwattana, Ngamta, and Hill, Jim
- Subjects
Numerical Analysis ,Materials science ,Mechanical equilibrium ,Nanostructure ,Fullerene ,Applied Mathematics ,Lennard-Jones potential ,suction energy ,Carbon nanotube ,Mechanics ,offset configuration ,double-walled carbon nanotubes ,law.invention ,Carbon nanotube quantum dot ,Molecular dynamics ,Classical mechanics ,law ,Modeling and Simulation ,Nanotube membrane - Abstract
Nanostructures such as carbon nanotubes and fullerenes offer the means to create new mechanical devices operating at the nanoscale. Such devices include oscillators constructed from an inner carbon nanotube sliding inside another carbon nanotube. The resultant oscillatory frequency is found to be in the gigahertz range and they have applications in the computing industry for signalling devices, such as an ultra-fast optical filter. While most research in the area is dominated by molecular dynamics simulations, our approach here is to use elementary mechanical principles and classical applied mathematical modelling techniques to formulate explicit analytical criteria and ideal model behaviour. In this paper, we first investigate the suction force experienced by a single-walled carbon nanotube located near an open end of a semi-infinite single-walled carbon nanotube, using the Lennard-Jones potential and the continuum approximation. Second the equilibrium position of an offset inner tube with reference to the cross-section of the outer tube is determined Refereed/Peer-reviewed
- Published
- 2008
193. Modeling interactions between C60 antiviral compounds and HIV protease
- Author
-
Al Garalleh, Hakim, Thamwattana, Ngamta, Cox, Barry J, and Hill, James M
- Subjects
O-Carboxymethoxyl-amine ,tris-hydroxymethyl-amine ,Human immunodeficiency virus (HIV-1 and HIV-2) ,N-Carboxymethoxyl-amine ,van der Waals interaction ,Lennard-Jones potential ,3-Azido-3-deoxythemidine ,Fullerene C60 - Abstract
Fullerenes have generated a great deal of interest in recent years, due to their properties and potential applications in many fields, including medicine. In this paper, we study an antiviral fullerene compound which may be used to treat the human immunodeficiency virus (HIV). We formulate a mathematical model which can describe the interaction energy between the C antiviral compounds and the HIV. In particular, this paper predicts the energy and force arising from the interaction between HIV active region and the antiviral molecule which is attached to the external surface of a fullerene C.These interactions are calculated based on the structure of the antiviral molecules. Our results show that the binding of fullerene C to the antiviral molecules increases the efficiency of the compound to prohibit the activity of HIV. Refereed/Peer-reviewed
- Published
- 2015
194. Oscillation of carbon molecules inside carbon nanotube bundles
- Author
-
Barry J. Cox, James M. Hill, Ngamta Thamwattana, Thamwattana, Ngamta, Cox, Barry, and Hill, Jim
- Subjects
carbon nanotubes ,Oscillation ,Chemistry ,Continuum (design consultancy) ,chemistry.chemical_element ,Carbon nanotube ,Radius ,Condensed Matter Physics ,Molecular physics ,law.invention ,carbon molecules ,Molecular dynamics ,Classical mechanics ,law ,Bundle ,Molecule ,General Materials Science ,Carbon - Abstract
In this paper, we investigate the mechanics of a nanoscaled gigahertz oscillator comprising a carbon molecule oscillating within the centre of a uniform concentric ring or bundle of carbon nanotubes. Two kinds of oscillating molecules are considered, which are a carbon nanotube and a C(60) fullerene. Using the Lennard-Jones potential and the continuum approach, we obtain a relation between the bundle radius and the radii of the nanotubes forming the bundle, as well as the optimum bundle size which gives rise to the maximum oscillatory frequency for both the nanotube-bundle and the C(60)-bundle oscillators. While previous studies in this area have been undertaken through molecular dynamics simulations, this paper emphasizes the use of applied mathematical modelling techniques, which provides considerable insight into the underlying mechanisms of the nanoscaled oscillators. The paper presents a synopsis of the major results derived in detail by the present authors (Cox et al 2007 Proc. R. Soc. A 464 691-710 and Cox et al 2007 J. Phys. A: Math. Theor. 40 13197-208).
- Published
- 2011
195. Encapsulation of a benzene molecule into a carbon nanotube
- Author
-
Barry J. Cox, James M. Hill, Ngamta Thamwattana, Thien Tran-Duc, Tran-Duc, Thien, Thamwattana, Ngamta, Cox, Barry J, and Hill, James M
- Subjects
General Computer Science ,Selective chemistry of single-walled nanotubes ,General Physics and Astronomy ,Carbon nanotube ,law.invention ,symbols.namesake ,Condensed Matter::Materials Science ,benzene ,Computational chemistry ,law ,Molecule ,General Materials Science ,Nanotube membrane ,Physics::Chemical Physics ,chemistry.chemical_classification ,carbon nanotubes ,General Chemistry ,Interaction energy ,polycyclic hydrocarbons ,Computational Mathematics ,Carbon nanobud ,chemistry ,Mechanics of Materials ,Chemical physics ,symbols ,van der Waals force ,Aromatic hydrocarbon - Abstract
Aromatic hydrocarbon molecules encapsulated in carbon nanotubes have been proposed for applications as semiconductors. They can be formed by exploiting the van der Waals interaction as a simple method to incorporate molecules into carbon nanotubes. However, the existence of energy barriers near the open ends of carbon nanotubes may be an obstacle for molecules entering carbon nanotubes. In this paper, we investigate the encapsulation mechanism of a typical aromatic hydrocarbon, namely a benzene molecule, into a carbon nanotube in order to determine the dependence on radius of the tube. A continuous approach which assumes that the molecular interactions can be approximated using average atomic densities together with the semi-empirical Lennard-Jones potential function is adopted, and an analytical expression for the interaction energy is obtained which may be readily evaluated by algebraic computer packages. In particular, we determine the threshold radius of the carbon nanotube for which the benzene molecule will enter the carbon nanotube. The analytical approach adopted here provides a computationally rapid procedure for the determination of critical numerical values. Refereed/Peer-reviewed
- Published
- 2011
196. Axial buckling of multi-walled carbon nanotubes and nanopeapods
- Author
-
Yue Chan, James M. Hill, Ngamta Thamwattana, Chan, Yue, Thamwattana, Ngamta, and Hill, James M
- Subjects
Nanotube ,Fullerene ,Materials science ,General Physics and Astronomy ,Mechanical properties of carbon nanotubes ,Carbon nanotube ,law.invention ,symbols.namesake ,law ,General Materials Science ,buckling ,Donnell's equilibrium equation ,van der Waals interactions ,Mechanical Engineering ,Mechanics ,Carbon nanoubtues ,Casimir effect ,Metallofullerenes ,Classical mechanics ,Mechanics of Materials ,symbols ,Euler–Bernoulli beam theory ,Euler-Bernoulli beam theory ,van der Waals force ,Nanopeapods ,Beam (structure) - Abstract
n this paper, we investigate both pre- and post-buckling behaviors of multi-walled carbon nanotubes and multi-walled carbon nanopeapods by incorporating into the applied forces of a prescribed beam equation both van der Waals interactions between the adjacent walls of the nanotubes and the interactions between the fullerenes and the inner wall of the nanotube. Two beam theories are employed. First, we utilize Donnell's equilibrium equation to derive an axial stability condition for the multi-walled carbon nanotubes and multi-walled carbon nanopeapods. We then determine analytically the critical forces for single-walled and double-walled nanotubes and nanopeapods. Given the outer nanotube of a fixed radius, we observe that the critical force and strain derived from the axial buckling stability criterion decrease as a result of the molecular interactions between the adjacent layers of the nanotubes and the molecular interactions between the embedded fullerenes and the inner carbon nanotube, which is in agreement with existing literature. Next, we utilize an Euler-Bernoulli beam equation incorporating the curvature effect to obtain the post-buckled axial bending displacement for the multi-walled nanotubes and nanopeapods. We find that the interactions between molecules generate an inward force, which tends to resist any applied forces. While the inward force induced by the fullerenes to the inner wall of the nanotube vanishes as we increase the applied force, the inward force induced by the layers increases as the applied force increases. The main contribution of this paper is the incorporation of both van der Waals interactions and the curvature effect into prescribed beam theories to accurately measure the critical forces and the buckled displacements of multi-walled nanotubes and nanopeapods subject to a small external force. Our analysis is relevant to future nano devices, such as biological sensors and measuring devices for small forces arising from electrical charges or Casimir forces. Refereed/Peer-reviewed
- Published
- 2011
197. Adsorption of polycyclic aromatic hydrocarbons on graphite surfaces
- Author
-
Ngamta Thamwattana, James M. Hill, Thien Tran-Duc, Barry J. Cox, Tran-Duc, Thien, Thamwattana, Ngamta, Cox, Barry, and Hill, James M
- Subjects
General Computer Science ,Ab initio ,General Physics and Astronomy ,General Chemistry ,Interaction energy ,Combustion ,medicine.disease_cause ,Coronene ,Soot ,Computational Mathematics ,chemistry.chemical_compound ,Adsorption ,chemistry ,Chemical engineering ,Mechanics of Materials ,Environmental chemistry ,medicine ,oronene ,graphite sheets ,Lennard-Jones potential ,polycylcic aromatic hydrocarbons ,Van der Waals interaction ,Particle ,General Materials Science ,Graphite - Abstract
Polycyclic aromatic hydrocarbons (PAHs) are emitted into the atmosphere as byproducts from combustion. Once emitted into the atmosphere, PAHs either can exist in the gas phase or they can be adsorbed onto particle surfaces, such as soot and charcoal. PAHs are one of the most widespread pollutants and are known carcinogens, mutagens and teratologies for humans. Unfortunately, they are easily inhaled when absorbed on the surfaces of airborne soot particles produced by the incomplete combustion of carbonaceous fuels. Studying the mechanism of adsorption of PAHs onto soot surfaces is therefore an important problem. In this work, we chose coronene (C24H12) to model the interaction between a typical PAH and agraphite surface. We comment that using conventional computational methods, such as full ab initio, isusually not feasible owing to the large molecules involved. Accordingly, we adopt an applied mathematical modelling approach and we therefore exploit the continuous atomistic approximation together withthe Lennard–Jones potential in order to investigate this problem. The major result of this study is an analytical expression for the interaction energy which we then use to describe the mechanism of adsorptionof a coronene molecule on a graphite surface. Refereed/Peer-reviewed
- Published
- 2010
198. Modelling the interaction in a benzene dimer
- Author
-
Thien Tran-Duc, Barry J. Cox, Ngamta Thamwattana, James M. Hill, Tran-Duc, Thien, Thamwattana, Ngamta, Cox, Barry, and Hill, James M
- Subjects
aromatic rings ,Lennard-Jones potential ,Van der Waals interaction ,Dimer ,Aromaticity ,Condensed Matter Physics ,Ring (chemistry) ,Potential energy ,chemistry.chemical_compound ,symbols.namesake ,chemistry ,Computational chemistry ,symbols ,Physics::Atomic and Molecular Clusters ,Molecule ,van der Waals force ,Physics::Chemical Physics ,Benzene ,benzene dimer - Abstract
The interaction between aromatic rings is a fundamental problem in material science and biochemistry. These interactions are generally found to stabilise protein molecules and the double helical structure of DNA, and they also play an important role in the recognition processes in biological and non-biological systems. However, the complexity and variety in the structures and components of aromatic compounds are major obstacles to investigating their interactions. In this study, the simplest case of aromatic interactions, which is the interaction between two benzene rings, is modelled using a continuous approximation. Assuming a constant atomic surface density and modelling the structure of a benzene molecule as a combination of two rings, namely an inner carbon ring and an outer hydrogen ring, the van der Waals interaction between any two benzene rings can be obtained as the sum of four interactions. The major result obtained here is an analytical expression for the potential energy which can then be used to predict equilibrium configurations for two interacting benzene molecules. Moreover, we find that at sufficiently large distances between the two benzene molecules, the orientational angle phi at which the interaction energy is a minimum can be approximated by the arctan of the ratio of two separation distances in two mutually perpendicular directions. Refereed/Peer-reviewed
- Published
- 2010
199. General model for molecular interactions in a benzene dimer
- Author
-
Tran-Duc, Thien, Thamwattana, Ngamta, Cox, Barry, and Hill, James
- Subjects
Aromatic rings ,benzene dimer ,Lennard-Jones potential ,molecular interaction - Abstract
Refereed/Peer-reviewed
- Published
- 2010
200. Two minimisation approximations for joining carbon nanostructures
- Author
-
Baowan, Duangkamon, Cox, Barry, Thamwattana, Ngamta, Hill, Jim, and IUTAM Symposium on Modelling Nanomaterials and Nanosystems Aalborg 19 July 2008
- Published
- 2009
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.