514 results on '"Shobha D"'
Search Results
152. Characterisation of rotavirus strains identified in adolescents and adults with acute gastroenteritis highlights circulation of non-typeable strains: 2008-2012
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Vaishali S. Tatte, Shobha D. Chitambar, and Nital S. Chothe
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Adult ,Rotavirus ,Lineage (genetic) ,Adolescent ,Genes, Viral ,Genotype ,NSP4 ,viruses ,India ,Biology ,medicine.disease_cause ,Genome ,Genetic diversity ,Rotavirus Infections ,genotypes ,Immunology and Microbiology(all) ,Multiplex polymerase chain reaction ,medicine ,Humans ,Child ,Gene ,Phylogeny ,Molecular Epidemiology ,General Veterinary ,General Immunology and Microbiology ,Phylogenetic tree ,Reverse Transcriptase Polymerase Chain Reaction ,Public Health, Environmental and Occupational Health ,virus diseases ,Sequence Analysis, DNA ,veterinary(all) ,Virology ,Gastroenteritis ,VP7 ,Reverse transcription polymerase chain reaction ,Infectious Diseases ,VP4 ,VP6 ,Molecular Medicine - Abstract
BackgroundGroup-A Rotavirus (RV) is the main causative agent of acute gastroenteritis in children
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- 2014
153. Evaluation of marginal alveolar bone height for early detection of periodontal disease in pediatric population: clinical and radiographic study
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Guneet Gogia, Varun Sardana, Anand L Shigli, Aswini Y Balappanavar, K R Indushekar, and Shobha D Deshpande
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Male ,Cuspid ,Gingival and periodontal pocket ,Cephalometry ,Tooth eruption ,Bleeding on probing ,Dentistry ,Dental Caries ,Tooth Exfoliation ,Tooth Cervix ,Tooth Eruption ,Reference Values ,medicine ,Alveolar Process ,Humans ,Periodontal Pocket ,Dental Calculus ,Single-Blind Method ,Tooth, Deciduous ,Child ,Dental Restoration, Permanent ,General Dentistry ,Radiography, Bitewing ,Dental alveolus ,Periodontal Diseases ,Permanent teeth ,Crowns ,business.industry ,Alveolar process ,Dental Plaque Index ,Molar ,Cementoenamel junction ,medicine.anatomical_structure ,Cross-Sectional Studies ,Early Diagnosis ,Female ,medicine.symptom ,Periodontal Index ,business - Abstract
Objectives To establish a normal range for the radiographic distance between cementoenamel junction and alveolar bone crest and the factors affecting distances for the early assessment of periodontal disease in Dravidian pediatric population. Methods Fifty children aged 6 to 8 years were selected based on inclusion and exclusion criteria. Clinical and radiographic examination was performed. All the surfaces were examined starting from the distal surface of primary canine to the mesial surface of first permanent molar. The various risk factors like plaque, calculus, proximal caries, restoration and bleeding on probing were recorded. A pair of bitewing radiographs was taken for each child. Bitewing radiographs were traced and analyzed. Results It showed that CEJ-ABC distance in primary teeth is about 1 ± 0.5 mm. In the permanent teeth, it was found to be 0.6 ± 0.5 mm in 6 to 8 years age group. CEJ-ABC distance was also affected by different variables like physiologic (eruption and exfoliation) and pathologic factors (plaque, calculus, dental caries, restorations, stainless steel crowns, bleeding on probing and probing depth). Conclusion CEJ-ABC distances greater than 2.5 mm should be considered under recall and follow-up. Children and adolescents susceptible to periodontal disease should be identified by radiographic means as early as possible in order to prevent the advance of an otherwise possibly destructive disease. The concept of oral health examination and treatment must include examination of the periodontal status of the patient. How to cite this article Sardana V, Balappanavar AY, Deshpande S, Shigli A, Indushekar KR, Gogia G. Evaluation of Marginal Alveolar Bone Height for Early Detection of Periodontal Disease in Pediatric Population: Clinical and Radiographic Study. J Contemp Dent Pract 2014;15(1):37-45.
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- 2014
154. Molecular surveillance of non-polio enterovirus infections in patients with acute gastroenteritis in Western India: 2004-2009
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Pooja R, Patil, Shobha D, Chitambar, and V, Gopalkrishna
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Male ,Genotype ,Genotyping Techniques ,India ,Infant ,Gastroenteritis ,Case-Control Studies ,Child, Preschool ,Epidemiological Monitoring ,Enterovirus Infections ,Prevalence ,Humans ,Female ,Child ,Enterovirus - Abstract
Acute gastroenteritis is a major cause of childhood morbidity and mortality worldwide. Rotavirus (RV) and Norovirus (NoV) are the leading cause of the disease. Despite the use of improved diagnostic methods a significant proportion of gastroenteritis cases remained undiagnosed. Though nonpolio enteroviruses (NPEVs) have been reported frequently in children with acute gastroenteritis, their etiologic role has not been established. To investigate the epidemiology of NPEVs in gastroenteritis cases which remained negative for leading causative agents, 955 RV and NoV negative stool specimens from children hospitalized for acute gastroenteritis were included in the study. A case control study was conducted which includes stool specimens from 450 children with gastroenteritis and 162 asymptomatic control subjects to determine the association of NPEVs with the disease. NPEV detection and typing was carried out by RT-PCR and sequencing. Presence of RV, NoV, Adenovirus, and Astrovirus was confirmed by ELISA or PCR/RT-PCR. Overall 14% NPEV prevalence was noted. The percentage of children with NPEV infection differed significantly between gastroenteritis and non-gastroenteritis patients (13.7% vs. 4.9%). NPEV was more prevalent among patients with gastroenteritis of undetectable etiology as compared to those detected positive for other viruses (17.9% vs. 7%) (P 0.01). Genotyping of NPEV identified predominance of EV-B species (56.5%) followed by EV-C (16.7%), EV-A (13.8%) species and mixed NPEV infections (13%). These data support the association of NPEVs with acute gastroenteritis and highlights the clinical and epidemiological features of NPEV infections in patients with acute gastroenteritis from western India.
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- 2014
155. Changing epidemiology of hepatitis A and hepatitis E in urban and rural India (1982-98)
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Shobha D. Chitambar, Mandeep S. Chadha, Vidya A. Arankalle, L. P. Chobe, Atul M. Walimbe, and S. S. Gandhe
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Adult ,Male ,Rural Population ,medicine.medical_specialty ,Adolescent ,Urban Population ,viruses ,Population ,India ,medicine.disease_cause ,Virology ,Epidemiology ,Hepatitis E virus ,Prevalence ,medicine ,Humans ,Hepatitis Antibodies ,Child ,education ,Socioeconomic status ,Hepatitis ,Hepatitis B virus ,education.field_of_study ,Hepatology ,business.industry ,virus diseases ,Hepatitis A ,Odds ratio ,Middle Aged ,medicine.disease ,Hepatitis E ,Infectious Diseases ,Child, Preschool ,Immunology ,Female ,business ,Hepatitis A Virus, Human ,Demography - Abstract
The epidemiology of hepatitis A virus (HAV) and hepatitis B virus (HEV) was assessed among age-stratified urban high socioeconomic lower middle socioeconomic status and rural populations from western India in 1998. When compared with previous surveys a clear shift from high to intermediate endemicity of HAV was evident only for higher socioeconomic population (1982-98) raising the possibility of outbreaks of hepatitis A in this category. A decrease in anti-HAV positivity was noted in rural children aged 6-10 years. Lower circulation of HEV was noted among
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- 2001
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156. A Convenient Method for the Synthesis of Benzophenones Using Silica Gel Supported Chromium Trioxide Reagent
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Bhushan M. Khadilkar and Shobha D. Borkar
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inorganic chemicals ,Chromium trioxide ,chemistry.chemical_compound ,chemistry ,Silica gel ,Reagent ,Organic Chemistry ,Oxidizing agent ,Inorganic chemistry ,Mortar - Abstract
We report chromium trioxide supported on silica gel to be a very efficient and mild oxidizing agent for benzylic oxidations of various diarylmethanes. We prepared the reagent just by co-grinding silica gel with chromium trioxide in a mortar. The reagent showed excellent shelf life.
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- 1999
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157. Molecular characterization of emerging G9P[4] rotavirus strains possessing a rare E6 NSP4 or T1 NSP3 genotype on a genogroup-2 backbone using a refined classification framework
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Pradhan, Gauri N., primary, Walimbe, Atul M., additional, and Chitambar, Shobha D., additional
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- 2016
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158. Clinical Profile and Diagnostic Parameters of Dengue Viral Infection among Children
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Biradar, Asmabegaum M., primary, Nadagir, Shobha D., additional, Shankar, Mahesh Kumar, additional, and Naik, Trupti B., additional
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- 2016
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159. Prevalence and Antibiotic Susceptibility Pattern of Multi-drug Resistant Klebsiella pneumoniae in Pus samples from Surgical Ward Patients in a Tertiary Care Hospital in South India
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Iqbal Lodhi, Md. Mudassar, primary and Nadagir, Shobha D., additional
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- 2016
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160. Genomic characterization of coxsackievirus type B3 strains associated with acute flaccid paralysis in south-western India
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Laxmivandana, Rongala, primary, Cherian, Sarah S., additional, Yergolkar, Prasanna, additional, and Chitambar, Shobha D., additional
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- 2016
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161. ARIA in patients treated with lecanemab (BAN2401) in a phase 2 study in early Alzheimer's disease
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Lawrence S. Honig, Jerome Barakos, Shobha Dhadda, Michio Kanekiyo, Larisa Reyderman, Michael Irizarry, Lynn D. Kramer, Chad J. Swanson, and Marwan Sabbagh
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Alzheimer's disease ,anti‐amyloid ,ARIA ,exposure response modeling ,lecanemab ,Neurology. Diseases of the nervous system ,RC346-429 ,Geriatrics ,RC952-954.6 - Abstract
Abstract INTRODUCTION Lecanemab is a humanized immunoglobulin G1 (IgG1) monoclonal antibody that preferentially targets soluble aggregated Aβ species (protofibrils) with activity at amyloid plaques. Amyloid‐related imaging abnormalities (ARIA) profiles appear to differ for various anti‐amyloid antibodies. Here, we present ARIA data from a large phase 2 lecanemab trial (Study 201) in early Alzheimer's disease. METHODS Study 201 trial was double‐blind, placebo‐controlled (core) with an open‐label extension (OLE). Observed ARIA events were summarized and modeled via Kaplan‐Meier graphs. An exposure response model was developed. RESULTS In the phase 2 core and OLE, there was a low incidence of ARIA‐E (
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- 2023
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162. Environmentally clean synthesis of diphenylmethanes using silica gel-supported ZnCl2 and FeCl3
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Bhushan M. Khadilkar and Shobha D. Borkar
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Renewable Energy, Sustainability and the Environment ,Chemistry ,Silica gel ,General Chemical Engineering ,Organic Chemistry ,Inorganic chemistry ,Diphenylmethane ,Pollution ,Catalysis ,Inorganic Chemistry ,chemistry.chemical_compound ,Fuel Technology ,Chemical engineering ,Anhydrous ,Cubic zirconia ,Lewis acids and bases ,Mortar ,Waste Management and Disposal ,Biotechnology - Abstract
Lewis acids such as FeCl 3 and ZnCl 2 were supported on silica gel, alumina, zirconia and titania by co-grinding with anhydrous Lewis acids in appropriate proportions in an agate mortar. The catalysts have good shelf life and reusability. Synthesis of diphenylmethanes with these catalysts was studied; silica gel was the best support.
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- 1998
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163. Genomic characterization of coxsackievirus type A24 strains associated with acute flaccid paralysis and rarely identified Hopkins syndrome
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Shobha D. Chitambar, Rongala Laxmivandana, Mannapur Rajeshwari, and Prasanna N. Yergolkar
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Acute flaccid paralysis ,medicine.medical_specialty ,Molecular Sequence Data ,Coxsackievirus Infections ,Genome, Viral ,Coxsackievirus ,Genome ,Evolution, Molecular ,Medical microbiology ,Virology ,Hopkins syndrome ,medicine ,Genome sequence analysis ,Humans ,Paralysis ,Phylogeny ,Genetics ,Phylogenetic tree ,biology ,Nucleic acid sequence ,General Medicine ,Genomics ,biology.organism_classification ,medicine.disease ,Enterovirus C, Human - Abstract
The full-length genome sequence analysis of four coxsackievirus A24 (CV-A24) strains, detected in three paralytic and one post-asthmatic paralytic (Hopkins syndrome) cases, is reported here for the first time. A phylogenetic tree constructed on the basis of entire genomes displayed topology similar to that of the full-VP1 tree, classifying the study strains in genogroup CV-A24vGIV along with their temporal counterparts in strains from non-paralytic cases. The strains of the study formed a single genetic cluster C4 within CV-A24vGIV and showed 3.5–19.4 % nucleotide sequence divergence, with 2-4 novel nucleotide mutations in the 5′NCR and 3-8 unique amino acid substitutions in the polyprotein, with respect to the CV-A24 strains associated with non-paralytic cases. Among the nucleotide mutations, A299U was identified in the 5′NCRs of all of the study strains. CV-A24v strains of the same genogroup with few genomic variations but different disease manifestations need to be explored to investigate the molecular basis of evolution of neurovirulence.
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- 2014
164. Use of rabbit antibodies raised against Norovirus GII.4 virus-like particles for diagnosis of Norovirus infection
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Shobha D. Chitambar, Kavita S. Lole, and Ruta Kulkarni
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Norovirus GII ,biology ,lcsh:R ,lcsh:Medicine ,General Medicine ,medicine.disease_cause ,Virology ,General Biochemistry, Genetics and Molecular Biology ,Virus ,Genotype ,biology.protein ,Norovirus ,medicine ,Antibody ,Viral immunology - Published
- 2017
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165. Characterization of the non-polio enterovirus infections associated with acute flaccid paralysis in South-Western India
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Prasanna N. Yergolkar, Varanasi Gopalkrishna, Rongala Laxmivandana, and Shobha D. Chitambar
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Male ,Viral Diseases ,Epidemiology ,lcsh:Medicine ,medicine.disease_cause ,Feces ,Mice ,Genotype ,Paralysis ,Prevalence ,Child ,lcsh:Science ,Phylogeny ,Enterovirus ,Molecular Epidemiology ,Multidisciplinary ,Poliomyelitis ,Infectious Diseases ,Child, Preschool ,Acute Disease ,Medicine ,Female ,Seasons ,medicine.symptom ,Research Article ,Acute flaccid paralysis ,Adolescent ,Infectious Disease Control ,India ,Biology ,Asymptomatic ,Microbiology ,Infectious Disease Epidemiology ,Cell Line ,Viral Proteins ,Virology ,medicine ,Enterovirus Infections ,Animals ,Humans ,Genotyping ,lcsh:R ,Infant ,Sequence Analysis, DNA ,medicine.disease ,Enterovirus Infection ,lcsh:Q - Abstract
Non-polio enteroviruses (NPEVs) have been reported frequently in association with acute flaccid paralysis (AFP) cases during Polio Surveillance Programs (PSPs) worldwide. However, there is limited understanding on the attributes of their infections. This study reports characteristics of NPEVs isolated from AFP cases, investigated during PSPs held in 2009–2010, in Karnataka and Kerala states of south-western India having varied climatic conditions. NPEV cell culture isolates derived from stool specimens that were collected from 422 of 2186 AFP cases (
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- 2013
166. Diversity in the Enteric Viruses Detected in Outbreaks of Gastroenteritis from Mumbai, Western India
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Vaishali S. Tatte, Preeti Chhabra, Sashikant Pawar, Ritu Arora, Rajendra Kolhapure, Sujata S. Ranshing, Sulbha Akarte, Ganesh S. Dhale, Anismrita Lahon, Varanasi Gopalkrishna, Harsha Verma, Jagannath Kulkarni, Renu Bhardwaj, Shobha D. Chitambar, Pooja R. Patil, and Sanjay S. Tikute
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Serotype ,Adult ,Adolescent ,Health, Toxicology and Mutagenesis ,viruses ,Aichivirus ,India ,norovirus ,lcsh:Medicine ,medicine.disease_cause ,Virus ,Article ,Astrovirus ,Disease Outbreaks ,astrovirus ,Water Supply ,Rotavirus ,medicine ,Humans ,Water Pollutants ,Child ,Genotyping ,Phylogeny ,adenovirus ,enterovirus ,rotavirus ,gastroenteritis outbreak ,biology ,lcsh:R ,Public Health, Environmental and Occupational Health ,Outbreak ,virus diseases ,Sequence Analysis, DNA ,biology.organism_classification ,Virology ,Gastroenteritis ,Virus Diseases ,DNA, Viral ,Viruses ,Norovirus ,Enterovirus - Abstract
Faecal specimens collected from two outbreaks of acute gastroenteritis that occurred in southern Mumbai, India in March and October, 2006 were tested for seven different enteric viruses. Among the 218 specimens tested, 95 (43.6%) were positive, 73 (76.8%) for a single virus and 22 (23.2%) for multiple viruses. Single viral infections in both, March and October showed predominance of enterovirus (EV, 33.3% and 40%) and rotavirus A (RVA, 33.3% and 25%). The other viruses detected in these months were norovirus (NoV, 12.1% and 10%), rotavirus B (RVB, 12.1% and 10%), enteric adenovirus (AdV, 6.1% and 7.5%), Aichivirus (AiV, 3% and 7.5%) and human astrovirus (HAstV, 3% and 0%). Mixed viral infections were largely represented by two viruses (84.6% and 88.9%), a small proportion showed presence of three (7.7% and 11%) and four (7.7% and 0%) viruses in the two outbreaks. Genotyping of the viruses revealed predominance of RVA G2P[4], RVB G2 (Indian Bangladeshi lineage), NoV GII.4, AdV-40, HAstV-8 and AiV B types. VP1/2A junction region based genotyping showed presence of 11 different serotypes of EVs. Although no virus was detected in the tested water samples, examination of both water and sewage pipelines in gastroenteritis affected localities indicated leakages and possibility of contamination of drinking water with sewage water. Coexistence of multiple enteric viruses during the two outbreaks of gastroenteritis emphasizes the need to expand such investigations to other parts of India.
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- 2012
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167. Circulation of Aichi virus genotype B strains in children with acute gastroenteritis in India
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Varanasi Gopalkrishna, Harsha Verma, and Shobha D. Chitambar
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Pathology ,medicine.medical_specialty ,Kobuvirus ,Epidemiology ,India ,Disease ,Disease Outbreaks ,Feces ,Genotype ,Medicine ,Humans ,Child ,Phylogeny ,Retrospective Studies ,biology ,business.industry ,virus diseases ,Outbreak ,Infant ,biology.organism_classification ,Virology ,Gastroenteritis ,Hospitalization ,Infectious Diseases ,Child, Preschool ,Acute Disease ,Etiology ,RNA, Viral ,business ,Aichi virus - Abstract
SUMMARYAcute gastroenteritis (AG) is considered as one of the major health problems affecting humans of all ages. A number of viruses have been recognized as important causes of this disease. Recently, Aichi virus has been shown to play an aetiological role in sporadic infections and outbreaks of AG. A study on surveillance of enteric viruses was conducted during 2004–2008 in three cities in Maharashtra state, western India. A total of 1240 stool specimens from children aged ⩽8 years hospitalized for AG were screened for the presence of Aichi virus by RT–PCR of the 3C–3D junction region followed by sequencing for the identification of genotype. Aichi virus was detected at a prevalence of 1·1% in the
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- 2011
168. Seroprevalence of antibodies against GII.4 norovirus among children in Pune, India
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Kulkarni, Ruta, primary, Lole, Kavita, additional, and Chitambar, Shobha D., additional
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- 2016
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169. Prevalence of Beta-Hemolytic Streptococci Groups A, C, and G in Patients with Acute Pharyngitis
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Naik, Trupti B, additional, Nadagir, Shobha D, additional, and Biradar, Asmabegaum, additional
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- 2016
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170. Sequence analysis of VP4 genes of wild type and culture adapted human rotavirus G1P[8] strains
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Ritu Arora, Ganesh S. Dhale, Shobha D. Chitambar, and Pooja R. Patil
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Rotavirus ,Genotype ,Sequence analysis ,viruses ,Sequence Homology ,Biology ,medicine.disease_cause ,Cell Line ,Evolution, Molecular ,G1P[8] ,medicine ,Animals ,Humans ,Gene ,Phylogeny ,Cytopathic effect ,Genetics ,chemistry.chemical_classification ,Medicine(all) ,Immunogenicity ,Wild type ,virus diseases ,General Medicine ,Virology ,Macaca mulatta ,Amino acid ,chemistry ,Amino Acid Substitution ,Cell culture ,Capsid Proteins ,VP4 gene ,Hydrophobic and Hydrophilic Interactions ,Sequence Analysis - Abstract
Objective To conduct a comparative analysis of the VP4 gene sequences of Indian wild type (06361, 0613158, 061060 and 0715880) and cell culture adapted (06361-CA, 0613158-CA, 061060-CA and 0715880-CA) G1P[8] rotavirus strains. Methods Full-length VP4 genes of each of the four wild type G1P[8] rotavirus strains and their cell culture adapted counterparts displaying consistent cytopathic effect were subjected to RT-PCR amplification and nucleotide sequencing. Results All four cell culture adapted G1P[8] rotavirus strains showed nucleotide and amino acid substitutions in the VP4 gene as compared to their wild type strains. The number of substitutions however, varied from 1-64 and 1-13 respectively. The substitutions were distributed in both VP5* and VP8* subunits of VP4 gene respectively of permeabilization and hemagglutinating activity. The presence of unique amino acid substitutions was identified in two of the four wild type (V377G, S387N in 061060 and I644L in 0715880) and all four cell culture adapted (A46V in 0613158-CA, T60R in 06361-CA, L237V, G389V and Q480H in 061060-CA and S615G and T625P in 0715880-CA) strains for the first time in the VP4 gene of P[8] specificity. Amino acid substitutions generated increase in the hydrophilicity in the cell culture adapted rotavirus strains as compared to their corresponding wild type strains. Conclusions Amino acid substitutions detected in the VP4 genes of G1P[8] rotavirus strains from this study together with those from other studies highlight occurrence of only strain and/or host specific substitutions during cell culture adaptation. Further evaluation of such substitutions for their role in attenuation, immunogenicity and conformation is needed for the development of newer rotavirus vaccines.
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- 2010
171. ChemInform Abstract: Silica Gel Supported Ferric Nitrate: A Convenient Oxidizing Reagent
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Bhushan M. Khadilkar and Shobha D. Borkar
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chemistry.chemical_compound ,chemistry ,Nitrate ,Silica gel ,Reagent ,Oxidizing agent ,medicine ,Ferric ,General Medicine ,Selectivity ,medicine.drug ,Nuclear chemistry - Abstract
A silica gel supported ferric nitrate was prepared by co-grinding Fe(NO3)3.9H2O with silica gel in appropriate amounts. The reagent was used in equimolar quantity to oxidize various alcohols to corresponding aldehydes with complete selectivity. Similarly it successfully oxidizes various Hantzsch-type 1,4-dihydropyridines.
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- 2010
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172. ChemInform Abstract: A Convenient Method for the Synthesis of Benzophenones Using Silica Gel Supported Chromium Trioxide Reagent
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Bhushan M. Khadilkar and Shobha D. Borkar
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inorganic chemicals ,chemistry.chemical_compound ,Chromium trioxide ,chemistry ,Silica gel ,Reagent ,Oxidizing agent ,General Medicine ,Mortar ,Nuclear chemistry ,Diphenylmethane derivatives - Abstract
We report chromium trioxide supported on silica gel to be a very efficient and mild oxidizing agent for benzylic oxidations of various diarylmethanes. We prepared the reagent just by co-grinding silica gel with chromium trioxide in a mortar. The reagent showed excellent shelf life.
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- 2010
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173. Complete genome characterization of Genogroup II norovirus strains from India: Evidence of recombination in ORF2/3 overlap
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Atul M. Walimbe, Preeti Chhabra, and Shobha D. Chitambar
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Microbiology (medical) ,viruses ,Population ,Molecular Sequence Data ,India ,Genome, Viral ,Biology ,Microbiology ,Genome ,Evolution, Molecular ,Open Reading Frames ,Genetics ,Humans ,Amino Acid Sequence ,ORFS ,education ,Molecular Biology ,Ecology, Evolution, Behavior and Systematics ,Conserved Sequence ,Phylogeny ,Caliciviridae Infections ,education.field_of_study ,Phylogenetic tree ,Molecular epidemiology ,Strain (biology) ,Norovirus ,virus diseases ,biology.organism_classification ,Caliciviridae ,Gastroenteritis ,Infectious Diseases ,Genetic marker ,Reassortant Viruses - Abstract
Noroviruses (NoVs) are considered as important causative agents of non-bacterial acute gastroenteritis, worldwide. The data on NoV genomes, their diversity and evolution from Indian subcontinent are not available to date. The present study describes the characterization of full-length genomes of Indian NoV strains for the first time to establish their phylogenetic and evolutionary relationship with those circulating worldwide. Amplification of full-length genomes of three NoV strains (PC15, PC51 and PC52) was carried out using nine overlapping sets of forward and reverse primers. Full-length genomes of all of the three strains were characterized by phylogenetic, SimPlot, selection pressure and hydrophilicity analyses. The strain, PC15 was placed in the GII.4-Hunter subcluster. An intragenotype recombination event between ORFs 2 (new GII.4 variant) and 3 (Den Haag subcluster) of the strain, PC51 was detected for the first time in this study. The strain, PC52 showed the presence of commonly detected intergenotype recombination, GII.b/GII.3. A 16 amino-acid signature code (TDVVYYAGASQPRDDI) was identified in the ORF2 of recombinant GII.3 specificity strains, which may serve as a genetic marker for differentiation of these strains from non-recombinant GII.3 strains. The amino-acid substitutions in the ORF2 of PC51 and PC52 strains in comparison to the reference strains (Toyama1 and TV24) resulted in an increase in the hydrophilicity suggested alterations in the antigenic regions of Indian NoV strains. A unique pattern of amino-acid substitutions was observed within seven subclusters of GII.4 at 19 sites (including 13 sites under positive selection pressure) spanning entire ORF2. The study indicates adaptation of NoVs in the environment to escape the host immune response and to persist in the population. It also provides in-depth analyses of NoV genomes from India and determines the extent of conserved and variable features of the Indian NoV strains.
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- 2010
174. Emerging OP354-Like P[8] Rotaviruses Have Rapidly Dispersed from Asia to Other Continents
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Zeller, Mark, primary, Heylen, Elisabeth, additional, Damanka, Susan, additional, Pietsch, Corinna, additional, Donato, Celeste, additional, Tamura, Tsutomu, additional, Kulkarni, Ruta, additional, Arora, Ritu, additional, Cunliffe, Nigel, additional, Maunula, Leena, additional, Potgieter, Christiaan, additional, Tamim, Sana, additional, Coster, Sarah De, additional, Zhirakovskaya, Elena, additional, Bdour, Salwa, additional, O’Shea, Helen, additional, Kirkwood, Carl D., additional, Seheri, Mapaseka, additional, Nyaga, Martin Monene, additional, Mphahlele, Jeffrey, additional, Chitambar, Shobha D., additional, Dagan, Ron, additional, Armah, George, additional, Tikunova, Nina, additional, Van Ranst, Marc, additional, and Matthijnssens, Jelle, additional
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- 2015
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175. Sequence and phylogenetic analysis of the VP6 and NSP4 genes of human rotavirus strains: evidence of discordance in their genetic linkage
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Shobha D. Chitambar, Komal N. Rawal, and Vaishali S. Tatte
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Microbiology (medical) ,Adult ,Rotavirus ,Adolescent ,Genotype ,Genetic Linkage ,viruses ,Reoviridae ,Biology ,Viral Nonstructural Proteins ,medicine.disease_cause ,Microbiology ,Genetic linkage ,Phylogenetics ,Genetics ,medicine ,Humans ,Molecular Biology ,Gene ,Antigens, Viral ,Ecology, Evolution, Behavior and Systematics ,Phylogeny ,Glycoproteins ,Toxins, Biological ,Molecular epidemiology ,Phylogenetic tree ,virus diseases ,biology.organism_classification ,Virology ,Gastroenteritis ,Infectious Diseases ,Capsid Proteins - Abstract
NSP4 and VP6 genes of a total of 118 rotavirus strains detected in adolescent and adult cases of acute gastroenteritis (AGE) in 1993-1996 and 2004-2007 were characterized to determine their diversity and genetic linkage. Eighty-two percent and 89% of the strains showed amplification of NSP4 and VP6 genes respectively in RT-PCR. Sequencing and phylogenetic analysis of the VP6 genes showed distribution of genogroups in the lineages I-1 (1.4%), I-2 (50.7%) and II-4 (47.9%) in the 1990s and I-2 (73.5%) and II-4 (26.5%) in 2000s, indicating diversity in genogroups at both time points. Amino acid divergence within the genogroup II strains from 1990s and genogroup I strains from the 2000s was noteworthy (4.7-6.7%). Sequencing and phylogenetic analysis of the NSP4 genes showed almost equal distribution (45.0-55.0%) of genotypes A and B however, higher amino acid divergence within the genotype B strains (up to 9.3%) than in genotype A strains (up to 2.9%) at the two-time points. Nearly 70% of the strains showed NSP4-A-VP6-I or NSP4-B-VP6-II genetic linkage. The discordance in the linkage noted in 29.7% of the strains was predominated by NSP4-B and VP6-I combination and appeared strikingly high in the infections caused by unusual and mixed rotavirus strains. This is the first report to describe the phylogenetic analysis of rotavirus NSP4 and VP6 genes and their discordance in adolescent and adult cases with AGE from India. The extensive diversity within the rotavirus genes and their relationship revealed by this study emphasizes the need for evaluation of the rotavirus vaccines being used currently.
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- 2010
176. Prevalence of Mycoplasma pneumoniae among HIV infected children
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Shobha D. Nadagir, Tipperudra Anantappa Shepur, and Abdul Kaleem Bahadur
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Male ,Mycoplasma pneumoniae ,medicine.medical_specialty ,Population ,India ,HIV Infections ,medicine.disease_cause ,Acquired immunodeficiency syndrome (AIDS) ,Internal medicine ,Pneumonia, Mycoplasma ,medicine ,Prevalence ,Seroprevalence ,Humans ,Aspartate Aminotransferases ,Prospective Studies ,education ,Prospective cohort study ,Child ,Pneumonitis ,education.field_of_study ,medicine.diagnostic_test ,AIDS-Related Opportunistic Infections ,business.industry ,medicine.disease ,Pneumonia ,Child, Preschool ,Pediatrics, Perinatology and Child Health ,Immunology ,Female ,business ,Liver function tests - Abstract
To determine the seroprevalence of Mycoplasma pneumoniae infection among HIV infected children. Also, to correlate various hematological and radiological findings associated with M.pneumoniae infection. This prospective hospital based study enrolled a total of 90 HIV seropositive children presenting with acute pulmonary symptoms, admitted to Pediatric ward of Karnataka Institute of Medical Sciences Hospital, Hubli. Patients underwent a thorough physical and radiological examination. IgM ELISA was used to detect specific antibodies against M. pneumoniae. Complete hemogram, liver function tests and CD4 counts were performed for correlation. IgM antibodies specific to M.pneumoniae was detected in 29(32.2%) children. Basal pneumonitis and hilar lymphadenopathy were common radiological findings seen in 11(37.4%) and 7(23.8%) respectively. Typical unilateral interstitial infiltration was seen only in 5(17%) children. Majority 27(93%) of M.pneumoniae infected cases were found anemic. Elevated AST levels were observed in 17(58.6%) of cases. Majority 18 (62%) of children with M.pneumoniae infection were immunosuppressed and the mean CD4% amongst them was 13.9 ± 6.4%. The prevalence of M.pneumoniae infection among HIV seropositive children with respiratory tract infection in the present study is 32.2%. Early detection of M.pneumoniae infection and prompt initiation of therapy may halt further depletion of CD4 cells and rapid progression to AIDS in these patients.
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- 2010
177. Disease and economic burden of rotavirus diarrhoea in India
- Author
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Rashmi Arora, Beryl Primrose Gladstone, Shobha D. Chitambar, Sasirekha Ramani, S. S. Gandhe, Gagandeep Kang, Douglas H. Esposito, Jacqueline E. Tate, Umesh D. Parashar, Mohan Venkata Raghava, Rajiv Sarkar, and Thuppal V. Sowmyanarayanan
- Subjects
Diarrhea ,Pediatrics ,medicine.medical_specialty ,Outpatient Clinics, Hospital ,Psychological intervention ,Reoviridae ,India ,Disease ,medicine.disease_cause ,Rotavirus Infections ,Cost of Illness ,Environmental health ,Rotavirus ,Epidemiology ,Outpatient clinic ,Medicine ,Humans ,Disease burden ,General Veterinary ,General Immunology and Microbiology ,biology ,business.industry ,Public Health, Environmental and Occupational Health ,Rotavirus Vaccines ,Health Care Costs ,biology.organism_classification ,Hospitalization ,Infectious Diseases ,Child, Preschool ,Molecular Medicine ,medicine.symptom ,business - Abstract
We used published and unpublished studies and national statistics to estimate the number of deaths, hospitalizations, and outpatient visits due to rotavirus diarrhoea and the associated national economic burden of disease in India. Annually in India, rotavirus diarrhoea causes an estimated 122,000-153,000 deaths, 457,000-884,000 hospitalizations, and 2 million outpatient visits in children
- Published
- 2009
178. Multicenter, hospital-based surveillance of rotavirus disease and strains among indian children aged5 years
- Author
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Gagandeep, Kang, Rashmi, Arora, Shobha D, Chitambar, Jagdish, Deshpande, M D, Gupte, Madhuri, Kulkarni, Trilok N, Naik, Dipali, Mukherji, S, Venkatasubramaniam, Jon R, Gentsch, Roger I, Glass, Umesh D, Parashar, and Ng Brajachand, Singh
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Male ,Rotavirus ,medicine.medical_specialty ,Genotype ,viruses ,Prevalence ,Reoviridae ,India ,medicine.disease_cause ,Rotavirus Infections ,Internal medicine ,Epidemiology ,Immunology and Allergy ,Medicine ,Humans ,Feces ,biology ,business.industry ,Infant, Newborn ,virus diseases ,Infant ,biology.organism_classification ,Virology ,Gastroenteritis ,Vaccination ,Hospitalization ,Infectious Diseases ,Immunization ,El Niño ,Child, Preschool ,Acute Disease ,Female ,business - Abstract
BACKGROUND Current, nationally representative data on rotavirus disease burden and rotavirus strains in India are needed to understand the potential health benefits of rotavirus vaccination. METHODS The Indian Rotavirus Strain Surveillance Network was established with 4 laboratories and 10 hospitals in 7 different regions of India. At each hospital, children aged
- Published
- 2009
179. Molecular characterization of a rare G1P[19] rotavirus strain from India: evidence of reassortment between human and porcine rotavirus strains
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Ritu Arora, Preeti Chhabra, and Shobha D. Chitambar
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Microbiology (medical) ,Rotavirus ,Genes, Viral ,Swine ,viruses ,Reassortment ,Reoviridae ,India ,Biology ,medicine.disease_cause ,Microbiology ,Rotavirus Infections ,fluids and secretions ,Genotype ,medicine ,Animals ,Humans ,Gene ,Phylogeny ,Genetics ,Strain (biology) ,Structural gene ,virus diseases ,General Medicine ,Amplicon ,biology.organism_classification ,Virology ,Reassortant Viruses - Abstract
This study pertains to the characterization of a human rotavirus strain (NIV929893) with a rare specificity of G1P[19]. Three structural genes (VP4, VP6 and VP7) and one non-structural gene (NSP4) of strain NIV929893 were subjected to RT-PCR for amplification of entire coding regions. All of the amplicons were sequenced to carry out phylogenetic analysis. The complete amino acid sequences of the VP7 and VP4 gene products showed clustering of the VP7 gene with G1 strains of human origin and the VP4 gene with P[19] strains of porcine origin. The two viral proteins VP6 and NSP4, described previously as genetically linked proteins, were shown to be subgroup II and genotype B of human and porcine origins, respectively. The findings of this study provide evidence of reassortment between VP7/VP6 genes of humans and VP4/NSP4 genes of porcine species and an independent segregation of VP6 and NSP4 genes in a group A human rotavirus strain with G1P[19] specificity.
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- 2009
180. Molecular characterization of three novel intergenotype norovirus GII recombinant strains from western India
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Shobha D. Chitambar, Preeti Chhabra, and Atul M. Walimbe
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Cancer Research ,medicine.medical_specialty ,Genotype ,Sequence analysis ,viruses ,Molecular Sequence Data ,India ,Sequence Homology ,Biology ,medicine.disease_cause ,fluids and secretions ,Phylogenetics ,Virology ,Molecular genetics ,medicine ,Cluster Analysis ,Humans ,Phylogeny ,Caliciviridae Infections ,Genetics ,Recombination, Genetic ,Phylogenetic tree ,Reverse Transcriptase Polymerase Chain Reaction ,Norovirus ,virus diseases ,Sequence Analysis, DNA ,Amplicon ,Gastroenteritis ,Infectious Diseases ,Capsid ,RNA, Viral ,Capsid Proteins - Abstract
The phenomenon of recombination has been widely described among noroviruses (NoVs) in the past few years. In a NoV surveillance study conducted in western India, 3 novel and 3 known combinations of RNA-dependent RNA polymerase (RdRp) and capsid genes were identified in genogroup (G) II NoV strains. The present study pertains to the characterization of three novel intergenotype NoV GII recombinant strains. RT-PCRs were carried out for the amplification of nearly complete RdRp and complete capsid genes spanning ORF1/2 overlap of three strains followed by sequencing of the amplicons. The recombination event was confirmed by phylogenetic analysis using Bayesian MCMC approach, SimPlot analysis and Maximum chi(2) method. Three novel intergenotype (GII) recombinations of GII.b/GII.18, GII.1/GII.12 and GII.3/GII.13 specificities were identified respectively in the strains PC03, PC24 and PC25 for the first time. The breakpoint in the novel recombinants was placed in the vicinity of the 20 bp ORF1/2 overlap, a common hotspot known to exist in NoV recombinants. The capsid genes of all of the 3 recombinants were closely related to their counter parts in reference strains however, a high degree of variation emerged in the polymerase genes especially of PC24 and PC25 in comparison to the reference strains.
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- 2009
181. Genetic diversity of genotype G1 rotaviruses co-circulating in western India
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Shobha D. Chitambar, Ritu Arora, and Preeti Chhabra
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Diarrhea ,Rotavirus ,Cancer Research ,Genotype ,Molecular Sequence Data ,Mutation, Missense ,India ,Sequence Homology ,Biology ,medicine.disease_cause ,Rotavirus Infections ,Phylogenetics ,Virology ,medicine ,Cluster Analysis ,Humans ,Child ,Gene ,Antigens, Viral ,Phylogeny ,Genetics ,Genetic diversity ,Phylogenetic tree ,Indian population ,Genetic Variation ,Sequence Analysis, DNA ,Infectious Diseases ,Amino Acid Substitution ,Child, Preschool ,Capsid Proteins ,medicine.symptom - Abstract
The rotavirus (RV) G1 strains represent the common genotype that causes diarrhea in humans. The aim of this study was to determine the genetic lineages of G1 RV strains circulating in western India during two different time periods, 1991-1994 and 2006 by molecular characterization of VP7 genes. The phylogenetic analysis of VP7 genes showed clustering of G1 strains into lineages I (96.4%) and VIII (3.6%) in 1991-1994 and I (96.2%) and II (3.8%) in 2006. The sublineage IA was predominant (96.4%) in the years 1991-1994, however, was detected only in 44.4% of the strains in 2006 co-circulating with other sublineages IB (44.4%), IC (3.7%), IE (3.7%) and IIB (3.7%). The amino acid substitutions were noted in the previously identified signature codes of sublineages IB and IIB at positions 75 and 55, respectively. The differentiation marker (Q) described for sublineage IB at position 16 was replaced by I in all Indian strains clustered in sublineage IB. The study reports the characterization of G1 RV strains on the basis of distinct lineages and sublineages from India and emphasizes continuous monitoring on the diversity of G1 strains across the Indian population.
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- 2009
182. Epidemiological, clinical, and molecular features of norovirus infections in western India
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Shobha D. Chitambar, Ashish Bavdekar, Ramchandra K. Dhongade, Preeti Chhabra, and Vijay R. Kalrao
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medicine.medical_specialty ,Genotype ,viruses ,Molecular Sequence Data ,India ,medicine.disease_cause ,Severity of Illness Index ,Virus ,Feces ,fluids and secretions ,Age Distribution ,Virology ,Epidemiology ,medicine ,Humans ,Child ,Phylogeny ,Caliciviridae Infections ,Recombination, Genetic ,Molecular Epidemiology ,biology ,Phylogenetic tree ,Molecular epidemiology ,business.industry ,Reverse Transcriptase Polymerase Chain Reaction ,Norovirus ,virus diseases ,Infant ,Sequence Analysis, DNA ,biology.organism_classification ,Caliciviridae ,Gastroenteritis ,Infectious Diseases ,Child, Preschool ,Seasons ,business - Abstract
The study was conducted to investigate the molecular epidemiology of noroviruses (NoVs) from western India. A total of 830 fecal specimens were collected during July 2005–June 2007 from children, ≤7 years of age suffering from acute gastroenteritis in Pune, Nagpur, and Aurangabad cities. All the specimens were subjected to RT-PCR, sequencing and phylogenetic analysis for detection and characterization of Genogroup I (GI) and GII NoVs. NoV positivity varied between 6.3% and 12.6% in different cities with the predominance of GII (96.6%). NoV infections were very common in the patients ≤2 years of age. A majority (55%) of the patients suffered from severe disease, however, vomiting was not experienced in 35%. Coinfections with rotaviruses were found in 10% cases. Summer month seasonality supported NoV infections in western India. The phylogenetic analysis of partial RNA polymerase and VP1 (capsid) genes identified 2 GI (GI. 2 and GI.6) and 5 GII (GII.4, GII.6, GII.7, GII.8, and GII.14) genetic clusters with possible occurrence of “2007 new-variant” of GII.4. Six different combinations of RdRp and capsid genes (GII.b/GII.3, GII.b/GII.4, GII.d/GII.3, GII.b/GII.18, GII.1/GII.12 and GII.3/GII.13) were also identified. GII.4 (52%) prevailed in 2005–2006 while the predominance of probable recombinant NoV strains (58%) was noted in 2006–2007 with the contribution of GII.b/GII.3 at 79% level. GII.b/GII.18 type identified in 37% infections in 2005–2006 was completely replaced by GII.b/GII.3 type in 2006–2007. This is the first report that highlights the norovirus epidemiology and strain diversity demonstrating possible circulation of new variants in patients with acute gastroenteritis from western India. J. Med. Virol. 81:922–932, 2009. © 2009 Wiley-Liss, Inc.
- Published
- 2009
183. Pomalidomide augments fetal hemoglobin production without the myelosuppressive effects of hydroxyurea in transgenic sickle cell mice
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Meiler, Steffen E., Wade, Marlene, Kutlar, Ferdane, Yerigenahally, Shobha D., Xue, Yongjun, Moutouh-de Parseval, Laure A., Corral, Laura G., Swerdlow, Paul S., and Kutlar, Abdullah
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- 2011
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184. High frequency of rotavirus viremia in children with acute gastroenteritis: discordance of strains detected in stool and sera
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Ram K. Dhongde, Vaishali S. Tatte, Shobha D. Chitambar, and Vijay R. Kalrao
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Rotavirus ,Serum ,Genotype ,viruses ,Molecular Sequence Data ,Reoviridae ,Viremia ,Enzyme-Linked Immunosorbent Assay ,Biology ,medicine.disease_cause ,Antibodies, Viral ,Virus ,Rotavirus Infections ,Feces ,Viral Proteins ,fluids and secretions ,Virology ,medicine ,Humans ,Child ,Antigens, Viral ,Phylogeny ,Base Sequence ,Reverse Transcriptase Polymerase Chain Reaction ,virus diseases ,Sequence Analysis, DNA ,medicine.disease ,biology.organism_classification ,Gastroenteritis ,Diarrhea ,Infectious Diseases ,biology.protein ,Viral disease ,medicine.symptom ,Antibody ,Sequence Alignment - Abstract
Recently, rotavirus antigenemia and viremia have been identified in patients with acute gastroenteritis. This study examined rotavirus viremia in children hospitalized for acute gastroenteritis in order to establish its association with fecal shedding of rotavirus, infecting genotypes and antibody marker of acute infection. Thirty-one pairs of stool-serum specimens were collected from November 2004 to February 2005 together with clinical information. All paired specimens were screened for rotavirus RNA by RT-PCR using the VP6 gene primers. All stool and serum specimens were tested for rotavirus antigen and anti-rotavirus IgM respectively by ELISA. Sixteen of 31 stool-serum pairs showed the presence of rotavirus RNA. Nine stool and two serum specimens were positive only by RT-PCR. The total positivity in rotavirus RNA was significantly higher in both stools (80.6%) and sera (58.1%) than that of stool antigen (38.7%) and anti-rotavirus IgM (25.8%) (P < 0.01). All PCR positive paired specimens were typed for the VP7 (G) and VP4 (P) genes. Five of sixteen pairs could be typed for both genes. Three of the five pairs showed concordance (G2P[4]/G2P[4]) while two showed discordance (G12P[8]/G2P[4], G8P[4]/G2P[4]) in the genotypes detected in stool and serum specimens respectively. The study documents a high frequency of rotavirus viremia in patients with acute diarrhea. The discordance of rotavirus strains at the genotypic level in the serum and stool of individual patients with diarrhea suggests the susceptibility of extra-intestinal sites for rotavirus infection and the possibility of differential dissemination of rotavirus strains from the intestine.
- Published
- 2008
185. Identification and characterization of enteric adenoviruses in infants and children hospitalized for acute gastroenteritis
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Harsha, Verma, Shobha D, Chitambar, and Gopalkrishna, Varanasi
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Genotype ,Molecular Sequence Data ,Infant, Newborn ,India ,Infant ,Sequence Homology ,Sequence Analysis, DNA ,Polymerase Chain Reaction ,Adenoviridae ,Gastroenteritis ,Feces ,Child, Preschool ,DNA, Viral ,Prevalence ,Humans ,Phylogeny - Abstract
Enteric adenoviruses are important etiological agents associated with sporadic infections and outbreaks of acute gastroenteritis in infants and children. Fecal samples were collected from 439 hospitalized patients in the years 2005-2007 from Pune, Aurangabad, and Nagpur cities of western India to identify the most prevalent strains of enteric adenoviruses. The viruses were detected by PCR and characterized by sequencing and phylogenetic analysis. The prevalence of enteric adenoviruses in patients from Pune, Aurangabad and Nagpur was found to be 9% (10/111), 7% (7/100), and 7.5% (17/228), respectively. Sequence based analysis of the partial hexon and/or fiber genes showed the presence of adenovirus serotypes 40, 41, and 31 and variations at the subgenus and strain level. Phylogenetic analysis of the adenovirus strains indicated 98-100% homology with adenovirus 40 of the UK, 96-99% with adenovirus 41 of the USA and 94-100% with adenovirus 31 of Austria. The study indicates circulation of enteric adenovirus serotypes 40 and 41 with an unreported serotype 31 in sporadic cases of gastroenteritis. This is the first report from India on the association of enteric adenoviruses with acute gastroenteritis.
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- 2008
186. Systemic acquired resistance in canola is linked with pathogenesis-related gene expression and requires salicylic Acid
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Darwin W. Reed, Pierre R. Fobert, Patrick S. Covello, and Shobha D. Potlakayala
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Transgene ,fungi ,Virulence ,Plant Science ,Biology ,biology.organism_classification ,Microbiology ,chemistry.chemical_compound ,Leptosphaeria maculans ,chemistry ,Gene expression ,Pseudomonas syringae ,Agronomy and Crop Science ,Pathogen ,Systemic acquired resistance ,Salicylic acid - Abstract
Systemic acquired resistance (SAR) is an induced defense response that confers long-lasting protection against a broad range of microbial pathogens. Here we show that treatment of Brassica napus plants with the SAR-inducing chemical benzo-(1,2,3)-thiadiazole-7-carbothioic acid S-methyl ester (BTH) significantly enhanced resistance against virulent strains of the bacterial pathogen Pseudomonas syringae pv. maculicola and the fungal pathogen Leptosphaeria maculans. Localized preinoculation of plants with an avirulent strain of P. syringae pv. maculicola also enhanced resistance to these pathogens but was not as effective as BTH treatment. Single applications of either SAR-inducing pretreatment were effective against P. syringae pv. maculicola, even when given more than 3 weeks prior to the secondary challenge. The pretreatments also led to the accumulation of pathogenesis-related (PR) genes, including BnPR-1 and BnPR-2, with higher levels of transcripts observed in the BTH-treatment material. B. napus plants expressing a bacterial salicylate hydroxylase transgene (NahG) that metabolizes salicylic acid to catechol were substantially compromised in SAR and accumulated reduced levels of PR gene transcripts when compared with untransformed controls. Thus, SAR in B. napus displays many of the hallmarks of classical SAR including long lasting and broad host range resistance, association with PR gene activation, and a requirement for salicylic acid.
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- 2008
187. Significance of isolation and drug susceptibility testing of non-Candida albicans species causing oropharyngeal candidiasis in HIV patients
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Shobha D, Nadagir, Sneha K, Chunchanur, L H, Halesh, K, Yasmeen, M R, Chandrasekhar, and B S, Patil
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Antifungal Agents ,Ketoconazole ,AIDS-Related Opportunistic Infections ,Candidiasis, Oral ,Drug Resistance, Fungal ,Humans ,HIV Infections ,Microbial Sensitivity Tests ,Fluconazole ,Candida - Abstract
Oropharyngeal candidiasis (OPC) continues to be a common opportunistic infection in patients infected with Human Immunodeficiency Virus (HIV) and is predictive of increasing immunosuppression. Though Candida albicans remains the predominant isolate, a rise in the frequency of isolation of non-albicans Candida (NAC) species is being observed. The levels of virulence and the sensitivities to available antifungal drugs vary among these species. Of 340 HIV seropositive patients in this study, 132 (38.8%) had oral lesions suggestive of candidiasis. Samples were collected from the lesion using sterile cotton swabs. Isolation and speciation were done by standard techniques. Antifungal drug susceptibility testing was done by macro broth dilution. The total number of Candida isolates was 135, of which, 45 (33.3%) were NAC species and 90 were C.albicans (66.6%). Of the NAC species, C. dubliniensis was the predominant pathogen (22,48.9%). Antifungal susceptibility testing showed that 14 (31.1%) of the NAC species and 11 (12.2%) of C. albicans were resistant to fluconazole (MIC8 microg/ml). A very high MIC of32 microg/ml was noted among the NAC species resistant to fluconazole.
- Published
- 2008
188. A randomized, double-blind, phase 2b proof-of-concept clinical trial in early Alzheimer’s disease with lecanemab, an anti-Aβ protofibril antibody
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Chad J. Swanson, Yong Zhang, Shobha Dhadda, Jinping Wang, June Kaplow, Robert Y. K. Lai, Lars Lannfelt, Heather Bradley, Martin Rabe, Akihiko Koyama, Larisa Reyderman, Donald A. Berry, Scott Berry, Robert Gordon, Lynn D. Kramer, and Jeffrey L. Cummings
- Subjects
Alzheimer’s disease ,Amyloid ,Lecanemab ,BAN2401 ,Clinical trial ,Biomarker ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 ,Neurology. Diseases of the nervous system ,RC346-429 - Abstract
Abstract Background Lecanemab (BAN2401), an IgG1 monoclonal antibody, preferentially targets soluble aggregated amyloid beta (Aβ), with activity across oligomers, protofibrils, and insoluble fibrils. BAN2401-G000-201, a randomized double-blind clinical trial, utilized a Bayesian design with response-adaptive randomization to assess 3 doses across 2 regimens of lecanemab versus placebo in early Alzheimer’s disease, mild cognitive impairment due to Alzheimer’s disease (AD) and mild AD dementia. Methods BAN2401-G000-201 aimed to establish the effective dose 90% (ED90), defined as the simplest dose that achieves ≥90% of the maximum treatment effect. The primary endpoint was Bayesian analysis of 12-month clinical change on the Alzheimer’s Disease Composite Score (ADCOMS) for the ED90 dose, which required an 80% probability of ≥25% clinical reduction in decline versus placebo. Key secondary endpoints included 18-month Bayesian and frequentist analyses of brain amyloid reduction using positron emission tomography; clinical decline on ADCOMS, Clinical Dementia Rating-Sum-of-Boxes (CDR-SB), and Alzheimer’s Disease Assessment Scale-Cognitive Subscale (ADAS-Cog14); changes in CSF core biomarkers; and total hippocampal volume (HV) using volumetric magnetic resonance imaging. Results A total of 854 randomized subjects were treated (lecanemab, 609; placebo, 245). At 12 months, the 10-mg/kg biweekly ED90 dose showed a 64% probability to be better than placebo by 25% on ADCOMS, which missed the 80% threshold for the primary outcome. At 18 months, 10-mg/kg biweekly lecanemab reduced brain amyloid (−0.306 SUVr units) while showing a drug-placebo difference in favor of active treatment by 27% and 30% on ADCOMS, 56% and 47% on ADAS-Cog14, and 33% and 26% on CDR-SB versus placebo according to Bayesian and frequentist analyses, respectively. CSF biomarkers were supportive of a treatment effect. Lecanemab was well-tolerated with 9.9% incidence of amyloid-related imaging abnormalities-edema/effusion at 10 mg/kg biweekly. Conclusions BAN2401-G000-201 did not meet the 12-month primary endpoint. However, prespecified 18-month Bayesian and frequentist analyses demonstrated reduction in brain amyloid accompanied by a consistent reduction of clinical decline across several clinical and biomarker endpoints. A phase 3 study (Clarity AD) in early Alzheimer’s disease is underway. Trial registration Clinical Trials.gov NCT01767311 .
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- 2021
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189. Case report: Hepatitis A preceding Guillain-Barré syndrome
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A. Habbu, Shobha D. Chitambar, Rahul S. Fadnis, S.G. Bhatia, and Madhuri S. Joshi
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Male ,Time Factors ,Adolescent ,viruses ,Acute motor axonal neuropathy ,Guillain-Barre Syndrome ,Hepatitis A Antibodies ,Virus ,Cerebrospinal fluid ,Virology ,Genotype ,Medicine ,Humans ,Feces ,Guillain-Barre syndrome ,business.industry ,Hepatitis A ,medicine.disease ,Immunoglobulin A ,Titer ,Infectious Diseases ,Immunoglobulin M ,Immunoglobulin G ,Immunology ,RNA, Viral ,Hepatitis A virus ,business - Abstract
A case of acute hepatitis A with Guillain-Barre Syndrome subtype AMAN (acute motor axonal neuropathy) in a 17-year-old male is reported. Serum and cerebrospinal fluid were positive for anti-hepatitis A virus (HAV) IgM, IgG, and IgA. The onset of the syndrome was evident in week 3 of illness. The remarkably high titers of serum anti-HAV IgG appeared unique to a hepatitis A patient with the syndrome. Phylogenetic analysis of the HAV genome detected in the serum and feces revealed genotype IIIA, circulating commonly in Pune, western India.
- Published
- 2006
190. Comparison of Upper Lip Bite Test and Ratio of Height to Thyromental Distance with Other Airway Assessment Tests for Predicting Difficult Endotracheal Intubation.
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Shobha, D, Adiga, Maitri, Rani, D, Kannan, Sudheesh, and Nethra, S
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- *
AIRWAY extubation , *ANESTHESIA , *DEATH rate - Abstract
Background and Aims: Unanticipated difficult intubation or the failed intubation in operating room and in emergency department is an imperative source of anesthesia-related patient's mortality. The aim of this study is to compare the predictive value of upper lip bite test (ULBT) and ratio of height to thyromental distance (RHTMD) with other commonly used preoperative airway assessment tests for predicting difficult intubation in Indian population. Materials and Methods: In this prospective, single-blinded observational study, 260 adult patients of either sex, belonging to American Society of Anesthesiologists physical Status I and II undergoing elective surgical procedure under general anesthesia were included in the study. ULBT, RHTMD, inter-incisor gap, modified Mallampati grade, horizontal length of the mandible, head and neck movements, sternomental distance, and TMD were assessed preoperatively and correlated with Cormack and Lehane's grading during laryngoscopy under anesthesia. Statistical analysis was done by Chi-square and Fisher's exact test. Results: ULBT and RHTMD had highest sensitivity (66.7% and 63.3%), specificity (99.1% and 89.6%), positive predictive value (90.9% and 44.2%), and negative predictive value (96.9% and 95.0%), respectively, when compared to other parameters in predicting difficult airway. Conclusion: ULBT and RHTMD may be used as a simple bedside airway assessment tools for prediction of difficult intubation. [ABSTRACT FROM AUTHOR]
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- 2018
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191. Sensitive ELISA tests for detection of anti-hepatitis A virus antibodies
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Shobha D. Chitambar, Vidya A. Arankalle, K. Banerjee, and Madhuri S. Joshi
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Microbiology (medical) ,biology ,business.industry ,Immunology ,biology.protein ,Medicine ,Antibody ,business ,Virology ,Hepatitis a virus - Published
- 1996
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192. Cephalosporin resistance: Challenges in providing appropriate and effective treatment protocols
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Patil, Asha B, primary, Nadagir, Shobha D, additional, Shettar, Shyamala, additional, Lakshminarayana, S A, additional, and Fasiha, Syeda M, additional
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- 2015
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193. Nanoporous aluminosilicate catalyst with 3D cage-type porous structure as an efficient catalyst for the synthesis of benzimidazole derivatives
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Chari, Murugulla A., Shobha, D., Kenawy, El-Refaie, Al-Deyab, Salem S., Reddy, B.V. Subba, and Vinu, Ajayan
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- 2010
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194. Molecular characterization of group B rotavirus circulating in pigs from India: Identification of a strain bearing a novel VP7 genotype, G21
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Lahon, Anismrita, primary, Ingle, Vijay C., additional, Birade, Hemant S., additional, Raut, Chandrasekhar G., additional, and Chitambar, Shobha D., additional
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- 2014
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195. Molecular surveillance of non-polio enterovirus infections in patients with acute gastroenteritis in Western India: 2004-2009
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Patil, Pooja R., primary, Chitambar, Shobha D., additional, and Gopalkrishna, V., additional
- Published
- 2014
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196. Exploring the concurrent presence of hepatitis A virus genome in serum, stool, saliva, and urine samples of hepatitis A patients
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Joshi, Madhuri S., primary, Bhalla, Shilpa, additional, Kalrao, Vijay R., additional, Dhongade, Ramchandra K., additional, and Chitambar, Shobha D., additional
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- 2014
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197. Ophthalmomyiasis Externa Caused by Oestrus ovis
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Seethalakshmi Krishnamurthy Diddapur, Subramanya Giliyar Kota, Shobha D. Nadagir, and Mahesh Kumar Shankar
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animal structures ,biology ,genetic structures ,fungi ,oestrus ovis ,lcsh:R ,lcsh:Medicine ,Case Report ,larvae ,Anatomy ,biology.organism_classification ,Oestrus ovis ,Foreign body sensation ,eye diseases ,Left eye ,Topical anesthesia ,ophthalmomyiasis externa ,Conjunctival sac ,sense organs - Abstract
A 50-year-old male presented with foreign body sensation, pain, and redness in left eye. Slit-lamp biomicroscopy revealed tiny larvae crawling around the conjunctival sac. The larvae, numbering 13, were mechanically removed under topical anesthesia and identified under light microscope as first-stage larvae of Oestrus ovis causing ophthalmomyiasis externa.
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- 2012
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198. Prevalence of multidrug-resistant tuberculosis among category II treatment failures in North Karnataka
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AM Yashwant, Shobha D Nadgir, Mohammed Ashraf Ali S Namaji, Mahesh S Kumar, KB Jnaneshwara, and DS Shylendra
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medicine.medical_specialty ,Tuberculosis ,business.industry ,Transmission (medicine) ,Revised National Tuberculosis Control Program ,Disease ,medicine.disease ,Surgery ,Multiple drug resistance ,Internal medicine ,Medicine ,Sputum ,medicine.symptom ,Stage (cooking) ,business ,Rifampicin ,medicine.drug - Abstract
Introduction: The worldwide emergence of multidrug-resistant tuberculosis (MDR-TB) is a major threat to tuberculosis (TB) control. Objectives: This study was undertaken to know the prevalence of MDR-TB among category II patients, who were treatment failures, in North Karnataka. Materials and Methods: Category II pulmonary TB includes those patients who are treatment failures, relapsed after treatment or defaulted during previous treatment. Only the patients who had failed previous treatment were included in the present study. Sputum samples obtained from all these patients, received between January 2014 and June 2014, were subjected to microscopy by the Ziehl-Neelsen (ZN) method, as per Revised National Tuberculosis Control Program (RNTCP) protocol. Sputum-positive samples were subjected to drug susceptibility testing by the rapid molecular assay, line probe assay (LPA). Results: A total of 379 patients were enrolled. Of these, 355 patients' sputum samples were positive for acid-fast bacilli (AFB) and one sample negative for AFB was culture-positive. All of these were subjected to LPA. The total number of MDR-TB detected was 71 (18.73%) patients. Mono-drug resistance to Rifampicin was detected in 30 (7.91%) and Isoniazid resistance in 32 (8.44%) patients. Conclusions: The magnitude of resistance being considerably high among the patients with treatment failures, it is essential to screen these patients for MDR-TB. Rapid diagnostic tests (molecular tests) such as the LPA will facilitate the diagnosis of MDR-TB at an early stage and thus will minimise transmission of the disease.
- Published
- 2015
- Full Text
- View/download PDF
199. Cephalosporin resistance: Challenges in providing appropriate and effective treatment protocols
- Author
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Asha B Patil, Shobha D Nadagir, Shyamala Shettar, S A Lakshminarayana, and Syeda M Fasiha
- Published
- 2015
- Full Text
- View/download PDF
200. Vertical transmission of hepatitis A
- Author
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Ramesh L. Renge, Vidya A. Arankalle, V. S. Dani, and Shobha D. Chitambar
- Subjects
Pediatrics ,medicine.medical_specialty ,business.industry ,Transmission (medicine) ,Day of life ,Infant, Newborn ,Hepatitis A ,India ,Jaundice ,medicine.disease ,Infectious Disease Transmission, Vertical ,Pregnancy ,Pediatrics, Perinatology and Child Health ,Immunology ,medicine ,Humans ,Female ,Viral disease ,Cholestatic Jaundice ,medicine.symptom ,business ,Anti hav ,Full Term - Abstract
Two hospital delivered full term newborn babies were detected to have cholestatic jaundice in the first week of life. They had raised liver enzyme levels, which gradually declined over a period of one month. Both babies were anti HAV IgM positive on 6th day of life in Case 1 and on 7th day of life in Case 2 respectively. Both the mothers had jaundice 20 and 26 days before delivery and had anti HAV IgM positivity two and three weeks prior to delivery in Case 1 and 2 respectively. Hepatitis A virus is not transmitted vertically from mother to baby. However, there are 3 such case reports in literature stating vertical transmission of HAV infection. We are reporting it in two neonates for the first time in India.
- Published
- 2002
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