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151. Rutgers university coastal ocean observation laboratory (RU-COOL) advanced modeling system developed to cost-effectively support offshore wind energy development and operational applications

Author

Scott Glenn, John Kerfoot, Hugh Roarty, Greg Seroka, Louis Bowers, Rich Dunk, Laura Palamara, and Michael Crowley

Subjects
Sea surface temperature, Offshore wind power, Ocean observations, Prevailing winds, Oceanography, Sea breeze, Climatology, Front (oceanography), Environmental science, Subsidence (atmosphere), Upwelling
Abstract

Studies are underway that are evaluating the offshore wind resource along the coast of New Jersey in an effort to determine the variability of the wind resource. One major source of variability is the sea-land breeze circulation that occurs during periods of peak energy demand. The sea breeze front, driven by the thermal difference between the warm land and relatively cooler ocean during hot summer afternoons, propagates inland and under weak atmospheric boundary layer wind conditions can affect much of the state. However, little is known about the offshore component of the sea breeze circulation. A large zone of subsidence over the coastal ocean, and subsequent divergence near the surface, is known to occur in unison with the inland-propagating sea breeze front. RU-COOL's unique monitoring and modeling endeavors are focused on exploring the details of these offshore dynamics of the sea breeze circulation and its development during both coastal upwelling and non-upwelling events. A case study from the August 13, 2012 is analyzed in this paper; coastal upwelling resulted from persistent south to southeasterly winds for days. In addition, a sea breeze front formed in the afternoon, propagating inland and producing a zone of weak winds offshore that coincides with the targeted area of offshore wind development. Model results, using unique declouded satellite sea surface temperature data, are validated inshore against weather radar and offshore against coastal ocean radar (CODAR). Small-scale offshore wind variability is resolved and verified in the model, which will be critical for producing accurate and reliable offshore wind resource assessments and precise operational forecasts for the future.

Published
2012

152. The Ocean Observatories Initiative education and Public Engagement Organization: Using real-time data in the undergraduate classroom

Author

Michael Crowley, Scott Glenn, Sage Lichtenwalner, Janice McDonnell, Joe Wieclawek, and Annette deCharon

Subjects
Regional Scale Nodes, Social network, Multimedia, business.industry, Computer science, Program management, computer.software_genre, Data science, Data visualization, Cyberinfrastructure, Ocean Observatories Initiative, The Internet, Public engagement, business, computer
Abstract

The Ocean Observatories Initiative (OOI) promises to reshape the way ocean science is conducted by providing ocean researchers with access to near real-time data, the ability to control/configure sensors and mobile assets, high-bandwidth infrastructure for images, powerful cyberinfrastructure, and data visualization and modeling tools to conduct their research. Recent advances in the delivery of web-based education, and the use of visualization technology in educational contexts, have led to the development of on-line platforms for instruction that engage students in active scientific inquiry by collecting and analyzing real world data. The OOI Education and Public Engagement (EPE) Implementing Organization will leverage these technologies for ocean education. EPE will construct a series of software tools and a web-based social network that leverages the OOI Cyberinfrastructure to support engagement of a wide range of users. These tools will enable educators and developers to enhance their undergraduate education programs and engage free choice learners using real-time and streaming data provided by the OOI. EPE will enable a new approach to oceanography research, where scientists, students and the public can explore and research the ocean in real-time from their classrooms, offices, dorm rooms, and even their homes. The face of an oceanographer will be expanded well beyond the professor at sea to to a student at home viewing and analyzing exactly the same data at exactly the same time. In addition to the OOI EPE Implementing Organization (IO), there are additional IOs supporting the OOI construction (Figure 1): Regional Scale Nodes (RSN): RSN will deploy sensors to study Hydrate Ridge, an area of massive sub-seafloor gashydrate deposits, and Axial Seamount, an active submarine volcano. Coastal and Global Scale Nodes (CGSN): CGSN will deploy a global array of moorings and underwater gliders to provide sustained, but adaptable, access to complex coastal and global systems. Cyberinfrastructure (CI): The CI will provide a common operating infrastructure connecting and coordinating the operations of the marine components with the OOI scientific and educational pursuits. Program Management Office (PMO): The OOI program is funded by the National Science Foundation (NSF) and managed by the OOI PMO, located at the Consortium for Ocean Leadership (COL) offices in Washington, D.C.

Published
2012

153. A Coupled Hydrodynamic–Bottom Boundary Layer Model of Ekman Flow on Stratified Continental Shelves

Author

Scott Glenn and Timothy R. Keen

Subjects
Ekman layer, Drag coefficient, Meteorology, Turbulence, Stratification (water), Oceanography, Physics::Geophysics, Physics::Fluid Dynamics, Waves and shallow water, Boundary layer, Downwelling, Geomorphology, Physics::Atmospheric and Oceanic Physics, Geology, Geostrophic wind
Abstract

This paper describes a hydrodynamic model with turbulent energy closure that uses a simplified wave-current interaction model of the bottom boundary layer to compute bed drag coefficients. The coupled model is used to investigate the interaction of the upper and lower boundary layers with the geostrophic core flow for simple shelf geometry and forcing, and to evaluate the effects of increased bottom friction on coastal hydrodynamics for summer and winter stratification. The thickness of the bottom boundary layer predicted by the model ranges from 10 to 35 m and is consistent with observations from the California shelf. The increased bottom friction calculated by the coupled model in intermediate water depths increases bottom Ekman veering (leftward in the Northern Hemisphere) by as much as 10° if stratification is strong, thus enhancing downwelling and upwelling. Currents along isobaths in shallow water are uniformly decreased by as much as 25% in the coupled model for both summer and winter init...

Published
1994

154. Data Assimilation and Model Evaluation Experiment Datasets

Author

Scott Glenn, Wen Qian, and Chung-Chieng A. Lai

Subjects
Gulf Stream, Atmospheric Science, Software documentation, Data processing, Data assimilation, Data acquisition, Meteorology, Computer science, Initialization, Bathythermograph, Interpolation
Abstract

The Institute for Naval Oceanography, in cooperation with Naval Research Laboratories and universities, executed the Data Assimilation and Model Evaluation Experiment (DAMEE) for the Gulf Stream region during fiscal years 1991-1993. Enormous effort has gone into the preparation of several high-quality and consistent datasets for model initialization and verification. This paper describes the preparation process, the temporal and spatial scopes, the contents, the structure, etc., of these datasets. The goal of DAMEE and the need of data for the four phases of experiment are briefly stated. The preparation of DAMEE datasets consisted of a series of processes: (1) collection of observational data; (2) analysis and interpretation; (3) interpolation using the Optimum Thermal Interpolation System package; (4) quality control and re-analysis; and (5) data archiving and software documentation. The data products from these processes included a time series of 3D fields of temperature and salinity, 2D fields of surface dynamic height and mixed-layer depth, analysis of the Gulf Stream and rings system, and bathythermograph profiles. To date, these are the most detailed and high-quality data for mesoscale ocean modeling, data assimilation, and forecasting research. Feedback from ocean modeling groups who tested this data was incorporated into its refinement. Suggestions for DAMEE data usages include (1) ocean modeling and data assimilation studies, (2) diagnosis and theoretical studies, and (3) comparisons with locally detailed observations.

Published
1994

155. Canada Thistle (Cirsium arvense) Control in No-Tillage Corn (Zea mays)

Author

Lane K. Heimer and Scott Glenn

Subjects
0106 biological sciences, food.ingredient, Sowing, 04 agricultural and veterinary sciences, Plant Science, 01 natural sciences, Clopyralid, 010602 entomology, chemistry.chemical_compound, No-till farming, food, chemistry, Agronomy, Glyphosate, Dicamba, 040103 agronomy & agriculture, Thistle, 0401 agriculture, forestry, and fisheries, Cirsium arvense, Weed, Agronomy and Crop Science
Abstract

Canada thistle control in no-tillage corn was studied in Western Maryland from 1990 to 1992. The best treatment at planting for controlling Canada thistle was a tank mixture of 2240 g/ha glyphosate plus 560 g/ha 2,4-D. Clopyralid applied at 210 and 280 g/ha alone and 106 g/ha tank mixed with 560 g/ha 2,4-D effectively controlled Canada thistle in no-tillage corn (85 to 96%). Nicosulfuron applied at 35 g/ha and 20 or 40 g/ha primisulfuron suppressed Canada thistle (59 to 75%). Tank mixtures of nicosulfuron or primisulfuron with 2,4-D or dicamba generally increased Canada thistle control (75 to 87%) compared with control by these herbicides applied alone. Treatments that controlled Canada thistle generally increased corn yields compared with the weedy controls. Yield increases were most dramatic in 1991 when precipitation was low. Nomenclature: Clopyralid, 3,6-dichloro-2-pyridinecarboxylic acid; dicamba, 3,6-dichloro-2-methoxybenzoic acid; glyphosate, N-(phosphonomethyl)glycine; nicosulfuron, 2-[[[[(4,6-dimethoxy-2-pyrimidinyl)amino]carbonyl]amino]sulfonyl]-N,N-dimethyl-3pyridinecarboxyamide; primisulfuron, 2[[[[[4,bis(difluoromethoxy)-2-pyrimidinyl]amino]carbonyl]amino]sulfonyl]benzoic acid; 2,4-D, (2,4-dichlorophenoxy)acetic acid; Canada thistle, Cirsium arvense (L.) Scop., #3 CIRAR; corn, Zea mays L. 'Pioneer 3192.' Additional index words: Herbicide, perennial weed, reduced tillage, clopyralid, dicamba, glyphosate, nicosulfuron, primisulfuron, 2,4-D, CIRAR.

Published
1994

156. Hemp Dogbane (Apocynum cannabinum) and Wild Blackberry (Rubus allegheniensis) Control in No-tillage Corn (Zea mays)

Author

Neil G. Anderson and Scott Glenn

Subjects
0106 biological sciences, biology, Apocynaceae, Apocynum, Triclopyr, 04 agricultural and veterinary sciences, Plant Science, Dogbane, biology.organism_classification, Weed control, 01 natural sciences, 010602 entomology, chemistry.chemical_compound, No-till farming, Agronomy, chemistry, Rubus allegheniensis, Dicamba, 040103 agronomy & agriculture, 0401 agriculture, forestry, and fisheries, Agronomy and Crop Science
Abstract

Hemp dogbane and wild blackberry have become significant weed problems in no-tillage corn production in Maryland. Nicosulfuron (31 to 62 g ha−1) plus crop oil concentrate (COC) gave 67% or more hemp dogbane and wild blackberry control. There was no difference in hemp dogbane or wild blackberry control between 31 and 94 g ai ha−1nicosulfuron. Tank mixtures of 2,4-D or dicamba with nicosulfuron gave 72 to 100% hemp dogbane and wild blackberry control. Hemp dogbane control following applications of 560 g ha−12,4-D was 97% in 1989 and 63% in 1990. Wild blackberry control with 2,4-D was 40% both years. Dicamba at 280 g ha−1gave 70 and 55% control of hemp dogbane and 75 and 65% control of wild blackberry in 1989 and 1990, respectively. Triclopyr plus 2,4-D provided 72 to 98% hemp dogbane control and 92 to 98% wild blackberry control. However, triclopyr plus 2,4-D applied at 280 plus 560 g ha−1injured corn, and corn yields were reduced compared with weedy controls in 1990.

Published
1993

157. Temperature, salinity, and density variability in the central Middle Atlantic Bight

Author

Scott Glenn, Renato M. Castelao, and Oscar Schofield

Subjects
Atmospheric Science, Ecology, Discharge, Temperature salinity diagrams, Paleontology, Soil Science, Stratification (water), Forestry, Aquatic Science, Oceanography, Bottom water, Salinity, Geophysics, Space and Planetary Science, Geochemistry and Petrology, Earth and Planetary Sciences (miscellaneous), Environmental science, Upwelling, Hydrography, Thermocline, Earth-Surface Processes, Water Science and Technology
Abstract

[1] Four years of sustained glider observations are used to compute the seasonal cycle of hydrographic fields in the central Middle Atlantic Bight (MAB). Results reveal a large phase lag in near bottom temperatures, with peak values occurring in September at the inner shelf, in October at the mid shelf, and in November at the outer shelf. Unlike the northern MAB, the seasonal cycle explains over 70% of the near-surface salinity variability. At the inner shelf and offshore near the bottom, however, most of the variance is due to pulses in river discharge and to shifts in the position of the shelfbreak front. Cross-shelf density gradients inshore of the 60-m isobath are dominated by salinity during winter and spring, with temperature contributing significantly from August to October. This is because bottom waters near the coast are warm due to the deepening of the thermocline during fall, but offshore waters are still influenced by the cold pool. The vertical stratification seasonal variability is also large. Early in the year, stratification is small and entirely due to salinity. By May, salinity still dominates vertical gradients near the coast, but temperature and salinity contribute equally to the density stratification offshore. During summer, stratification is dominated by temperature. Temperature interannual variability was small during the sampling period, but surface salinity was anomalously low by 1.2 psu in summer 2006. The anomaly was due to larger than average discharge from the Hudson River in early summer during a period of strong upwelling favorable winds.

Published
2010

158. Crystal structure of a domain of unknown function (DUF1537) from Ralstonia eutropha H16 (H16_A1561), Target EFI-511666, complex with ADP.

Author

Vetting, M.W., primary, Al Obaidi, N.F., additional, Toro, R., additional, Morisco, L.L., additional, Benach, J., additional, Wasserman, S.R., additional, Attonito, J.D., additional, Scott Glenn, A., additional, Chamala, S., additional, Chowdhury, S., additional, Lafleur, J., additional, Love, J., additional, Seidel, R.D., additional, Whalen, K.L., additional, Gerlt, J.A., additional, and Almo, S.C., additional

Published
2015
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159. Crystal Structure of an ABC transporter periplasmic solute binding protein (IPR025997) from Actinobacillus succinogenes 130z(Asuc_0081, TARGET EFI-511065) with bound D-allose

Author

Yadava, U., primary, Vetting, M.W., additional, Al Obaidi, N.F., additional, Toro, R., additional, Morisco, L.L., additional, Benach, J., additional, Koss, J., additional, Wasserman, S.R., additional, Attonito, J.D., additional, Scott Glenn, A., additional, Chamala, S., additional, Chowdhury, S., additional, Lafleur, J., additional, Love, J., additional, Seidel, R.D., additional, Whalen, K.L., additional, Gerlt, J.A., additional, and Almo, S.C., additional

Published
2015
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160. Crystal Structure of an ABC transporter Solute Binding Protein from Agrobacterium vitis(Avis_5339, TARGET EFI-511225) bound with alpha-D-Tagatopyranose

Author

Yadava, U., primary, Al Obaidi, N.F., additional, Morisco, L.L., additional, Benach, J., additional, Koss, J., additional, Wasserman, S.R., additional, Attonito, J.D., additional, Scott Glenn, A., additional, Chamala, S., additional, Chowdhury, S., additional, Lafleur, J., additional, Love, J., additional, Seidel, R.D., additional, Whalen, K.L., additional, Gerlt, J.A., additional, and Almo, S.C., additional

Published
2015
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163. Crystal Structure of Glutamine Synthetase from Chromohalobacter salexigens DSM 3043(Csal_0679, TARGET EFI-550015) with bound ADP

Author

Yadava, U., primary, Vetting, M.W., additional, Al Obaidi, N.F., additional, Toro, R., additional, Morisco, L.L., additional, Benach, J., additional, Koss, J., additional, Wasserman, S.R., additional, Attonito, J.D., additional, Scott Glenn, A., additional, Chamala, S., additional, Chowdhury, S., additional, Lafleur, J., additional, Love, J., additional, Seidel, R.D., additional, Whalen, K.L., additional, Gerlt, J.A., additional, and Almo, S.C., additional

Published
2015
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164. CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM PSEUDOALTEROMONAS ATLANTICA T6c(Patl_2292, TARGET EFI-510180) WITH BOUND SODIUM AND PYRUVATE

Author

Yadava, U., primary, Vetting, M.W., additional, Al Obaidi, N.F., additional, Toro, R., additional, Morisco, L.L., additional, Benach, J., additional, Wasserman, S.R., additional, Attonito, J.D., additional, Scott Glenn, A., additional, Chamala, S., additional, Chowdhury, S., additional, Lafleur, J., additional, Love, J., additional, Seidel, R.D., additional, Whalen, K.L., additional, Gerlt, J.A., additional, and Almo, S.C., additional

Published
2015
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165. Crystal Structure of an ABC transporter Solute Binding Protein from Thermotoga Lettingae TMO (Tlet_1705, TARGET EFI-510544) bound with alpha-D-Tagatose

Author

Yadava, U., primary, Vetting, M.W., additional, Al Obaidi, N.F., additional, Toro, R., additional, Morisco, L.L., additional, Benach, J., additional, Koss, J., additional, Wasserman, S.R., additional, Attonito, J.D., additional, Scott Glenn, A., additional, Chamala, S., additional, Chowdhury, S., additional, Lafleur, J., additional, Love, J., additional, Seidel, R.D., additional, Whalen, K.L., additional, Gerlt, J.A., additional, and Almo, S.C., additional

Published
2015
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166. Crystal structure of a terpene synthase from Streptomyces lydicus, target EFI-540129

Author

Toro, R., primary, Bhosle, R., additional, Vetting, M.W., additional, Al Obaidi, N.F., additional, Morisco, L.L., additional, Wasserman, S.R., additional, Sojitra, S., additional, Stead, M., additional, Washington, E., additional, Scott Glenn, A., additional, Chowdhury, S., additional, Evans, B., additional, Hillerich, B., additional, Love, J., additional, Seidel, R.D., additional, Whalen, K.L., additional, Gerlt, J.A., additional, Poulter, C.D., additional, and Almo, S.C., additional

Published
2015
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167. Crystal Structure of a putative Periplasmic Solute binding protein (IPR025997) from Ochrobactrum Anthropi ATCC49188 (Oant_2843, TARGET EFI-511085)

Author

Yadava, U., primary, Vetting, M.W., additional, Al Obaidi, N.F., additional, Toro, R., additional, Morisco, L.L., additional, Benach, J., additional, Koss, J., additional, Wasserman, S.R., additional, Attonito, J.D., additional, Scott Glenn, A., additional, Chamala, S., additional, Chowdhury, S., additional, Lafleur, J., additional, Love, J., additional, Seidel, R.D., additional, Whalen, K.L., additional, Gerlt, J.A., additional, and Almo, S.C., additional

Published
2015
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168. CRYSTAL STRUCTURE OF AN ABC TRANSPORTER SOLUTE BINDING PROTEIN (IPR025997) FROM AGROBACTERIUM VITIS S4 (Avi_5305, TARGET EFI-511224) WITH BOUND ALPHA-D-GALACTOSAMINE

Author

Yadava, U., primary, Vetting, M.W., additional, Al Obaidi, N.F., additional, Toro, R., additional, Morisco, L.L., additional, Benach, J., additional, Wasserman, S.R., additional, Attonito, J.D., additional, Scott Glenn, A., additional, Chamala, S., additional, Chowdhury, S., additional, Lafleur, J., additional, Love, J., additional, Seidel, R.D., additional, Whalen, K.L., additional, Gerlt, J.A., additional, and Almo, S.C., additional

Published
2015
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169. Slocum Glider energy measurement and simulation infrastructure

Author

Hans Christian Woithe, Ivan Seskar, Ilya Chigirev, Scott Glenn, Yuriy Shames, Oscar Schofield, Murium Iqbal, David Aragon, and Ulrich Kremer

Subjects
Power management, Engineering, Underwater glider, Energy management, business.industry, Systems engineering, Glider, Provisioning, Energy consumption, Remotely operated underwater vehicle, business, Sonar, Marine engineering
Abstract

Autonomous underwater vehicles (AUVs) are indispensable tools for marine scientists to study the world's oceans. Depending on their missions, AUVs are equipped with advanced sensors (sonar, cameras, acoustic communication, bio-sensors), have on-board computers for data analysis (image analysis, data compression), and are capable of on-board decision making (resource planning, swarming). Since AUVs operate solely on battery power, power and energy management is a crucial issue. Mission-critical tradeoff decisions have to be made between energy consumption and sensing, data processing, and communication activities. Mission planning has to consider these tradeoffs when provisioning resources for expected future events, or when dealing with changing environmental conditions such weather, water currents, and seafloor profiles. Effective power and energy management requires knowledge about the actual energy consumption of each active component within the AUV. Effective planning requires simulators that can predict energy consumptions based on expected future events and environmental conditions. In this paper, we discuss the design and implementation of a power measurement infrastructure for the Teledyne Webb research Slocum glider. This infrastructure can be used for online power/energy management or to better understand the time-dependent energy consumption profile of the active glider components during a particular mission. We also discuss the design of a new simulation environment for the Slocum glider which uses the power/energy data obtained by our measurement infrastructure, in addition to seafloor and coastal radar information. We illustrate the effectiveness of the new tools in the context of planning a glider flight across the continental shelf off the coast of New Jersey.

Published
2010

170. Crystal Structure of a Periplasmic Solute binding protein (IPR025997) from Streptobacillus moniliformis DSM-12112 (Smon_0317, TARGET EFI-511281) with bound D-Galactose

Author

Yadava, U., primary, Vetting, M.W., additional, Al Obaidi, N.F., additional, Toro, R., additional, Morisco, L.L., additional, Benach, J., additional, Koss, J., additional, Wasserman, S.R., additional, Attonito, J.D., additional, Scott Glenn, A., additional, Chamala, S., additional, Chowdhury, S., additional, Lafleur, J., additional, Love, J., additional, Seidel, R.D., additional, Whalen, K.L., additional, Gerlt, J.A., additional, and Almo, S.C., additional

Published
2015
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171. Seasonal climatology of wind-driven circulation on the New Jersey Shelf

Author

Donglai Gong, Josh Kohut, and Scott Glenn

Subjects
Atmospheric Science, Soil Science, Stratification (water), Aquatic Science, Oceanography, Wind driven, Geochemistry and Petrology, Earth and Planetary Sciences (miscellaneous), Earth-Surface Processes, Water Science and Technology, geography, geography.geographical_feature_category, Ecology, Continental shelf, Paleontology, Forestry, Storm, Drifter, Geophysics, Space and Planetary Science, Climatology, Upwelling, Submarine pipeline, Shelf break, Geology
Abstract

[1] The spatial structure of the mean and seasonal surface circulation in the central region of the Mid‐Atlantic Bight (New Jersey Shelf) are characterized using 6 years of CODAR long‐range HF radar data (2002–2007). The mean surface flow over the New Jersey Shelf is 2–12 cm/s down shelf and offshore to the south. The detided root‐mean‐square (RMS) velocity variability ranges from 11 to 20 cm/s. The variability is on the order of the mean current offshore and several times that of the mean current nearshore. The Hudson Shelf Valley and the shelf break act as dynamical boundaries that define the New Jersey Shelf. The surface flow on the New Jersey Shelf depends on topography, seasonal stratification, and wind forcing. The flow is in the approximate direction of the wind during the unstratified season and more to the right of the wind during the stratified season. During the stratified summer season, the dominant along‐shore upwelling favorable winds from the SW drive cross‐shelf offshore flow. During the unstratified/well‐mixed winter season, the dominant cross‐shore NW winds drive cross‐shelf offshore flows. During the transition seasons of spring and autumn, along‐shore NE winds, often associated with storm events, drive energetic down‐shelf, along‐shelf flows. The surface transport pathways are either cross‐shelf dominated during summer and winter or along‐shelf dominated during the transition seasons. The residence time of surface Lagrangian drifters on the New Jersey Shelf ranged from 1 to 7 weeks with summer and autumn showing faster transport than winter and spring.

Published
2010

172. Crystal structure of a domain of unknown function (DUF1537) from Pectobacterium atrosepticum (ECA3761), Target EFI-511609, with bound D-threonate, domain swapped dimer

Author

Vetting, M.W., primary, Al Obaidi, N.F., additional, Toro, R., additional, Morisco, L.L., additional, Benach, J., additional, Wasserman, S.R., additional, Attonito, J.D., additional, Scott Glenn, A., additional, Chamala, S., additional, Chowdhury, S., additional, Lafleur, J., additional, Love, J., additional, Seidel, R.D., additional, Whalen, K.L., additional, Gerlt, J.A., additional, and Almo, S.C., additional

Published
2015
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173. Crystal Structure of a putative Dehydrogenase from Sulfitobacter sp. (COG1028) (TARGET EFI-513936) in its APO form

Author

Yadava, U., primary, Vetting, M.W., additional, Al Obaidi, N.F., additional, Toro, R., additional, Morisco, L.L., additional, Benach, J., additional, Koss, J., additional, Wasserman, S.R., additional, Attonito, J.D., additional, Scott Glenn, A., additional, Chamala, S., additional, Chowdhury, S., additional, Lafleur, J., additional, Love, J., additional, Seidel, R.D., additional, Whalen, K.L., additional, Gerlt, J.A., additional, and Almo, S.C., additional

Published
2015
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174. Crystal Structure of an ABC transporter solute binding protein (IPR025997) from Bacillus halodurans C-125 (BH2323, TARGET EFI-511484) with bound myo-inositol

Author

Yadava, U., primary, Vetting, M.W., additional, Al Obaidi, N.F., additional, Toro, R., additional, Morisco, L.L., additional, Benach, J., additional, Koss, J., additional, Wasserman, S.R., additional, Attonito, J.D., additional, Scott Glenn, A., additional, Chamala, S., additional, Chowdhury, S., additional, Lafleur, J., additional, Love, J., additional, Seidel, R.D., additional, Whalen, K.L., additional, Gerlt, J.A., additional, and Almo, S.C., additional

Published
2015
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175. Crystal Structure of a putative oxidoreductase from Thermus Thermophilus HB27 (TT_P0034, TARGET EFI-513932) in its APO form

Author

Yadava, U., primary, Vetting, M.W., additional, Al Obaidi, N.F., additional, Toro, R., additional, Morisco, L.L., additional, Benach, J., additional, Koss, J., additional, Wasserman, S.R., additional, Attonito, J.D., additional, Scott Glenn, A., additional, Chamala, S., additional, Chowdhury, S., additional, Lafleur, J., additional, Love, J., additional, Seidel, R.D., additional, Whalen, K.L., additional, Gerlt, J.A., additional, and Almo, S.C., additional

Published
2015
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176. CRYSTAL STRUCTURE OF AN ABC TRANSPORTER SOLUTE BINDING PROTEIN (IPR025997) FROM BRADYRHIZOBIUM sp. BTAi1 (BBta_2440, TARGET EFI-511490) WITH BOUND BIS-TRIS

Author

Vetting, M.W., primary, Al Obaidi, N.F., additional, Toro, R., additional, Morisco, L.L., additional, Benach, J., additional, Koss, J., additional, Wasserman, S.R., additional, Attonito, J.D., additional, Scott Glenn, A., additional, Chamala, S., additional, Chowdhury, S., additional, Lafleur, J., additional, Love, J., additional, Seidel, R.D., additional, Whalen, K.L., additional, Gerlt, J.A., additional, and Almo, S.C., additional

Published
2015
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177. Crystal structure of a domain of unknown function (DUF1537) from Bordetella bronchiseptica (BB3215), Target EFI-511620, with bound citrate, domain swapped dimer, space group C2221

Author

Vetting, M.W., primary, Al Obaidi, N.F., additional, Toro, R., additional, Morisco, L.L., additional, Benach, J., additional, Wasserman, S.R., additional, Attonito, J.D., additional, Scott Glenn, A., additional, Chamala, S., additional, Chowdhury, S., additional, Lafleur, J., additional, Love, J., additional, Seidel, R.D., additional, Whalen, K.L., additional, Gerlt, J.A., additional, and Almo, S.C., additional

Published
2015
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178. Crystal structure of a domain of unknown function (DUF1537) from Pectobacterium atrosepticum (ECA3761), Target EFI-511609, APO structure, domain swapped dimer

Author

Vetting, M.W., primary, Al Obaidi, N.F., additional, Toro, R., additional, Morisco, L.L., additional, Benach, J., additional, Wasserman, S.R., additional, Attonito, J.D., additional, Scott Glenn, A., additional, Chamala, S., additional, Chowdhury, S., additional, Lafleur, J., additional, Love, J., additional, Seidel, R.D., additional, Whalen, K.L., additional, Gerlt, J.A., additional, and Almo, S.C., additional

Published
2015
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179. Crystal structure of a TRAP periplasmic solute binding protein from Chromohalobacter salexigens DSM 3043 (Csal_0678), Target EFI-501078, with bound (S)-(+)-2-Amino-1-propanol.

Author

Vetting, M.W., primary, Al Obaidi, N.F., additional, Toro, R., additional, Morisco, L.L., additional, Benach, J., additional, Wasserman, S.R., additional, Attonito, J.D., additional, Scott Glenn, A., additional, Chamala, S., additional, Chowdhury, S., additional, Lafleur, J., additional, Love, J., additional, Seidel, R.D., additional, Whalen, K.L., additional, Gerlt, J.A., additional, and Almo, S.C., additional

Published
2015
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180. CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM DESULFOVIBRIO VULGARIS (Deval_0042, TARGET EFI-510114) BOUND TO COPURIFIED (R)-PANTOIC ACID

Author

Vetting, M.W., primary, Al Obaidi, N.F., additional, Toro, R., additional, Morisco, L.L., additional, Benach, J., additional, Wasserman, S.R., additional, Attonito, J.D., additional, Scott Glenn, A., additional, Chamala, S., additional, Chowdhury, S., additional, Lafleur, J., additional, Love, J., additional, Seidel, R.D., additional, Whalen, K.L., additional, Gerlt, J.A., additional, and Almo, S.C., additional

Published
2015
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181. Crystal structure of a TRAP periplasmic solute binding protein from Pseudomonas putida F1 (Pput_1203), Target EFI-500184, with bound D-glucuronate

Author

Vetting, M.W., primary, Al Obaidi, N.F., additional, Toro, R., additional, Morisco, L.L., additional, Benach, J., additional, Wasserman, S.R., additional, Attonito, J.D., additional, Scott Glenn, A., additional, Chamala, S., additional, Chowdhury, S., additional, Lafleur, J., additional, Love, J., additional, Seidel, R.D., additional, Whalen, K.L., additional, Gerlt, J.A., additional, and Almo, S.C., additional

Published
2015
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182. Crystal structure of a domain of unknown function (DUF1537) from Bordetella bronchiseptica (BB3215), Target EFI-511620, with bound citrate, domain swapped dimer, space group P6522

Author

Vetting, M.W., primary, Al Obaidi, N.F., additional, Toro, R., additional, Morisco, L.L., additional, Benach, J., additional, Wasserman, S.R., additional, Attonito, J.D., additional, Scott Glenn, A., additional, Chamala, S., additional, Chowdhury, S., additional, Lafleur, J., additional, Love, J., additional, Seidel, R.D., additional, Whalen, K.L., additional, Gerlt, J.A., additional, and Almo, S.C., additional

Published
2015
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183. Gliders as a Component of Future Observing Systems

Author

Gerd Krahmann, Lucas Merckelbach, L. Petit de la Villeon, Oscar Schofield, Daniel L. Rudnick, Mary Jane Perry, Uwe Send, Sylvie Pouliquen, Michel Rixen, Alberto Alvarez, Laurent Mortier, Russ E. Davis, Craig M. Lee, Charles C. Eriksen, Pascale Lherminier, Pierre-Marie Poulain, Clayton Jones, Hervé Claustre, Claudia Schmid, Svein Østerhus, Scott Glenn, Josh Kohut, Toby Sherwin, Bartolomé Garau, Thierry Carval, Alexandre Ganachaud, G. Meyers, Lionel Gourdeau, Simón Ruiz, Gwyn Griffiths, Doug Webb, Thierry Terre, Vincent Taillandier, Joaquín Tintoré, Johannes Karstensen, David A. Smeed, Martin Visbeck, Pierre Testor, John A. Barth, Jeffrey T. Sherman, B. Owens, Ralf Bachmayer, Daniel Hayes, Charitha Pattiaratchi, Hall, J., Harrison, D.E., Stammer, D., Hall, J. (ed.), Harrison, D.E. (ed.), and Stammer, D. (ed.)

Subjects
0106 biological sciences, EQUIPEMENT SCIENTIFIQUE, 010504 meteorology & atmospheric sciences, 010604 marine biology & hydrobiology, media_common.quotation_subject, Art, 01 natural sciences, CYCLE BIOGEOCHIMIQUE, CIRCULATION OCEANIQUE, OCEAN, SURVEILLANCE, 14. Life underwater, Humanities, PLANEUR, SATELLITE, 0105 earth and related environmental sciences, media_common
Abstract

Pierre Testor(1), Gary Meyers(2), Chari Pattiaratchi(3) , Ralf Bachmayer(4), Dan Hayes(5), Sylvie Pouliquen(6), Loic Petit de la Villeon(6), Thierry Carval(6), Alexandre Ganachaud(7), Lionel Gourdeau(7), Laurent Mortier(8), Herve Claustre(9), Vincent Taillandier(9), Pascale Lherminier(10), Thierry Terre(10), Martin Visbeck(11), Johannes Karstensen(11), Gerd Krahmann(11), Alberto Alvarez(12), Michel Rixen(12), Pierre-Marie Poulain(13), Svein Osterhus(14), Joaquin Tintore(15), Simon Ruiz(15), Bartolomeo Garau(15), David Smeed(16), Gwyn Griffiths(16), Lucas Merckelbach(16), Toby Sherwin(17), Claudia Schmid(18), John A. Barth(19), Oscar Schofield(20), Scott Glenn(20), Josh Kohut(20), Mary Jane Perry(21), Charlie Eriksen(22), Uwe Send(23), Russ Davis(23), Daniel Rudnick(23), Jeff Sherman(23), Clayton Jones(24), Douglas Webb(24), Craig Lee(25), Breck Owens(26)

Published
2010

185. Using Gliders to Resolve Dynamics of Dust and Phytoplankton in the Mediterranean

Author

Oscar Schofield, Scott Glenn, and Charles C. Trees

Subjects
Mediterranean climate, Optical detectors, Colored dissolved organic matter, Oceanography, Geography, Mediterranean sea, Ocean color, Phytoplankton, Spatial distribution
Abstract

Optical properties are complex representing variable contributions of phytoplankton, Colored Dissolved Organic Matter (CDOM), marine and atmospherically derived non algal particles. The relative contributions of these are particularly complex for enclosed inland seas such as the Mediterranean. Results have shown that it is especially critical to collect regional ocean color data from satellites, which must be complemented with spatial subsurface measurements, which can be measured with the physical/optical sensor packages mounted on Webb gliders. We propose to use Webb Gliders to provide a regional subsurface physical and optical dataset to support ship-based NASA, NATO, and ONR efforts being conducted in the Mediterranean in late spring 2008 and early Autumn 2009. The Gliders will be used to map the subsurface features over monthly timescales and assess to what degree the non-algal particles are spatially and temporally correlated in space and time.

Published
2010

186. Measurements of dynamic topography during synop utilizing a Geosat synthetic geoid

Author

David L. Porter, Scott Glenn, and Ella B. Dobson

Subjects
Dynamic height, Ground track, SYNOP, Geodesy, law.invention, Gulf Stream, Ocean surface topography, Geophysics, Radar altimeter, law, Position (vector), Geoid, General Earth and Planetary Sciences, Geology
Abstract

Dynamic topography estimates were obtained for the Gulf Stream region employing a previously derived synthetic geoid and Geosat radar altimeter measurements. Ascending tracks passed through the central and eastern arrays of the Synoptic Ocean Prediction experiment. By utilizing the geoid estimate instead of the mean altimetric signal, the axis position and velocity can be computed. A time series of the dynamic height profiles crossing the Gulf Stream and a table of the positions of the axis of the Stream along two tracks are given. Time series of the maximum velocity perpendicular to the ground track were computed for both arrays. It was found that there was a seasonal cycle in this time series with a maximum in November.

Published
1992

187. Crystal structure of periplasmic ABC transporter solute binding protein A7JW62 from Mannheimia haemolytica PHL213, Target EFI-511105, in complex with Myo-inositol

Author

Patskovsky, Y., primary, Toro, R., additional, Bhosle, R., additional, Al Obaidi, N., additional, Morisco, L.L., additional, Wasserman, S.R., additional, Chamala, S., additional, Attonito, J.D., additional, Scott Glenn, A., additional, Chowdhury, S., additional, Lafleur, J., additional, Hillerich, B., additional, Siedel, R.D., additional, Love, J., additional, Whalen, K.L., additional, Gerlt, J.A., additional, and Almo, S.C., additional

Published
2014
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188. Crystal structure of carbohydrate transporter solute binding protein Arad_9553 from Agrobacterium Radiobacter, Target EFI-511541, in complex with D-arabinose

Author

Patskovsky, Y., primary, Toro, R., additional, Bhosle, R., additional, Al Obaidi, N., additional, Morisco, L.L., additional, Wasserman, S.R., additional, Chamala, S., additional, Attonito, J.D., additional, Scott Glenn, A., additional, Chowdhury, S., additional, Lafleur, J., additional, Hillerich, B., additional, Siedel, R.D., additional, Love, J., additional, Whalen, K.L., additional, Gerlt, J.A., additional, and Almo, S.C., additional

Published
2014
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189. Crystal structure of carbohydrate transporter solute binding protein CAUR_1924 from Chloroflexus aurantiacus, Target EFI-511158, in complex with D-glucose

Author

Patskovsky, Y., primary, Toro, R., additional, Bhosle, R., additional, Al Obaidi, N., additional, Morisco, L.L., additional, Wasserman, S.R., additional, Chamala, S., additional, Attonito, J.D., additional, Scott Glenn, A., additional, Chowdhury, S., additional, Lafleur, J., additional, Hillerich, B., additional, Siedel, R.D., additional, Love, J., additional, Whalen, K.L., additional, Gerlt, J.A., additional, and Almo, S.C., additional

Published
2014
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190. Crystal structure of carbohydrate transporter solute binding protein VEIS_2079 from Verminephrobacter eiseniae EF01-2, TARGET EFI-511009, a complex with D-TALITOL

Author

Patskovsky, Y., primary, Toro, R., additional, Bhosle, R., additional, Al Obaidi, N., additional, Morisco, L.L., additional, Wasserman, S.R., additional, Chamala, S., additional, Attonito, J.D., additional, Scott Glenn, A., additional, Chowdhury, S., additional, Lafleur, J., additional, Hillerich, B., additional, Siedel, R.D., additional, Love, J., additional, Whalen, K.L., additional, Gerlt, J.A., additional, and Almo, S.C., additional

Published
2014
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191. CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM Rhodobacter sphaeroides (Rsph17029_2138, TARGET EFI-510205) WITH BOUND Glucuronate

Author

Yadava, U., primary, Vetting, M.W., additional, Al Obaidi, N.F., additional, Toro, R., additional, Morisco, L.L., additional, Benach, J., additional, Wasserman, S.R., additional, Attonito, J.D., additional, Scott Glenn, A., additional, Chamala, S., additional, Chowdhury, S., additional, Lafleur, J., additional, Love, J., additional, Seidel, R.D., additional, Whalen, K.L., additional, Gerlt, J.A., additional, and Almo, S.C., additional

Published
2014
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192. Crystal structure of 5-methylthioribose transporter solute binding protein TLET_1677 from Thermotoga lettingae TMO TARGET EFI-511109 in complex with 5-methylthioribose

Author

Patskovsky, Y., primary, Toro, R., additional, Bhosle, R., additional, Al obaidi, N., additional, Morisco, L.L., additional, Wasserman, S.R., additional, Chamala, S., additional, Attonito, J.D., additional, Scott glenn, A., additional, Chowdhury, S., additional, Lafleur, J., additional, Hillerich, B., additional, Siede, R.D., additional, Love, J., additional, Whalen, K.L., additional, Gerlt, J.A., additional, and Almo, S.C., additional

Published
2014
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193. Crystal structure of Molybdenum ABC transporter solute binding protein Vc_A0726 from Vibrio Cholerae, Target EFI-510913, in complex with tungstate

Author

Patskovsky, Y., primary, Toro, R., additional, Bhosle, R., additional, Al Obaidi, N., additional, Morisco, L.L., additional, Wasserman, S.R., additional, Chamala, S., additional, Attonito, J.D., additional, Scott Glenn, A., additional, Chowdhury, S., additional, Lafleur, J., additional, Hillerich, B., additional, Siedel, R.D., additional, Love, J., additional, Whalen, K.L., additional, Gerlt, J.A., additional, and Almo, S.C., additional

Published
2014
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194. Crystal structure of ribose transporter solute binding protein RHE_PF00037 from Rhizobium etli CFN 42, TARGET EFI-511357, in complex with D-ribose

Author

Patskovsky, Y., primary, Toro, R., additional, Bhosle, R., additional, Al Obaidi, N., additional, Morisco, L.L., additional, Wasserman, S.R., additional, Chamala, S., additional, Attonito, J.D., additional, Scott Glenn, A., additional, Chowdhury, S., additional, Lafleur, J., additional, Hillerich, B., additional, Siedel, R.D., additional, Love, J., additional, Whalen, K.L., additional, Gerlt, J.A., additional, and Almo, S.C., additional

Published
2014
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195. Crystal structure of abc transporter solute binding protein AVI_3567 from AGROBACTERIUM VITIS S4, TARGET EFI-510645, with bound D-mannitol

Author

Patskovsky, Y., primary, Toro, R., additional, Bhosle, R., additional, Al Obaidi, N., additional, Morisco, L.L., additional, Wasserman, S.R., additional, Chamala, S., additional, Attonito, J.D., additional, Scott Glenn, A., additional, Chowdhury, S., additional, Lafleur, J., additional, Hillerich, B., additional, Siedel, R.D., additional, Love, J., additional, Whalen, K.L., additional, Gerlt, J.A., additional, and Almo, S.C., additional

Published
2014
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196. Crystal structure of a TctC solute binding protein from Polaromonas (Bpro_3516, Target EFI-510338), no ligand

Author

Yadava, U., primary, Vetting, M.W., additional, Al Obaidi, N.F., additional, Toro, R., additional, Morisco, L.L., additional, Benach, J., additional, Wasserman, S.R., additional, Attonito, J.D., additional, Scott Glenn, A., additional, Chamala, S., additional, Chowdhury, S., additional, Lafleur, J., additional, Love, J., additional, Seidel, R.D., additional, Whalen, K.L., additional, Gerlt, J.A., additional, and Almo, S.C., additional

Published
2014
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197. Crystal structure of periplasmic solute binding protein ECA2210 from Pectobacterium atrosepticum SCRI1043, Target EFI-510858

Author

Patskovsky, Y., primary, Toro, R., additional, Bhosle, R., additional, Al Obaidi, N., additional, Morisco, L.L., additional, Wasserman, S.R., additional, Chamala, S., additional, Attonito, J.D., additional, Scott Glenn, A., additional, Chowdhury, S., additional, Lafleur, J., additional, Hillerich, B., additional, Siedel, R.D., additional, Love, J., additional, Whalen, K.L., additional, Gerlt, J.A., additional, and Almo, S.C., additional

Published
2014
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198. CRYSTAL STRUCTURE OF AN ABC TRANSPORTER SOLUTE BINDING PROTEIN (IPR025997) FROM CLOSTRIDIUM PHYTOFERMENTAS (Cphy_0583, TARGET EFI-511148) WITH BOUND L-RHAMNOSE

Author

Vetting, M.W., primary, Al Obaidi, N.F., additional, Toro, R., additional, Morisco, L.L., additional, Benach, J., additional, Wasserman, S.R., additional, Attonito, J.D., additional, Scott Glenn, A., additional, Chamala, S., additional, Chowdhury, S., additional, Lafleur, J., additional, Love, J., additional, Seidel, R.D., additional, Whalen, K.L., additional, Gerlt, J.A., additional, and Almo, S.C., additional

Published
2014
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199. CRYSTAL STRUCTURE OF AN ABC TRANSPORTER SOLUTE BINDING PROTEIN (IPR025997) FROM AGROBACTERIUM VITIS (Avi_5133, TARGET EFI-511220) WITH BOUND D-FUCOSE

Author

Vetting, M.W., primary, Al Obaidi, N.F., additional, Toro, R., additional, Morisco, L.L., additional, Benach, J., additional, Wasserman, S.R., additional, Attonito, J.D., additional, Scott Glenn, A., additional, Chamala, S., additional, Chowdhury, S., additional, Lafleur, J., additional, Love, J., additional, Seidel, R.D., additional, Whalen, K.L., additional, Gerlt, J.A., additional, and Almo, S.C., additional

Published
2014
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200. CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM PSEUDOALTEROMONAS ATLANTICA T6c (Patl_2292, TARGET EFI-510180) WITH BOUND SODIUM AND PYRUVATE

Author

Yadava, U., primary, Vetting, M.W., additional, Al Obaidi, N.F., additional, Toro, R., additional, Morisco, L.L., additional, Benach, J., additional, Wasserman, S.R., additional, Attonito, J.D., additional, Scott Glenn, A., additional, Chamala, S., additional, Chowdhury, S., additional, Lafleur, J., additional, Love, J., additional, Seidel, R.D., additional, Whalen, K.L., additional, Gerlt, J.A., additional, and Almo, S.C., additional

Published
2014
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