25,973 results on '"Sale P"'
Search Results
152. Quality of life instruments in atrial fibrillation: a systematic review of measurement properties
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Alicia Sale and Jessica Yu
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Atrial fibrillation ,Catheter ablation ,Quality of life ,Patient reported outcomes ,Psychometrics ,Computer applications to medicine. Medical informatics ,R858-859.7 - Abstract
Abstract Objectives To identify the most frequently used atrial fibrillation-specific quality of life (QoL) instruments across atrial fibrillation (AF) ablation studies and to perform a systematic review of the most frequently used instrument’s measurement properties. This study uses quality of life instruments as an overarching term for any patient reported outcome measure that assesses a person’s health related well-being, functional status, and disease related symptoms. Methods A literature mapping exercise was undergone to identify the most frequently used AF-specific QoL instruments across AF ablation studies published from 2016 to 2021. A systematic review of the most frequently used AF QoL instruments identified from the mapping exercise was performed using the COSMIN guidelines for systematic reviews of patient-reported outcome measurements. A systematic search was conducted in Ovid MEDLINE, Ovid Embase, Ovid PsycINFO, EBSCO CINAHL, and Cochrane CENTRAL. The search used variations of the keywords “atrial fibrillation”, “quality of life”, and “catheter ablation”. Results Forty-five instruments were identified via the literature mapping exercise. After excluding non-patient reported outcome instruments, non-AF specific instruments, and instruments appearing only once, six instruments were identified: AF Effect on QualiTy-of-Life (AFEQT), AF Severity Scale, Minnesota Living with Heart Failure Instrument, AF Quality of Life Instrument, Arrhythmia Specific instrument in Tachycardia and Arrhythmia (ASTA), and SCL (Arrhythmia Symptom Checklist, Frequency and Severity). A systematic review of these six AF-specific health related QoL instruments was performed. We screened 3221 articles and 17 studies were eligible for inclusion. Using the COSMIN guidelines, ASTA and AFEQT had the best ratings across measurement properties with both instruments having good ratings for instrument development and internal consistency. However, none of the 17 included articles assessed measurement error and cross-cultural validity. Conclusions AFEQT and ASTA had the strongest measurement properties but not all measurement properties were assessed. Considering the large number of indeterminate and insufficient ratings, future research should focus on cross-cultural validation, measurement error, responsiveness, and interpretability. This review summarizes the current evidence for AF QoL instruments across AF ablation studies and outlines areas for future research.
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- 2022
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153. Alternative approaches for creating a wealth index: the case of Mozambique
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Charfudin Sacoor, Humberto Munguambe, Regina Rabinovich, Francisco Saute, Aina Casellas, Saimado Imputiua, Carlos J Chaccour, Achla Marathe, KeXin Xie, Cassidy Rist, Xinwei Deng, Paula Ruiz-Castillo, Eldo Elobolobo, Victor Mutepa, Mussa Sale, Patricia Nicolas, Julia Montana, Edgar Jamisse, and Felisbela Materrula
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Medicine (General) ,R5-920 ,Infectious and parasitic diseases ,RC109-216 - Abstract
Introduction The wealth index is widely used as a proxy for a household’s socioeconomic position (SEP) and living standard. This work constructs a wealth index for the Mopeia district in Mozambique using data collected in year 2021 under the BOHEMIA (Broad One Health Endectocide-based Malaria Intervention in Africa) project.Methods We evaluate the performance of three alternative approaches against the Demographic and Health Survey (DHS) method based wealth index: feature selection principal components analysis (PCA), sparse PCA and robust PCA. The internal coherence between four wealth indices is investigated through statistical testing. Validation and an evaluation of the stability of the wealth index are performed with additional household income data from the BOHEMIA Health Economics Survey and the 2018 Malaria Indicator Survey data in Mozambique.Results The Spearman’s rank correlation between wealth index ventiles from four methods is over 0.98, indicating a high consistency in results across methods. Wealth rankings and households’ income show a strong concordance with the area under the curve value of ~0.7 in the receiver operating characteristic analysis. The agreement between the alternative wealth indices and the DHS wealth index demonstrates the stability in rankings from the alternative methods.Conclusions This study creates a wealth index for Mopeia, Mozambique, and shows that DHS method based wealth index is an appropriate proxy for the SEP in low-income regions. However, this research recommends feature selection PCA over the DHS method since it uses fewer asset indicators and constructs a high-quality wealth index.
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- 2023
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154. Factors that influence the activity of biomass-degrading enzymes in the presence of ionic liquids—a review
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Paul Wolski, Brian W. Blankenship, Athiyya Umar, Mica Cabrera, Blake A. Simmons, Kenneth L. Sale, and Ezinne C. Achinivu
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enzymes ,ionic liquids ,biorefineries ,cellulose ,lignin ,pretreament ,General Works - Abstract
Ionic liquids (ILs) are seen as a more sustainable alternative to volatile organic solvents that are accelerating innovations in many industries such as energy storage, separations, and bioprocessing. The ability to effectively deconstruct lignocellulosic biomass is a significant hurdle in the biorefining/bioprocessing industry and presents limitations towards the commercial production of bioproducts (such as biofuels, biomaterials, etc.). Certain ILs have been shown to promote effective lignin removal, cellulose recovery, and sugar yields from various biomass feedstocks such as corn stover, wheat straw, sugarcane bagasse, sorghum, switchgrass, miscanthus, poplar, pine, eucalyptus, and certain mixtures of municipal solid waste. However, these improvements are often counteracted by the limited biocompatibility of ILs, which results in an IL-induced reduction in enzyme activity and stability—an important downstream step in the conversion of biomass to biofuels/bioproducts. As a result, significant efforts have been made to discover and engineer compatible enzyme-IL systems and to improve our understanding on the effect that these ILs have on these systems. This review seeks to examine the impact of ionic liquids on enzymes involved in lignocellulosic biomass deconstruction, with a specific focus on their relevance in the context of pretreatment. Beyond presenting an overview of the ionic liquid pretreatment landscape, we outline the main factors that influence enzyme activity and stability in the presence of ILs This data is consolidated and analyzed to apply this body of knowledge towards new innovations that could lead to improvements in the processing of biomass to biofuels and bioproducts.
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- 2023
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155. Exploring the Perspectives and Experiences of Older Adults With Asthma and Chronic Obstructive Pulmonary Disease Toward Mobile Health: Qualitative Study
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Andrew Kouri, Samir Gupta, Sharon E Straus, and Joanna E M Sale
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Computer applications to medicine. Medical informatics ,R858-859.7 ,Public aspects of medicine ,RA1-1270 - Abstract
BackgroundThe use of mobile health (mHealth) in asthma and chronic obstructive pulmonary disease (COPD) is growing, and as the population ages, a greater number of older adults stand to benefit from mHealth-enhanced airway disease care. Though older adults are a heterogeneous population of health technology users, older age represents a potential barrier to health technology adoption, and there is currently a lack of knowledge on how older age influences mHealth use in asthma and COPD. ObjectiveIn this qualitative study, we sought to explore the experiences and perspectives of adults who were aged 65 years and older with asthma and COPD toward mHealth use. MethodsSemistructured individual interviews were conducted with adults who were aged 65 years and older with asthma or COPD and owned a smartphone. Applying phenomenological methodology, we analyzed interview transcripts in order to develop themes and propose an essential experience of mHealth use among older adults with airway disease. We then summarized our qualitative findings and proposed strategies to leverage our results in order to guide future research and implementation efforts targeting older adults’ use of airway mHealth. ResultsTwenty participants (mean age 79.8, SD 4.4 years) were interviewed. Participants described a central tension between (1) the perception that mHealth could help maintain independence throughout aging and (2) an apprehension toward the ways in which mHealth could negatively affect established health care experiences. Several elements of these 2 themes are absent from previous research focusing on younger adults with asthma and COPD. The individual elements of these 2 themes informed potential strategies to optimize future older adults’ use of asthma and COPD mHealth tools. ConclusionsFocusing on the perspectives and experiences of older adults with asthma and COPD in their use of mHealth identified novel understandings of health technology use in this important demographic in need of greater care. These lessons were translated into potential strategies that will need to be objectively evaluated in future airway mHealth research, development, and implementation efforts.
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- 2023
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156. External training load is associated with adaptation in bone and body composition over the course of a season in elite male footballers
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Ian Varley, Marcus Ward, Chris Thorpe, Nathan Beardsley, Julie Greeves, Craig Sale, and Chris Saward
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Bone ,Exercise ,Football ,Diseases of the musculoskeletal system ,RC925-935 - Abstract
This study examined the relationship between training load and changes in body composition and bone characteristics across a competitive season. Twenty senior male professional football players participated in this prospective longitudinal study. Participants underwent dual-energy X-ray absorptiometry (DXA) and peripheral quantitative computed tomography (pQCT) scans on four occasions across the study period, resulting in three phases of the season. Phase 1 (Scan 1-Scan 2: 6-weeks: pre-season), Phase 2 (Scan 2-Scan 3: 24-weeks: first part of the season), and Phase 3 (Scan 3-Scan 4: 13-weeks: second part of the season). External training load was quantified using GPS devices. In Phase 1 there was a significant increase (mean ± SE) in lean mass (from 66.0 ± 1.4 to 67.8 ± 1.4 kg) and a significant decrease in fat mass (from 11.5 ± 0.6 to 10.4 ± 0.6 kg). In Phase 2 there were significant increases in whole-body BMD (from 1.41 ± 0.02 to 1.43 ± 0.02 g/cm2), leg (from 1563 ± 43 to 1572 ± 43 g) and whole-body BMC (from 3807 ± 100 to 3860 ± 100 g), tibial mass (14 % site) (from 3.72 ± 0.08 to 3.74 ± 0.08 g), tibial strength (SSI(POL)14 % site) (from 2331 ± 78 to 2378 ± 78 mm3), and tibial density (4 % site) (from 382 ± 8 to 388 ± 8 mm3). In Phase 3, there was a significant decrease in tibial mass (14 % site) (from 3.74 ± 0.08 to 3.72 ± 0.08 g). Bootstrapped (BCa 95 % CI) Pearson correlations showed that in Phase 2 there were significant positive relationships between the increases in leg BMC and total distance (r = 0.44, 0.01–0.80), accelerations (r = 0.45, 0.08–0.75), and decelerations (r = 0.49, 0.07–0.83), and between the increase in tibial strength (SSI(POL)14 % site) and accelerations (r = 0.53, 0.19–0.80). High magnitude dynamic actions, such as accelerations and decelerations were positively correlated with changes in bone characteristics during a professional football season and should be considered by practitioners when prescribing exercise to induce bone adaptation.
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- 2023
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157. Correction to: The Prevalence of Menstrual Cycle Disorders and Menstrual Cycle-Related Symptoms in Female Athletes: A Systematic Literature Review
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Taim, Bernadette Cherianne, Ó Catháin, Ciarán, Renard, Michèle, Elliott-Sale, Kirsty Jayne, Madigan, Sharon, and Ní Chéilleachair, Niamh
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- 2023
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158. Trends in the Tissue Culture Techniques and the Synthesis of Bioactive Compounds in Eurycoma longifolia Jack—Current Status and Future Perspectives
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Sani Sale, Sreeramanan Subramaniam, and Mohamad Fadhli Mad’ Atari
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Eurycoma longifolia ,plant tissue culture ,elicitation ,biosynthesis ,bioactive compounds ,Botany ,QK1-989 - Abstract
Over the last two decades, there has been a concerted effort by researchers to mass propagate Eurycoma longifolia and improve the yield of its very important and sought-after anti-cancer and aphrodisiac bioactive compounds. To achieve this, various techniques have been used to mass propagate and improve the yield of these bioactive compounds in tissue cultures. These techniques include the optimization of media conditions and application of various types and combinations of plant growth regulators (PGRs). In addition, some elicitation techniques have been used to improve the synthesis of these bioactive compounds. However, in comparison with other herbal species with similar economic importance, many techniques have not been applied to E. longifolia. Adopting the most recent methodologies would ensure efficiency and sustainability in the in vitro production of bioactive compounds in E. longifolia. Therefore, in this review, we present an up-to-date record on the success stories in the tissue culture techniques and synthesis of bioactive compounds. In addition, we attempted to identify some of the missing links on the road to the effective and sustainable biotechnological utilization of this super important biological resource.
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- 2023
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159. Pharmacokinetic Drug–Drug Interaction Studies Between Trilaciclib and Midazolam, Metformin, Rifampin, Itraconazole, and Topotecan in Healthy Volunteers and Patients with Extensive-Stage Small-Cell Lung Cancer
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Li, Chao, Horton, Janet K., Sale, Mark, Curd, Laura, Goti, Vineet, Tao, Wenli, and Beelen, Andrew
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- 2022
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160. Physiological mechanisms of the impact of heat during pregnancy and the clinical implications: review of the evidence from an expert group meeting
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Samuels, Louisa, Nakstad, Britt, Roos, Nathalie, Bonell, Ana, Chersich, Matthew, Havenith, George, Luchters, Stanley, Day, Louise-Tina, Hirst, Jane E., Singh, Tanya, Elliott-Sale, Kirsty, Hetem, Robyn, Part, Cherie, Sawry, Shobna, Le Roux, Jean, and Kovats, Sari
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- 2022
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161. Fragility fracture patients with a history of prior fractures more likely to present with multiple risk factors: findings from a province-wide fracture liaison service
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Sujic, R., Yang, A., Ansari, H., Bogoch, E. R., Jain, R., Weldon, J., Elliot-Gibson, V., and Sale, J. E. M.
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- 2022
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162. Mechanisms of APOBEC3 mutagenesis in human cancer cells
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Petljak, Mia, Dananberg, Alexandra, Chu, Kevan, Bergstrom, Erik N., Striepen, Josefine, von Morgen, Patrick, Chen, Yanyang, Shah, Hina, Sale, Julian E., Alexandrov, Ludmil B., Stratton, Michael R., and Maciejowski, John
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- 2022
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163. A and F stars as probes of outer Galactic disc kinematics
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Harris, A., Drew, J. E., Farnhill, H. J., Monguió, M., Gebran, M., Wright, N. J., Drake, J. J., and Sale, S. E.
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Astrophysics - Astrophysics of Galaxies ,Astrophysics - Solar and Stellar Astrophysics - Abstract
Previous studies of the rotation law in the outer Galactic disc have mainly used gas tracers or clump giants. Here, we explore A and F stars as alternatives: these provide a much denser sampling in the outer disc than gas tracers and have experienced significantly less velocity scattering than older clump giants. This first investigation confirms the suitability of A stars in this role. Our work is based on spectroscopy of $\sim$ 1300 photometrically-selected stars in the red calcium-triplet region, chosen to mitigate against the effects of interstellar extinction. The stars are located in two low Galactic latitude sightlines, at longitudes $\ell = 118^{\circ}$, sampling strong Galactic rotation shear, and $\ell = 178^{\circ}$, near the Anticentre. With the use of Markov Chain Monte Carlo parameter fitting, stellar parameters and radial velocities are measured, and distances computed. The obtained trend of radial velocity with distance is inconsistent with existing flat or slowly rising rotation laws from gas tracers (Brand & Blitz 1993; Reid et al. 2014). Instead, our results fit in with those obtained by Huang et al. (2016) from disc clump giants that favoured rising circular speeds. An alternative interpretation in terms of spiral arm perturbation is not straight forward. We assess the role that undetected binaries in the sample and distance error may have in introducing bias, and show that the former is a minor factor. The random errors in our trend of circular velocity are within $\pm 5$ km s$^{-1}$.
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- 2018
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164. Introducing a Measurement Feedback System for Youth Mental Health: Predictors and Impact of Implementation in a Community Agency
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Rafaella Sale, Sarah Kate Bearman, Rebecca Woo, and Nichole Baker
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Measurement feedback systems (MFSs) that routinely collect and report client progress to mental health therapists have demonstrated beneficial impact on outcomes in numerous studies, with evidence that there is a dose-response relationship related to the implementation of the MFS. The current study examined the impact of MFS implementation (Implementation Index) on youth symptom outcomes separately by caregiver and youth self-report. Additionally, we tested the extent to which Implementation Index rates varied by individual therapists and clients, and whether therapist and client characteristics predicted MFS implementation. Methods: Administrative data (client charts, youth- and caregiver-reported Youth Outcome Questionnaires) for 229 youth (52.83% Latinx, 42.79% girls, M age = 10.33) treated during a 1-year period at a community mental health organization in Central Texas were analyzed using multi-level modeling. Caregiver-reported symptoms decreased faster for those with a higher MFS Implementation Index. Between-group differences among therapists accounted for a significant proportion of variance in the Implementation Index for caregiver report, whereas client differences accounted for most of the variance in the Implementation Index for youth self-report. Therapist trainee status predicted a significant increase in the Implementation Index for caregiver-report data. Youth symptom improvement as reported by caregivers varied with the extent of MFS implementation fidelity, and MFS implementation fidelity was higher for clients treated by trainees relative to staff therapists for caregiver report of symptoms.
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- 2021
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165. Baseline psychopathology and relationship to longitudinal functional outcome in attenuated and early first episode psychosis
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Burton, Cynthia Z, Tso, Ivy F, Carrión, Ricardo E, Niendam, Tara, Adelsheim, Steven, Auther, Andrea M, Cornblatt, Barbara A, Carter, Cameron S, Melton, Ryan, Sale, Tamara G, Taylor, Stephan F, and McFarlane, William R
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Schizophrenia ,Clinical Research ,Rehabilitation ,Pediatric ,Brain Disorders ,Mental Health ,Behavioral and Social Science ,Serious Mental Illness ,Clinical Trials and Supportive Activities ,Prevention ,Mental health ,Good Health and Well Being ,Adolescent ,Adult ,Disease Susceptibility ,Early Medical Intervention ,Female ,Follow-Up Studies ,Humans ,Longitudinal Studies ,Male ,Outcome Assessment ,Health Care ,Psychotic Disorders ,Risk ,Young Adult ,Clinical high risk ,Attenuated psychosis ,Positive symptoms ,Negative symptoms ,Functioning ,Medical and Health Sciences ,Psychology and Cognitive Sciences ,Psychiatry - Abstract
BackgroundAs efforts intensify to intervene early among those at risk for psychosis, examination of the relationship between presenting psychopathology and long-term functional outcome may guide treatment decision-making and offer a means to prevent or reduce chronic disability.MethodsData were collected through the Early Detection and Intervention for the Prevention of Psychosis Program (EDIPPP), a multisite national trial testing the efficacy of an early intervention for youth at risk of developing psychosis. Participants were followed prospectively and completed comprehensive evaluations at 6, 12, and 24 months, including the Structured Interview for Prodromal Syndromes (SIPS) and the Global Social and Role Functioning Scales. The present analyses included 327 participants and examined the relationships between baseline symptoms and longitudinal global social and role functioning using a linear mixed modeling approach.ResultsHigher baseline negative symptoms and deteriorated thought process predicted worse social and role functioning in the follow-up period. The effect of negative symptoms on social functioning, however, was moderated by positive symptoms, and the relationship between positive symptoms and social functioning changed over time. Baseline positive symptoms, distress, and level of symptom severity were not predictors of either social or role functioning.ConclusionsBaseline negative symptoms and thought disorder appear to predict functional outcome for up to two years among adolescents and young adults at risk for psychosis. Developing effective interventions to target these symptoms may be critical to promote functional recovery among those experiencing attenuated symptoms or a first episode of psychosis.
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- 2019
166. Learning with an algebra computer tutor: What type of hint isbest?
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Sale, Kyle and Muldner, Kasia
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Intelligent Tutoring Systems ,high-level andbottom-out hints - Abstract
While there is substantial evidence showing that assistanceprovided to students during problem-solving activitiesinfluences learning outcomes, it is not yet clear how to bestdesign educational technologies to maximize learning throughvarious types of assistance. One common type of assistancecorresponds to hints delivered by an educational technology.To date, however, there is little research on the impact ofdifferent types of hints, including high-level hints vs. specificbottom-out hints. Our research takes a step in filling this gap,through an experimental study with an intelligent tutoringsystem we implemented in the domain of algebra (N = 50).We did not find evidence that the type of hint, high level vs.bottom out, influenced learning, with both types of hintsproducing similar outcomes. We did, however, find supportfor the conclusion that the number of hints accessed interactedwith the type of hint to influence learning, and specifically,that accessing more hints was correlated with learning butonly in the high-level hint condition.
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- 2019
167. Clinicopathological Spectrum of Thrombocytopenia in Sangli District of Western MaharashtraA Cross-sectional Study
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Sheetal Maheshkumar Sale, Isha Bansal, Vaibhav Pandurang Mane, and Dhirajkumar Arun Mane
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anaemia ,dengue ,idiopathic thombocytopenic purpura ,low blood platelet count ,malaria ,Microbiology ,QR1-502 ,Chemistry ,QD1-999 - Abstract
Introduction: Thrombocytopenia is now a day’s common haematological finding with various aetiologies is the situation where, there is low blood platelet count. Aetiology for thrombocytopenia is multi factorial which makes the management challenging. Aim: To study the clinicopathological spectrum of thrombocytopenia in population of Sangli district, Maharashtra, India. Materials and Methods: A cross-sectional study was conducted in a tertiary care centre in Sangli district, Maharashtra, India, for a period of two years from July 2019 to June 2021. It included 920 patients with platelet count
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- 2022
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168. Comparative profiling of agr locus, virulence, and biofilm-production genes of human and ovine non-aureus staphylococci
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Elisa Azara, Carla Maria Longheu, Sonia Attene, Silvana Sanna, Marco Sale, Maria Filippa Addis, and Sebastiana Tola
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Non-aureus staphylococci ,Human ,Ovine ,Biofilm ,Adhesins ,Toxins ,Veterinary medicine ,SF600-1100 - Abstract
Abstract Background In a collaboration between animal and human health care professionals, we assessed the genetic characteristics shared by non-aureus staphylococci (NAS) infecting humans and dairy ewes to investigate their relatedness in a region concentrating half of the total National sheep stock. We examined by PCR 125 ovine and 70 human NAS for biofilm production, pyrogenic toxins, adhesins, autolysins genes, and accessory gene regulator (agr) locus. The microtiter plate assay (MPA) was used for the phenotypic screening of biofilm production. Ovine NAS included S. epidermidis, S. chromogenes, S. haemolyticus, S. simulans, S. caprae, S. warneri, S. saprophyticus, S. intermedius, and S. muscae. Human NAS included S. haemolyticus, S. epidermidis, S. hominis, S. lugdunensis, S. capitis, S. warneri, S. xylosus, S. pasteuri, and S. saprophyticus subsp. bovis. Results Phenotypically, 41 (32.8%) ovine and 24 (34.3%) human isolates were characterized as biofilm producers. Of the ovine isolates, 12 were classified as biofilm-producing while the remaining 29 as weak biofilm-producing. All 24 human isolates were considered weak biofilm-producing. Few S. epidermidis isolates harbored the icaA/D genes coding for the polysaccharide intercellular adhesin (PIA), while the bhp, aap, and embp genes coding biofilm accumulation proteins were present in both non-producing and biofilm-producing isolates. Fifty-nine sheep NAS (all S. epidermidis, 1 S. chromogenes, and 1 S. haemolyticus) and 27 human NAS (all S. epidermidis and 1 S. warneri) were positive for the agr locus: agr-3se (57.8%) followed by agr-1se (36.8%) predominated in sheep, while agr-1se (65.4%), followed by agr-2se (34.6%) predominated in humans. Concerning virulence genes, 40, 39.2, 47.2%, 52.8, 80 and 43.2% of the sheep isolates carried atlE, aae, sdrF, sdrG, eno and epbS respectively, against 37.1, 42.8, 32.8, 60, 100 and 100% of human isolates. Enterotoxins and tsst were not detected. Conclusions Considerable variation in biofilm formation ability was observed among NAS isolates from ovine and human samples. S. epidermidis was the best biofilm producer with the highest prevalence of adhesin-encoding genes.
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- 2022
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169. Rapid characterization of the activities of lignin-modifying enzymes based on nanostructure-initiator mass spectrometry (NIMS)
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Deng, Kai, Zeng, Jijiao, Cheng, Gang, Gao, Jian, Sale, Kenneth L, Simmons, Blake A, Singh, Anup K, Adams, Paul D, and Northen, Trent R
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Biochemistry and Cell Biology ,Biological Sciences ,Industrial Biotechnology ,Bioengineering ,Generic health relevance ,Lignin ,beta-Aryl ether ,Lignin-modifying enzymes ,NIMS ,Enzyme assays ,β-Aryl ether ,Chemical Engineering ,Biochemistry and cell biology ,Industrial biotechnology - Abstract
BackgroundProducing valuable fuels and chemicals from lignin is a key factor for making lignocellulosic biomass economically feasible; however, significant roadblocks exist due to our lack of detailed understanding of how lignin is enzymatically depolymerized and of the range of possible lignin fragments that can be produced. Development of suitable enzymatic assays for characterization of putative lignin active enzymes is an important step towards improving our understanding of the catalytic activities of relevant enzymes. Previously, we have successfully built an assay platform based on glycan substrates containing a charged perfluorinated tag and nanostructure-initiator mass spectrometry to study carbohydrate active enzymes, especially various glycosyl hydrolyses. Here, we extend this approach to develop a reliable and rapid assay to study lignin-modifying enzymes.ResultsTwo β-aryl ether bond containing model lignin dimer substrates, designed to be suitable for studying the activities of lignin-modifying enzymes (LMEs) by nanostructure-initiator mass spectrometry (NIMS), were successful synthesized. Small-angle neutron scattering experiments showed that these substrates form micelles in solution. Two LMEs, laccase from the polypore mushroom Trametes versicolor, and manganese peroxidase (MnP) from white rot fungus Nematoloma frowardii, were tested for catalytic activity against the two model substrates. We show that the reaction of laccase and MnP with phenolic substrate yields products that arise from the cleavage of the carbon-carbon single bond between the α-carbon and the adjacent aryl carbon, consistent with the mechanism for producing phenoxy radical as reaction intermediates. Reactions of the nonphenolic substrate with laccase, on the other hand, adopt a different pathway by producing an α-oxidation product; as well as the cleavage of the β-aryl ether bond. No cleavage of the carbon-carbon bond between the α-carbon and the aryl carbon was observed. To facilitate understanding of reaction kinetics, the reaction time course for laccase activity on the phenolic substrate (I) was generated by the simultaneous measurement of all products at different time points of the reaction. Withdrawal of only a small sample aliquot (0.2 μL at each time point) ensured minimum perturbation of the reaction. The time course can help us to understand the enzyme kinetics.ConclusionsA new assay procedure has been developed for studying lignin-modifying enzymes by nanostructure-initiator mass spectrometry. Enzyme assays of a laccase and a MnP on phenolic and nonphenolic β-aryl ether substrates revealed different primary reaction pathways due to the availability of the phenoxy radical intermediates. Our assay provides a wealth of information on bond cleavage events not available using conventional colorimetric assays and can easily be carried out in microliter volumes and the quantitative analysis of product formation and kinetics is rapidly achieved by NIMS. This is the first time that NIMS technology was applied to study the activities of lignin-modifying enzymes. Unlike other previous works, our use of amphiphilic guaiacylglycerol β-O-4 substrate (I) enables the formation of micelles. This approach helps avoid the re-polymerization of the resulting monomeric product. As a result, our assay can clearly demonstrate the degradation pathways of phenolic guaiacylglycerol β-O-4 type of molecules with laccase and MnP.
- Published
- 2018
170. The time scales of irreversibility in spontaneous brain activity are altered in obsessive compulsive disorder
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Davide Bernardi, David Shannahoff-Khalsa, Jeff Sale, Jon A. Wright, Luciano Fadiga, and David Papo
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spontaneous brain activity ,permutation entropy ,time-reversal symmetry ,time scales ,dynamical disease ,obsessive-compulsive disorder ,Psychiatry ,RC435-571 - Abstract
We study how obsessive-compulsive disorder (OCD) affects the complexity and time-reversal symmetry-breaking (irreversibility) of the brain resting-state activity as measured by magnetoencephalography (MEG). Comparing MEG recordings from OCD patients and age/sex matched control subjects, we find that irreversibility is more concentrated at faster time scales and more uniformly distributed across different channels of the same hemisphere in OCD patients than in control subjects. Furthermore, the interhemispheric asymmetry between homologous areas of OCD patients and controls is also markedly different. Some of these differences were reduced by 1-year of Kundalini Yoga meditation treatment. Taken together, these results suggest that OCD alters the dynamic attractor of the brain's resting state and hint at a possible novel neurophysiological characterization of this psychiatric disorder and how this therapy can possibly modulate brain function.
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- 2023
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171. Perspectives from research and practice: A survey on external load monitoring and bone in sport
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Reece Scott, Ruth James, Cleveland T. Barnett, Craig Sale, and Ian Varley
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external load ,elite sport ,bone load ,qualitative ,measuring devices ,Sports ,GV557-1198.995 - Abstract
IntroductionThere is limited information regarding the association between external load and estimated bone load in sport, which may be important due to the influence exercise can have on bone accrual and injury risk. The aim of this study was to identify external load measuring tools used by support staff to estimate bone load and assess if these methodologies were supported in research.MethodsA survey was comprised of 19 multiple choice questions and the option to elaborate on if/how they monitor external load and if/how they used them to estimate bone load. A narrative review was performed to assess how external load is associated to bone in research.ResultsParticipants were required to be working as support staff in applied sport. Support staff (n = 71) were recruited worldwide with the majority (85%) working with professional elite athletes. 92% of support staff monitored external load in their organisation, but only 28% used it to estimate bone load.DiscussionGPS is the most commonly used method to estimate bone load, but there is a lack of research assessing GPS metrics with bone load. Accelerometry and force plates were among the most prevalent methods used to assess external load, but a lack of bone specific measurements were reported by support staff. Further research exploring how external load relates to bone is needed as there is no consensus on which method of external load is best to estimate bone load in an applied setting.
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- 2023
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172. Current evidence shows no influence of women's menstrual cycle phase on acute strength performance or adaptations to resistance exercise training
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Lauren M. Colenso-Semple, Alysha C. D'Souza, Kirsty J. Elliott-Sale, and Stuart M. Phillips
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menstrual cycle ,resistance training ,hypertrophy ,strength ,exercise performance ,Sports ,GV557-1198.995 - Abstract
IntroductionThe bias towards excluding women from exercise science research is often due to the assumption that cyclical fluctuations in reproductive hormones influence resistance exercise performance and exercise-induced adaptations.MethodsHence, the purpose of this umbrella review was to examine and critically evaluate the evidence from meta-analyses and systematic reviews on the influence of menstrual cycle phase on acute performance and chronic adaptations to resistance exercise training (RET).ResultsWe observed highly variable findings among the published reviews on the ostensible effects of female sex hormones on relevant RET-induced outcomes, including strength, exercise performance, and hypertrophy.DiscussionWe highlight the importance of comprehensive menstrual cycle verification methods, as we noted a pattern of poor and inconsistent methodological practices in the literature. In our opinion, it is premature to conclude that short-term fluctuations in reproductive hormones appreciably influence acute exercise performance or longer-term strength or hypertrophic adaptations to RET.
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- 2023
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173. Multi-ancestry genetic study of type 2 diabetes highlights the power of diverse populations for discovery and translation
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Mahajan, Anubha, Spracklen, Cassandra N., Zhang, Weihua, Ng, Maggie C. Y., Petty, Lauren E., Kitajima, Hidetoshi, Yu, Grace Z., Rüeger, Sina, Speidel, Leo, Kim, Young Jin, Horikoshi, Momoko, Mercader, Josep M., Taliun, Daniel, Moon, Sanghoon, Kwak, Soo-Heon, Robertson, Neil R., Rayner, Nigel W., Loh, Marie, Kim, Bong-Jo, Chiou, Joshua, Miguel-Escalada, Irene, della Briotta Parolo, Pietro, Lin, Kuang, Bragg, Fiona, Preuss, Michael H., Takeuchi, Fumihiko, Nano, Jana, Guo, Xiuqing, Lamri, Amel, Nakatochi, Masahiro, Scott, Robert A., Lee, Jung-Jin, Huerta-Chagoya, Alicia, Graff, Mariaelisa, Chai, Jin-Fang, Parra, Esteban J., Yao, Jie, Bielak, Lawrence F., Tabara, Yasuharu, Hai, Yang, Steinthorsdottir, Valgerdur, Cook, James P., Kals, Mart, Grarup, Niels, Schmidt, Ellen M., Pan, Ian, Sofer, Tamar, Wuttke, Matthias, Sarnowski, Chloe, Gieger, Christian, Nousome, Darryl, Trompet, Stella, Long, Jirong, Sun, Meng, Tong, Lin, Chen, Wei-Min, Ahmad, Meraj, Noordam, Raymond, Lim, Victor J. Y., Tam, Claudia H. T., Joo, Yoonjung Yoonie, Chen, Chien-Hsiun, Raffield, Laura M., Lecoeur, Cécile, Prins, Bram Peter, Nicolas, Aude, Yanek, Lisa R., Chen, Guanjie, Jensen, Richard A., Tajuddin, Salman, Kabagambe, Edmond K., An, Ping, Xiang, Anny H., Choi, Hyeok Sun, Cade, Brian E., Tan, Jingyi, Flanagan, Jack, Abaitua, Fernando, Adair, Linda S., Adeyemo, Adebowale, Aguilar-Salinas, Carlos A., Akiyama, Masato, Anand, Sonia S., Bertoni, Alain, Bian, Zheng, Bork-Jensen, Jette, Brandslund, Ivan, Brody, Jennifer A., Brummett, Chad M., Buchanan, Thomas A., Canouil, Mickaël, Chan, Juliana C. N., Chang, Li-Ching, Chee, Miao-Li, Chen, Ji, Chen, Shyh-Huei, Chen, Yuan-Tsong, Chen, Zhengming, Chuang, Lee-Ming, Cushman, Mary, Das, Swapan K., de Silva, H. Janaka, Dedoussis, George, Dimitrov, Latchezar, Doumatey, Ayo P., Du, Shufa, Duan, Qing, Eckardt, Kai-Uwe, Emery, Leslie S., Evans, Daniel S., Evans, Michele K., Fischer, Krista, Floyd, James S., Ford, Ian, Fornage, Myriam, Franco, Oscar H., Frayling, Timothy M., Freedman, Barry I., Fuchsberger, Christian, Genter, Pauline, Gerstein, Hertzel C., Giedraitis, Vilmantas, González-Villalpando, Clicerio, González-Villalpando, Maria Elena, Goodarzi, Mark O., Gordon-Larsen, Penny, Gorkin, David, Gross, Myron, Guo, Yu, Hackinger, Sophie, Han, Sohee, Hattersley, Andrew T., Herder, Christian, Howard, Annie-Green, Hsueh, Willa, Huang, Mengna, Huang, Wei, Hung, Yi-Jen, Hwang, Mi Yeong, Hwu, Chii-Min, Ichihara, Sahoko, Ikram, Mohammad Arfan, Ingelsson, Martin, Islam, Md Tariqul, Isono, Masato, Jang, Hye-Mi, Jasmine, Farzana, Jiang, Guozhi, Jonas, Jost B., Jørgensen, Marit E., Jørgensen, Torben, Kamatani, Yoichiro, Kandeel, Fouad R., Kasturiratne, Anuradhani, Katsuya, Tomohiro, Kaur, Varinderpal, Kawaguchi, Takahisa, Keaton, Jacob M., Kho, Abel N., Khor, Chiea-Chuen, Kibriya, Muhammad G., Kim, Duk-Hwan, Kohara, Katsuhiko, Kriebel, Jennifer, Kronenberg, Florian, Kuusisto, Johanna, Läll, Kristi, Lange, Leslie A., Lee, Myung-Shik, Lee, Nanette R., Leong, Aaron, Li, Liming, Li, Yun, Li-Gao, Ruifang, Ligthart, Symen, Lindgren, Cecilia M., Linneberg, Allan, Liu, Ching-Ti, Liu, Jianjun, Locke, Adam E., Louie, Tin, Luan, Jian’an, Luk, Andrea O., Luo, Xi, Lv, Jun, Lyssenko, Valeriya, Mamakou, Vasiliki, Mani, K. Radha, Meitinger, Thomas, Metspalu, Andres, Morris, Andrew D., Nadkarni, Girish N., Nadler, Jerry L., Nalls, Michael A., Nayak, Uma, Nongmaithem, Suraj S., Ntalla, Ioanna, Okada, Yukinori, Orozco, Lorena, Patel, Sanjay R., Pereira, Mark A., Peters, Annette, Pirie, Fraser J., Porneala, Bianca, Prasad, Gauri, Preissl, Sebastian, Rasmussen-Torvik, Laura J., Reiner, Alexander P., Roden, Michael, Rohde, Rebecca, Roll, Kathryn, Sabanayagam, Charumathi, Sander, Maike, Sandow, Kevin, Sattar, Naveed, Schönherr, Sebastian, Schurmann, Claudia, Shahriar, Mohammad, Shi, Jinxiu, Shin, Dong Mun, Shriner, Daniel, Smith, Jennifer A., So, Wing Yee, Stančáková, Alena, Stilp, Adrienne M., Strauch, Konstantin, Suzuki, Ken, Takahashi, Atsushi, Taylor, Kent D., Thorand, Barbara, Thorleifsson, Gudmar, Thorsteinsdottir, Unnur, Tomlinson, Brian, Torres, Jason M., Tsai, Fuu-Jen, Tuomilehto, Jaakko, Tusie-Luna, Teresa, Udler, Miriam S., Valladares-Salgado, Adan, van Dam, Rob M., van Klinken, Jan B., Varma, Rohit, Vujkovic, Marijana, Wacher-Rodarte, Niels, Wheeler, Eleanor, Whitsel, Eric A., Wickremasinghe, Ananda R., van Dijk, Ko Willems, Witte, Daniel R., Yajnik, Chittaranjan S., Yamamoto, Ken, Yamauchi, Toshimasa, Yengo, Loïc, Yoon, Kyungheon, Yu, Canqing, Yuan, Jian-Min, Yusuf, Salim, Zhang, Liang, Zheng, Wei, Raffel, Leslie J., Igase, Michiya, Ipp, Eli, Redline, Susan, Cho, Yoon Shin, Lind, Lars, Province, Michael A., Hanis, Craig L., Peyser, Patricia A., Ingelsson, Erik, Zonderman, Alan B., Psaty, Bruce M., Wang, Ya-Xing, Rotimi, Charles N., Becker, Diane M., Matsuda, Fumihiko, Liu, Yongmei, Zeggini, Eleftheria, Yokota, Mitsuhiro, Rich, Stephen S., Kooperberg, Charles, Pankow, James S., Engert, James C., Chen, Yii-Der Ida, Froguel, Philippe, Wilson, James G., Sheu, Wayne H. H., Kardia, Sharon L. R., Wu, Jer-Yuarn, Hayes, M. Geoffrey, Ma, Ronald C. W., Wong, Tien-Yin, Groop, Leif, Mook-Kanamori, Dennis O., Chandak, Giriraj R., Collins, Francis S., Bharadwaj, Dwaipayan, Paré, Guillaume, Sale, Michèle M., Ahsan, Habibul, Motala, Ayesha A., Shu, Xiao-Ou, Park, Kyong-Soo, Jukema, J. Wouter, Cruz, Miguel, McKean-Cowdin, Roberta, Grallert, Harald, Cheng, Ching-Yu, Bottinger, Erwin P., Dehghan, Abbas, Tai, E-Shyong, Dupuis, Josée, Kato, Norihiro, Laakso, Markku, Köttgen, Anna, Koh, Woon-Puay, Palmer, Colin N. A., Liu, Simin, Abecasis, Goncalo, Kooner, Jaspal S., Loos, Ruth J. F., North, Kari E., Haiman, Christopher A., Florez, Jose C., Saleheen, Danish, Hansen, Torben, Pedersen, Oluf, Mägi, Reedik, Langenberg, Claudia, Wareham, Nicholas J., Maeda, Shiro, Kadowaki, Takashi, Lee, Juyoung, Millwood, Iona Y., Walters, Robin G., Stefansson, Kari, Myers, Simon R., Ferrer, Jorge, Gaulton, Kyle J., Meigs, James B., Mohlke, Karen L., Gloyn, Anna L., Bowden, Donald W., Below, Jennifer E., Chambers, John C., Sim, Xueling, Boehnke, Michael, Rotter, Jerome I., McCarthy, Mark I., and Morris, Andrew P.
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- 2022
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174. Patients experience a need for informal care after a fragility fracture
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Sale, Joanna E. M., Frankel, Lucy, Yu, Winnie, Paiva, Julia, Saini, Jessica, Hui, Sean, Bogoch, Earl, and Meadows, Lynn
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- 2022
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175. Development of a genetic algorithm and NONMEM workbench for automating and improving population pharmacokinetic/pharmacodynamic model selection
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Ismail, Mohamed, Sale, Mark, Yu, Yifan, Pillai, Nikhil, Liu, Sihang, Pflug, Beth, and Bies, Robert
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- 2022
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176. Effect of the perception of breakfast consumption on subsequent appetite and energy intake in healthy males
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Slater, Tommy, Mode, William J. A., Hough, John, James, Ruth M., Sale, Craig, James, Lewis J., and Clayton, David J.
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- 2022
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177. Quality of life instruments in atrial fibrillation: a systematic review of measurement properties
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Sale, Alicia and Yu, Jessica
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- 2022
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178. Comparative profiling of agr locus, virulence, and biofilm-production genes of human and ovine non-aureus staphylococci
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Azara, Elisa, Longheu, Carla Maria, Attene, Sonia, Sanna, Silvana, Sale, Marco, Addis, Maria Filippa, and Tola, Sebastiana
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- 2022
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179. The role of analytic direction in qualitative research
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Sale, Joanna E. M.
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- 2022
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180. Motor training is improved by concurrent application of slow oscillating transcranial alternating current stimulation to motor cortex
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Sale, Martin V. and Kuzovina, Anastasiia
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- 2022
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181. Population pharmacokinetic modeling and simulations of berotralstat for prophylactic treatment of attacks of hereditary angioedema
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Amanda Mathis, Mark Sale, Melanie Cornpropst, William P. Sheridan, and Shu Chin Ma
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Therapeutics. Pharmacology ,RM1-950 ,Public aspects of medicine ,RA1-1270 - Abstract
Abstract Hereditary angioedema (HAE) is an autosomal dominant disorder characterized by recurrent episodes of swelling of the skin, larynx, gastrointestinal tract, genitals, and extremities that can be disruptive to patient quality of life. Dysregulation of plasma kallikrein activity leads to increased production and accumulation of bradykinin in HAE and causes attacks of angioedema. Plasma kallikrein is a serine protease essential for the formation of bradykinin. Berotralstat is a potent, highly selective, orally bioavailable small‐molecule plasma kallikrein inhibitor that has been approved to prevent attacks of HAE in adults and children 12 years of age and older. Population pharmacokinetic (PK) analyses were conducted to describe the PK of berotralstat (BCX7353; Orladeyo™) and to evaluate the covariates that may explain variability in PK. The PK of berotralstat were characterized by population PK modeling of data from 13 clinical studies and a total of 771 healthy subjects and patients with HAE. The PK profile was well described by a three‐compartment model with first‐order absorption including an absorption lag time and linear elimination. Among the covariates tested, the effects of bilirubin and food were found not to be clinically significant and were removed from the model. Covariate analysis indicated significant effects of dose on bioavailability and weight on berotralstat clearance and volume. Despite the covariate effect of weight, simulations in adolescents and adults who were underweight, low weight, and overweight demonstrated similar predicted exposures to those observed at therapeutic doses in a clinical trial. Therefore, no dose adjustment is required in these HAE patient subpopulations.
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- 2022
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182. Molecular analysis of bio-makers of Chloroquine resistance in Plasmodium falciparum isolate from gombe local government area, Gombe State, Nigeria
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Ismail Muhammad, Pukuma Sale, Muhammad Salisu, Tanko Muhammad, Bala Abubakar, Augustine Maidala, and Enock Nuwanyada
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pcrt ,sensitivity ,molecular makers ,single nucleotide polymorphism ,Medicine - Abstract
Chloroquine was one of the most cheapest and effective chemotherapeutic drugs for Plasmodium falciparum-malaria, but for a long, the drug has been officially withdrawn in almost all malaria-endemic countries including Nigeria, due to the development of resistance by the parasite. Withdrawal of the drug may make the drug regains its efficacy. Therefore, this study aimed to determine the presence of Biomarkers associated with chloroquine resistance from Gombe Local Government Area, Gombe State, Nigeria after its withdrawal in 2005. Twenty hundred blood samples were collected from consented study subjects and analysed using Microscopy, RDT and PCR. DNA was extracted using Quick-DNA™ Miniprep (No. D4069), Purity and Concentration of the DNA were determined using Nanodrop Spectrophotometer. 57 true positive samples were selected for molecular analysis. Nested PCR was used to amplify the required codon (C72S, M74I, K76T and N75E) position of PCRT the gene of P. falciparum. Both Primary and Secondary PCR was carried out. The PCR products were subjected to electrophoresis in 2% agarose and stained with ethidium bromide. The amplicons were purified and sequenced, after which the sequenced products were subjected to BLAST software. Single Nucleotide Polymorphism was recorded from C72S and K76T with a prevalence of 05(8.80%) and 46(80.70%) respectively. Confirmed biomarkers of Chloroquine resistance are still present in P. falciparum isolate from Gombe L.G.A.
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- 2022
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183. The role of analytic direction in qualitative research
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Joanna E. M. Sale
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Analytic direction ,Qualitative research ,Data analysis ,Methodological rigour ,Critical appraisal ,Medicine (General) ,R5-920 - Abstract
Abstract Background The literature on qualitative data analysis mostly concerns analyses pertaining to an individual research question and the organization of data within that research question. Few authors have written about the entire qualitative dataset from which multiple and separate analyses could be conducted and reported. The concept of analytic direction is a strategy that can assist qualitative researchers in deciding which findings to highlight within a dataset. The objectives of this paper were to: 1) describe the importance of analytic direction in qualitative research, and 2) provide a working example of the concept of analytic direction. Methods A qualitative dataset from one of the author’s research programs was selected for review. Ten potential analytic directions were identified after the initial phenomenological analysis was conducted. Three analytic directions based on the same coding template but different content areas of the data were further developed using phenomenological analysis (n = 2) and qualitative description (n = 1) and are the focus of this paper. Development and selection of these three analytic directions was determined partially relying on methodological criteria to promote rigour including a comprehensive examination of the data, the use of multiple analysts, direct quotations to support claims, negative case analysis, and reflexivity. Results The three analytic directions addressed topics within the scope of the overall research question. Each analytic direction had its own central point or story line and each highlighted a different perspective or voice. The use of an inductive and deductive approach to analysis and how the role of theory was integrated varied in each analytic direction. Conclusions The concept of analytic direction enables researchers to organize their qualitative datasets in order to tell different and unique “stories”. The concept relies upon, and promotes, the conduct of rigourous qualitative research.
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- 2022
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184. Singular vector formulas for Verma modules of simple Lie superalgebras
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Sale, Thomas
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Mathematics - Representation Theory - Abstract
For a simple Lie superalgebra of type BDFG, we give explicit formulas for singular vectors in a Verma module of highest weight $\lambda - \rho$, which have weight $s_{\gamma}\lambda - \rho$ for certain positive non-isotropic roots $\gamma.$ This implies the existence of a nonzero homomorphism between the corresponding Verma modules., Comment: version 3, 16 pages, title change, to appear in J. Algebra
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- 2017
185. Active Disassembly and Reassembly of Actin Networks Induces Distinct Biphasic Mechanics
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Gurmessa, Bekele J., Bitten, Nicholas, Nguyen, Dan T., Ross, Jennifer L., Sale, Omar A., Das, Moumita, and Robertson-Anderson, Rae M.
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Physics - Biological Physics ,Condensed Matter - Soft Condensed Matter ,Quantitative Biology - Subcellular Processes - Abstract
Actin is a key component of the cytoskeleton, which plays central roles in cell motility, division, growth, and tensile strength. To enable this wide range of transient mechanical processes and properties, networks of actin filaments continuously disassemble and reassemble via active de/re-polymerization. However, the question remains as to how de/re-polymerization kinetics of individual actin filaments translate to time-varying mechanics of dis/re-assembling networks. To address this question, to ultimately elucidate the molecular mechanisms that enable cells to exhibit a myriad of transitory mechanical properties, we couple time-resolved active microrheology with microfluidics to measure the time-varying viscoelastic moduli of entangled and crosslinked actin networks during chemically-triggered network disassembly and reassembly. We also develop a corresponding mathematical model that relates the time-evolution of filament length to the resulting time-dependent storage moduli of evolving networks. During disassembly, we find that the moduli exhibit two distinct exponential decays, with experimental time constants of $\sim$169 and $\sim$47 min, which we show arises from a phase transition from a rigid percolated network to a non-rigid regime occurring after $\sim$90 min. During reassembly, measured moduli exhibit linear increase with time for $\sim$90 min, after which steady-state values are achieved. Our theoretical model shows that reassembly mechanics are dominated by elongation kinetics, and that elongation rates are much slower than has been recently assumed. Our measurements shed much needed light onto how polymerization kinetics map to time-varying mechanics of actively evolving cytoskeleton networks, and provide a powerful platform for studying other active and dynamic systems currently under intense investigation., Comment: 15 pages, 5 figures
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- 2017
186. Large-scale three-dimensional Gaussian process extinction mapping
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Sale, S. E. and Magorrian, J.
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Astrophysics - Instrumentation and Methods for Astrophysics ,Astrophysics - Astrophysics of Galaxies - Abstract
Gaussian processes are the ideal tool for modelling the Galactic ISM, combining statistical flexibility with a good match to the underlying physics. In an earlier paper we outlined how they can be employed to construct three-dimensional maps of dust extinction from stellar surveys. Gaussian processes scale poorly to large datasets though, which put the analysis of realistic catalogues out of reach. Here we show how a novel combination of the Expectation Propagation method and certain sparse matrix approximations can be used to accelerate the dust mapping problem. We demonstrate, using simulated Gaia data, that the resultant algorithm is fast, accurate and precise. Critically, it can be scaled up to map the Gaia catalogue., Comment: 15 pages, 6 figures, submitted for publication in MNRAS
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- 2017
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187. Outer automorphism groups of right-angled Coxeter groups are either large or virtually abelian
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Sale, Andrew and Susse, Tim
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Mathematics - Group Theory - Abstract
We generalise the notion of a separating intersection of links (SIL) to give necessary and sufficient criteria on the defining graph $\Gamma$ of a right-angled Coxeter group $W_\Gamma$ so that its outer automorphism group is large: that is, it contains a finite index subgroup that admits the free group $F_2$ as a quotient. When $Out(W_\Gamma)$ is not large, we show it is virtually abelian. We also show that the same dichotomy holds for the outer automorphism groups of graph products of finite abelian groups. As a consequence, these groups have property (T) if and only if they are finite, or equivalently $\Gamma$ contains no SIL., Comment: 18 pages, 2 figures. Comments welcome
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- 2017
188. Investigating the Efficacy of an 18-Week Postpartum Rehabilitation and Physical Development Intervention on Occupational Physical Performance and Musculoskeletal Health in UK Servicewomen: Protocol for an Independent Group Study Design
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Kirsty Jayne Elliott-Sale, Emma Louise Bostock, Thea Jackson, Sophie Louise Wardle, Thomas James O'Leary, Julie Patricia Greeves, and Craig Sale
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Medicine ,Computer applications to medicine. Medical informatics ,R858-859.7 - Abstract
BackgroundPostpartum women are at an increased risk of pelvic floor dysfunction, musculoskeletal injury, and poor psychological health and have reduced physical fitness compared to before pregnancy. There is no formal, evidence-based rehabilitation and physical development program for returning UK servicewomen to work following childbirth. ObjectiveThis study aims to examine the efficacy of a rehabilitation and physical development intervention for returning postpartum UK servicewomen to occupational fitness. MethodsEligible servicewomen will be assigned to a training or control group in a nonrandomized controlled trial 6 weeks after childbirth. Group allocation will be based on the location of standard pregnancy and postpartum care. The control group will receive standard care, with no prescribed intervention. The training group will start an 18-week core and pelvic health rehabilitation program 6 weeks post partum and a 12-week resistance and high-intensity interval training program 12 weeks post partum. All participants will attend 4 testing sessions at 6, 12, 18, and 24 weeks post partum for the assessment of occupational physical performance, pelvic health, psychological well-being, quality of life, and musculoskeletal health outcomes. Occupational physical performance tests will include vertical jump, mid-thigh pull, seated medicine ball throw, and a timed 2-km run. Pelvic health tests will include the Pelvic Organ Prolapse Quantification system, the PERFECT (power, endurance, repetitions, fast, every contraction timed) scheme for pelvic floor strength, musculoskeletal physiotherapy assessment, the Pelvic Floor Distress Inventory–20 questionnaire, and the International Consultation on Incontinence Questionnaire–Vaginal Symptoms. Psychological well-being and quality of life tests will include the World Health Organization Quality of Life questionnaire and the Edinburgh Postnatal Depression Scale. Musculoskeletal health outcomes will include body composition; whole-body areal bone mineral density; tibial volumetric bone mineral density, geometry, and microarchitecture; patella tendon properties; muscle architecture; muscle protein and collagen turnover; and muscle mass and muscle breakdown. Data will be analyzed using linear mixed-effects models, with participants included as random effects, and group and time as fixed effects to assess within- and between-group differences over time. ResultsThis study received ethical approval in April 2019 and recruitment started in July 2019. The study was paused in March 2020 owing to the COVID-19 pandemic. Recruitment restarted in May 2021. The results are expected in September 2022. ConclusionsThis study will inform the best practice for the safe and optimal return of postpartum servicewomen to physically and mentally demanding jobs. Trial RegistrationClinicalTrials.gov NCT04332757; https://clinicaltrials.gov/ct2/show/NCT04332757 International Registered Report Identifier (IRRID)DERR1-10.2196/32315
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- 2022
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189. Social Network Analysis: An Example of Fusion between Quantitative and Qualitative Methods
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Yousefi Nooraie, Reza, Sale, Joanna E. M., Marin, Alexandra, and Ross, Lori E.
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A quantitative approach to social network analysis involves the application of mathematical and statistical techniques and graphical presentation of results. Nonetheless--as with all sciences--subjectivity is an integral aspect of network analysis, manifested in the selection of measures to describe connection patterns and actors' positions (e.g., choosing a centrality indicator), in the visualization of social structure in graphs, and in translating numbers into words (telling the story). Here, we use network research as an example to illustrate how quantitative and qualitative approaches, techniques, and data are mixed along a continuum of fusion between quantitative and qualitative realms.
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- 2020
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190. The Effect of Assistance on Learning and Affect in an Algebra Tutor
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Borracci, Giuliana, Gauthier, Erica, Jennings, Jay, Sale, Kyle, and Muldner, Kasia
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We investigated the impact of assistance on learning and affect during problem-solving activities with a computer tutor we built using the Cognitive Tutor Authoring Tools framework. The tutor delivered its primary form of assistance in the form of worked-out examples. We manipulated the level of assistance the examples in the tutor provided, by having similar problem-example pairs in one version of the tutor (high-assistance condition) and reduced similarity problem-example pairs in the other version (reduced-assistance condition). The reduced-assistance condition resulted in significantly higher learning, without increasing negative affect like frustration.
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- 2020
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191. Bone mineral density in high-level endurance runners: Part B—genotype-dependent characteristics
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Herbert, A. J., Williams, A. G., Lockey, S. J., Erskine, R. M., Sale, C., Hennis, P. J., Day, S. H., and Stebbings, G. K.
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- 2022
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192. Perspectives of patients with depression and chronic pain about bone health after a fragility fracture: A qualitative study
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Joanna E. M. Sale, Monique Gignac, Lucy Frankel, Stephen Thielke, Earl Bogoch, Victoria Elliot‐Gibson, Gillian Hawker, and Larry Funnell
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bone health ,chronic pain ,depression ,fragility fracture ,patient perspective ,Medicine (General) ,R5-920 ,Public aspects of medicine ,RA1-1270 - Abstract
Abstract Background Compromised bone health is often associated with depression and chronic pain. Objective To examine: (1) the experience of existing depression and chronic nonfracture pain in patients with a fragility fracture; and (2) the effects of the fracture on depression and pain. Design A phenomenological study guided by Giorgi's analytical procedures. Setting and Participants Fracture patients who reported taking prescription medication for one or more comorbidities, excluding compromised bone health. Main Variables Studied Patients were interviewed within 6 weeks of their fracture, and 1 year later. Interview questions addressed the recent fracture and patients' experience with bone health and their other health conditions, such as depression and chronic pain, including the medications taken for these conditions. Results Twenty‐six patients (5 men, 21 women) aged 45–84 years old with hip (n = 5) and nonhip (n = 21) fractures were recruited. Twenty‐one participants reported depression and/or chronic nonfracture pain, of which seven reported having both depression and chronic pain. Two themes were consistent, based on our analysis: (1) depression and chronic pain overshadowed attention to bone health; and (2) the fracture exacerbated reported experiences of existing depression and chronic pain. Conclusion Experiences with depression and pain take priority over bone health and may worsen as a result of the fracture. Health care providers treating fragility fractures might ask patients about depression and pain and take appropriate steps to address patients' more general emotional and physical state. Patient Contribution A patient representative was involved in the study conception, data interpretation and manuscript writing.
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- 2022
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193. Post-cardiopulmonary bypass longitudinal strain provides higher prognostic ability than baseline strain or change in strain
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Brett J Wakefield, Amanda S Artis, Andrej Alfirevic, Shiva Sale, and Andra E Duncan
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aortic valve replacement ,atrial fibrillation ,global longitudinal strain ,myocardial deformation ,prolonged hospitalization ,transesophageal echocardiography ,Anesthesiology ,RD78.3-87.3 ,Diseases of the circulatory (Cardiovascular) system ,RC666-701 - Abstract
Context: Global longitudinal strain (GLS) measured by speckle-tracking echocardiography demonstrates excellent prognostic ability in predicting major adverse cardiac events after cardiac surgery. However, the optimal timing of intraoperative GLS measurement that provides the best prognostic value is unclear. Aim: Our goal was to evaluate whether GLS measured prior to cardiopulmonary bypass (pre-CPB GLS), following CPB (post-CPB GLS), or change in GLS provides the strongest association with postoperative complications. Setting and Design: Post hoc analysis of prospectively collected data from a clinical trial (NCT01187329). 72 patients with aortic stenosis undergoing elective AVR ± coronary artery bypass grafting between January 2011 and August 2013. Material and Methods: Myocardial deformation analysis from standardized transesophageal echocardiographic examinations were performed after anesthetic induction and chest closure. We evaluated the association between pre-CPB GLS, post-CPB GLS, and change in GLS (percent change from pre-CPB baseline) with postoperative atrial fibrillation and hospitalization >7 days. The association of post-CPB GLS with duration of mechanical ventilation, N-terminal pro-BNP (NT-proBNP) and troponin T were also assessed. Statistical Analysis: Multivariable logistic regression. Results: Risk-adjusted odds (OR[97.5%CI] of prolonged hospitalization increased an estimated 27% (1.27[1.01 to 1.59];Padj =0.035) per 1% decrease in absolute post-CPB GLS. Mean[98.3%CI] NT-proBNP increased 98.4[20 to 177]pg/mL; Padj =0.008), per 1% decrease in post-CPB GLS. Pre-CPB GLS or change in GLS were not associated with any outcomes. Conclusions: Post-CPB GLS provides the best prognostic value in predicting postoperative outcomes. Measuring post-CPB GLS may improve risk stratification and assist in future study design and patient outcome research.
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- 2022
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194. Magnitude of undernutrition and its association with dietary diversity among older persons in Ethiopia: a systematic review and meta-analysis, 2023
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Getachew Sale Mezgebu, Legesse Petros, Etaferaw Alemayew, Gashaw Abebaw, and Fentaw Wassie Feleke
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Dietary diversity ,Malnutrition ,Meta-analysis ,Older persons ,Systematic review ,Nutrition. Foods and food supply ,TX341-641 ,Medicine - Abstract
Undernutrition in elders remains under-detected, under-treated, and under-resourced and leads to further weight loss, increased infections, and delay in recovery from illness as well as increased hospital admissions and length of stay. The reports of the findings were fragmented and inconsistent in Ethiopia. Therefore, the main objective of this meta-analysis was to estimate the pooled prevalence of undernutrition and its association with dietary diversity among older persons in Ethiopia. Online databases (Medline, PubMed, Scopus, and Science Direct), Google, Google Scholar, and other grey literature were used to search articles until the date of publication. The Preferred Reporting Items for Systematic Reviews and Meta-Analyses guideline was followed. The random effect model was used to estimate the pooled prevalence; whereas subgroup analysis and meta-regression were performed to identify the probable source of heterogeneity using Stata version 14.0 software. Out of 522 studies accessed, 14 met our criteria and were included in the study. A total of 7218 older people (aged above 60 years old) were included in the study. The pooled proportion of undernutrition among older persons in Ethiopia was 20⋅6 % (95 % CI 17⋅3, 23⋅8). Elders who consumed low dietary diversity scores were strongly associated with undernutrition among older persons. Therefore, promoting appropriate intervention strategies for elders to improve dietary diversity practices and nutritional status is crucial.
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- 2023
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195. Perspectives and experiences of the first geriatricians trained in Canada.
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Eric Kai-Chung Wong, Alexander Day, Maria Zorzitto, and Joanna E M Sale
- Subjects
Medicine ,Science - Abstract
Many Canadian-trained geriatricians from the subspecialty's first decade of existence continue to practice today. The objective of this study was to examine the experiences and perspectives of the earliest cohort of geriatricians in Canada. Using qualitative description method, we conducted semi-structured interviews to explore participants' experiences in training and practice. We included geriatricians who trained in Canada between 1980-1989 and were in active clinical practice as of October 2021. Each transcript was coded independently by two investigators. Thematic analysis was used to develop key themes. Fourteen participants (43% female, mean years in practice 35.9) described their choice to enter geriatric medicine, their training process, the roles of a geriatrician, challenges facing the profession and advice for trainees. Two themes were developed from the data: (i) advocacy for the older adult and (ii) geriatrics as "the road less taken". Advocacy was described as the "core mission" of a geriatrician. Participants discussed the importance of advocacy in clinical practice, education, research and disseminating geriatric principles in the health system and society. "The road less taken" reflected the challenges participants faced during training, which led to relatively few geriatricians for the growing number of older adults in Canada. Despite these challenges, participants described rewarding careers and encouraged trainees to consider the profession.
- Published
- 2023
- Full Text
- View/download PDF
196. Identifying the phonological backbone in the mental lexicon.
- Author
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Michael S Vitevitch and Mary Sale
- Subjects
Medicine ,Science - Abstract
Previous studies used techniques from network science to identify individual nodes and a set of nodes that were "important" in a network of phonological word-forms from English. In the present study we used a network simplification process-known as the backbone-that removed redundant edges to extract a subnetwork of "important" words from the network of phonological word-forms. The backbone procedure removed 68.5% of the edges in the original network to extract a backbone with a giant component containing 6,211 words. We compared psycholinguistic and network measures of the words in the backbone to the words that did not survive the backbone extraction procedure. Words in the backbone occurred more frequently in the language, were shorter in length, were similar to more phonological neighbors, and were closer to other words than words that did not survive the backbone extraction procedure. Words in the backbone of the phonological network might form a "kernel lexicon"-a small but essential set of words that allows one to communicate in a wide-range of situations-and may provide guidance to clinicians and researchers on which words to focus on to facilitate typical development, or to accelerate rehabilitation efforts. The backbone extraction method may also prove useful in other applications of network science to the speech, language, hearing and cognitive sciences.
- Published
- 2023
- Full Text
- View/download PDF
197. Minimum acceptable diet and its associated factors among children aged 6–23 months in Lalibela, northeast Ethiopia: a community-based cross-sectional study
- Author
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Yaregal Dejene, Getachew Sale Mezgebu, and Sisay Eshete Tadesse
- Subjects
Associated factor ,Complementary feeding ,Lalibela ,Minimum acceptable diet ,Minimum dietary diversity ,Nutrition. Foods and food supply ,TX341-641 ,Medicine - Abstract
The first 2 years of life are a critical window of opportunity for ensuring optimal child growth and development. In Ethiopia, the magnitude of the minimum acceptable diet ranges from 7 to 74⋅6 %. The evidence revealed the variation and unrelated data on the prevalence of minimum acceptable diet. Therefore, the present study aimed to assess the minimum acceptable diet and its associated factors among children aged 6–23 months in Lalibela town administration, northeast Ethiopia. A community-based cross-sectional study was conducted in Lalibela town administration, northeast Ethiopia among 387 mothers/caregivers with children aged 6–23 months from May 1 to 30, 2022. The data were entered by Epidata version 3.1 and analysed by SPSS version 25.0. A multivariable binary logistic regression model was fitted to identify factors associated with minimum acceptable diet. The degrees of association were assessed using an adjusted odds ratio with a 95 % confidence interval and P-value of 0⋅05. The magnitude of minimum acceptable diet in the study area was 16⋅7 % (95 % confidence interval: 12⋅8–20⋅6 %). Sex of child, getting infant and young child feeding counselling at antenatal care, infant feeding practice-related knowledge and childhood illness are the variables that were found to be an independent predictor of minimum acceptable diet. Health facilities should strengthen infant feeding counselling starting from antenatal care visits during pregnancy for the recommended minimum acceptable diet is crucial.
- Published
- 2023
- Full Text
- View/download PDF
198. Prospects for utilizing microbial consortia for lignin conversion
- Author
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Alberto Rodriguez, Matthew P. Hirakawa, Gina M. Geiselman, Mary B. Tran-Gyamfi, Yooli K. Light, Anthe George, and Kenneth L. Sale
- Subjects
lignin ,microbial communities ,synthetic consortia ,biomass valorization ,white-rot fungi ,Technology ,Chemical technology ,TP1-1185 - Abstract
Naturally occurring microbial communities are able to decompose lignocellulosic biomass through the concerted production of a myriad of enzymes that degrade its polymeric components and assimilate the resulting breakdown compounds by members of the community. This process includes the conversion of lignin, the most recalcitrant component of lignocellulosic biomass and historically the most difficult to valorize in the context of a biorefinery. Although several fundamental questions on microbial conversion of lignin remain unanswered, it is known that some fungi and bacteria produce enzymes to break, internalize, and assimilate lignin-derived molecules. The interest in developing efficient biological lignin conversion approaches has led to a better understanding of the types of enzymes and organisms that can act on different types of lignin structures, the depolymerized compounds that can be released, and the products that can be generated through microbial biosynthetic pathways. It has become clear that the discovery and implementation of native or engineered microbial consortia could be a powerful tool to facilitate conversion and valorization of this underutilized polymer. Here we review recent approaches that employ isolated or synthetic microbial communities for lignin conversion to bioproducts, including the development of methods for tracking and predicting the behavior of these consortia, the most significant challenges that have been identified, and the possibilities that remain to be explored in this field.
- Published
- 2023
- Full Text
- View/download PDF
199. Bone mineral density in high-level endurance runners: part A—site-specific characteristics
- Author
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Herbert, A. J., Williams, A. G., Lockey, S. J., Erskine, R. M., Sale, C., Hennis, P. J., Day, S. H., and Stebbings, G. K.
- Published
- 2021
- Full Text
- View/download PDF
200. Engineering glycoside hydrolase stability by the introduction of zinc binding
- Author
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Ellinghaus, Thomas L, Pereira, Jose H, McAndrew, Ryan P, Welner, Ditte H, DeGiovanni, Andy M, Guenther, Joel M, Tran, Huu M, Feldman, Taya, Simmons, Blake A, Sale, Kenneth L, and Adams, Paul D
- Subjects
Biological Sciences ,Industrial Biotechnology ,Biocatalysis ,Crystallography ,X-Ray ,Enzyme Stability ,Glycoside Hydrolases ,Mutant Proteins ,Protein Binding ,Protein Engineering ,Temperature ,Zinc ,glycoside hydrolases ,protein engineering ,thermal stability ,X-ray crystallography ,Physical Sciences ,Chemical Sciences ,Biophysics ,Biological sciences ,Chemical sciences ,Physical sciences - Abstract
The development of robust enzymes, in particular cellulases, is a key step in the success of biological routes to `second-generation' biofuels. The typical sources of the enzymes used to degrade biomass include mesophilic and thermophilic organisms. The endoglucanase J30 from glycoside hydrolase family 9 was originally identified through metagenomic analyses of compost-derived bacterial consortia. These studies, which were tailored to favor growth on targeted feedstocks, have already been shown to identify cellulases with considerable thermal tolerance. The amino-acid sequence of J30 shows comparably low identity to those of previously analyzed enzymes. As an enzyme that combines a well measurable activity with a relatively low optimal temperature (50°C) and a modest thermal tolerance, it offers the potential for structural optimization aimed at increased stability. Here, the crystal structure of wild-type J30 is presented along with that of a designed triple-mutant variant with improved characteristics for industrial applications. Through the introduction of a structural Zn2+ site, the thermal tolerance was increased by more than 10°C and was paralleled by an increase in the catalytic optimum temperature by more than 5°C.
- Published
- 2018
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