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Synchronization of an ensemble of oscillators is an emergent phenomenon present in several complex systems, ranging from social and physical to biological and technological systems. The most successful approach to describe how coherent behavior emerges in these complex systems is given by the paradigmatic Kuramoto model. This model has been traditionally studied in complete graphs. However, besides being intrinsically dynamical, complex systems present very heterogeneous structure, which can be represented as complex networks. This report is dedicated to review main contributions in the field of synchronization in networks of Kuramoto oscillators. In particular, we provide an overview of the impact of network patterns on the local and global dynamics of coupled phase oscillators. We cover many relevant topics, which encompass a description of the most used analytical approaches and the analysis of several numerical results. Furthermore, we discuss recent developments on variations of the Kuramoto model in networks, including the presence of noise and inertia. The rich potential for applications is discussed for special fields in engineering, neuroscience, physics and Earth science. Finally, we conclude by discussing problems that remain open after the last decade of intensive research on the Kuramoto model and point out some promising directions for future research., Comment: 181 pages, 48 figures. In Press, Accepted Manuscript, Physics Reports 2015

In this paper, we present a method for characterizing the evolution of time-varying complex networks by adopting a thermodynamic representation of network structure computed from a polynomial (or algebraic) characterization of graph structure. Commencing from a representation of graph structure based on a characteristic polynomial computed from the normalized Laplacian matrix, we show how the polynomial is linked to the Boltzmann partition function of a network. This allows us to compute a number of thermodynamic quantities for the network, including the average energy and entropy. Assuming that the system does not change volume, we can also compute the temperature, defined as the rate of change of entropy with energy. All three thermodynamic variables can be approximated using low-order Taylor series that can be computed using the traces of powers of the Laplacian matrix, avoiding explicit computation of the normalized Laplacian spectrum. These polynomial approximations allow a smoothed representation of the evolution of networks to be constructed in the thermodynamic space spanned by entropy, energy, and temperature. We show how these thermodynamic variables can be computed in terms of simple network characteristics, e.g., the total number of nodes and node degree statistics for nodes connected by edges. We apply the resulting thermodynamic characterization to real-world time-varying networks representing complex systems in the financial and biological domains. The study demonstrates that the method provides an efficient tool for detecting abrupt changes and characterizing different stages in network evolution., Comment: 16 pages, 12 figures. Published 25 September 2015

The idea of a collective intelligence behind the complex natural structures built by organisms suggests that the organization of social networks is selected so as to optimize problem-solving competence at the group-level. Here we study the influence of the social network topology on the performance of a group of agents whose task is to locate the global maxima of NK fitness landscapes. Agents cooperate by broadcasting messages informing on their fitness and use this information to imitate the fittest agent in their influence networks. In the case those messages convey accurate information on the proximity of the solution (i.e., for smooth fitness landscapes) we find that high connectivity as well as centralization boost the group performance. For rugged landscapes, however, these characteristics are beneficial for small groups only. For large groups, it is advantageous to slow down the information transmission through the network to avoid local maximum traps. Long-range links and modularity have marginal effects on the performance of the group, except for a very narrow region of the model parameters.

We present a continuous formulation of epidemic spreading on multilayer networks using a tensorial representation, extending the models of monoplex networks to this context. We derive analytical expressions for the epidemic threshold of the SIS and SIR dynamics, as well as upper and lower bounds for the disease prevalence in the steady state for the SIS scenario. Using the quasi-stationary state method we numerically show the existence of disease localization and the emergence of two or more susceptibility peaks, which are characterized analytically and numerically through the inverse participation ratio. Furthermore, when mapping the critical dynamics to an eigenvalue problem, we observe a characteristic transition in the eigenvalue spectra of the supra-contact tensor as a function of the ratio of two spreading rates: if the rate at which the disease spreads within a layer is comparable to the spreading rate across layers, the individual spectra of each layer merge with the coupling between layers. Finally, we verified the barrier effect, i.e., for three-layer configuration, when the layer with the largest eigenvalue is located at the center of the line, it can effectively act as a barrier to the disease. The formalism introduced here provides a unifying mathematical approach to disease contagion in multiplex systems opening new possibilities for the study of spreading processes., Comment: Revised version. 25 pages and 18 figures

We propose a generalization of the concept of assortativity based on the tensorial representation of multilayer networks, covering the definitions given in terms of Pearson and Spearman coefficients. Our approach can also be applied to weighted networks and provides information about correlations considering pairs of layers. By analyzing the multilayer representation of the airport transportation network, we show that contrasting results are obtained when the layers are analyzed independently or as an interconnected system. Finally, we study the impact of the level of assortativity and heterogeneity between layers on the spreading of diseases. Our results highlight the need of studying degree-degree correlations on multilayer systems, instead of on aggregated networks., Comment: 8 pages, 3 figures

Multilayer networks represent systems in which there are several topological levels each one representing one kind of interaction or interdependency between the systems' elements. These networks have attracted a lot of attention recently because their study allows considering different dynamical modes concurrently. Here, we revise the main concepts and tools developed up to date. Specifically, we focus on several metrics for multilayer network characterization as well as on the spectral properties of the system, which ultimately enable for the dynamical characterization of several critical phenomena. The theoretical framework is also applied for description of real-world multilayer systems., Comment: Chapter contribution to the book "Interconnected networks", edited by F. Schweitzer and A. Garas

In this paper we analyze the second-order Kuramoto model presenting a positive correlation between the heterogeneity of the connections and the natural frequencies in scale-free networks. We numerically show that discontinuous transitions emerge not just in disassortative but also in assortative networks, in contrast with the first-order model. We also find that the effect of assortativity on network synchronization can be compensated by adjusting the phase damping. Our results show that it is possible to control collective behavior of damped Kuramoto oscillators by tuning the network structure or by adjusting the dissipation related to the phases movement., Comment: 7 pages, 6 figures. In press in Physical Review E

We study two intertwined globally coupled networks of noisy Kuramoto phase oscillators that have the same natural frequency, but differ in their perception of the mean field and their contribution to it. Such a give-and-take mechanism is given by asymmetric in- and out-coupling strengths which can be both positive and negative. We uncover in this minimal network of networks intriguing patterns of discordance, where the ensemble splits into two clusters separated by a constant phase lag. If it differs from $\pi$, then traveling wave solutions emerge. We observe a second route to traveling waves via traditional one-cluster states. Bistability is found between the various collective states. Analytical results and bifurcation diagrams are derived with a reduced system., Comment: 8 pages, 5 figures, published in Phys. Rev. E

By the use of extensive numerical simulations we show that the nearest-neighbor energy level spacing distribution $P(s)$ and the entropic eigenfunction localization length of the adjacency matrices of Erd\H{o}s-R\'enyi (ER) {\it fully} random networks are universal for fixed average degree $\xi\equiv \alpha N$ ($\alpha$ and $N$ being the average network connectivity and the network size, respectively). We also demonstrate that Brody distribution characterizes well $P(s)$ in the transition from $\alpha=0$, when the vertices in the network are isolated, to $\alpha=1$, when the network is fully connected. Moreover, we explore the validity of our findings when relaxing the randomness of our network model and show that, in contrast to standard ER networks, ER networks with {\it diagonal disorder} also show universality. Finally, we also discuss the spectral and eigenfunction properties of small-world networks., Comment: 11 pages, 9 figures

The financial market is a complex dynamical system composed of a large variety of intricate relationships between several entities, such as banks, corporations and institutions. At the heart of the system lies the stock exchange mechanism, which establishes a time-evolving network of trades among companies and individuals. Such network can be inferred through correlations between time series of companies stock prices, allowing the overall system to be characterized by techniques borrowed from network science. Here we study the presence of communities in the inferred stock market network, and show that the knowledge about the communities alone can provide a nearly complete representation of the system topology. This is done by defining a simple null model, a randomized version of the studied network sharing only the sizes and interconnectivity between communities observed. We show that many topological characteristics of the inferred networks are carried over the networks generated by the null model. In particular, we find that in periods of instability, such as during a financial crisis, the network strays away from a state of well-defined community structure to a much more uniform topological organization. We show that the framework presented here provides a good null model representation of topological variations taking place in the market during crises. Also, the general approach used in this work can be extended to other systems., Comment: 13 pages, 11 figures