485 results on '"R Oakley"'
Search Results
152. Re: An evidence-based review of the assessment and management of penetrating neck injuries
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R, Harris and R, Oakley
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Diagnostic Imaging ,Neck Injuries ,Disease Management ,Humans ,Wounds, Penetrating - Published
- 2012
153. γ-Tubulin plays a key role in inactivating APC/C(Cdh1) at the G(1)-S boundary
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Heather Edgerton-Morgan and Berl R. Oakley
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Cyclin B ,Cell Cycle Proteins ,Spindle Apparatus ,medicine.disease_cause ,Spindle pole body ,Anaphase-Promoting Complex-Cyclosome ,Aspergillus nidulans ,APC/C activator protein CDH1 ,S Phase ,03 medical and health sciences ,0302 clinical medicine ,Tubulin ,Report ,medicine ,Research Articles ,030304 developmental biology ,Cell Nucleus ,0303 health sciences ,Mutation ,biology ,G1 Phase ,Ubiquitin-Protein Ligase Complexes ,Cell Biology ,Cell cycle ,biology.organism_classification ,Molecular biology ,3. Good health ,Spindle apparatus ,Cell biology ,biology.protein ,030217 neurology & neurosurgery - Abstract
Failure to inactivate APC/CCdhA at the G1–S boundary of the cell cycle as a result of a γ-tubulin mutation that disrupts the APC/CCdhA localization prevents cell cycle progression., A γ-tubulin mutation in Aspergillus nidulans, mipA-D159, causes failure of inactivation of the anaphase-promoting complex/cyclosome (APC/C) in interphase, resulting in failure of cyclin B (CB) accumulation and removal of nuclei from the cell cycle. We have investigated the role of CdhA, the A. nidulans homologue of the APC/C activator protein Cdh1, in γ-tubulin–dependent inactivation of the APC/C. CdhA was not essential, but it targeted CB for destruction in G1, and APC/CCdhA had to be inactivated for the G1–S transition. mipA-D159 altered the localization pattern of CdhA, and deletion of the gene encoding CdhA allowed CB to accumulate in all nuclei in strains carrying mipA-D159. These data indicate that mipA-D159 causes a failure of inactivation of APC/CCdhA at G1–S, perhaps by altering its localization to the spindle pole body, and, thus, that γ-tubulin plays an important role in inactivating APC/CCdhA at this point in the cell cycle.
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- 2012
154. Overexpression of the Aspergillus nidulans histone 4 acetyltransferase EsaA increases activation of secondary metabolite production
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Alexandra A, Soukup, Yi-Ming, Chiang, Jin Woo, Bok, Yazmid, Reyes-Dominguez, Berl R, Oakley, Clay C C, Wang, Joseph, Strauss, and Nancy P, Keller
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Fungal Proteins ,Histones ,Gene Expression Regulation, Fungal ,Amino Acid Motifs ,Gene Expression ,Acetylation ,Aspergillus nidulans ,Article ,Histone Acetyltransferases - Abstract
Regulation of secondary metabolite (SM) gene clusters in Aspergillus nidulans has been shown to occur through cluster specific transcription factors or through global regulators of chromatin structure such as histone methyltransferases, histone deacetylases, or the putative methyltransferase LaeA. A multi-copy suppressor screen for genes capable of returning SM production to the SM deficient ΔlaeA mutant resulted in identification of the essential histone acetyltransferase EsaA, able to complement an esa1 deletion in Saccharomyces cereviseae. Here we report that EsaA plays a novel role in SM cluster activation through histone 4 lysine 12 (H4K12) acetylation in four examined SM gene clusters (sterigmatocystin, penicillin, terrequinone, and orsellinic acid), in contrast to no increase in H4K12 acetylation of the housekeeping tubA promoter. This augmented SM cluster acetylation requires LaeA for full effect and correlates with both increased transcript levels and metabolite production relative to wild type. H4K12 levels may thus represent a unique indicator of relative production potential, notably of SMs.
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- 2012
155. Oculo-vestibular recoupling using galvanic vestibular stimulation to mitigate simulator sickness
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Michael J. Cevette, Benn E. Smith, Kenneth H. Brookler, Linsey S. Wagner, David A. Zapala, Daniela Cocco, Jan Stepanek, Sarah R. Oakley, Anna M. Galea, and Gaurav N. Pradhan
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Vestibular system ,Adult ,Male ,medicine.medical_specialty ,Computer science ,Motion Sickness ,Public Health, Environmental and Occupational Health ,Sensory system ,Electric Stimulation Therapy ,Reflex, Vestibulo-Ocular ,Audiology ,medicine.disease ,Flight simulator ,Visual field ,User-Computer Interface ,Motion sickness ,Orientation ,Simulator sickness ,Electrode array ,medicine ,Aerospace Medicine ,Humans ,Female ,Vestibule, Labyrinth ,Galvanic vestibular stimulation - Abstract
Introduction Despite improvement in the computational capabilities of visual displays in flight simulators, intersensory visual-vestibular conflict remains the leading cause of simulator sickness (SS). By using galvanic vestibular stimulation (GVS), the vestibular system can be synchronized with a moving visual field in order to lessen the mismatch of sensory inputs thought to result in SS. Methods A multisite electrode array was used to deliver combinations of GVS in 21 normal subjects. Optimal electrode combinations were identified and used to establish GVS dose-response predictions for the perception of roll, pitch, and yaw. Based on these data, an algorithm was then implemented in flight simulator hardware in order to synchronize visual and GVS-induced vestibular sensations (oculo-vestibular-recoupled or OVR simulation). Subjects were then randomly exposed to flight simulation either with or without OVR simulation. A self-report SS checklist was administered to all subjects after each session. An overall SS score was calculated for each category of symptoms for both groups. Results The analysis of GVS stimulation data yielded six unique combinations of electrode positions inducing motion perceptions in the three rotational axes. This provided the algorithm used for OVR simulation. The overall SS scores for gastrointestinal, central, and peripheral categories were 17%, 22.4%, and 20% for the Control group and 6.3%, 20%, and 8% for the OVR group, respectively. Conclusions When virtual head signals produced by GVS are synchronized to the speed and direction of a moving visual field, manifestations of induced SS in a cockpit flight simulator are significantly reduced.
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- 2012
156. The effect of galvanic vestibular stimulation on distortion product otoacoustic emissions
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Benn E. Smith, Sarah R. Oakley, Kenneth H. Brookler, Daniela Cocco, Anna M. Galea, Linsey S. Wagner, Michael J. Cevette, Gaurav N. Pradhan, David A. Zapala, and Jan Stepanek
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Adult ,Male ,medicine.medical_specialty ,Distortion product ,Otoacoustic Emissions, Spontaneous ,Stimulation ,Audiology ,Young Adult ,Subject variability ,otorhinolaryngologic diseases ,medicine ,Humans ,Statistical analysis ,Galvanic vestibular stimulation ,Cochlea ,Vestibular system ,Chemistry ,General Neuroscience ,Galvanic Skin Response ,Vestibular nerve ,Sensory Systems ,Biomechanical Phenomena ,Electrophysiological Phenomena ,Otorhinolaryngology ,Acoustic Stimulation ,Multivariate Analysis ,Female ,sense organs ,Neurology (clinical) ,Vestibule, Labyrinth - Abstract
Galvanic stimulation has long been used as a nonmechanical means of activating the vestibular apparatus through direct action on the vestibular nerve endings. This stimulation has been reported to be safe, but no studies have examined the potential changes in the corresponding cochlear receptors. The aim of the present study was to evaluate the effect of galvanic vestibular stimulation (GVS) on distortion product otoacoustic emissions (DPOAEs). Fourteen subjects underwent DPOAEs during several conditions of GVS. The DPOAEs ranged from ∼ 1 kHz to ∼ 8 kHz at 65/55 dB for f1/f2 and with an f2/f1 ratio of 1.2. The subjects were evaluated at 10 stimulation conditions that ranged from −2.0 mA to +2.0 mA for each frequency. Statistical analysis showed no significant differences in DPOAE amplitudes for all conditions with and without GVS. Results also showed no significant differences between DPOAE amplitudes before and after GVS. Multivariate analysis found subject variability in DPOAE amplitude, which was not thought to be GVS related. Results indicated that GVS produced neither temporary nor permanent changes in DPOAEs.
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- 2012
157. Molecular genetic analysis reveals that a nonribosomal peptide synthetase-like (NRPS-like) gene in Aspergillus nidulans is responsible for microperfuranone biosynthesis
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Yi-Ming Chiang, Kenneth S. Bruno, Hsu Hua Yeh, Kuan Han Lee, Tung-Kung Wu, Ruth Entwistle, Berl R. Oakley, Manmeet Ahuja, and Clay C. C. Wang
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Secondary metabolite ,Applied Microbiology and Biotechnology ,Genome ,Aspergillus nidulans ,Article ,Nonribosomal peptide ,Polyketide synthase ,Gene Expression Regulation, Fungal ,medicine ,Peptide Synthases ,Promoter Regions, Genetic ,Gene ,Genetics ,Regulation of gene expression ,chemistry.chemical_classification ,biology ,Alcohol Dehydrogenase ,General Medicine ,biology.organism_classification ,Biochemistry ,chemistry ,Metabolic Engineering ,Polyketides ,biology.protein ,Heterologous expression ,Biotechnology ,medicine.drug - Abstract
Genome sequencing of Aspergillus species including A. nidulans has revealed that there are far more secondary metabolite biosynthetic gene clusters than secondary metabolites isolated from these organisms. This implies that these organisms can produce additional secondary metabolites have not yet been elucidated. The A. nidulans genome contains twelve nonribosomal peptide synthetase (NRPS), one hybrid polyketide synthase/nonribosomal peptide synthetase (PKS/NRPS), and fourteen NRPS-like genes. The only NRPS-like gene in A. nidulans with a known product is tdiA which is involved in terrequinone A biosynthesis. To attempt to identify the products of these NRPS-like genes, we replaced the native promoters of the NRPS-like genes with the inducible alcohol dehydrogenase (alcA) promoter. Our results demonstrated that induction of the single NRPS-like gene AN3396.4 led to the enhanced production of microperfuranone. Furthermore, heterologous expression of AN3396.4 in A. niger confirmed that only one NRPS-like gene, AN3396.4, is necessary for the production of microperfuranone.
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- 2012
158. Two separate gene clusters encode the biosynthetic pathway for the meroterpenoids austinol and dehydroaustinol in Aspergillus nidulans
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Chun-Jun Guo, Jui-Hsiang Hung, Berl R. Oakley, Hsien-Chun Lo, Edyta Szewczyk, Clay C. C. Wang, Yi-Ming Chiang, Manmeet Ahuja, and Ruth Entwistle
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Mutant ,Prenyltransferase ,Genes, Fungal ,Biochemistry ,Catalysis ,Aspergillus nidulans ,Article ,chemistry.chemical_compound ,Polyketide ,Open Reading Frames ,Colloid and Surface Chemistry ,Biosynthesis ,Polyketide synthase ,Gene ,Chromatography, High Pressure Liquid ,biology ,Terpenes ,General Chemistry ,biology.organism_classification ,Dimethylallyltranstransferase ,Open reading frame ,chemistry ,Multigene Family ,Mutation ,biology.protein ,Biocatalysis ,Gene Deletion - Abstract
Meroterpenoids are a class of fungal natural products that are produced from polyketide and terpenoid precursors. An understanding of meroterpenoid biosynthesis at the genetic level should facilitate engineering of second-generation molecules and increasing production of first-generation compounds. The filamentous fungus Aspergillus nidulans has previously been found to produce two meroterpenoids, austinol and dehydroaustinol. Using targeted deletions that we created, we have determined that, surprisingly, two separate gene clusters are required for meroterpenoid biosynthesis. One is a cluster of four genes including a polyketide synthase gene, ausA. The second is a cluster of ten additional genes including a prenyltransferase gene, ausN, located on a separate chromosome. Chemical analysis of mutant extracts enabled us to isolate 3,5-dimethylorsellinic acid and ten additional meroterpenoids that are either intermediates or shunt products from the biosynthetic pathway. Six of them were identified as novel meroterpenoids in this study. Our data, in aggregate, allow us to propose a complete biosynthetic pathway for the A. nidulans meroterpenoids.
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- 2012
159. Compatibility of Foliar Insecticides and Soybean Cyst Nematode Bioassays
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Timothy C. Todd, Thomas R. Oakley, Harold N. Trick, Chad R. Brady, and Jiarui Li
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Horticulture ,biology ,medicine ,Soybean cyst nematode ,food and beverages ,Bioassay ,Cyst ,Plant Science ,medicine.disease ,biology.organism_classification - Abstract
The objective of this study was to investigate the effect of foliar-applied insecticides on soybean cyst nematode reproduction in greenhouse bioassays. In two independent trials, a total of eight different insecticides were evaluated for their non-target effects on soybean cyst nematodes. Accepted for publication 20 January 2012. Published 9 April 2012.
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- 2012
- Full Text
- View/download PDF
160. Tools for Manipulation of Secondary Metabolism Pathways: Rapid Promoter Replacements and Gene Deletions in Aspergillus nidulans
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C. Elizabeth Oakley, Heather Edgerton-Morgan, and Berl R. Oakley
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Genetics ,biology ,Promoter ,biology.organism_classification ,Genome ,chemistry.chemical_compound ,Transformation (genetics) ,chemistry ,Aspergillus nidulans ,Polyketide synthase ,biology.protein ,Secondary metabolism ,Gene ,DNA - Abstract
Targeted gene deletions and promoter replacements are proving to be a valuable tool for awakening and analyzing silent secondary metabolism gene clusters in Aspergillus nidulans and, as molecular genetic methods for manipulating the genomes of other fungi are developed, they will likely be as valuable in those organisms. Here we describe procedures for constructing DNA fragments by PCR that can be used to replace genes or promoters quickly and on a large scale. We also describe transformation procedures for A. nidulans that allow these fragments to be introduced into target strains efficiently such that many genes or promoters can be replaced in a single experiment.
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- 2012
- Full Text
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161. The functions of myosin II and myosin V homologs in tip growth and septation in Aspergillus nidulans
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Berl R. Oakley, Naimeh Taheri-Talesh, and Yi Xiong
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Hyphal growth ,Myosin Type V ,lcsh:Medicine ,Yeast and Fungal Models ,Mycology ,Plant Science ,Biology ,Microfilament ,Time-Lapse Imaging ,Biochemistry ,Microbiology ,Aspergillus nidulans ,Fungal Proteins ,Model Organisms ,Molecular Cell Biology ,Myosin ,Tip growth ,Cytoskeleton ,lcsh:Science ,Actin ,Myosin Type II ,Fungal protein ,Multidisciplinary ,Spitzenkörper ,lcsh:R ,Botany ,Proteins ,Cellular Structures ,Cell biology ,lcsh:Q ,Genome, Fungal ,Research Article - Abstract
Because of the industrial and medical importance of members of the fungal genus Aspergillus, there is considerable interest in the functions of cytoskeletal components in growth and secretion in these organisms. We have analyzed the genome of Aspergillus nidulans and found that there are two previously unstudied myosin genes, a myosin II homolog, myoB (product = MyoB) and a myosin V homolog, myoE (product = MyoE). Deletions of either cause significant growth defects. MyoB localizes in strings that coalesce into contractile rings at forming septa. It is critical for septation and normal deposition of chitin but not for hyphal extension. MyoE localizes to the Spitzenkörper and to moving puncta in the cytoplasm. Time-lapse imaging of SynA, a v-SNARE, reveals that in myoE deletion strains vesicles no longer localize to the Spitzenkörper. Tip morphology is slightly abnormal and branching occurs more frequently than in controls. Tip extension is slower than in controls, but because hyphal diameter is greater, growth (increase in volume/time) is only slightly reduced. Concentration of vesicles into the Spitzenkörper before incorporation into the plasma membrane is, thus, not required for hyphal growth but facilitates faster tip extension and a more normal hyphal shape.
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- 2012
162. READERS REPORT.
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ADAMS, C. M., TURNBULL, J. M., DOSKERE, N. H., DE PACQUAL, A., BECKER, B. D., SCHWEMMER, KARL, HAUGE, GABRIEL, KENNEDY, R. OAKLEY, ELLINGER, M. E., COPE, EDDIE, BANIS, V. N., WILKINSON, JOHN F., CROIX, FREDERIC W. LA, CROWDER, HARRy S., CUNHA, T. J., MECREA, WHITNEY B., WILCOXON, ROBERT R., VARIAN, SIGURD F., GOOLD, WILLIAM O., and PITT, PAUL A.
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LETTERS to the editor ,LAYOUT (Printing) ,AGRICULTURE ,CHRISTIANITY - Abstract
Several letters to the editor are presented in response to articles in previous issues including "Why Cal Poly Men Are Wanted" in the February 18, 1956 issue, one on the layout improvements made by "Business Week" magazine, and one on the audit of the Catholic Church in the March 3, 1956 issue.
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- 1956
163. READERS REPORT.
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Goethel, John D., Weinwuem, Ernest H., Kee, W. B., Patrick, Talbot, Denny, Nicholas G., Phillips, Lea, Kennedy, R. Oakley, and Purcell, Harry B.
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LETTERS to the editor ,WRITE-offs ,TARIFF ,POWER plants - Abstract
Several letters to the editor are presented in response to articles in the previous issues, including "Write-Off Boost for Business" in the August 7, 1954 issue, "A Dubious Choice" in the August 7, 1954 issue, and "Reasons for Moving" in the July 24, 1954 issue.
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- 1954
164. Human gamma-tubulin functions in fission yeast
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Tetsuya Horio and Berl R. Oakley
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Spindle Apparatus ,macromolecular substances ,Microtubules ,Spindle pole body ,chemistry.chemical_compound ,Species Specificity ,Tubulin ,Microtubule ,Schizosaccharomyces ,Humans ,Mitosis ,Organelles ,biology ,Drug Resistance, Microbial ,Articles ,Cell Biology ,biology.organism_classification ,Recombinant Proteins ,Yeast ,Cell biology ,Nocodazole ,chemistry ,Schizosaccharomyces pombe ,biology.protein - Abstract
gamma-Tubulin is a phylogenetically conserved component of microtubule-organizing centers that is essential for viability and microtubule function. To examine the functional conservation of gamma-tubulin, we have tested the ability of human gamma-tubulin to function in the fission yeast Schizosaccharomyces pombe. We have found that expression of a human gamma-tubulin cDNA restores viability and a near-normal growth rate to cells of S. pombe lacking endogenous gamma-tubulin. Immunofluorescence microscopy showed that these cells contained normal mitotic spindles and interphase microtubule arrays, and that human gamma-tubulin, like S. pombe gamma-tubulin, localized to spindle pole bodies, the fungal microtubule-organizing centers. These results demonstrate that human gamma-tubulin functions in fission yeast, and they suggest that in spite of the great morphological differences between the microtubule-organizing centers of humans and fission yeasts, gamma-tubulin is likely to perform the same tasks in both. They suggest, moreover, that the proteins that interact with gamma-tubulin, including, most obviously, microtubule-organizing center proteins, must also be conserved. We have also found that a fivefold overexpression of S. pombe gamma-tubulin causes no reduction in growth rates or alteration of microtubule organization. We hypothesize that the excess gamma-tubulin is maintained in the cytoplasm in a form incapable of nucleating microtubule assembly. Finally, we have found that expression of human gamma-tubulin or overexpression of S. pombe gamma-tubulin causes no significant alteration of resistance to the antimicrotubule agents benomyl, thiabendazole and nocodazole.
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- 1994
- Full Text
- View/download PDF
165. 93rd annual convention podium and poster abstracts
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C. M. Davis, S. A. Strong, M. D. Hellinger, P. R. Williamson, S. W. Larach, A. Ferrara, T. B. Blake, D. S. Medich, Y. Ziv, J. R. Oakley, P. Reissman, M. Piccirillo, A. Ulrich, J. J. Nogueras, S. D. Wexner, M. S. Rubin, L. E. Bodenstein, K. C. Kent, M. E.R. Williamson, W. G. Lewis, P. M. Sagar, P. J. Holdsworth, D. Johnston, V. W. Fazio, J. R. Goldblum, M. T. Sirimarco, I. C. Lavery, R. E. Petras, W. R. Treem, J. Cohen, P. M. Davis, J. S. Hyams, K. W. Eu, D. C.C. Bartolo, J. D. Green, R. D. Riether, L. Rosen, J. J. Stasik, J. A. Sheets, J. Reed, I. T. Khubchandani, N. C. Armitage, M. Chapman, J. D. Hardcastle, M. Viamonte, G. Plasencia, O. Wiltz, M. Jacobs, P. J. Finan, M. Passaro, J. M. Church, E. McGannon, M. Wilson, S. Hull-Boiner, C. F. Kollmorgen, A. P. Meagher, B. G. Wolff, J. H. Pemberton, J. A. Martenson, D. M. Ilstrup, M. R. Moran, A. Ramos, D. A. Rothenberger, S. M. Goldberg, D. Johnson, R. D. Madoff, W. D. Wong, C. O. Finne, F. Konishi, K. Furuta, K. Kanazawa, D. Lockhart, S. Schmitt, P. P. Caushaj, J. Garcia-Aguilar, C. Belmonte, E. C. Schiesel, W. P. Mazier, A. J. Senagore, M. F. Piccirillo, T.-A. Teoh, K.-S. Yoon, R.A. Patino Paul, J. Lucas, R. Nelson, N. Norton, E. Cautley, W. R. Schouten, J. W. Briel, J. J.A. Auwerda, E. J.R. de Graaf, A. C. Lowry, S. M. Sentovich, G. J. Blatchford, L. J. Rivela, A. G. Thorson, M. A. Christensen, J. M.N. Jorge, Y. K. Yang, A. Shafik, J. D.F. Allendorf, M. L. Kayton, S. K. Libutti, M. J. Trokel, R. L. Whelan, M. R. Treat, R. Nowygrod, M. Bessler, R. E. Frank, T. J. Saclarides, S. Leurgans, N. J. Speziale, E. Drab, D. Rubin, T. L. Hull, T. K. Schroeder, J. H. Scholefield, O. A. Ogunbiyi, J. H.F. Smith, K. Rogers, F. Sharp, W. E. Longo, A. M. Vernava, T. P. Wade, M. A. Coplin, K. S. Virgo, F. E. Johnson, M. Brady, J. Kavolius, S. H.Q. Quan, E. T. Goldstein, S. Feldman, H. A. Shub, D. R. Bennett, R. Kumar, M. A. McMillen, S. Thornton, D. A. Khoury, F. G. Opelka, T-A. Teoh, S. M. Cohen, E. G. Weiss, H. Ortiz, M. De Miguel, P. Armendáriz, J. Rodriguez, C. Chocarro, R. Farouk, H. R. Dorrance, G. S. Duthie, J. B. Rainey, P. J. Morgado, M. L. Corman, Y. J. Kawamura, T. Sawada, T. Muto, H. Nagai, J. Hill, I. MacLennan, S. R. Binderow, N. Daniel, E. D. Ehrenpreis, J. E. Jensen, G. F. Bonner, W. B. Ruderman, J. W. Milsom, D. H. Gibbs, D. E. Beck, T. C. Hicks, A. E. Timmcke, J. B. Gathright, D. Cheong, F. V. Lucas, M. McGinity, B. A. Taylor, P. Godwin, P. Holdsworth, W. Lewis, P. Quirke, M. Williamson, J. Kokoszka, D. Pavel, H. Abcarian, B. M. Stephenson, A. R. Morgan, J. R. Salaman, M. H. Wheeler, T. C.K. Tran, W. Willemsen, H. C. Kuijpers, J. F. Lehman, J. S. Wiseman, J. MacFie, P. Sedman, J. May, B. Mancey-Jones, D. Johnstone, F. E. Nwariaku, R. B. Rochon, P. J. Huber, C. J. Carrico, A. Ortega, R. Beart, D. Winchester, G. Steele, R. Green, P. F. Caushaj, D. Devereaux, S. Griffey, D. Reiver, W. A. Kmiot, R. Baker, M. A. Luchtefeld, G. Anthone, R. Schlinkert, J. V. Roig, C. Villoslada, A. Solana, R. Alos, J. Hinojosa, S. Lledo, D. R.E. Johnson, W. D. Buie, L. L. Jensen, J. Heine, B. Hoffmann, A. Timmcke, T. Hicks, F. Opelka, D. Beck, A. Sousa, S. A. Araùjo, F. M. Damico, A. C. Cordeiro, H. W. Pinotti, A. H. Gama, S. Fengler, R. Pearl, C. Orsay, F. Seow-Choen, J. M.S. Ho, O. H. Wiltz, M. Torregrosa, R. C. Brasch, A. J. Bufo, P. Krienberg, G. P. Johnson, G. F. Gowen, P. D. Mullen, D. Behrens, T. G. Hughes, M. Wynn, J. S. Pollack, A. S. Rajagopal, T. Huynh, C. Schanbacher, W. G.E. Hickson, Y.-K. Yang, S. Heymen, S.-K. Choi, C. A. Vaccaro, T. A. Teoh, S. K. Choi, D. M.O. Cheong, V. D. Salanga, A. MacDonald, J. N. Baxter, I. G. Finlay, A. Mellgren, S. Bremmer, A. Dolk, P. Gillgren, C. Johansson, S. O. Ahlbäck, R. Udén, B. Holmström, S. O'Donovan, J.A. Reis Neto, S. Ciquini, F. A. Quilici, J. A. Reis, L. Torrabadella, G. Salgado, K. D. Horvath, R. Golub, H. Ahsan, W. Cirocco, L. C. Lavery, R. Alós, E. García-Granero, N. Uribe, C. Sala, G. Ozuner, G. Daniels, R. C. Lieberman, G. Polites, Y. Deshpande, M. Niehoff, B. Chandel, D. D. Berglund, B. T. Gemlo, M. P. Spencer, P. W. Marcello, P. L. Roberts, D. J. Schoetz, J. J. Murray, J. A. Coller, M. C. Veidenheimer, W. A. Koltun, M. M. Bloomer, P. Colony, F. Ruggeiro, P. R. Fleshner, F. Michelassi, P. Finan, D. Ash, D. R. Antonenko, K. S. Khanduja, S. D. Fitzgerald, P. Moniz-Pereira, E. K. Outwater, G. J. Marks, M. Mohiuddin, M. N. Hartley, R. F. Holbrook, M. A. Rodriguez-Bigas, K. Ramakrishnan, M. L. Palmer, N. J. Petrelli, T. Takahashi, S. Nivatvongs, K. P. Batts, S. W. Lucas, S. N. Klein, R. D. Keidan, J. P. Bannon, J. Zhou, L. M. Hunt, M. H. Robinson, C. E. Hugkulstone, B. Clarke, S. A. Vernon, R. H. Gregson, M. Ryan, S. Dutta, A. Levine, J. M. Dominguez, P. Bolan, S. D. Bines, M. Adachi, T. Watanabe, K. Okinaga, K. Hase, C. Shatney, H. Mochizuki, T. Ure, K. Dehghan, C. A. Andrus, G. L. Daniel, J. C. D'Emilia, M. Rodriguez-Bigas, O. K. Suh, D. A. Brewer, C. Fung, P. Chapuis, E. L. Bokey, J. C. Garcia, S. Banerjee, F. H. Remzi, G. C. Ger, L. Gonzalez, A. S. Gee, A. M. Roe, P. Durdey, M. D. Kaye, S. Kyzer, P. H. Gordon, M. Hasegawa, Tae P. Bun, D. Ikeuchi, H. Onodera, M. Imamura, S. Maetani, T. Blake, M. Hellinger, H. Grewal, D. S. Klimstra, A. M. Cohen, J. G. Guillem, P. S. Rooney, K.-A. Gifford, P. A. Clarke, J. A. Kuhn, K. Bryce, N. Frank, R. D. Dignan, W. E. Lichliter, E. Franko, R. M. Jacobson, J. T. Preskitt, Z. Lieberman, P. Tulanon, H. Steinbach, T. McCarty, T. Simons, W. S. Chen, S. Y. Leu, H. Hsu, A. Halverson, S. Congilosi, R. Madoff, D. Rothenberger, R. Paterson, J. A. Cartmill, B. S. Gingold, M. Cooper, S. R. Gorfine, J. J. Bauer, I. M. Gelernt, I. Kreel, M. T. Harris, J. F. Vallejo, A. Kestenberg, N. Miyajima, N. Kano, Y. Ishikawa, S. Sakai, T. Yamakawa, D. P. Otchy, J. A. Van Heerden, A. L. Weaver, L. D. Winter, J. Mav, P. Y. Lee, J. T. Vetto, E. S. Sullivan, J. Rabkin, J. L. Mayoral, A. J. Matas, P. Bove, T. Visser, D. Barkel, M. Villalba, P. Bendick, J. Glover, R. W. Golub, W. C. Cirocco, W. Altringer, J. M. Domingues, L. T. Brubaker, C. S. Smith, S. Kumar, and P. Gilbert
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Convention ,medicine.medical_specialty ,Surgical oncology ,business.industry ,General surgery ,Gastroenterology ,medicine ,General Medicine ,business ,Colorectal surgery - Published
- 1994
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166. Colonoscopy training: The need for patience (patients)
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Scott A. Strong, Tracy L. Hull, John R. Oakley, Jeffrey W. Milsom, and James M. Church
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Learning experience ,medicine.medical_specialty ,medicine.diagnostic_test ,business.industry ,Learning curve ,General surgery ,Completion rate ,Medicine ,Colonoscopy ,Surgery ,General Medicine ,business - Abstract
Background: The insertion of a colonoscope to the caecum is a difficult technique to teach and to learn. The most commonly used criterion for proficiency is completion rate and early experience is often discouraging. In order to document the learning curve and better define normal progress for the early learning experience, the performance of trainees during their first 100–125 cases was recorded. Methods: The completion rate and time for office colonoscopy were recorded prospectively over a 5-year period for each of 18 trainees. Trainees’ experience was analysed in groups of 25 cases, numbered chronologically. Completion rate was defined as the number of examinations completed to the caecum by the trainee expressed as a percentage of the number completed by the staff. Results: The mean overall completion rate for trainees was 56.4% (range 27.8–83.9%). For the first five groups of 25 cases, the percentage completion rates (in order from first 25 cases to fifth 25 cases) were 43.1, 52.6, 49.3, 61.8 and 75.1%, respectively. There was a wide variation in completion rates between trainees, but no difference in time taken. (Time for trainees to complete the procedure, in order from the first 25 cases to fifth 25 cases: 18.7, 19.1, 19.4, 17.6 and 17.1 min, respectively.) Conclusions: Early experience in colonoscopy can be discouraging. At least 100 cases are needed to attain a level of proficiency that enables completion in two-thirds of cases, whereas 125 cases lead to an average completion rate of 75%.
- Published
- 2002
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167. An Avatar to Measure Vestibular Sensations of Movement
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Sarah R. Oakley, David Zapada, Anna M. Galea, Benn E. Smith, Jan Stepanek, Michael J. Cevette, and Linsey S. Wagner
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Vestibular system ,medicine.medical_specialty ,biology ,business.industry ,Movement (music) ,Audiology ,biology.organism_classification ,Otorhinolaryngology ,Joystick ,Vertigo ,Sensation ,otorhinolaryngologic diseases ,medicine ,Surgery ,In patient ,business ,Galvanic vestibular stimulation ,Avatar - Abstract
Objective: 1) Report a novel method for measuring vestibular sensations of movement induced by galvanic vestibular stimulation (GVS). 2) Introduce a new approach to quantify vestibular symptoms in patients with vertigo and related disorders.Method: We created a software program using a Logitech wireless joystick to measure and display in three dimensions the manner in which subjects felt movement in response to GVS. Each subject underwent thirty 20-second protocols utilizing ten different combinations of GVS scalp electrode pairs.Results: Three dimensional avatar displays of subject responses to GVS indicated the direction and magnitude of pitch, roll, and yaw as well as the angular velocity of motion. As evident on the avatar display in response to a 2.5 mA GVS pulse, the majority of subjects reported sensation of movement, 19 out of 21 (90%) reporting pitch, 17 out of 21 (81%) reporting yaw, and 17 out of 21 (81%) reporting roll sensations.Conclusion: 1) These data demonstrate a software-based 3 dimensi...
- Published
- 2011
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168. Negative effect of deep cochlear implant electrode insertion on speech perception
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Sarah A, Sydlowski, Sarah R, Oakley, Sarah A, Borton, David M, Barrs, and Michael J, Cevette
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Reoperation ,Preoperative Period ,Speech Perception ,Humans ,Female ,Postoperative Period ,Tomography, X-Ray Computed ,Cochlear Implantation ,Device Removal ,Aged ,Cochlea ,Electrodes, Implanted - Abstract
This case study details the evaluation, explantation, and subsequent reimplantation of a cochlear implant (CI) recipient with an unusually deep electrode array insertion. Although the positive value of sufficiently deep insertion and the effect of insertion variability have been researched, there are few data available that illustrate the detrimental effects on speech recognition when deep insertion corrupts optimal use of the CI. This unique case report challenges the assumption that deeper insertion will result in improved speech understanding and demonstrates the importance of fully evaluating recipients' complaints and recognizing the impact of frequency-to-place mismatch.
- Published
- 2011
169. Redox-active bridging ligands based on indigo diimine ('Nindigo') derivatives
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Robert McDonald, Robin G. Hicks, Simon R. Oakley, Kate M. Waldie, Brendan D. Peters, Derek Mandel, Brian O. Patrick, and Graeme Nawn
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Indole test ,Ligand ,Imine ,chemistry.chemical_element ,Photochemistry ,Indigo ,Inorganic Chemistry ,chemistry.chemical_compound ,Deprotonation ,chemistry ,Polymer chemistry ,Physical and Theoretical Chemistry ,Absorption (chemistry) ,Diimine ,Palladium - Abstract
Reactions of indigo with a variety of substituted anilines produce the corresponding indigo diimines ("Nindigos") in good yields. Nindigo coordination complexes are subsequently prepared by reactions of the Nindigo ligands with Pd(hfac)(2). In most cases, binuclear complexes are obtained in which the deprotonated Nindigo bridges two Pd(hfac) moieties in the expected bis-bidentate binding mode. When the Nindigo possesses bulky substituents on the imine (mesityl, 2,6-dimethylphenyl, 2,6-diisopropylphenyl, etc.), mononuclear Pf(hfac) complexes are obtained in which the Nindigo core has isomerized from a trans- to a cis-alkene; in these structures, the palladium is bound to the cis-Nindigo ligand at the two indole nitrogen atoms; the remaining proton is bound between the imine nitrogen atoms. The palladium complexes possess intense electronic absorption bands [near 920 nm for the binuclear complexes and 820 nm for the mononuclear cis-Nindigo complexes; extinction coefficients are (1.0-2.0) × 10(4) M(-1) cm(-1)] that are ligand-centered (π-π*) transitions. Cyclic voltammetry investigations reveal multiple redox events that are also ligand-centered in origin. All of the palladium complexes can be reversibly oxidized in two sequential one-electron steps; the binuclear complexes are reduced in a two-electron process whose reversibility depends on the Nindigo ligand substituent; the mononuclear palladium species show two one-electron reductions, only the first of which is quasi-reversible.
- Published
- 2011
170. Hypoxia-induced changes in standing balance
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Sarah R. Oakley, Jan Stepanek, Pao Vang, Linsey S. Wagner, Brie N. Noble, and Michael J. Cevette
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Adult ,Male ,medicine.medical_specialty ,business.industry ,Altitude Hypoxia ,Altitude ,Posturography ,Public Health, Environmental and Occupational Health ,Poison control ,Motor control ,Hypoxia (medical) ,Audiology ,Middle Aged ,Neuropsychological Tests ,Visual field ,Standing balance ,Feedback, Sensory ,medicine ,Physical therapy ,Humans ,medicine.symptom ,business ,Hypoxia ,Postural Balance - Abstract
BACKGROUND: A few studies in the literature have reported postural changes with hypoxia, but none have quantified the magnitude of change. Further understanding of this condition could have implications for patients at risk for falls, individuals undergoing acute altitude exposure, and pilots and commercial passengers. The objective of this study was to evaluate the effect of different levels of hypoxia (oxygen nitrogen mixtures) on postural standing balance using the computerized dynamic posturography (CDP) system. This improves upon previous protocols by manipulating vision and standing balance with a sway-referenced visual field and/or platform. Additionally, normative data were available for comparison with the cumulative test scores and scores for each condition. METHODS: Altitude hypoxia was simulated by use of admixing nitrogen to the breathing gas to achieve equivalent altitudes of 1524 m, 2438 m, and 3048 m. Subjects were evaluated using the CDP system. RESULTS: Subjects showed an overall trend toward decreased performance at higher simulated altitudes consistent with the initial hypothesis. Composite standing balance sway scores for the sensory organization subtest of CDP were decreased compared to baseline for simulated altitudes as low as 2438 m (mean sway scores: 81.92 at baseline; 81.85 at 1524 m; 79.15 at 2438 m; 79.15 at 3048 m). Reaction times to unexpected movements in the support surface for the motor control subtest (MCT) increased compared to baseline (mean composite scores: 133.3 at baseline; 135.9 ms at 1524 m; 138.0 ms at 2438 m; 140.9 ms at 3048 m). CONCLUSIONS: The CDP testing provided a reliable objective measurement of degradation of balance under hypoxic conditions. Language: en
- Published
- 2011
171. Atmospheric pressure plasma hydrophilic modification of a silicone surface
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Miguel Angel Martinez, M. Pantoja, B. R. Oakley, R.G. Dillingham, Juana Abenojar, and Noemí Encinas
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Materials science ,Materiales ,Scanning electron microscope ,Polymeric adhesion ,technology, industry, and agriculture ,Analytical chemistry ,Atmospheric pressure plasma ,Surfaces and Interfaces ,General Chemistry ,Adhesion ,Surface energy ,Surfaces, Coatings and Films ,Contact angle ,chemistry.chemical_compound ,Silicone ,X-ray photoelectron spectroscopy ,chemistry ,Mechanics of Materials ,Materials Chemistry ,Adhesive ,Wetting ,Composite material ,Hydrophobic recovery - Abstract
Presented in part at the 1st International Conference on Structural Adhesive Bonding (AB2011), Porto, Portugal, 7-8 July 2011. The aim of this study was the creation of a silicone hydrophilic surface prior to bonding. Modifications in wettability and adhesion properties of silicone were performed with an atmospheric plasma torch (APPT). Surface energy variations of the substrate, both pristine and APPT-treated, were evaluated through contact angle measurements, studying the hydrophobic recovery of the samples up to 24 hours of aging. Compositional and topographical changes induced by APPT and aging were studied by attenuated total multiple reflection mode infrared spectroscopy (ATR-FTIR), X-ray photoelectron spectroscopy (XPS), mechanical profilometry, scanning electron microscopy (SEM), and atomic force microscopy (AFM), respectively. Adhesion pull-off tests were performed on silicone-aluminium stud joints using three commercial adhesives, which were Sikaflex®-252, polyurethane-based, Loctite®-330, urethane methacrylate ester-based acrylic, and Terostat®-922, modified silicone. Although experimental data of all the bonding specimens led to an undesired adhesive failure, it was found that APPT-treated samples gave higher adhesive strength than the pristine ones, which was explained by the higher surface energy, thus more wettable material, after APPT. This effect remained stable for just 1 h, when the substrate began its hydrophobic recovery, reaching the original surface energy values after 24 h of aging. Financial support from the Universidad Carlos III de Madrid Foundation and Chemistry and Materials Technological Institute ‘‘Álvaro Alonso Barba’’ are acknowledged, as well as from the Universidad Pontificia Comillas (ICAI) (Spain).
- Published
- 2011
172. Genome-Based Deletion Analysis Reveals the Prenyl Xanthone Biosynthesis Pathway in Aspergillus nidulans
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Ruth Entwistle, Junko Yaegashi, Berl R. Oakley, Sofina Jain, Yi-Ming Chiang, James F. Sanchez, Clay C. C. Wang, and Jui-Hsiang Hung
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Xanthones ,Prenyltransferase ,Protein Prenylation ,Biochemistry ,Genome ,Catalysis ,Article ,Aspergillus nidulans ,chemistry.chemical_compound ,Colloid and Surface Chemistry ,Prenylation ,Polyketide synthase ,Xanthone ,Gene ,Chromatography, High Pressure Liquid ,Sequence Deletion ,biology ,General Chemistry ,biology.organism_classification ,chemistry ,biology.protein ,Protein prenylation ,Spectrophotometry, Ultraviolet ,Genome, Fungal - Abstract
Xanthones are a class of molecules that bind to a number of drug targets and possess a myriad of biological properties. An understanding of xanthone biosynthesis at the genetic level should facilitate engineering of second-generation molecules and increasing production of first-generation compounds. The filamentous fungus Aspergillus nidulans has been found to produce two prenylated xanthones, shamixanthone and emericellin, and we report the discovery of two more, variecoxanthone A and epishamixanthone. Using targeted deletions that we created, we determined that a cluster of 10 genes including a polyketide synthase gene, mdpG, is required for prenyl xanthone biosynthesis. mdpG was shown to be required for the synthesis of the anthraquinone emodin, monodictyphenone, and related compounds, and our data indicate that emodin and monodictyphenone are precursors of prenyl xanthones. Isolation of intermediate compounds from the deletion strains provided valuable clues as to the biosynthetic pathway, but no genes accounting for the prenylations were located within the cluster. To find the genes responsible for prenylation, we identified and deleted seven putative prenyltransferases in the A. nidulans genome. We found that two prenyltransferase genes, distant from the cluster, were necessary for prenyl xanthone synthesis. These genes belong to the fungal indole prenyltransferase family that had previously been shown to be responsible for the prenylation of amino acid derivatives. In addition, another prenyl xanthone biosynthesis gene is proximal to one of the prenyltransferase genes. Our data, in aggregate, allow us to propose a complete biosynthetic pathway for the A. nidulans xanthones.
- Published
- 2011
173. Melatonin
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N. R. Oakley
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Melatonin ,medicine.medical_specialty ,Endocrinology ,Light effects on circadian rhythm ,Internal medicine ,Dark cycle ,medicine ,General Earth and Planetary Sciences ,Circadian rhythm ,Biology ,General Agricultural and Biological Sciences ,General Environmental Science ,medicine.drug - Published
- 1993
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174. Pelvic abscess after colon and rectal surgery — What is optimal management?
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Walter E. Longo, James Church, Victor W. Fazio, John R. Oakley, Jeffrey W. Milsom, and Ian C. Lavery
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Adult ,Male ,medicine.medical_specialty ,Time Factors ,Percutaneous ,medicine.medical_treatment ,Anastomosis ,Severity of Illness Index ,Inflammatory bowel disease ,Pelvis ,Colonic Diseases ,Postoperative Complications ,Recurrence ,Laparotomy ,medicine ,Humans ,Retrospective Studies ,APACHE II ,business.industry ,Gastroenterology ,General Medicine ,Prognosis ,medicine.disease ,Ulcerative colitis ,Abscess ,Colorectal surgery ,Surgery ,Rectal Diseases ,Diverticular disease ,Female ,business - Abstract
PURPOSE: The aim of this study was to compare treatment outcomes in the management of pelvic abscess (PA) after rectal surgery. METHODS: Over a 12-year period all PAs occurring in the patients undergoing colorectal resection were retrospectively reviewed. The APACHE II Score was used to stratify illness. RESULTS: Postoperative PA developed in 56 patients after cancer (32 percent), ulcerative colitis (26 percent), diverticular disease (24 percent), and Crohn's colitis (18 percent)/surgery. Overall, 24 (43 percent) of PAs were after operations for inflammatory bowel disease and 43(77 percent) of PAs were after intrapelvic intestinal anastomoses. PAs were treated by 1) antibiotics alone (11/56), 2) percutaneous computerized tomography-guided catheter drainage (13/56), 3) transperineal drainage (15/56), or 4) laparotomy (17/56). Recurrent PAs developed in 11/56 (19 percent) after initial treatment, of which 7 required additional surgery. These recurrences were evenly distributed between treatment groups. There were three deaths as a result of PA, two after laparotomy and one after percutaneous drainage. Long-term sequela in patients with intestinal anastomosis included loss of intestinal continuity (10/43) and anastomotic stenosis (7/43). There was no difference in APACHE II Score among the four treatment groups. The mortality rate was 75 percent among patients whose APACHE II Scores were greater than 15. The development of a PA after colon and rectal surgery was associated with a 5 percent mortality and 41 percent functional morbidity (23 percent permanent stoma and 18 percent symptomatic stricture rate). CONCLUSION: Using clinical judgment, if PA is amenable to computerized tomographyguided percutaneous or transperineal drainage, one of these techniques should be attempted initially in the hemodynamically stable nonseptic patient. Long-term functional disability is common after PA in rectosigmoid surgery in patients who undergo pelvic/intestinal anastomosis.
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- 1993
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175. Podium presentations
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E. F. Foley, P. W. Marcello, P. L. Roberts, J. J. Murray, J. A. Coller, M. C. Veidenheimer, D. J. Schoetz, P. B. McIntyre, J. H. Pemberton, B. G. Wolff, R. W. Beart, K. A. Kelly, R. R. Dozois, A. Sugita, T. Fukushima, H. Harada, M. Yamamoto, H. Shimada, J. J. Tjandra, V. W. Fazio, J. W. Milson, I. C. Lavery, J. R. Oakley, J. M. Fabre, L. A. Karch, J. J. Bauer, S. R. Gorfine, I. M. Gelernt, A. M. Metcalf, G. Varilek, J. O. Keck, D. C. Hoffmann, S. A. Sgambati, W. V. Sardella, B. C. Marts, W. E. Longo, A. M. Vernava, D. J. Kennedy, G. L. Daniel, I. Jones, K. S. Venkatesh, L. W. Diamond, D. M. Larson, P. J. Ramanujam, J. R. Hicks, C. N. Ellis, W. S. Blakemore, S. D. Nathanson, M. D. Linden, P. Tender, R. J. Zarbo, L. Nelson, J. Bannon, G. Marks, J. Zhou, M. Mohiuddin, J. Marks, C. W. Pollard, S. Nivatvongs, A. Rojanasakul, D. M. Ilstrup, N. J. Speziale, T. J. Saclarides, D. B. Rubin, D. J. Szeluga, P. J. Morgado, L. G. Gomez, Reis J. A. Neto, F. A. Quilici, F. Cordeiro, J. A. Reis, S. Nitecki, P. Benn, M. G. Sarr, L. H. Weiland, A. Elhadad, F. Rouffet, P. Baillet, T. Akasu, Y. Moriya, K. Hojo, K. Sugihara, H. Oshima, S. K. Liu, J. M. Church, J. R. Kirkpatrick, C. L. Danielson, J. M. Dominguez, S. M. Jakate, M. H. Savin, W. J. Altringer, C. S. Lee, M. P. Spencer, R. D. Madoff, R. C. Barrett, M. A. Oster, P. Durdey, B. L. Stein, R. J. Staniunas, H. Grewal, J. G. Guillem, S. Quan, W. E. Enker, A. M. Cohen, W. F. van Tets, H. C. Kuijpers, B. A. Kerner, W. E. Wise, R. W. Golub, M. W. Arnold, P. S. Aguilar, B. J. Pernikoff, T. E. Eisenstat, R. J. Rubin, G. C. Oliver, E. P. Salvati, P. J. Lunniss, A. H. Sultan, P. G. Barker, P. Armstrong, C. I. Bartram, R. K. S. Phillips, W. R. Schouten, J. W. Briel, J. J. A. Auwerda, J. R. Harnsberger, P. L. Robbins, G. W. Brabbee, A. M. Ryhammer, K. M. Bek, F. Hanberg-Sørensen, S. Laurberg, S. D. Hoff, H. R. Bailey, D. R. Butts, E. Max, K. W. Smith, L. F. Zamora, G. B. Skakun, K. S. Khanduja, H. Lee, R. Spencer, J. S. Wiseman, A. J. Senagore, I. M. Bain, J. Oliff, L. Min, J. Neoptolomos, M. R. B. Keighley, T. J. O'Kelly, J. Davies, A. F. Brading, N. J. McC Mortensen, J.-G. Park, H. J. Han, M. S. Kang, Y. Nakamura, G. S. Goldberg, B. A. Orkin, L. E. Smith, P. R. Fleshner, M. I. Freilich, A. P. Meagher, W. J. Adams, D. Z. Lubowski, D. W. King, M. Moran, F. Opelka, A. Timmcke, T. Hicks, J. B. Gathright, S. Y. Leu, H. Hsu, P. A. Dean, P. S. Ramsey, H. Nelson, G. Philpott, B. Siegel, S. Schwarz, J. Fleshman, M. Welch, J. Connett, W. D. Buie, D. R. Johnson, J. A. Heine, W. D. Wong, D. A. Rothenberger, S. M. Goldberg, A. Shafik, A. MacDonald, J. W. Craig, I. G. Finlay, J. N. Baxter, T. C. Muir, S. Parikh, R. P. Gold, L. Gottesman, R. Annibali, T. Öresland, T. Hallgren, S. Fasth, L. Hultén, R. Farouk, G. S. Duthie, A. B. MacGregor, D. C. C. Bartolo, M. E. R. Williamson, W. G. Lewis, P. J. Holdsworth, N. Hall, P. J. Finan, D. Johnston, F. Seow-Choen, H. S. Goh, R. W. Motson, C. J. Walsh, E. Mooney, H. J. Yamashita, R. F. Hartmann, M. Seccia, C. Menconi, G. Ghiselli, E. Cavina, M. C. Salomon, A. Ferrara, S. W. Larach, P. R. Williamson, E. M. Bass, C. P. Orsay, B. Firfer, V. Ramakrishnan, H. Abcarian, A. J. Bufo, S. Feldman, G. A. Daniels, R. C. Lieberman, P. B. Loder, M. A. Kamm, R. J. Nicholls, C. K. Kum, S. S. Ngoi, P. M. Y. Goh, Y. Tekant, J. R. Isaac, J. T. Gerstle, G. L. Kauffman, and W. A. Koltun
- Subjects
Gastroenterology ,General Medicine - Published
- 1993
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176. Long-term follow-up of strictureplasty in Crohn's disease
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Ian C. Lavery, Victor W. Fazio, John R. Oakley, James M. Church, Jeffrey W. Milsom, and Joe J. Tjandra
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Adult ,Male ,Reoperation ,medicine.medical_specialty ,Adolescent ,Fistula ,medicine.medical_treatment ,Gastroenterology ,Postoperative Complications ,Crohn Disease ,Recurrence ,Internal medicine ,medicine ,Strictureplasty ,Humans ,Ileitis ,Abscess ,Aged ,Crohn's disease ,business.industry ,General Medicine ,Middle Aged ,medicine.disease ,Colorectal surgery ,Surgery ,Stenosis ,Female ,Complication ,business ,Intestinal Obstruction ,Follow-Up Studies - Abstract
Because Crohn's disease of the small bowel is often diffuse, strictureplasty has been advocated as an alternative or adjunct to resection(s) of strictured segments. We reviewed 116 patients with obstructive Crohn's disease undergoing 452 primary strictureplasties (Heineke-Mikulicz, 405; Finney, 47). The median age was 34 years (range, 13-72 years); the male-to-female ratio 1.4:1; and the median follow-up was three years (range, six months to seven years). Seventy-six patients (66 percent) had at least one previous small bowel resection. Perforative disease was present in 18 patients (15 percent), and synchronous resections were performed in 71 patients (61 percent). The median number of strictureplasties was three (range, 1-15). There was no mortality. Septic complications (intra-abdominal abscess/fistula) occurred in seven patients (6 percent), and reoperation for sepsis was needed in two patients. Relief of obstructive symptoms was achieved in 99 percent of the patients. After surgery, the median weight gain was 4 kg, and two-thirds of the patients were weaned off steroids. Symptomatic recurrence occurred in 28 patients (24 percent), and 17 patients (15 percent) needed reoperation. Rates of restricture and new stricture/perforative disease were 2.8 percent and 24 percent, respectively.
- Published
- 1993
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177. Similar functional results after restorative proctocolectomy in patients with familial adenomatous polyposis and mucosal ulcerative colitis
- Author
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John R. Oakley, James M. Church, Jeffrey W. Milsom, Victor W. Fazio, Ian C. Lavery, and Joe J. Tjandra
- Subjects
Adult ,Male ,medicine.medical_specialty ,Adolescent ,medicine.medical_treatment ,Anastomosis ,Gastroenterology ,Familial adenomatous polyposis ,Internal medicine ,Humans ,Medicine ,In patient ,Child ,Defecation ,Retrospective Studies ,business.industry ,Proctocolectomy ,Proctocolectomy, Restorative ,General Medicine ,Pouchitis ,Middle Aged ,medicine.disease ,Ulcerative colitis ,Adenomatous Polyposis Coli ,Quality of Life ,Colitis, Ulcerative ,Female ,Surgery ,Pouch ,business ,Follow-Up Studies - Abstract
Restorative proctocolectomy (RP) is generally considered to achieve better results in patients with familial adenomatous polyposis (FAP) than in those with mucosal ulcerative colitis (MUC). We studied 39 pairs of patients (FAP versus MUC), individually matched for surgeon (n = 4), types of ileal pouch (19 S-pouches and 20 J-pouches), technique of ileal pouch-anal anastomosis (21 stapled, 18 handsewn with mucosectomy), duration of follow-up after pouch function (median: 32 months; range: 6 months to 8.5 years), age (median: 30 years; range: 12 to 60 years), and gender (male-to-female ratio: 1.4:1.0). The median duration of operation (3.2 hours), hospital stay (9 days), and the amount of blood loss (about 650 mL) were similar between the two groups. The patients in the MUC group tended to have a higher overall complication rate (28% versus 21%) and more pouch-related septic complications (13% versus 8%, p = 0.6 by chi 2 analysis). Functional results were similar for daytime (median: 5 per day) and nighttime (median: 1 per night) stool frequency and the median duration that defecation could be deferred (median: about 1.5 hours). Perfect continence was present in 34 (87%) patients during the day and in 19 (49%) patients during the night in each group. The use of antidiarrheal medications did not differ between the two groups. According to an analogue scale (from 1 to 10, with 10 being best), the quality of life and health and satisfaction with outcome (median score: 9) were identical between the groups. Thus, in closely matched groups of patients with FAP and MUC, the functional outcome after RP was similar. However, pouchitis was more common in the MUC group (33% versus 10%, p0.05 by chi 2 analysis).
- Published
- 1993
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178. Clinical and pathologic factors associated with delayed diagnosis in solitary rectal ulcer syndrome
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Victor W. Fazio, James M. Church, Ian C. Lavery, John R. Oakley, Joe J. Tjandra, Jeffrey W. Milsom, and Robert E. Petras
- Subjects
Adult ,Male ,medicine.medical_specialty ,Time Factors ,Adolescent ,Rectum ,Inflammatory bowel disease ,Gastroenterology ,Internal medicine ,Prolapse ,medicine ,Humans ,Diagnostic Errors ,Rectal Polyp ,Ulcer ,Aged ,Retrospective Studies ,business.industry ,Rectal Ulcer ,Syndrome ,General Medicine ,Middle Aged ,medicine.disease ,Solitary rectal ulcer syndrome ,Ulcerative colitis ,digestive system diseases ,Colorectal surgery ,Rectal prolapse ,Rectal Diseases ,Treatment Outcome ,medicine.anatomical_structure ,Female ,business - Abstract
Solitary rectal ulcer syndrome (SRUS) often goes unrecognized or is misdiagnosed. Of 98 patients with a final clinicopathologic diagnosis of SRUS, an initially incorrect diagnosis had been made in 25 patients (26 percent). In these 25 patients with a misdiagnosis, the median age was 43 years and the female-to-male ratio was 3.2∶1. The median duration of incorrect diagnosis was five years (range, three months to 30 years), and seven patients received prednisone (>30 mg/day) for a mistaken diagnosis of inflammatory bowel disease. The main clinical symptoms were rectal bleeding (84 percent) and a disturbance of bowel function (56 percent). Rectal prolapse was present in 13 patients. Original rectal biopsy specimens from 23 patients were reviewed; inadequate specimens and failure to recognize diagnostic features of SRUS contributed to delayed diagnosis in 13 and 10 patients, respectively. The most common clinicopathologic mis-diagnoses in SRUS patients with rectal ulcers or mucosal hyperemia were Crohn's disease and mucosal ulcerative colitis. In patients with “polypoid” SRUS, diagnostic confusion was usually with a neoplastic polyp. Persistent bowel symptoms and rectal lesions led to review of the presentations and repeat biopsy directed toward the edge of the rectal ulcers or from within the polypoid or hyperemic rectal lesions, finally establishing the diagnosis of SRUS. Intractable symptoms led to surgery in 15 patients (60 percent), with symptomatic improvement in over two-thirds.
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- 1993
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179. The role of decay accelerating factor in the immunopathogenesis of cytomegalovirus infection
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Ismail S El-Amouri, Oliver R. Oakley, Feng Lin, C. M. Ko, Yajarayma J. Tang-Feldman, and Mohammad Bani-Ahmad
- Subjects
Gene Expression Regulation, Viral ,Lung Diseases ,Male ,Muromegalovirus ,Translational Studies ,Immunology ,Biology ,CD8-Positive T-Lymphocytes ,Virus ,Interferon-gamma ,Mice ,Immune system ,Interferon ,Splenocyte ,medicine ,Immunology and Allergy ,Animals ,Decay-accelerating factor ,Mice, Knockout ,CD55 Antigens ,Tumor Necrosis Factor-alpha ,fungi ,Herpesviridae Infections ,Mice, Inbred C57BL ,Viral replication ,DNA, Viral ,Host-Pathogen Interactions ,Tumor necrosis factor alpha ,CD8 ,Spleen ,medicine.drug - Abstract
Summary A wide variety of the host immune elements play an influential role in the defence against cytomegalovirus (CMV) infection. However, the role of complement in the clearance of CMV infection is less well studied. Decay accelerating factor (DAF/CD55) is a membrane-bound complement regulatory protein that inhibits the formation and accelerates the decay of C3-convertase. Here we hypothesize that murine CMV (MCMV) utilizes DAF as an immunoevasive strategy through down-regulation of host adaptive responses against the virus. To test our hypothesis, DAF knock-out (DAF KO) C57BL/6 mice and wild-type (WT) littermates were infected with a sublethal dose of MCMV, and their immune responses were compared. WT mice lost 7·8% of their initial weight within the first 4 days after infection and quickly began to recover. This is in contrast to the DAF KO mice, that lost a total of 19·4% of their initial weight and did not start recovery until 6 days post-infection. Flow cytometric analysis of lung digests revealed that infected DAF KO mice had a significantly increased infiltration of inflammatory cells, the majority being CD8+ T lymphocytes. Serum levels of tumour necrosis factor (TNF)-α and interferon (IFN)-γ were also increased markedly in the DAF KO mice compared to the infected WT mice. More interestingly, increased viral genome copies (DNA) in the splenocytes of DAF KO mice was accompanied with mRNA transcripts in the DAF KO mice, an indication of active viral replication. These data suggest an intriguing effect of reduced DAF expression on host responses following in vivo MCMV infection.
- Published
- 2010
180. Pituitary-ovary-spleen axis in ovulation
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Oliver R. Oakley, Michele L. Frazer, and CheMyong Ko
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Ovulation ,medicine.medical_specialty ,endocrine system ,Endocrinology, Diabetes and Metabolism ,media_common.quotation_subject ,Physiology ,Spleen ,Ovary ,Biology ,Luteal phase ,Article ,Endocrinology ,Internal medicine ,Leukocyte Trafficking ,Reproductive biology ,medicine ,Leukocytes ,Humans ,media_common ,Extramural ,medicine.anatomical_structure ,Pituitary Gland ,Female - Abstract
Leukocytes are rapidly recruited to the preovulatory ovary and play a crucial role as facilitators of ovulation and luteal formation. In this article, recent findings on leukocyte trafficking to the ovary, as well as the physiological role of leukocytes in the ovary, will be summarized and discussed. We then explore the novel hypothesis that the hypothalamus-pituitary-ovarian (HPO) axis might include the spleen as a reservoir of leukocytes by summarizing recent reports on this topic, both in the fields of immunology and reproductive biology.
- Published
- 2010
181. Recent advances in awakening silent biosynthetic gene clusters and linking orphan clusters to natural products in microorganisms
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Shu-Lin Chang, Clay C. C. Wang, Berl R. Oakley, and Yi-Ming Chiang
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Genetics ,Biological Products ,Natural product ,Microbial Genomes ,Extramural ,Computational biology ,Biology ,Biochemistry ,Genome ,Natural (archaeology) ,Article ,Chromatin ,Analytical Chemistry ,chemistry.chemical_compound ,Broad spectrum ,chemistry ,Multigene Family ,Gene Silencing ,Gene ,Ribosomes ,Genome, Bacterial - Abstract
Secondary metabolites from microorganisms have a broad spectrum of applications, particularly in therapeutics. The growing number of sequenced microbial genomes has revealed a remarkably large number of natural product biosynthetic clusters for which the products are still unknown. These cryptic clusters are potentially a treasure house of medically useful compounds. The recent development of new methodologies has made it possible to begin unlock this treasure house, to discover new natural products and to determine their biosynthesis pathways. This review will highlight some of the most recent strategies to activate silent biosynthetic gene clusters and to elucidate their corresponding products and pathways.
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- 2010
182. Increased morbidity and mortality in murine cytomegalovirus-infected mice following allogeneic bone marrow transplant is associated with reduced surface decay accelerating factor expression
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Oliver R. Oakley, Claire Pomeroy, CheMyong Ko, Mohammad Bani-Ahmad, Yajarayma J. Tang-Feldman, Ismail S El-Amouri, and F. Lin
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CD4-Positive T-Lymphocytes ,T cell ,Immunology ,Congenital cytomegalovirus infection ,Vascular Cell Adhesion Molecule-1 ,chemical and pharmacologic phenomena ,Cell Count ,CD8-Positive T-Lymphocytes ,medicine.disease_cause ,Lymphocyte Activation ,Herpesviridae ,Immediate-Early Proteins ,Interferon-gamma ,Mice ,Betaherpesvirinae ,medicine ,Immunology and Allergy ,Cytotoxic T cell ,Animals ,Transplantation, Homologous ,Lymphocytes ,Decay-accelerating factor ,Complement Activation ,Lung ,Bone Marrow Transplantation ,Mice, Knockout ,Mice, Inbred BALB C ,biology ,CD55 Antigens ,Body Weight ,Animal Models ,biology.organism_classification ,medicine.disease ,Intercellular Adhesion Molecule-1 ,Survival Analysis ,Transplantation ,medicine.anatomical_structure ,surgical procedures, operative ,Complement C3d ,Cytomegalovirus Infections ,Complement C3a ,Female ,Bone marrow - Abstract
Summary Infection with cytomegalovirus (CMV) remains a significant cause of morbidity and mortality following allogeneic bone marrow transplantation (allo-BMT). The manifestations of CMV infection can range from neurological and haematological abnormalities to diminished graft survival and, in extreme cases, death. Many clinical studies have shown a direct correlation between cytomegalovirus infection and increased morbidity and mortality post allo-BMT, yet the exact mechanism is not well understood. Although driven primarily by T cell responses, the role of complement activation in acute and chronic graft-versus-host disease (GVHD) has also become more evident in recent years. The present studies were performed to examine the effects of murine cytomegalovirus (MCMV) infection on decay accelerating factor (DAF) and MCMVs role in exacerbating morbidity and mortality post-allo-BMT. Mice infected previously with a sublethal dose of MCMV (1 × 105 plaque-forming units) have reduced expression of DAF on lung tissues and lymphocytes following allo-BMT. More importantly, mortality rates post-allo-BMT in recipient DAF knock-out mice receiving wild-type bone marrow are increased, similar to wild-type MCMV-infected recipient mice. Similarly, DAF knock-out mice showed greater intracellular interferon (IFN)-γ production by lung CD8 T cells, and infection with MCMV further exacerbated both intracellular IFN-γ production by CD8 T cells and mortality rates post-allo-BMT. Together, these data support the hypothesis that MCMV infection augments morbidity and mortality post-allo-BMT by reducing surface DAF expression.
- Published
- 2010
183. Inhibition of allogeneic inflammatory responses by the Ribonucleotide Reductase Inhibitors, Didox and Trimidox
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Vincent S Gallicchio, Howard L. Elford, Ismail S El-Amouri, Oliver R. Oakley, Mohammed S. Inayat, and Mohammad Bani-Ahmad
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business.industry ,Research ,lcsh:RM1-950 ,Clinical Biochemistry ,Trimidox ,Cell Biology ,Ribonucleotide reductase inhibitor ,Pharmacology ,Mixed lymphocyte reaction ,Molecular medicine ,Transplantation ,lcsh:Therapeutics. Pharmacology ,Ribonucleotide reductase ,Medicine ,Stem cell ,business ,Ex vivo - Abstract
Background Graft-versus-host disease is the single most important obstacle facing successful allogeneic stem cell transplantation (SCT). Even with current immunosuppressive therapies, morbidity and mortality rates are high. Current therapies including cyclosporine A (CyA) and related compounds target IL-2 signaling. However, although these compounds offer great benefit, they are also associated with multiple toxicities. Therefore, new compounds with a greater efficacy and reduced toxicity are needed to enable us to overcome this hurdle. Methods The allogeneic mixed lymphocyte reaction (MLR) is a unique ex vivo method to study a drug's action on the initial events resulting in T-cell activation and proliferation, synonymous to the initial stages of tissue and organ destruction by T-cell responses in organ rejection and Graft-versus-host disease. Using this approach, we examined the effectiveness of two ribonucleotide reductase inhibitors (RRI), Didox and Trimidox, to inhibit T-cell activation and proliferation. Results The compounds caused a marked reduction in the proliferative responses of T-cells, which is also accompanied by decreased secretion of cytokines IL-6, IFN-γ, TNF-α, IL-2, IL-13, IL-10 and IL-4. Conclusions In conclusion, these data provide critical information to justify further investigation into the potential use of these compounds post allogeneic bone marrow transplantation to alleviate graft-versus-host disease thereby achieving better outcomes.
- Published
- 2010
- Full Text
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184. Periovulatory Leukocyte Infiltration in the Rat Ovary
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CheMyong Ko, Po Ching Patrick Lin, Oliver R. Oakley, Jongki Cho, Mohammad Bani-Ahmad, Ismail S El-Amouri, and Hey Young Kim
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Ovulation ,medicine.medical_specialty ,endocrine system ,Time Factors ,CD3 Complex ,medicine.drug_class ,media_common.quotation_subject ,Estrous Cycle ,Biology ,Article ,Human chorionic gonadotropin ,Rats, Sprague-Dawley ,Leukocyte Count ,Endocrinology ,Cell Movement ,Internal medicine ,Follicular phase ,medicine ,Leukocytes ,Humans ,Animals ,reproductive and urinary physiology ,media_common ,Estrous cycle ,CD11b Antigen ,Ovary ,Proteolytic enzymes ,Flow Cytometry ,Intercellular Adhesion Molecule-1 ,medicine.disease ,Immunohistochemistry ,CD11c Antigen ,Rats ,Platelet Endothelial Cell Adhesion Molecule-1 ,Theca ,Splenectomy ,Leukocyte Common Antigens ,Female ,Gonadotropin ,Infiltration (medical) ,Gonadotropins ,hormones, hormone substitutes, and hormone antagonists ,Spleen - Abstract
Ovulation is preceded by intraovarian inflammatory reactions that occur in response to the preovulatory gonadotropin surge. As a main inflammatory event, leukocytes infiltrate the ovary and release proteolytic enzymes that degrade the extracellular matrix weakening the follicular wall, a required step for follicle rupture. This study aimed to quantitatively measure the infiltrating leukocytes, determine their cell types, and localize infiltration sites in the periovulatory rat ovary. Cycling adult and gonadotropin-stimulated immature rats were used as animal models. Ovaries were collected at five different stages of estrous cycle in the adult rats (diestrus, 1700 h; proestrus, 1500 h; proestrus, 2400 h; estrus, 0600 h; and metestrus, 1700 h) and at five different time points after superovulation induction in the immature rats (pregnant mare's serum gonadotrophin, 0 h; pregnant mare's serum gonadotrophin, 48 h; human chorionic gonadotropin, 6 h; human chorionic gonadotropin, 12 h; and human chorionic gonadotropin, 24 h). The ovaries were either dissociated into a single cell suspension for flow cytometric analysis or fixed for immunohistochemical localization of the leukocytes. Similar numbers of leukocytes were seen throughout the estrous cycle (approximately 500,000/ovary), except proestrus 2400 when 2-fold higher numbers of leukocytes were found (approximately 1.1 million/ovary). A similar trend of periovulatory rise of leukocyte numbers was seen in the superovulation-induced immature rat model, recapitulating a dramatic increase in leukocyte numbers upon gonadotropin stimulation. Both macrophage/granulocytes and lymphocytes were among the infiltrating leukocytes and were localized in the theca and interstitial tissues, where platelet-endothelial cell adhesion molecule-1 and intercellular adhesion molecule-1 may play roles in the transmigration of leukocytes, because their expressions correlates spatiotemporally with the infiltrating leukocytes. In addition, a strong inverse relationship between leukocyte numbers in the ovary and spleen, as well as significant reduction of leukocyte infiltration in the splenectomized rats, were seen, indicating that the spleen may serve as an immediate supplier of leukocytes to the periovulatory ovary.
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- 2010
185. Host-derived suppression of nematode reproductive and fitness genes decreases fecundity of Heterodera glycines Ichinohe
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JungHoon (Jay) Lee, Tom R. Oakley, Timothy C. Todd, Harold N. Trick, and Jiarui Li
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biology ,Base Sequence ,Nematoda ,Heterodera ,Reverse Transcriptase Polymerase Chain Reaction ,Soybean cyst nematode ,food and beverages ,RNA ,Plant Science ,biology.organism_classification ,Blotting, Northern ,Plants, Genetically Modified ,Molecular biology ,Transformation (genetics) ,Blotting, Southern ,Fertility ,RNA interference ,Gene expression ,Botany ,Genetics ,Animals ,Northern blot ,Soybeans ,Gene ,DNA Primers - Abstract
To control Heterodera glycines Ichinohe (soybean cyst nematode) in Glycine max (L.) Merr. (soybean), we evaluated the use of producing transgenic soybean seedlings expressing small interfering RNAs (siRNAs) against specific H. glycines genes. Gene fragments of three genes related to nematode reproduction or fitness (Cpn-1, Y25 and Prp-17) were PCR-amplified using specific primers and independently cloned into the pANDA35HK RNAi vector using a Gateway cloning strategy. Soybean roots were transformed with these constructions using a composite plant system. Confirmation of transformation was attained by PCR and Southern blot analysis. Transgene expression was detected using reverse transcription PCR (RT-PCR) and expression of siRNAs was confirmed in transgenic plants using northern blot analysis. Bioassays performed on transgenic composite plants expressing double-stranded RNA fragments of Cpn-1, Y25 and Prp-17 genes resulted in a 95, 81 and 79% reduction for eggs g(-1) root, respectively. Furthermore, we demonstrated a significant reduction in transcript levels of the Y25 and Prp-17 genes of the nematodes feeding on the transgenic roots via real-time RT-PCR whereas the expression of non-target genes were not affected. The results of this study demonstrate that over-expression of RNA interference constructs of nematode reproduction or fitness-related genes can effectively control H. glycines infection with levels of suppression comparable to conventional resistance.
- Published
- 2010
186. Unraveling polyketide synthesis in members of the genus Aspergillus
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Clay C. C. Wang, Nancy P. Keller, Yi-Ming Chiang, and Berl R. Oakley
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Architecture domain ,Computational biology ,Applied Microbiology and Biotechnology ,DNA sequencing ,Article ,Polyketide ,Protein structure ,Lovastatin ,Aspergillus ,Fungal protein ,biology ,Base Sequence ,General Medicine ,Pigments, Biological ,Mycotoxins ,biology.organism_classification ,Hydrocarbons ,Biosynthetic Pathways ,Protein Structure, Tertiary ,Metabolic pathway ,Biochemistry ,Oxidation-Reduction ,Polyketide Synthases ,Biotechnology ,Polyketide synthesis - Abstract
Aspergillus species have the ability to produce a wide range of secondary metabolites including polyketides that are generated by multi-domain polyketide synthases (PKSs). Recent biochemical studies using dissected single or multiple domains from PKSs have provided deep insight into how these PKSs control the structural outcome. Moreover, the recent genome sequencing of several species has greatly facilitated the understanding of the biosynthetic pathways for these secondary metabolites. In this review, we will highlight the current knowledge regarding polyketide biosynthesis in Aspergillus based on the domain architecture of non-reducing, highly reducing, and partially reducing PKSs, and PKS-non-ribosomal peptide synthetases.
- Published
- 2010
187. American Society of Colon and Rectal Surgeons 91st Annual Convention Podium and Poster abstracts
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G. C. Zenni, A. Ramos, S. Hull-Boiner, J. Fleshman, E. Cortesi, H. Harada, D. N. Armstrong, C. Nezhat, L. Capussotti, K. Suzuki, C. A. Walters, J. L. McCue, T. J. Saclarides, H. Brevinge, Patrick S. Ramsey, M. J. Solomon, C. Czyrko, Norma Daniel, V. A. Wolfe, A. J. Senagore, P. H. Gordon, D. C. C. Bartolo, R. Reiss, M. A. Luchtefeld, T. K. Schroeder, M. Trollope, J. M. Church, P. J. Holdsworth, A. Araujo, K. A. Easley, M. R. Moran, K. Hase, R. R. Dozois, P. S. Edelstein, R. D. Fry, P. M. Sagar, Heidi Nelson, I. Nudelman, M. Viamonte, H. Emsellem, G. Feifel, J. W. Milsom, Robert D. Riether, M. W. Arnold, W. E. WiseJr., F. J. Harford, H. Gutman, C. N. Ellis, S. M. Goldberg, M. G. Havenith, P. A. Cole, L. Petty, N. J. Birch, A. F. Brading, G. S. Duthie, T. Fukushima, E. W. Martin, G. B. Morandi, J. Braidt, K. Hacker, A. Sugita, N. S. Williams, K. Abraham, J. Konsten, T. L. Hull, D. Giannarelli, Walter Kikendall, G. J. LaValle, W. A. Koltun, P. L. Roberts, P. R. Williamson, B. M. Boman, D. Mascagni, P. A. Volpe, F. Michelassi, R. Saad, N. Davies, P. N. Ray, A. I. Neugut, T. Eisenstat, David Wingate, J. R. Oakley, B. Mitmaker, U. Hildebrandt, E. G. Balcos, G. E. Block, I. Bayer, A. E. Timmcke, S. M. Thompson, Z. Cohen, M. Tedesco, H. C. Kuijpers, J. Kewenter, C. L. Simmang, B. Bapat, D. A. Owen, R. E. Perry, Donald A. Peck, E. Haglind, A. D. Gulledge, James A. Sheets, M. Swash, Aaron Cohen, S. Schneebaum, W. G. Lewis, J. M. N. Jorge, John Parker, R. W. Golub, M. P. Bubrick, P. S. Aguilar, T. Schmid, I. Perkash, E. Salvati, P. Huth, J. Farmer, B. E. Diamond, S. L. Schmitt, R. McLeod, J. B. J. Fozard, G. Binter, D. R.E. Johnson, R. J. Davie, M. A. Christensen, C. Mojizisik, L. E. Smith, C. N. Elles, R. Bleday, P. A. Brantley, K. A. Forde, P. Willard, T. Yamanouchi, K. D. Gillespie, A. D. Spigelman, John J. Stasik, L. F. Sillin, Bard Cosman, M. T. Ott, E. Edwards, E. Lee, J. Heine, W. D. Wong, R. M. Devine, G. H. Slagle, J. M. MacKeigen, P. W. Marcello, B. Clements, H. Kynaston, P. Paul, E. Wang, W. E. Longo, F. Nezhat, R. D. Madoff, A. M. VernavaIII, T. G. Perry, D. J. Coyle, Jose G. Guillem, H. R. Bailey, M. L. Corman, K. James, S. Heymen, N. J. Mortensen, Devinder Kumar, S. A. Strong, I. C. Lavery, D. Kahn, J. C. Roberts, Eileen Sutter, E. McGannon, M. R. B. Keighley, W. L. AmbrozeJr., G. Morey, T. Wengert, D. Young, G. Y. Lauwers, B. A. Orkin, C. E. Christenson, W. E. Enker, P. Lechner, B. Orkin, M. E. Abel, B. Limberg, S. Galandiuk, R. Rubin, M. A. Tissaw, Irving M. Richman, Leonard L. Gunderson, D. A. Fenney, J. Cole, Brian M. Taylor, J. B. Gathright, P. P. Da Pian, T. H. Dailey, A. Berens, R. Fry, E. Pennington, R. D. SminkJr., Indru T. Khubchandani, J. A. Coller, O. B. Johansen, P. Paty, K. McKenna, V. M. Stolfi, P. M. Falk, S. C. Sessions, J. M. Anderson, Joseph Kokoszka, J. G. Williams, J. Wong, K. C. R. Farmer, A. A. Deutsch, K. S. Khanduja, H. W. Johnson, S. Y. Leu, D. Johnston, L. Gottesman, Y. S. Y. Chiu, K. Arai, R. J. Staniunas, R. S. Scoma, J. MacFie, Phyllis E. Bowen, M. Nino-Murcia, B. A. Kerner, J. Yates, E. Birnbaum, D. Franceschi, T. Pritchard, B. A. Taylor, H. Hsu, I. Kodner, J. A. Heine, G. L. Casillas, Robert W. Beart, E. M. McGannon, C. Tirelli, E. T. Goldstein, G. J. Weiner, N. C. Gupta, M. C. Veidenheimer, A. G. Thorson, S. A. Jenkins, P. Hartendorp, H. Tulchinsky, P. Shellito, P. B. Soeters, W. D. Buie, M. L. Eckhauser, G. R. Johnston, L. W. Lin, K. M. O'Toole, R. K. S. Phillips, Juan J. Nogueras, W. Reiter, Y. Moriya, R. T. Zera, G. H. Ballantyne, T. Le, J. P. Roberts, W. Conner, Richard H. Roettger, J. W. Sayre, J. D. Cheape, S. D. Fitzgerald, J. E. Martin, M. Anza, J. J. Tjandra, Herand Abcarian, J. J. Murray, Eli D. Ehrenpreis, E. Eisman, J. W. Fleshman, G. L. Daniel, A. C. Lowry, T. G. Lorentz, N. H. Hyman, F. Cavaliere, L. L. Jensen, Paul Sipe, D. A. Eastman, Y. Yamazaki, C. G. M. I. Baeten, Georgia Andrianopoulos, H. S. Goh, W. E. Mashas, J. K. Rowe, S. W. Larach, T. J. O'Kelly, R. M. Pitsch, M. Cosimelli, S. Jakate, E. Mitchell, L. K. Harding, J. Kraus, G. Friedberg, R. F. Hartmann, J. Jessurun, W. P. Mazier, M. J. Benson, R. L. Grotz, Adil H. Al-Humadi, J. P. Pena, I. J. Kodner, D. A. Rothenberger, J. M. Stone, K. W. Ecker, K. Ruoff, Richard E. Karulf, H. L. Young, S. P. Grobler, T. Saclarides, W. E. Lichliter, R. H. Grace, D. J. SchoetzJr., P. Lind, P. W. K. Lau, R. L. Cali, V. Fazio, H. Abdel-Nabi, T. Berk, V. D. Salanga, D. R. Antonenko, Steve Scoggin, John Dent, W. H. Boggs, R. Farouk, David E. Beck, John L. Skosey, M. R. Treat, R. S. McLeod, R. H. Lowndes, B. Bute, M. E. Pezim, V. W. Fazio, G. Di, W. DeVos, J. Tries, F. V. Lucas, Faith G. Davis, S. E. Oliver, P. Di Tora, D. Civalleri, G. Oliver, R. J. FitzgibbonsJr, K. B. Hosie, Steven D. Wexner, R. J. Davies, R. B. Hanson, E. D. Staren, Les Rosen, E. James, F. Ackroyd, C. Mitchell, M. P. Frick, Don Trepashko, E. Duberman, H. J. Järvinen, Richard C. Frazee, G. J. Blatchford, P. Bennett, J. H. Pemberton, T. R. Russell, Richard L. Nelson, E. Mannella, P. V. Vignati, K. Hojo, K. Kern, D. M. Meesig, C. H. Shatney, J. Heryer, M. Korst, J. C. Church, E. Ruggeri, W. G. Sheridan, David G. Jagelman, G. C. Ger, C. Falardeau, H. Stern, A. Ferrara, K. Sugihara, A. Shafik, P. B. Dobrin, J. C. Hebert, P. Luukkonen, M. Vierra, and E. H. VanBergen
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Convention ,medicine.medical_specialty ,business.industry ,Surgical oncology ,General surgery ,Public health ,Gastroenterology ,medicine ,General Medicine ,business ,Colorectal surgery - Published
- 1992
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188. Newly designed occluder pin for presacral hemorrhage
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Jeffrey W. Milsom, Ian C. Lavery, Vito M. Stolfi, James M. Church, Victor W. Fazio, and John R. Oakley
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Adult ,Male ,Sacrum ,medicine.medical_specialty ,Shaft length ,Improved method ,urologic and male genital diseases ,Sacral Vertebra ,Methods ,medicine ,Presacral space ,Humans ,Aged ,Sacrococcygeal Region ,business.industry ,Significant difference ,Rectum ,Gastroenterology ,General Medicine ,Hemostasis, Surgical ,Sagittal plane ,Surgery ,Radiography ,body regions ,medicine.anatomical_structure ,Female ,Cadaveric spasm ,business - Abstract
Conventional hemostatic measures are often unsatisfactory in presacral venous bleeding occurring during surgical mobilization of the rectum. We designed a new type of hemorrhage occluder pin, with a ridged shaft, which may be rapidly placed into the sacrum to control hemorrhage. The aims of this study were 1) to assess the best pin shaft length by measuring the thickness of human sacral vertebral bodies, 2) to measure the forces needed to pull the newly designed pin out of the human sacrum compared with conventionally shaped titanium thumbtacks, and 3) to assess clinically the efficacy of the new device. Four fresh cadaveric pelves were isolated and cut on a sagittal plane, and the thickness of each vertebral body was measured. Titanium pins, both with ridged and with smooth shafts, were used. Twelve-millimeter-shaft pins were used for S1 and S2, and 7-mm pins were used for S3, S4, and S5. Pins were inserted into each sacral vertebra, and the forces needed to extract them from the bone were measured by computerized dynamometry. Significantly more force was required to extract ridged vs. smooth pins, both with 12-mm and with 7-mm shafts. There was no significant difference between the forces needed to pull out 12-mm vs. 7-mm pins. The new pin was successfully used to stop presacral hemorrhage in three patients with no complications one, three, and six months after surgery. This newly designed hemorrhage occluder pin may represent an improved method of controlling presacral venous hemorrhage.
- Published
- 1992
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189. γ-Tubulin: the microtubule organizer?
- Author
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Berl R. Oakley
- Subjects
Tubulin ,Polarity (international relations) ,biology ,Microtubule ,biology.protein ,Basal body ,Microtubule organizing center ,macromolecular substances ,Cell Biology ,Astral microtubules ,Function (biology) ,Microtubule nucleation ,Cell biology - Abstract
Microtubules are composed predominantly of two related proteins: alpha- and beta-tubulin. These proteins form the tubulin heterodimer, which is the basic building block of microtubules. Surprisingly, recent molecular genetic studies have revealed the existence of gamma-tubulin, a new member of the tubulin family. Like alpha- and beta-tubulin, gamma-tubulin is essential for microtubule function but, unlike alpha- and beta-tubulin, it is not a component of microtubules. Rather, it is located at microtubule-organizing centres and may function in the nucleation of microtubule assembly and establishment of microtubule polarity.
- Published
- 1992
- Full Text
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190. Noncytotoxic drug therapy for intra-abdominal desmoid tumor in patients with familial adenomatous polyposis
- Author
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Victor W. Fazio, David G. Jagelman, Kunio Tsukada, Tom Schroeder, John R. Oakley, James M. Church, Ian C. Lavery, Craig R. George, and Ellen McGannon
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Adult ,Male ,medicine.medical_specialty ,Adenomatous polyposis coli ,medicine.medical_treatment ,Pain ,Fibroma ,Testolactone ,Gastroenterology ,Familial adenomatous polyposis ,Neoplasms, Multiple Primary ,Sulindac ,Pharmacotherapy ,Surgical oncology ,Internal medicine ,Antineoplastic Combined Chemotherapy Protocols ,medicine ,Humans ,Retrospective Studies ,Chemotherapy ,biology ,business.industry ,Remission Induction ,General Medicine ,medicine.disease ,digestive system diseases ,Surgery ,Adenomatous Polyposis Coli ,Abdominal Neoplasms ,biology.protein ,Female ,business ,Tamoxifen ,medicine.drug - Abstract
Forty of 416 patients with familial adenomatous polyposis were noted to have intra-abdominal desmoid tumors, and a subgroup of 16 were treated with noncytotoxic drug therapy. Drugs used were sulindac (14 patients), sulindac plus tamoxifen (3 patients), indomethacin (4 patients), tamoxifen (4 patients), progesterone (DEPO-PROVERA; Upjohn Co., Kalamazoo, MI) (2 patients), and testolactone (1 patient). Therapy with these drugs for continuous periods of six months or more resulted in three complete and seven partial remissions. When treated patients were compared with untreated patients (n = 12), there were significant benefits for the treated group, both in reduction of desmoid size and in improvement of symptoms, despite the inherent selection bias against this. Sulindac was the only drug used in enough patients to permit independent evaluation of its effect, with one complete and seven partial reductions of tumor size. Some patients had a delayed response to sulindac, with tumor shrinkage occurring after an initial period of tumor enlargement. When using sulindac for the treatment of desmoid tumors, this phenomenon should be considered.
- Published
- 1992
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191. In vivo analysis of the functions of gamma-tubulin-complex proteins
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Berl R. Oakley and Yi Xiong
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macromolecular substances ,Spindle Apparatus ,Biology ,Microtubules ,Spindle pole body ,Aspergillus nidulans ,Fungal Proteins ,Microtubule ,Tubulin ,Chromosome Segregation ,Humans ,Tubulin complex ,Fungal protein ,Sequence Homology, Amino Acid ,Microtubule organizing center ,Cell Biology ,Cell biology ,Spindle apparatus ,Multiprotein Complexes ,Gene Targeting ,Multipolar spindles ,Microtubule-Associated Proteins ,Microtubule-Organizing Center ,Polar microtubule ,Signal Transduction ,Research Article - Abstract
To enhance our understanding of the function(s) of gamma-tubulin-complex proteins (GCPs), we identified and analyzed the functions of the Aspergillus nidulans homologs of GCP2-GCP6 (here designated GCPB-GCBF). The gamma-tubulin small complex (gamma-TuSC) components, gamma-tubulin, GCPB and GCPC, are essential for viability and mitotic spindle formation, whereas GCPD-GCPF are not essential for viability, spindle formation or sexual reproduction. GCPD-GCPF function in reducing the frequency of chromosome mis-segregation and in the assembly of large gamma-tubulin complexes. Deletion of any of the gamma-TuSC components eliminates the localization of all GCPs to the spindle pole body (SPB), whereas deletion of GCPD-GCPF does not affect localization of gamma-TuSC components. Thus, GCPD-GCPF do not tether the gamma-TuSC to the SPB, but, rather, the gamma-TuSC tethers them to the SPB. GCPD-GCPF exhibit a hierarchy of localization to the SPB. Deletion of GCPF eliminates GCPD-GCPE localization to the SPB, and deletion of GCPD eliminates GCPE (but not GCPF) localization. All GCPs localize normally in a GCPE deletion. We propose a model for the structure of the gamma-tubulin complex and its attachment to polar microtubule organizing centers.
- Published
- 2009
192. Timely septation requires SNAD-dependent spindle pole body localization of the septation initiation network components in the filamentous fungus Aspergillus nidulans
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Rongzhong Shao, Cui Jing Tracy Zeng, Tania Nayak, An Chi Huang, Berl R. Oakley, Bo Liu, and Jung Mi Kim
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Scaffold protein ,Time Factors ,Spindle pole body localization ,Conidiation ,Down-Regulation ,Cell Cycle Proteins ,macromolecular substances ,Spindle Apparatus ,Spindle pole body ,Aspergillus nidulans ,Fungal Proteins ,Molecular Biology ,Mitosis ,Cytokinesis ,Genetics ,Fungal protein ,biology ,Sequence Homology, Amino Acid ,GTPase-Activating Proteins ,Cell Biology ,Actomyosin ,Articles ,biology.organism_classification ,Cell biology ,Protein Transport ,Mutation - Abstract
In the filamentous fungus Aspergillus nidulans, cytokinesis/septation is triggered by the septation initiation network (SIN), which first appears at the spindle pole body (SPB) during mitosis. The coiled-coil protein SNAD is associated with the SPB and is required for timely septation and conidiation. We have determined that SNAD acted as a scaffold protein that is required for the localization of the SIN proteins of SIDB and MOBA to the SPB. Another scaffold protein SEPK, whose localization at the SPB was dependent on SNAD, was also required for SIDB and MOBA localization to the SPB. In the absence of either SEPK or SNAD, SIDB/MOBA successfully localized to the septation site, indicating that their earlier localization at SPB was not essential for their later appearance at the division site. Unlike their functional counterparts in fission yeast, SEPK and SNAD were not required for vegetative growth but only for timely septation. Furthermore, down-regulation of negative regulators of the SIN suppressed the septation and conidiation phenotypes due to the loss of SNAD. Therefore, we conclude that SPB localization of SIN components is not essential for septation per se, but critical for septation to take place in a timely manner in A. nidulans.
- Published
- 2009
193. Density-Dependent Multiplication and Survival Rates in Heterodera glycines
- Author
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T C, Todd, J H, Long, and T R, Oakley
- Subjects
fungi ,Population Dynamics ,food and beverages - Abstract
Seasonal multiplication and overwinter survival are density-dependent in Heterodera glycines. At low to moderate population densities, the nematode is capable of large population increases on susceptible soybean cultivars and high rates of oversummer or overwinter survival in the absence of a host. To improve estimates of H. glycines multiplication and survival rates, egg densities were monitored for 12 cropping sequences across 10 years. Log-linear regression analysis was used to describe and compare density-dependent relationships. Growing-season change in H. glycines egg densities was density-dependent for all crops (susceptible soybean, resistant soybean, and nonhost), with slope estimates for the density-dependent relationship greater for susceptible soybean compared with a non-host crop. Overwinter population change also was density-dependent, with similar declines in survival rates observed for all crops as population densities increased. Survival was greater following susceptible soybean compared with resistant soybean, with an intermediate rate of survival associated with non-host crops. Survival estimates greater than 100% frequently were obtained at low population densities, despite attempts to account for sampling error. Rates of growing-season multiplication and survival, when standardized for population density, declined with year of the study. Standardized overwinter survival rates were inversely related to average daily minimum temperature and monthly snow cover.
- Published
- 2009
194. A gene cluster containing two fungal polyketide synthases encodes the biosynthetic pathway for a polyketide, asperfuranone, in Aspergillus nidulans
- Author
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Ashley D. Davidson, Yi-Ming Chiang, Edyta Szewczyk, Clay C. C. Wang, Nancy Keller, and Berl R. Oakley
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Genes, Fungal ,Biochemistry ,Genome ,Catalysis ,Aspergillus nidulans ,Article ,Fungal Proteins ,Polyketide ,Colloid and Surface Chemistry ,Gene cluster ,polycyclic compounds ,Secondary metabolism ,Furans ,Gene ,Benzofurans ,Genetics ,Fungal protein ,biology ,Chemistry ,Wild type ,General Chemistry ,biology.organism_classification ,Multigene Family ,Genome, Fungal ,Polyketide Synthases - Abstract
The genome sequencing of Aspergillus species including A. nidulans reveals that the products of many of the secondary metabolism pathways in these fungi have not been elucidated. Our examination of the 27 polyketide synthases (PKS) in A. nidulans revealed that one highly reduced PKS (HR-PKS, AN1034.3) and one non-reduced PKS (NR-PKS, AN1036.3) are located next to each other in the genome. Since no known A. nidulans secondary metabolites could be produced by two PKS enzymes, we hypothesized that this cryptic gene cluster produces an unknown natural product. Indeed after numerous attempts we found that the products from this cluster could not be detected under normal laboratory culture conditions in wild type strains. Closer examination of the gene cluster revealed a gene with high homology to a citrinin biosynthesis transcriptional activator (CtnR, 32% identity/47% similarity), a fungal transcription activator located next to the two PKSs. We replaced the promoter of the transcription activator with the inducible alcA promoter, which enabled the production of a novel polyketide that we have named asperfuranone. A series of gene deletions has allowed us to confirm that the two PKSs together with five additional genes comprise the asperfuranone biosynthetic pathway and leads us to propose a biosynthetic pathway for asperfuranone. Our results confirm and substantiate the potential to discover novel compounds even from a well-studied fungus by using a genomic mining approach.
- Published
- 2009
195. Effect of typical and atypical neuroleptics on the behavioural consequences of activation by muscimol of mesolimbic and nigro-striatal dopaminergic pathways in the rat
- Author
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N. R. Oakley, A. G. Hayes, and M. J. Sheehan
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Male ,Tegmentum Mesencephali ,Dopamine ,Striatum ,Pharmacology ,Nucleus accumbens ,Injections ,chemistry.chemical_compound ,Basal Ganglia Diseases ,Neural Pathways ,Limbic System ,medicine ,Animals ,Brain Chemistry ,Behavior, Animal ,Dose-Response Relationship, Drug ,Muscimol ,Dopaminergic ,Dopamine antagonist ,Rats, Inbred Strains ,Corpus Striatum ,Rats ,Substantia Nigra ,Ventral tegmental area ,medicine.anatomical_structure ,nervous system ,chemistry ,Dopaminergic pathways ,psychological phenomena and processes ,Antipsychotic Agents ,medicine.drug - Abstract
Direct injections of muscimol into the ventral tegmental area (VTA) or substantia nigra zona reticulata (SNR) have been used to selectively stimulate the mesolimbic and nigro-striatal dopamine pathways respectively. Such injections induced locomotor activity, rearing, sniffing and in some animals an intermittent grooming response. These responses were rapid in onset, dose-related and relatively short lasting (less than 40 min). Selective increases in dopamine turnover were seen in the nucleus accumbens and in the striatum following VTA and SNR injections of muscimol (100 ng) respectively. Haloperidol inhibited the behavioural consequences of VTA and SNR injections of muscimol with similar potency (ED50S 0.01-0.03 mg/kg IP), and fluphenazine did likewise (ED50S 0.05-0.16 mg/kg IP). However, thioridazine (ED50S VTA: 1.45-2.04 mg/kg IP, SNR 8.50-9.20 mg/kg IP) and in particular clozapine (ED50S VTA: 0.24-0.58 mg/kg IP, SNR: 6.10-9.70 mg/kg IP) were more potent at inhibiting the locomotor activity and sniffing responses due to VTA rather than SNR administered muscimol. Since dopamine D2 antagonists are believed to exert their anti-psychotic effects via an action on mesolimbic dopaminergic systems, and their ability to induce extrapyramidal side effects (EPS) is thought to be due to an action on nigro-striatal dopamine systems, these results suggest that the behavioural models described can be used to predict efficacy and side-effect liability of potential neuroleptic drugs.
- Published
- 1991
- Full Text
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196. γ-Tubulin is present in Drosophila melanogaster and homo sapiens and is associated with the centrosome
- Author
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Berl R. Oakley, M. Katherine Jung, and Yixian Zheng
- Subjects
Blotting, Western ,Molecular Sequence Data ,Mitosis ,macromolecular substances ,Biology ,Microtubules ,General Biochemistry, Genetics and Molecular Biology ,Spindle pole body ,Prophase ,Tubulin ,Microtubule ,Sequence Homology, Nucleic Acid ,Animals ,Humans ,Amino Acid Sequence ,RNA, Messenger ,Cloning, Molecular ,Genetics ,Tubulin complex ,Nucleic Acid Hybridization ,Microtubule organizing center ,DNA ,Cell biology ,Drosophila melanogaster ,Microscopy, Fluorescence ,Centrosome ,biology.protein ,HeLa Cells - Abstract
The mipA gene of A. nidulans encodes a newly discovered member of the tubulin superfamily of proteins, gamma-tubulin. In A. nidulans, gamma-tubulin is essential for nuclear division and microtubule assembly and is associated with the spindle pole body, the fungal microtubule organizing center. By low stringency hybridizations we have cloned cDNAs from D. melanogaster and H. sapiens, the predicted products of which share more than 66% amino acid identity with A. nidulans gamma-tubulin. gamma-Tubulin-specific antibodies stained centrosomes of Drosophila, human, and mouse cell lines. Staining was most intense in prophase through metaphase when microtubule assembly from centrosomes was maximal. These results demonstrate that gamma-tubulin genes are present and expressed in humans and flies; they suggest that gamma-tubulin may be a universal component of microtubule organizing centers; and they are consistent with an earlier hypothesis that gamma-tubulin is a minus-end nucleator of microtubule assembly.
- Published
- 1991
- Full Text
- View/download PDF
197. 90th Annual Convention Poster Presentations and Abstracts
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C. N. Ellis, D. J. Coyle, H. W. Boggs, G. W. Slagle, P. A. Cole, S. Kuramoto, O. Ihara, T. Oohara, J. Nichols, F. Opelka, J. B. Gathright, J. B. Green, J. B. Poulard, A. Ott, S. Bank, I. B. Margolis, A. Meagher, M. Stuart, J. A. Heine, D. A. Rothenberger, F. D. Nemer, C. E. Christenson, R. C. Saad, J. M. Church, V. W. Fazio, I. C. Lavery, J. R. Oakley, J. W. Milsom, T. K. Schroeder, L. Påhlman, G. Frykholm, B. Glimelius, H. Kashtan, M. Papa, B. Wilson, H. Stern, R. Zelnick, P. Haas, M. Ajlouni, T. Fox, E. Szilagy, B. J. Cummings, J. W. Fleshman, Z. Dreznick, R. D. Fry, I. J. Kodner, R. E. Perry, J. H. Pemberton, W. L. Litchy, A. Ferrara, K. E. Levin, R. B. Hanson, R. L. Cali, G. J. Blatchford, A. G. Thorson, M. A. Christenson, R. M. Pitsch, L. L. Jensen, A. C. Lowry, M. R. B. Keighley, M. Oya, J. Oritz, M. Pinho, J. Asperer, G. Chattaphaday, C. Baeten, J. Konsten, F. Spaans, P. Soeters, A. Habets, W. R. Schouten, J. G. H. Ruseler van Embden, J. J. A. Auwerda, P. M. Sagar, P. Goodwin, P. J. Holdsworth, D. Johnston, C. A. Bundy, D. M. Jacobs, M. P. Bubrick, H. Kashiwagi, F. Konishi, K. Kanazawa, D. O. Woodland, T. J. Saclarides, M. S. Bapna, Y. Kubota, K. Sunouchi, M. Ono, T. Muto, T. Masaki, K. Suzuki, M. Adachi, W. D. Wong, S. M. Goldberg, S. D. Wexner, N. Daniel, D. G. Jagelman, J. Christiansen, O. Rasmussen, B. -W. Zhu, J. G. Williams, J. L. Schottler, S. Heyman, F. Marchetti, A. E. Timmcke, T. C. Hicks, J. E. Ray, M. A. Bernstein, R. D. Madoff, P. F. Caushaj, R. J. Zarbo, C. K. Ma, H. Shida, T. Yamamoto, T. Machida, T. Imanari, J. Y. Wang, Y. T. You, R. P. Tang, J. S. Chen, C. R. Chang-Chien, K. Sugihara, K. Hojo, Y. Moriya, H. Hasegawa, B. Krueger, W. Warren, L. P. Faber, M. E. Abel, Y. S. Y. Chiu, T. R. Russell, P. A. Volpe, R. C. Frazee, J. Roberts, S. Symmonds, S. Snyder, J. Hendricks, R. Smith, N. Merchant, H. Hashmi, T. Scalea, R. Whelan, W. E. Longo, B. J. Gusberg, G. H. Ballantyne, T. Davidson, T. G. Allen-Mersh, B. Gazzard, A. J. G. Miles, C. Wastell, M. Viponde, A. Stotter, R. F. Miller, N. Fieldman, W. W. Slack, J. Tjandra, P. E. Savoca, J. T. Flannery, I. M. Modlin, K. Tsukada, K. Tazawa, E. C. Lavery, G. R. Voeller, G. Bunch, L. G. Britt, J. A. Reis Neto, F. A. Quilici, F. Cordeiro, J. A. Reis, J. B. Wojcik, S. R. Banerjee, D. L. Walters, D. A. Cherry, R. Bleday, J. P. Pena, J. G. Buls, R. Pascual, G. Tripodi, A. Padmanabhan, W. R. Schouter, J. D. Blankensteijn, S. Moenning, P. Huber, C. Simonton, C. Odom, E. Kaplan, S. Nightengale, P. C. Shah, H. F. Hashami, P. Kottmeier, F. Velcek, D. Klotz, R. L. Whelan, M. E. Sher, J. J. Bauer, I. Gelernt, D. P. Launer, A. Gerber, J. J. Nogueras, C. O. Finne, N. Sohn, M. A. Weinstein, R. N. Lugo, M. M. Eisenberg, J. Tsao, S. Galandiuk, W. B. Tuckson, S. Strong, J. R. Oakey, W. L. Ambroze, R. R. Dozois, H. A. Carpenter, A. H. Kartheuser, N. F. LaRusso, R. H. Wiesner, D. M. Ilstrup, C. D. Schleck, W. Ambroze, R. Beart, R. Dozois, B. Wolff, J. Pemberton, K. Kelly, R. Devine, S. Nivatvongs, P. Metzger, S. F. Phillips, A. R. Zinmeister, M. E. Pezim, P. Vignati, J. Cohen, T. J. Stahl, P. L. Roberts, D. J. Schoetz, J. J. Murray, J. A. Coller, M. C. Veidenheimer, Y. Yamazaki, M. B. Ribeiro, D. Sachar, T. M. Heimann, A. H. Aufses, A. J. Greenstein, S. J. Stryker, D. Green, R. S. McLeod, Z. Cohen, J. Cullen, G. R. Greenberg, C. S. Ho, R. Reznick, B. G. Wolff, J. Cangemi, P. Carryer, K. N. Jeejeebhoy, R. MacCarty, L. Weilland, A. J. Senagore, J. M. MacKeigan, J. Guillem, D. P. Ondrula, M. L. Prasad, R. L. Nelson, H. Abcarian, R. J. Coughlin, M. L. Corman, E. D. Prager, D. I. Borison, A. D. Bloom, T. J. Pritchard, E. McGannon, M. V. Sivak, R. van Stolk, S. Hull-Boiner, J. W. Milson, M. Sullivan, G. O. Rosato, J. M. Jorge, P. Durdey, M. J. Kennedy, M. Oster, J. Murray, W. C. Cirocco, L. C. Rusin, A. C. Brown, J. C. Reilly, P. Cataldo, M. A. Luchtefeld, W. P. Mazier, A. F. Wolkomir, F. Ruiz-Moreno, R. Alvarado-Cerna, U. Rodriguez, J. Amaro, B. A. Kerner, G. C. Oliver, T. E. Eisenstat, R. J. Rubin, E. P. Salvati, J. M. Dominguez, J. S. Coon, R. S. Weinstein, M. Kameyama, I. Fukuda, S. Imaoka, T. Iwanga, S. Kyzer, B. Mitmaker, P. H. Gordon, E. Wang, R. H. Grace, P. Gibbons, K. M. W. Scott, A. Berger, H. J. Mischinger, K. Arian-Schad, M. Davis, D. Miller, L. P. Fielding, L. R. Begin, A. M. Bell, A. Shafik, K. Abdel-Moneim, A. Khalid, R. M. Devine, R. W. Beart, L. J. Melton, S. S. Ngoi, J. Chia, P. Goh, E. Sim, P. Godwin, P. Quirke, R. C. Barrett, W. A. Koltun, R. J. Smith, D. Loehner, P. Roberts, M. Veidenheimer, D. Schoetz, G. Chattopadhyay, D. Kumar, K. Hosie, W. Kmiot, A. Mostaf, N. Tulley, I. Harding, R. E. Falcone, S. Wanamaker, S. A. Santanello, L. C. Carey, D. E. Rivera, P. Durdley, P. T. Gross, J. C. Sarles, A. Arnaud, I. Sielezneff, P. Orsoni, A. Joly, B. Limberg, V. M. Stolfi, I. Lavery, J. Oakley, J. Church, V. Fazio, H. J. Asbun, H. Castellanos, J. Asbun, E. R. Franko, R. R. Ivatury, D. Schwalb, R. Saad, T. Schroeder, A. J. Dziki, M. D. Duncan, J. W. Harmon, N. Saini, R. A. Malthaner, M. T. Fernicola, F. Z. Hakki, K. S. Trad, R. M. Ugarte, P. Ryan, H. R. Chang, B. Chavoshan, G. Barsoum, R. Bonardi, A. Scaramelo, A. Possebon, C. Peres, C. Röhrig, A. M. Kappas, J. Ortiz, H. A. Fan, J. Milsom, P. Lechner, P. Lind, H. Cesnik, K. S. Venkatesh, D. M. Larson, D. N. Morrison, P. J. Ramanujam, M. Rubbini, F. Mascoli, C. Mari, V. Bresadola, and I. Donini
- Subjects
Gastroenterology ,General Medicine - Published
- 1991
- Full Text
- View/download PDF
198. Identification and characterization of the asperthecin gene cluster of Aspergillus nidulans
- Author
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Ashley D. Davidson, Edyta Szewczyk, Clay C. C. Wang, C. Elizabeth Oakley, Yi-Ming Chiang, and Berl R. Oakley
- Subjects
Cytoplasm ,Hydrolases ,Genes, Fungal ,SUMO-1 Protein ,Mycology ,Secondary metabolite ,Applied Microbiology and Biotechnology ,Genome ,Aspergillus nidulans ,Mixed Function Oxygenases ,Fungal Proteins ,Gene cluster ,medicine ,Overproduction ,Secondary metabolism ,Gene ,Genetics ,Fungal protein ,Ecology ,biology ,Molecular Structure ,Mycotoxins ,biology.organism_classification ,Biosynthetic Pathways ,Multigene Family ,Polyketide Synthases ,Gene Deletion ,Food Science ,Biotechnology ,medicine.drug - Abstract
The sequencing of Aspergillus genomes has revealed that the products of a large number of secondary metabolism pathways have not yet been identified. This is probably because many secondary metabolite gene clusters are not expressed under normal laboratory culture conditions. It is, therefore, important to discover conditions or regulatory factors that can induce the expression of these genes. We report that the deletion of sumO , the gene that encodes the small ubiquitin-like protein SUMO in A. nidulans , caused a dramatic increase in the production of the secondary metabolite asperthecin and a decrease in the synthesis of austinol/dehydroaustinol and sterigmatocystin. The overproduction of asperthecin in the sumO deletion mutant has allowed us, through a series of targeted deletions, to identify the genes required for asperthecin synthesis. The asperthecin biosynthesis genes are clustered and include genes encoding an iterative type I polyketide synthase, a hydrolase, and a monooxygenase. The identification of these genes allows us to propose a biosynthetic pathway for asperthecin.
- Published
- 2008
199. The Tip Growth Apparatus of Aspergillus nidulans
- Author
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Miguel A. Peñalva, Stephen A. Osmani, Tetsuya Horio, Berl R. Oakley, Eduardo A. Espeso, Lidia Araújo-Bazán, Naimeh Taheri-Talesh, and Xiaowei Dou
- Subjects
Recombinant Fusion Proteins ,Green Fluorescent Proteins ,Hyphae ,Hyphal tip ,Exocyst ,Tropomyosin ,Models, Biological ,Aspergillus nidulans ,Exocytosis ,Fungal Proteins ,Live cell imaging ,Tip growth ,Molecular Biology ,Fungal protein ,biology ,Microfilament Proteins ,fungi ,Spitzenkörper ,Articles ,Cell Biology ,Bridged Bicyclo Compounds, Heterocyclic ,biology.organism_classification ,Cytochalasins ,Actins ,Endocytosis ,Cell biology ,Microscopy, Fluorescence ,Thiazolidines ,Benomyl ,SNARE Proteins - Abstract
11 páginas, 7 figuras -- PAGS nros. 1439-1449, Hyphal tip growth in fungi is important because of the economic and medical importance of fungi, and because it may be a useful model for polarized growth in other organisms. We have investigated the central questions of the roles of cytoskeletal elements and of the precise sites of exocytosis and endocytosis at the growing hyphal tip by using the model fungus Aspergillus nidulans. Time-lapse imaging of fluorescent fusion proteins reveals a remarkably dynamic, but highly structured, tip growth apparatus. Live imaging of SYNA, a synaptobrevin homologue, and SECC, an exocyst component, reveals that vesicles accumulate in the Spitzenkörper (apical body) and fuse with the plasma membrane at the extreme apex of the hypha. SYNA is recycled from the plasma membrane by endocytosis at a collar of endocytic patches, 1–2 μm behind the apex of the hypha, that moves forward as the tip grows. Exocytosis and endocytosis are thus spatially coupled. Inhibitor studies, in combination with observations of fluorescent fusion proteins, reveal that actin functions in exocytosis and endocytosis at the tip and in holding the tip growth apparatus together. Microtubules are important for delivering vesicles to the tip area and for holding the tip growth apparatus in position, This work was supported by a Deutsche Forschungsgemeinschaft fellowship to N.T.-T., Grant-in-Aid for Scientific Research 17570162 from Japan Society for the Promotion of Science (to T.H.), Dirección General de Investigación Científica y Tecnológica grants BIO2006-556 (to M.A.P.) and BFU2006-4185 (to E.A.E.), and National Institutes of Health grants GM-042564 (to S.A.O.) and GM-031837 (to B.R.O.). L.A.-B. is predoctoral fellow of the “Programa Nacional de Formación del Personal
- Published
- 2008
200. Performance characteristics of Mammalian Cell Culture process operating continuously with protein-free medium
- Author
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K. Matsuoka, R. Bliem, V. Taiariol, and R. Oakley
- Subjects
Glucose utilization ,Basal medium ,Chemistry ,business.industry ,Process (computing) ,Bioengineering ,General Medicine ,Process variable ,Applied Microbiology and Biotechnology ,Biochemistry ,Culture Media ,Oxygen ,Glucose ,Protein free ,Cell culture ,Tissue Plasminogen Activator ,Tumor Cells, Cultured ,Humans ,Process engineering ,business ,Melanoma ,Molecular Biology ,Plasminogen activator ,Biotechnology - Abstract
In this communication we briefly describe a continuous industrial process for the production of Tissue Plasminogen Activator (tPA), operating with a standard, basal medium (DME/F12). Process data of two culture runs has been chosen to present a performance profile over a production period of more than 3 mo. Developmental aspects of glucose utilization (as a process parameter) are briefly discussed.
- Published
- 1990
- Full Text
- View/download PDF
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