Search

An approach to the management of marine biodiversity was developed based on two levels of environmental diagnostics: (1) the characterization (to identify types), and (2) the evaluation (to define status and values). Both levels involve the production of maps, namely: (i) morphobathymetry and sedimentology; (ii) habitats; (iii) natural emergencies; (iv) degradation and risk; (v) weighted vulnerability; (vi) environmental quality; and, (vii) susceptibility to use. A general methodological aspect that must be stated first is the need of dividing the mapped area in territorial units corresponding to submultiples of the UTM grid and having different sizes according to the scale adopted. Territorial units (grid cells) are assigned to one of five classes of evaluation, ranging from high necessity of conservation or protection to non-problematic, unimportant or already compromised (according to the specific map) situations. Depending on the scale, these maps are suited for territorial planning (small scales, allowing for a synoptic view) or for administration and decision making (large scales, providing detail on local situations and problems). Mapping should be periodically repeated (diachronic cartography) to assure an efficient tool for integrated coastal zone management. [ABSTRACT FROM AUTHOR]

This error has now been corrected in the Supplementary Information 1 and 2 files that accompany the original Article. Correction to: I Scientific Reports i https://doi.org/10.1038/s41598-021-00348-w, published online 25 October 2021 The Supplementary Information 1 and 2 files published with this Article contained errors, where the title was incorrectly given as "Multi-trophic marker analysis of a Marquesan food web highlights how reef ecosystems might respond to a warmer and nutrient-rich ocean future.". [Extracted from the article]

Coral reefs are declining at an unprecedented rate as a consequence of local and global stressors. Using a 26-year monitoring database, we analyzed the loss and recovery dynamics of coral communities across seven islands and three archipelagos in French Polynesia. Reefs in the Society Islands recovered relatively quickly after disturbances, which was driven by the recovery of corals in the genus Pocillopora (84% of the total recovery). In contrast, reefs in the Tuamotu and Austral archipelagos recovered poorly or not at all. Across archipelagos, predation by crown-of-thorns starfish and destruction by cyclones outweighed the effects of heat stress events on coral mortality. Despite the apparently limited effect of temperature-mediated stressors, the homogenization of coral communities towards dominance of Pocillopora in the Society Archipelago and the failure to fully recover from disturbances in the other two archipelagos concern the resilience of Polynesian coral communities in the face of intensifying climate-driven stressors. • Long-term monitoring allows tracking coral communities through space and time • Crown-of-thorns outbreaks and cyclones heavily impacted corals in French Polynesia • Recovery dynamics in cover and compositional changes vary among archipelagos • Homogenization of genus Pocillopora may compromise the future resilience of reefs [ABSTRACT FROM AUTHOR]

Animal gut microbiomes are critical to host physiology and fitness. The gut microbiomes of fishes—the most abundant and diverse vertebrate clade—have received little attention relative to other clades. Coral reef fishes, in particular, make up a wide range of evolutionary histories and feeding ecologies that are likely associated with gut microbiome diversity. The repeated evolution of herbivory in fishes and mammals also allows us to examine microbiome similarity in relationship to diet across the entire vertebrate tree of life. Here, we generate a large coral reef fish gut microbiome dataset (n = 499 samples, 19 species) and combine it with a diverse aggregation of public microbiome data (n = 447) to show that host diet drives significant convergence between coral reef fish and mammalian gut microbiomes. We demonstrate that this similarity is largely driven by carnivory and herbivory and that herbivorous and carnivorous hosts exhibit distinct microbial compositions across fish and mammals. We also show that fish and mammal gut microbiomes share prominent microbial taxa, including Ruminoccocus spp. and Akkermansia spp., and predicted metabolic pathways. Despite the major evolutionary and ecological differences between fishes and mammals, our results reveal that their gut microbiomes undergo similar dietary selective pressures. Thus, diet, in addition to phylosymbiosis must be considered even when comparing the gut microbiomes of distantly related hosts. [ABSTRACT FROM AUTHOR]

Reef fish represent one of the most diverse vertebrate groups on Earth, with over 7,000 species distributed around the globe. This richness is not evenly distributed geographically. The Atlantic (AT) and the Eastern Pacific (EP) encompass 30% of the global fish fauna. These areas have been considered the most isolated from the marine biodiversity hotspot in the Indo‐Pacific due to distinct physical barriers, such as the Tethyan closure and the distance between the EP and the western Pacific. Despite their comparatively lower species richness, these realms host unique fish assemblages characterized by a remarkable proportion of regional endemics and species with large body size. Here, we present the largest database of life‐history traits and biogeographical and conservation aspects presently available for the reef fish fauna of the AT and the EP realms. The database includes 21 traits distributed into behavioral (home range, diel activity, group size, level in the water column, three measures of preferred temperature), morphological (maximum body size, size class, body shape, aspect ratio, caudal fin, mouth position), and ecological (trophic level, diet, spawning strategy, depth of occurrence, two allometric constants, pelagic larval duration, and life span), as well as biogeographical (geographic range index, range extension, species distribution in 20 marine provinces, latitude north and south of occurrence, total number of provinces where species occur, occurrence in the AT and EP), and conservation aspects (IUCN status, vulnerability and global market price). We compiled these data through a careful review of 104 local checklists published between 1982 and 2020, online repositories, local reports, books, and monographs on specific families or genera. We limited our database to localities situated between latitudes 51°N and 45°S that including shallow and upper mesophotic biogenic and/or rocky reefs habitats. Our database covers 2,198 species belonging to 146 families and 655 reef fish genera distributed in two marine realms (1,458 in the AT, 829 in the EP, and 89 in both realms) and 20 marine provinces. This database of reef fish offers the opportunity to explore novel ecological and evolutionary questions at different scales and provides tools for species conservation based on these traits. There are no copyright or proprietary restrictions for research or teaching purposes. [ABSTRACT FROM AUTHOR]

Somatic growth is a critical biological trait for organismal, population, and ecosystem-level processes. Due to its direct link with energetic demands, growth also represents an important parameter to estimate energy and nutrient fluxes. For marine fishes, growth rate information is most frequently derived from sagittal otoliths, and most of the available data stems from studies on temperate species that are targeted by commercial fisheries. Although the analysis of otoliths is a powerful tool to estimate individual growth, the time-consuming nature of otolith processing is one barrier for collection of comprehensive datasets across multiple species. This is especially true for coral reef fishes, which are extremely diverse. Here, we provide back-calculated size-at-age estimates (including measures of uncertainty) based on sagittal otoliths from 710 individuals belonging to 45 coral reef fish species from French Polynesia. In addition, we provide Von Bertalanffy growth parameters which are useful to predict community level biomass production. Measurement(s) growth Technology Type(s) otolithometry Sample Characteristic - Organism Actinopterygii Sample Characteristic - Environment coral reef Sample Characteristic - Location French Polynesia Machine-accessible metadata file describing the reported data: 10.6084/m9.figshare.13027817 [ABSTRACT FROM AUTHOR]

Diet has been identified as a major driver of reef fish lineage diversification, producing one of the most speciose vertebrate assemblages today. Yet, there is minimal understanding of how, when and why diet itself has evolved. To address this, we used a comprehensive gut content dataset, alongside a recently developed phylogenetic comparative method to assess multivariate prey use across a diverse animal assemblage, coral reef fishes. Specifically, we investigated the diversification, transitions and phylogenetic conservatism of fish diets through evolutionary time. We found two major pulses of diet diversification: one at the end-Cretaceous and one during the Eocene, suggesting that the Cretaceous–Palaeogene mass extinction probably provided the initial ecological landscape for fish diets to diversify. The birth of modern families during the Eocene then provided the foundation for a second wave of dietary expansion. Together, our findings showcase the role of extinction rebound events in shaping the dietary diversity of fishes on present-day coral reefs. [ABSTRACT FROM AUTHOR]

Assessments of ecosystem functioning are a fundamental ecological challenge and an essential foundation for ecosystem‐based management. Species trophic position (TP) is essential to characterize food web architecture. However, despite the intuitive nature of the concept, empirically estimating TP is a challenging task due to the complexity of trophic interaction networks. Various methods are proposed to assess TPs, including using different sources of organic matter at the base of the food web (the 'baseline'). However, it is often not clear which methodological approach and which baseline choices are the most reliable. Using an ecosystem‐wide assessment of a tropical reef (Marquesas Islands, with available data for 70 coral reef invertebrate and fish species), we tested whether different commonly used TP estimation methods yield similar results and, if not, whether it is possible to identify the most reliable method. We found significant differences in TP estimates of up to 1.7 TPs for the same species, depending on the method and the baseline used. When using bulk stable isotope data, the choice of the baseline significantly impacted TP values. Indeed, while nitrogen stable isotope (δ15N) values of macroalgae led to consistent TP estimates, those using phytoplankton generated unrealistically low TP estimates. The use of a conventional enrichment factor (i.e. 3.4‰) or a 'variable' enrichment factor (i.e. according to feeding guilds) also produced clear discrepancies between TP estimates. TPs obtained with δ15N values of source amino acids (compound‐specific isotope analysis) were close to those assessed with macroalgae. An opposite seasonal pattern was found, with significantly lower TPs in winter than in summer for most species, with particularly pronounced differences for lower TP species. We use the observed differences to discuss possible drivers of the diverging TP estimates and the potential ecological implications. Based on a case study from a remote coral reef ecosystem in the Pacific Ocean, this work analyses how several potential sources of organic matter (i.e. 'baselines') and calculation methods strongly affect assessments of trophic positions. We also demonstrated that seasonal temporality and feeding guild are important parameters to be considered. [ABSTRACT FROM AUTHOR]

Aim: Chronic anthropogenic stressors are increasing in intensity, making ecosystems more vulnerable to acute disturbances. Recovery processes are not always well understood due to the complexity of ecosystems and the lack of appropriate indicators. Temporal synchrony is a valuable metric for assessing whether fluctuations in abundance of different species are homogeneous or heterogeneous over time. Theoretically, a great diversity of responses by species facing disturbances is associated with a stable ecosystem, with species turnover guaranteeing the persistence of key ecological processes. We analysed the fluctuations of synchrony of a fish community to assess its resilience in an ecosystem exposed to various disturbances. Location: Moorea (French Polynesia). Methods: Using one of the longest time series available for coral reefs (ca. 35 years), we examined the variations in substrate cover, and the abundance, synchrony and composition of different fish trophic guilds. Multivariate analyses involving synchrony were used to determine the stability of trophic guilds. Results: Changes in fish community composition indicated incomplete taxonomic resilience. However, community synchrony was lower during periods of low coral cover, indicating greater response diversity, while total fish abundance remained fairly stable. Synchrony drop was due to relationships with coral cover that differed by trophic guild, or the differences in species responses within guilds. Some guilds such as sessile invertebrate feeders exhibited a strong homogeneity of response over time, indicating a greater vulnerability. We also highlighted that various types of disturbances had different effects on the synchrony of particular guilds. Main conclusions: The fish community appeared functionally resilient, with stability of total abundance and most trophic guilds. This could be a factor explaining the rapid recovery of Moorea's coral reefs from disturbances. However, the homogeneous responses of some fish groups to disturbances may compromise the reef recovery potential on the long term if disturbances become more frequent. [ABSTRACT FROM AUTHOR]

In spite of growing evidence that climate change may dramatically affect networks of interacting species, whether--and to what extent--ecological interactions can mediate species' responses to disturbances is an open question. Here we show how a largely overseen association such as that between hydrozoans and scleractinian corals could be possibly associated with a reduction in coral susceptibility to ever-increasing predator and disease outbreaks. We examined 2455 scleractinian colonies (from both Maldivian and the Saudi Arabian coral reefs) searching for non-randompatterns in the occurrence of hydrozoans on corals showing signs of different health conditions (i.e. bleaching, algal overgrowth, corallivory and different coral diseases). We show that, after accounting for geographical, ecological and co-evolutionary factors, signs of disease and corallivory are significantly lower in coral colonies hosting hydrozoans than in hydrozoan-free ones. This finding has important implications for our understanding of the ecology of coral reefs, and for their conservation in the current scenario of global change, because it suggests that symbiotic hydrozoans may play an active role in protecting their scleractinian hosts from stresses induced by warming water temperatures. [ABSTRACT FROM AUTHOR]

Consumers mediate nutrient cycling through excretion and egestion across most ecosystems. In nutrient‐poor tropical waters such as coral reefs, nutrient cycling is critical for maintaining productivity. While the cycling of fish‐derived inorganic nutrients via excretion has been extensively investigated, the role of egestion for nutrient cycling has remained poorly explored. We sampled the fecal contents of 570 individual fishes across 40 species, representing six dominant trophic guilds of coral reef fishes in Moorea, French Polynesia. We measured fecal macro‐ (proteins, carbohydrates, lipids) and micro‐ (calcium, copper, iron, magnesium, manganese, zinc) nutrients and compared the fecal nutrient quantity and quality across trophic guilds, taxa, and body size. Macro‐ and micronutrient concentrations in fish feces varied markedly across species. Genera and trophic guild best predicted fecal nutrient concentrations. In addition, nutrient composition in feces was unique among species within both trophic guilds (herbivores and corallivores) and genera (Acanthurus and Chaetodon). Particularly, certain coral reef fishes (e.g., Thalassoma hardwicke, Chromis xanthura, Chaetodon pelewensis and Acanthurus pyroferus) harbored relatively high concentrations of micronutrients (e.g., Mn, Mg, Zn and Fe, respectively) that are known to contribute to ocean productivity and positively impact coral physiological performances. Given the nutrient‐rich profiles across reef fish feces, conserving holistic reef fish communities ensures the availability of nutritional pools on coral reefs. We therefore suggest that better integration of consumer egestion dynamics into food web models and ecosystem‐scale processes will facilitate an improved understanding of coral reef functioning. [ABSTRACT FROM AUTHOR]

Coral reefs offer natural coastal protection by attenuating incoming waves. Here we combine unique coral disturbance-recovery observations with hydrodynamic models to quantify how structural complexity dissipates incoming wave energy. We find that if the structural complexity of healthy coral reefs conditions is halved, extreme wave run-up heights that occur once in a 100-years will become 50 times more frequent, threatening reef-backed coastal communities with increased waves, erosion, and flooding. [ABSTRACT FROM AUTHOR]

Ecological interactions uphold ecosystem structure and functioning. However, as species richness increases, the number of possible interactions rises exponentially. More than 6,000 species of coral reef fishes exist across the world's tropical oceans, resulting in an almost innumerable array of possible trophic interactions. Distilling general patterns in these interactions across different bioregions stands to improve our understanding of the processes that govern coral reef functioning. Here, we show that across bioregions, tropical coral reef food webs exhibit a remarkable congruence in their trophic interactions. Specifically, by compiling and investigating the structure of six coral reef food webs across distinct bioregions, we show that when accounting for consumer size and resource availability, these food webs share more trophic interactions than expected by chance. In addition, coral reef food webs are dominated by dietary specialists, which makes trophic pathways vulnerable to biodiversity loss. Prey partitioning among these specialists is geographically consistent, and this pattern intensifies when weak interactions are disregarded. Our results suggest that energy flows through coral reef communities along broadly comparable trophic pathways. Yet, these critical pathways are maintained by species with narrow, specialized diets, which threatens the existence of coral reef functioning in the face of biodiversity loss. [ABSTRACT FROM AUTHOR]

• Anthropogenic impacts, global change and natural disturbances threaten coral reefs. • A multi-factor reef recovery index (RI) based on the TOPSIS method was developed. • Recovery Index is based on variables classically considered in monitoring programs. • RI adequately ranges reefs based on their potential to recover from disturbance. Over the last two decades, coral reefs have experienced dire declines due to intensifying anthropogenic disturbances and climate change. Defining and quantifying coral reef resilience now represents a critical management objective, but there is still little consensus on the approach and the indices to be used. In this study, we develop a multi-factor reef recovery index based on the Technique for Order Preference by Similarity to an Ideal Solution (TOPSIS) method to assess the vulnerability of several insular coral reefs in the South Western Indian Ocean (SWIO) from 2016 to 2018. We showed, that in the wake of a regional bleaching event in 2016, the most isolated reefs of Europa, which is characterized by low direct human impact had the highest recovery potential. On the contrary, islands that are more prone to direct human influence (i.e. , La Reunion and Rodrigues) displayed the lowest recovery potential. [ABSTRACT FROM AUTHOR]

High species richness is thought to support the delivery of multiple ecosystem functions and services under changing environments. Yet, some species might performunique functional roleswhile others are redundant. Thus, the benefits of high species richness in maintaining ecosystem functioning are uncertain if functions have little redundancy, potentially leading to high vulnerability of functions.We studied the natural propensity of assemblages to be functionally buffered against loss prior to fishing activities, using functional trait combinations, in coral reef fish assemblages across unfished wilderness areas of the Indo-Pacific: Chagos Archipelago, New Caledonia and French Polynesia. Fish functional diversity in these wilderness areas is highly vulnerable to fishing, explained by species- and abundance-based redundancy packed into a small combination of traits, leaving most other trait combinations (60%) sensitive to fishing, with no redundancy. Functional vulnerability peaks for mobile and sedentary top predators, and large species in general. Functional vulnerability decreases for certain functional entities in New Caledonia, where overall functional redundancy was higher. Uncovering these baseline patterns of functional vulnerability can offer early warning signals of the damaging effects from fishing, and may serve as baselines to guide precautionary and even proactive conservation actions. [ABSTRACT FROM AUTHOR]

The global network of protected areas has rapidly expanded in the past decade and is expected to cover at least 30% of land and sea by 2030 to halt biodiversity erosion. Yet, the distribution of protected areas is highly heterogeneous on Earth and the social-environmental preconditions enabling or hindering protected area establishment remain poorly understood. Here, using fourteen socioeconomic and environmental factors, we characterize the multidimensional niche of terrestrial and marine protected areas, which we use to accurately establish, at the global scale, whether a particular location has preconditions favourable for paestablishment. We reveal that protected areas, particularly the most restrictive ones, over-aggregate where human development and the number of non-governmental organizations are high. Based on the spatial distribution of vertebrates and the likelihood to convert non-protected areas into strictly protected areas, we identify 'potential' versus 'unrealistic' conservation gains on land and sea, which we define as areas of high vertebrate diversity that are, respectively, favourable and unfavourable to protected area establishment. Where protected areas are unrealistic, alternative strategies such as other effective area-based conservation measures or privately protected areas, could deliver conservation outcomes., (© 2024. The Author(s).)

Anthropogenic pressures are restructuring coral reefs globally. Sound predictions of the expected changes in key reef functions require adequate knowledge of their drivers. Here we investigate the determinants of a poorly-studied yet relevant biogeochemical function sustained by marine bony fishes: the excretion of intestinal carbonates. Compiling carbonate excretion rates and mineralogical composition from 382 individual coral reef fishes (85 species and 35 families), we identify the environmental factors and fish traits that predict them. We find that body mass and relative intestinal length (RIL) are the strongest predictors of carbonate excretion. Larger fishes and those with longer intestines excrete disproportionately less carbonate per unit mass than smaller fishes and those with shorter intestines. The mineralogical composition of excreted carbonates is highly conserved within families, but also controlled by RIL and temperature. These results fundamentally advance our understanding of the role of fishes in inorganic carbon cycling and how this contribution will change as community composition shifts under increasing anthropogenic pressures., (© 2023. The Author(s).)

Human impact increasingly alters global ecosystems, often reducing biodiversity and disrupting the provision of essential ecosystem services to humanity. Therefore, preserving ecosystem functioning is a critical challenge of the twenty-first century. Coral reefs are declining worldwide due to the pervasive effects of climate change and intensive fishing, and although research on coral reef ecosystem functioning has gained momentum, most studies rely on simplified proxies, such as fish biomass. This lack of quantitative assessments of multiple process-based ecosystem functions hinders local and regional conservation efforts. Here we combine global coral reef fish community surveys and bioenergetic models to quantify five key ecosystem functions mediated by coral reef fishes. We show that functions exhibit critical trade-offs driven by varying community structures, such that no community can maximize all functions. Furthermore, functions are locally dominated by few species, but the identity of dominant species substantially varies at the global scale. In fact, half of the 1,110 species in our dataset are functionally dominant in at least one location. Our results reinforce the need for a nuanced, locally tailored approach to coral reef conservation that considers multiple ecological functions beyond the effect of standing stock biomass., (© 2022. The Author(s), under exclusive licence to Springer Nature Limited.)

Ecosystems face both local hazards, such as over-exploitation, and global hazards, such as climate change. Since the impact of local hazards attenuates with distance from humans, local extinction risk should decrease with remoteness, making faraway areas safe havens for biodiversity. However, isolation and reduced anthropogenic disturbance may increase ecological specialization in remote communities, and hence their vulnerability to secondary effects of diversity loss propagating through networks of interacting species. We show this to be true for reef fish communities across the globe. An increase in fish-coral dependency with the distance of coral reefs from human settlements, paired with the far-reaching impacts of global hazards, increases the risk of fish species loss, counteracting the benefits of remoteness. Hotspots of fish risk from fish-coral dependency are distinct from those caused by direct human impacts, increasing the number of risk hotspots by ~30% globally. These findings might apply to other ecosystems on Earth and depict a world where no place, no matter how remote, is safe for biodiversity, calling for a reconsideration of global conservation priorities., (© 2021. The Author(s).)

Climate change and consequent coral bleaching are causing the disappearance of reef-building corals worldwide. While bleaching episodes significantly impact shallow waters, little is known about their impact on mesophotic coral communities. We studied the prevalence of coral bleaching two to three months after a heat stress event, along an extreme depth range from 6 to 90 m in French Polynesia. Bayesian modelling showed a decreasing probability of bleaching of all coral genera over depth, with little to no bleaching observed at lower mesophotic depths (greater than or equal to 60 m). We found that depth-generalist corals benefit more from increasing depth than depth-specialists (corals with a narrow depth range). Our data suggest that the reduced prevalence of bleaching with depth, especially from shallow to upper mesophotic depths (40 m), had a stronger relation with the light-irradiance attenuation than temperature. While acknowledging the geographical and temporal variability of the role of mesophotic reefs as spatial refuges during thermal stress, we ought to understand why coral bleaching reduces with depth. Future studies should consider repeated monitoring and detailed ecophysiological and environmental data. Our study demonstrated how increasing depth may offer a level of protection and that lower mesophotic communities could escape the impacts of a thermal bleaching event., (© 2021 The Authors.)

We studied the food web structure and functioning of a coral reef ecosystem in the Marquesas Islands, French Polynesia, characterized by low coral cover, high sea surface temperature and meso- to eutrophic waters. The Marquesas constitute a relevant ecosystem to understand the functioning of low diversity reefs that are also subject to global change. A multi-tracer assessment of organic matter pathways was run to delineate ecosystem functioning, using analysis of fatty acids, bulk and compound specific stable isotope analysis and stable isotopes mixing models. Macroalgae and phytoplankton were the two major food sources fueling this food web with, however, some marked seasonal variations. Specifically, zooplankton relied on phytoplankton-derived organic matter and herbivorous fishes on macroalgae-derived organic matter to a much higher extent in summer than in winter (~ 75% vs. ~ 15%, and ~ 70 to 75% vs. ~ 5 to 15%, respectively) . Despite remarkably high δ 15 N values for all trophic compartments, likely due to local dynamics in the nitrogen stock, trophic levels of consumers were similar to those of other coral reef ecosystems. These findings shed light on the functioning of low coral cover systems, which are expected to expand worldwide under global change., (© 2021. The Author(s).)