199 results on '"Oleg N. Antzutkin"'
Search Results
152. The diethyl dithiophosphate complex of tetraphenylantimony(V) and its solvated form, [Sb(C6H5)4{S 2P(OC2H5)2}] · 1/2 C 6H6: Synthesis, crystal structure, and 13C, 31P CP/MAS NMR study. an example of monodentate coordination of dithio ligands
- Author
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Andrey V. Gerasimenko, Vladimir V. Sharutin, M. A. Pushilin, Oleg N. Antzutkin, M. A. Ivanov, Alexander V. Ivanov, P. M. Solozhenkin, and Anna-Carin Larsson
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Chemical shift anisotropy ,Denticity ,Diethyl dithiophosphate ,Stereochemistry ,X ray diffraction ,Materials Science (miscellaneous) ,Crystal structure ,Tensors ,Inorganic Chemistry ,chemistry.chemical_compound ,Chemical shift tensors ,Trigonal bipyramidal ,Desorption ,Molecule ,Physical and Theoretical Chemistry ,Benzene ,Anisotropy ,Nuclear magnetic resonance spectroscopy ,Asymmetry parameter ,Chemistry ,Chemical shift ,Solvent ,Trigonal bipyramidal molecular geometry ,Crystallography ,X-ray diffraction data ,Anisotropy parameters ,Monodentate coordination - Abstract
The O,O′-diethyl dithiophosphate complex of tetraphenylantimony(V) [Sb(C6H5)4{S2P(OC2H 5)2}] (I) and its benzene-solvated form I · 1/2C6H6 (II) were synthesized and studied by high-resolution solid-state 13C and 31P NMR (MAS NMR). The diethyl dithiophosphate (Dtph) groups in I and II were quantitatively characterized by the 31P chemical shift anisotropy (δaniso), the asymmetry parameter (η), and the principal values of chemical shift tensors (δ xx, δ yy, δ zz ). The calculation of the anisotropy parameters included construction of χ2 statistic diagrams from full 31P MAS NMR spectra. In both complexes, the Dtph groups were found to have mainly axially symmetric 31P chemical shift tensors (for δ zz < δ xx ≈ δ yy ) with similar anisotropy parameters (δaniso and η), which is due to their identical S-monodentate function. According to X-ray diffraction data, II has a trigonal bipyramidal (TBP) molecular structure with Smonodentate coordination of Dtph in the TBP axial position and outer-sphere position of the benzene molecule. The desorption of the outer-sphere benzene solvent molecules from structure II, which was noted in MAS NMR experiment, passes through the formation of three intermediate solvated forms with benzene content n < 1/2. © 2013 Pleiades Publishing, Ltd.
- Published
- 2013
153. Order-resolved sideband separation in magic-angle-spinning NMR. 31P NMR of oriented DNA fibers
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Malcolm H. Levitt, Oleg N. Antzutkin, Zhiyan Song, and Allan Rupprecht
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Magic angle ,Sideband ,Chemistry ,Physics::Optics ,General Physics and Astronomy ,Pulse sequence ,Molecular physics ,symbols.namesake ,Fourier transform ,Nuclear magnetic resonance ,Solid-state nuclear magnetic resonance ,symbols ,Magic angle spinning ,Physical and Theoretical Chemistry ,Anisotropy ,Spinning - Abstract
We report new radiofrequency pulse schemes for deriving the orientation distribution function of chemical shift anisotropy tensors in the nuclear magnetic resonance of ordered solids. Sample spinning at the magic-angle is combined with radio frequency pulse schemesfor spinning sideband separation. We separate the sidebands associated with molecular order using only 5 radiofrequency π-pulses and avoiding a three-dimentional Fourier transformation.
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- 1996
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154. Two-Dimensional Sideband Separation in Magic-Angle-Spinning NMR
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Oleg N. Antzutkin, S.C. Shekar, and Malcolm H. Levitt
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Magic angle ,Sideband ,Chemistry ,business.industry ,Isotropy ,General Engineering ,Pulse sequence ,Molecular physics ,Projection (linear algebra) ,Optics ,Magic angle spinning ,business ,Anisotropy ,Spinning - Abstract
A new method for separating isotropic and anisotropic chemical-shift interactions in magic-angle-spinning NMR is presented. The new method is based upon manipulation of the phases of spinning sidebands using sequences of five π pulses. A two-dimensional pulse scheme separates the spinning sidebands by order. The amplitudes of the spinning sidebands may be analyzed to obtain the principal values of the chemical-shift anisotropy. For sites with many sidebands, it is possible to improve the signal-to-noise ratio considerably by skew projection of the two-dimensional spectrum. Experimental demonstrations are presented.
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- 1995
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155. Solvation structures of water in trihexyltetradecylphosphonium-orthoborate ionic liquids
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Aatto Laaksonen, Sten Sarman, Lars Kloo, Sergei Glavatskih, Oleg N. Antzutkin, and Yong-Lei Wang
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Solvation ,General Physics and Astronomy ,Ionic bonding ,02 engineering and technology ,010402 general chemistry ,021001 nanoscience & nanotechnology ,01 natural sciences ,0104 chemical sciences ,chemistry.chemical_compound ,Molecular dynamics ,chemistry ,Computational chemistry ,Chemical physics ,Ionic liquid ,Molecule ,Polar ,Physical and Theoretical Chemistry ,Umbrella sampling ,Potential of mean force ,0210 nano-technology - Abstract
Atomistic molecular dynamics simulations have been performed to investigate effective interactions of isolated water molecules dispersed in trihexyltetradecylphosphonium-orthoborate ionic liquids (ILs). The intrinsic free energy changes in solvating one water molecule from gas phase into bulk IL matrices were estimated as a function of temperature, and thereafter, the calculations of potential of mean force between two dispersed water molecules within different IL matrices were performed using umbrella sampling simulations. The systematic analyses of local ionic microstructures, orientational preferences, probability and spatial distributions of dispersed water molecules around neighboring ionic species indicate their preferential coordinations to central polar segments in orthoborate anions. The effective interactions between two dispersed water molecules are partially or totally screened as their separation distance increases due to interference of ionic species in between. These computational results connect microscopic anionic structures with macroscopically and experimentally observed difficulty in completely removing water from synthesized IL samples and suggest that the introduction of hydrophobic groups to central polar segments and the formation of conjugated ionic structures in orthoborate anions can effectively reduce residual water content in the corresponding IL samples.
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- 2016
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156. Identifying the intermolecular hydrogen-bonding supramolecular synthons in an indomethacin-nicotinamide cocrystal by solid-state NMR
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Steven P. Brown, Dinu Iuga, Sitaram P. Velaga, Amjad Alhalaweh, Keisuke Maruyoshi, and Oleg N. Antzutkin
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Niacinamide ,Magnetic Resonance Spectroscopy ,Hydrogen bond ,Chemistry ,Stereochemistry ,Synthon ,Intermolecular force ,Indomethacin ,Metals and Alloys ,Supramolecular chemistry ,Hydrogen Bonding ,General Chemistry ,Cocrystal ,Catalysis ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials ,NMR spectra database ,Crystallography ,Solid-state nuclear magnetic resonance ,Heteronuclear molecule ,Materials Chemistry ,Ceramics and Composites ,Crystallization - Abstract
Two-dimensional (1)H double-quantum and (14)N-(1)H(1)H-(13)C heteronuclear magic-angle spinning (MAS) NMR spectra recorded at natural isotopic abundance identify specific intermolecular COOH···N(arom) and CH(arom)···O=C hydrogen-bonding interactions in the solid-state structure of an indomethacin-nicotinamide cocrystal, thus additionally proving cocrystal formation.
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- 2012
157. Disordering of phospholipid headgroups induced by a small amount of polyethylene oxide
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Andrey, Filippov, Bulat, Munavirov, Bulat, Gizatullin, and Oleg N, Antzutkin
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We present a (31)P NMR spectroscopy study of planar glass-plate-oriented multi-bilayers of dimyristoylphosphatidylcholine (DMPC) with addition of polyethylene oxide (PEO). This work revealed the presence of a new component in the spectra that appeared only with addition of a small fraction of PEO (up to one PEO segment per dimyristoylphosphatidylcholine molecule) and disappeared when larger amounts of PEO were added. We explained this phenomenon as an effect of an inhomogeneous force field induced by the PEO molecules located at a certain depth in the lipid membrane interface region.
- Published
- 2012
158. Suppression of sidebands in magic‐angle‐spinning nuclear magnetic resonance: General principles and analytical solutions
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Malcolm H. Levitt, Oleg N. Antzutkin, Zhiyang Song, and Xiaolong Feng
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Amplitude ,Nuclear magnetic resonance ,Solid-state nuclear magnetic resonance ,Sideband ,Chemistry ,Magic angle spinning ,General Physics and Astronomy ,Physical and Theoretical Chemistry ,Rotation (mathematics) ,Symmetry (physics) ,Spectral line ,Pulse (physics) - Abstract
Several theoretical and experimental aspects of sideband suppression in the nuclear magnetic resonance (NMR) spectra of rotating solids are considered. The principles of sideband suppression are explored using general symmetry arguments and previous treatments are examined critically. Analytical solutions are given for sideband suppression pulse sequences employing four, five, six, and nine π pulses. The analytical solutions for four π pulses are complete. Experimental demonstrations are given.
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- 1994
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159. Natural Abundance (15)N and (13)C CP/MAS NMR of Dialkyldithiocarbamate Compounds with Ni(II) and Zn(II)
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Alexander I, Ivanov and Oleg N, Antzutkin
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Different symmetrically substituted and cyclic dialkydithiocarbamate (R=CH(3), C(2)H(5), C(3)H(7), i-C(3)H(7), C(4)H(9), i-C(4)H(9) and R(2)=(CH(2))(5), (CH(2))(6), (CH(2))(4)O) compounds, such as tetraalkylthiuram disulfides, mononuclear nickel(II), binuclear zinc(II) and heteropolynuclear complexes and their adducts (both non-solvated and solvated forms) with planar and non-planar N-donor organic bases, have been prepared and studied by means of natural abundance (13)C and (15)N CP/MAS NMR spectroscopy. Useful correlations between molecular structures and (13)C and (15)N chemical shifts in these compounds have been established and assignments to carbon and nitrogen sites in resolved molecular structures have been suggested. A combination of the mesomeric effect of dithiocarbamate groups and the (+)inductive effect of alkyl substituents at the nitrogen atoms has been discussed in interpretations of (13)C and (15)N chemical shifts of the studied compounds. A high sensitivity of (15)N chemical shift to the subtle structural differences of both dithiocarbamate groups and N-donor molecules has been revealed. Several remarkable cases of conformational isomerism have been recognized for both dithiocarbamate complexes and their adducts.
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- 2011
160. Spatial structure of heptapeptide Aβ(16-22) (beta-amyloid Aβ(1-40) active fragment) in solution and in complex with a biological membrane model
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Konstantin S, Usachev, Sergej V, Efimov, Ajdar R, Yulmetov, Andrey V, Filippov, Oleg N, Antzutkin, Sergii, Afonin, and Vladimir V, Klochkov
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Models, Molecular ,Amyloid beta-Peptides ,Magnetic Resonance Spectroscopy ,Sodium Dodecyl Sulfate ,Water ,Membranes, Artificial ,Buffers ,Peptide Fragments ,Protein Structure, Secondary ,Solutions ,Boric Acids ,Humans ,Protons ,Micelles - Abstract
The spatial structure of an active fragment of beta-amyloid Aβ(1-40) heptapeptide Aβ(16-22) (Lys-Leu-Val-Phe-Phe-Ala-Glu) in aqueous buffer solution and in complex with sodium dodecyl sulfate micelles as a model membrane system was investigated by (1)H NMR spectroscopy and two-dimensional NMR (TOCSY, HSQC-HECADE (Heteronuclear Couplings from ASSCI-domain experiments with E.COSY-type crosspeaks), NOESY) spectroscopy. Complex formation was confirmed by the chemical shift changes of the heptapeptide's (1)H NMR spectra, as well as by the signs and values of the NOE effects in different environments. We compared the spatial structure of the heptapeptide in borate buffer solution and in complex with a model of the cell surface membrane.
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- 2011
161. Novel halogen-free chelated orthoborate-phosphonium ionic liquids: synthesis and tribophysical properties
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Sergei Glavatskih, Maria Forsyth, Faiz Ullah Shah, Douglas R. MacFarlane, Anthony Somers, and Oleg N. Antzutkin
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Materials science ,General Physics and Astronomy ,Electrolyte ,Viscosity ,chemistry.chemical_compound ,chemistry ,Chemical engineering ,Halogen ,Ionic liquid ,Ionic conductivity ,Phosphonium ,Physical and Theoretical Chemistry ,Lubricant ,Glass transition - Abstract
We report on the synthesis, characterisation, and physical and tribological properties of halogen-free ionic liquids based on various chelated orthoborate anions with different phosphonium cations, both without halogen atoms in their structure. Important physical properties of the ILs including glass transition temperatures, density, viscosity and ionic conductivity were measured and are reported here. All of these new halogen-free orthoborate ionic liquids (hf-BILs) are hydrophobic and hydrolytically stable liquids at room temperature. As lubricants, these hf-BILs exhibit considerably better antiwear and friction reducing properties under boundary lubrication conditions for steel-aluminium contacts as compared with fully formulated (15W-50 grade) engine oil. Being halogen free these hf-BILs offer a more environmentally benign alternative to ILs being currently developed for lubricant applications.
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- 2011
162. Interfacial antiwear and physicochemical properties of alkylborate-dithiophosphates
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Mats Lindberg, Erik Höglund, Faiz Ullah Shah, Sergei Glavatskih, and Oleg N. Antzutkin
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Materials science ,Chemical engineering ,chemistry ,Transition metal ,Organic chemistry ,chemistry.chemical_element ,General Materials Science ,Tribology ,Boron - Abstract
Boron compounds have become of interest in tribology because of their unique tribochemical and tribological properties. At the same time, dialkyldithiophosphates (DTPs) of transition metals have been extensively used as multifunctional additives in lubricants to control friction and reduce wear in mechanical systems. Because of the environmental pollution and health hazards of these compounds, ashless compounds with reduced amounts of sulfur and phosphorus are desirable. This work reports on the synthesis, characterization, and tribological properties of a new class of compounds, alkylborate-dithiophosphates. This class combines two high-iron-affinity surface active groups, borate and dialkyldithiophosphate, into a single molecule. The final products, viscous liquids, were characterized by FT-IR, multinuclear (1)H, (13)C, (31)P, and (11)B NMR spectroscopy and thermal analyses. Residues of one representative compound from this class, DPB-EDTP, after thermal analyses were additionally characterized by multinuclear (13)C, (31)P and (11)B MAS and (31)P CP/MAS NMR spectroscopy. Solid-state NMR data suggest that a dominant part of the solid residue of DPB-EDTP consists of borophosphates. Antiwear and friction properties of a mineral oil with these novel additives were evaluated in a four-ball tribometer in comparison with O,O'-di-n-butyl-dithiophosphato-zinc(II), Zn-BuDTP, as a reference lubricant additive. The surface morphology and the elemental composition of the tribofilms were characterized using scanning electron microscopy with energy-dispersive X-rays spectroscopy (SEM/EDS). The results show that alkylborate-dithiophosphates, with substantially reduced amounts of sulfur and phosphorus compared with Zn-BuDTP, have considerably better antiwear and friction performance.
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- 2011
163. Optically Detected ESR (OD ESR) of ion-radical Pairs in coloured solutions. Observation of transienttrans-azobenzene radical cation
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Mikael Lindgren, Anders Lund, Andrey Koptyug, and Oleg N. Antzutkin
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chemistry.chemical_compound ,Radical ion ,Azobenzene ,Chemistry ,Analytical chemistry ,Quantum yield ,Rubrene ,Spectroscopy ,Photochemistry ,Fluorescence ,Hyperfine structure ,Acceptor ,Atomic and Molecular Physics, and Optics - Abstract
Trans-azobenzene dissolved in different liquid hydrocarbons absorbs fluorescence arising from all acceptors previously used in Fluorescence Detected Magnetic Resonance (FDMR) and Optically Detected ESR (OD ESR) spectroscopy making optical detection impossible. In this report a new acceptor,rubrene, having sufficient quantum yield of fluorescence in the red band 550–620 nm, has been proven successful. OD ESR spectra of the radical-ion pairtrans-azobenzene+/rubrene− were detected in liquid squalane (2,6,10,15,19,23-hexamethyl-tetracosane) solution in the temperature range 294–243 K. The experimental isotropic hyperfine splittings of the radical cation oftrans-azobenzene (a N=1.4 mT) have been compared with those from MNDO/INDO calculations and with those of earlier work using freon matrix studies.
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- 1993
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164. Sideband suppression in magic-angle-spinning NMR by a sequence of 5 π pulses
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Zhiyan Song, Malcolm H. Levitt, Xiaolong Feng, and Oleg N. Antzutkin
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Physics ,Nuclear and High Energy Physics ,Magnetic Resonance Spectroscopy ,Radiation ,Sideband ,Carbon-13 NMR satellite ,General Chemistry ,Pulse (physics) ,Magnetics ,Nuclear magnetic resonance ,Solid-state nuclear magnetic resonance ,Magic angle spinning ,Atomic physics ,Instrumentation ,Sequence (medicine) - Abstract
We report a symmetrical sequence of 5 pi pulses for total sideband suppression in magic-angle-spinning NMR. The sequence is almost evenly spaced and shorter than previous 4 and 6 pi pulse methods.
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- 1993
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165. Molecular motion of the morpholin-1-yl radical in CF2ClCFCl2 as studied by ESR. Use of residual anisotropy of powder spectra to extract dynamics
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Oleg N. Antzutkin, Anders Lund, Nikolas P. Benetis, and Mikael Lindgren
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Chemistry ,Isotropy ,Matrix isolation ,General Physics and Astronomy ,Molecular physics ,Spectral line ,law.invention ,Molecular dynamics ,Nuclear magnetic resonance ,law ,Physics::Atomic Physics ,Physics::Chemical Physics ,Physical and Theoretical Chemistry ,Electron paramagnetic resonance ,Anisotropy ,Spectroscopy ,Hyperfine structure - Abstract
The dynamics of the deprotonated neutral morpholin-1-yl radical, trapped in halocarbon matrix, CF2ClCFCl2, has been studied utilizing electron spin resonance (ESR) spectroscopy. The experimental lineshapes of the radical exhibit an alterating linewidth effect in the temperature range 105–144 K. The major changes of the ESR lineshape were governed by the averaging of the nitrogen hyperfine anisotropy while no exchange of the isotropic hyperfine coupling constants was observed. Geometrical parameters specifying the restricted anisotropic rotation of the whole radical trapped in the matrix could be extracted. Two methods for simulating anisotropic exchange broadened ESR spectra, the secular and non-perturbative, were utilized to investigate the dynamics of the radical. A surprisingly simple “three-site” jump model with a barrier of ≈ 3.6 kcal/mol can be applied in the simulation of the experimental spectra. It has been shown that the secular method cannot reproduce the exchange broadened ESR spectra of systems with large hyperfine anisotropy undergoing large internal reorganisation.
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- 1993
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166. Synthesis, physicochemical, and tribological characterization of S-Di-n-octoxyboron-O,O'-di-n-octyldithiophosphate
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Oleg N. Antzutkin, Faiz Ullah Shah, and Sergei Glavatskih
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Materials science ,Phosphorus ,Metallurgy ,chemistry.chemical_element ,Zinc ,Tribology ,Copper ,Sulfur ,Catalysis ,Chemical engineering ,chemistry ,General Materials Science ,Lubricant ,Thermal analysis - Abstract
Dialkyldithiophosphates (DTPs) of zinc(II), copper(II), and other metals have been extensively used as multifunctional additives in lubricants to control friction and reduce wear in mechanical systems. Among these DTP compounds, zinc dialkyldithiophosphates (ZnDTPs) are the most common additives extensively used for more than 60 years. These additives form a protective film on steel surfaces and, thus, control friction and reduce wear. However, ZnDTPs contain zinc and large amounts of phosphorus and sulfur, which impair the environment, both directly and indirectly, by adversely affecting the performance of catalytic converters of various automobiles. For this reason, environmental legislation imposes limitations on concentrations of phosphorus, sulfur, and zinc in the lubricants. In this work, we report on zinc-free S-di-n-octoxyboron-O,O'-di-n-octyldithiophosphate (DOB-DTP) lubricant additive with amount of phosphorus and sulfur reduced by half in a molecule as compared with ZnDTPs. DOB-DTP was synthesized by a reaction in two steps under inert nitrogen atmosphere. The final product, a viscous liquid, was characterized by the elemental analysis, FT-IR, multinuclear (1)H, (13)C, (31)P, and (11)B NMR spectroscopy and thermal analyses. Tribological performance of a mineral oil with this new additive was evaluated in comparison with O,O'-di-n-butyl-dithiophosphato-zinc(II) (ZnDTP) using a four-ball tribometer. The surface morphology and the elemental composition of the tribofilms were characterized using scanning electron microscopy with energy dispersive X-ray spectroscopy (SEM/EDS). The results show that DOB-DTP has a considerably better antiwear performance and higher stability of the coefficient of friction with time as compared with ZnDTP. Both phosphorus and sulfur were detected by the EDS on the worn steel surfaces at all concentrations of additives in the base oil.
- Published
- 2010
167. Observation of piperidine aggregation and of hydrogen–proton transfer between piperidine radical cations and piperidine molecules in freon matrices. An ESR study at cryogenic temperatures
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Oleg N. Antzutkin, Mikael Lindgren, Anders Lund, and Lars Sjöqvist
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chemistry.chemical_compound ,Freon ,chemistry ,Proton ,Hydrogen ,Matrix isolation ,Molecular Medicine ,Molecule ,Hydrogen transfer ,chemistry.chemical_element ,Piperidine ,Reaction intermediate ,Photochemistry - Abstract
Piperidine forms small aggregates in most Freon matrices at cryogenic temperatures; upon X-irradiation, hydrogen–proton transfer between piperidine radical cations and piperidine molecules occurs.
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- 1992
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168. ChemInform Abstract: Synthesis, Characterization, and Sorption Properties of Amorphous Titanium Phosphate and Silica-Modified Titanium Phosphates
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Oleg N. Antzutkin, Marina V. Maslova, Valeri Naydenov, Lidia G. Gerasimova, and Daniela Rusanova
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Solvation shell ,chemistry ,Ionic strength ,Phase (matter) ,Inorganic chemistry ,chemistry.chemical_element ,Ionic bonding ,Sorption ,General Medicine ,Electrolyte ,Amorphous solid ,Titanium - Abstract
Amorphous titanium hydroxyphosphate with formula Ti(OH)(1.36)(HPO(4))(1.32).2.3H(2)O and a new silica-modified titanium hydroxyphosphate with a general formula Ti(OH)(2x)(HPO(4))(2-x).ySiO(2).nH(2)O are synthesized and characterized using IR, TG, XRD, SEM, solid-state NMR, and BET techniques. It is concluded that SiO(2) is evenly distributed within the titanium phosphate (TiP) agglomerates and that neither the separate silica phase nor the titanium silicates are formed during the synthesis of silica-modified titanium hydroxyphosphate. Correlations between the texture, ion-exchange properties of the amorphous titanium hydroxyphosphate, and the amount of SiO(2) present within the TiP matrix are established. Sorption properties of silica-modified titanium hydroxyphosphate toward Cs(+) and Sr(2+) are studied in a series of samples with an increasing amount of silica, at different pH, and in NaCl solutions with a varying ionic strength. It is found that sorption of Cs(+) does not depend practically on the amount of SiO(2) present, whereas the Sr(2+) uptake drastically decreases with an increase of silica amount. The effects of pH and of the electrolyte concentration on the sorption behavior of titanium phosphate are discussed in terms of ionic hydration shell and titanium phosphate structural specificity. The kinetics of sorption processes is also investigated, and the diffusion coefficients for cesium and strontium are obtained.
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- 2009
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169. Synthesis, characterization, and sorption properties of amorphous titanium phosphate and silica-modified titanium phosphates
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Lidia G. Gerasimova, Oleg N. Antzutkin, Valeri Naydenov, Marina V. Maslova, and Daniela Rusanova
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Inorganic Chemistry ,Solvation shell ,chemistry ,Ionic strength ,Phase (matter) ,chemistry.chemical_element ,Ionic bonding ,Sorption ,Electrolyte ,Physical and Theoretical Chemistry ,Titanium ,Amorphous solid ,Nuclear chemistry - Abstract
Amorphous titanium hydroxyphosphate with formula Ti(OH)(1.36)(HPO(4))(1.32).2.3H(2)O and a new silica-modified titanium hydroxyphosphate with a general formula Ti(OH)(2x)(HPO(4))(2-x).ySiO(2).nH(2)O are synthesized and characterized using IR, TG, XRD, SEM, solid-state NMR, and BET techniques. It is concluded that SiO(2) is evenly distributed within the titanium phosphate (TiP) agglomerates and that neither the separate silica phase nor the titanium silicates are formed during the synthesis of silica-modified titanium hydroxyphosphate. Correlations between the texture, ion-exchange properties of the amorphous titanium hydroxyphosphate, and the amount of SiO(2) present within the TiP matrix are established. Sorption properties of silica-modified titanium hydroxyphosphate toward Cs(+) and Sr(2+) are studied in a series of samples with an increasing amount of silica, at different pH, and in NaCl solutions with a varying ionic strength. It is found that sorption of Cs(+) does not depend practically on the amount of SiO(2) present, whereas the Sr(2+) uptake drastically decreases with an increase of silica amount. The effects of pH and of the electrolyte concentration on the sorption behavior of titanium phosphate are discussed in terms of ionic hydration shell and titanium phosphate structural specificity. The kinetics of sorption processes is also investigated, and the diffusion coefficients for cesium and strontium are obtained.
- Published
- 2008
170. Molecular Structure Determination: Applications in Biology
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Oleg N. Antzutkin
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Stereochemistry ,Substitution (logic) ,Molecule ,Biology - Published
- 2007
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171. Polymorphism of Alzheimer’s Aβ Amyloid Fibrils
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Oleg N. Antzutkin
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chemistry.chemical_classification ,P3 peptide ,Neurotoxicity ,Peptide ,macromolecular substances ,Fibril ,medicine.disease ,Biochemistry of Alzheimer's disease ,chemistry ,Polymorphism (materials science) ,mental disorders ,Biophysics ,medicine ,Aβ amyloid ,Cerebral amyloid angiopathy - Abstract
An overview of the strategy and experimental solid-state NMR, STEM, and AFM methods useful for obtaining structural constraints on Alzheimer’s amyloid-β peptide fibrils is presented. Polymorphism of amyloid fibrils and the relevance to neurotoxicity is discussed.
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- 2007
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172. Copper(I) O,O '-dialkyldithiophosphate clusters: EXAFS, NMR and X-ray diffraction studies
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Xiaodong Zou, Daniela Rusanova, Kirsten E. Christensen, Willis Forsling, Kevin J. Pike, Oleg N. Antzutkin, Ray Dupree, and Ingmar Persson
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chemistry.chemical_classification ,Extended X-ray absorption fine structure ,Icosahedral symmetry ,chemistry.chemical_element ,Crystal structure ,Copper ,Crystallography ,chemistry ,X-ray crystallography ,Materials Chemistry ,Cluster (physics) ,Crystallite ,Physical and Theoretical Chemistry ,Alkyl - Abstract
Copper K- edge EXAFS data for six polycrystalline cubic cluster compounds, {Cu-8[ S2P(OR)(2)](6)(mu(8)- S)} with R= Et, Pr-n, Pr-i, Bu-n, Bu-i and Am-i, show that the architecture of their Cu-8(S2P)(2)S cores is fairly rigid and independent of both length and branching of the alkyl chain, and that the structure of the cluster is maintained in acetone solution. Solid- state P-31 CP-MAS and static Cu-65 NMR data for {Cu-8[S2P(O-n Pr)(2)] 6(mu(8)- S)} and {Cu-8[S2P(OEt)(2)](6) mu(8)- S)} show similarities in the icosahedral O,O'- dialkyldithiophosphate shells and in the `cubic' copper cores in these cluster compounds. The crystal structure of {Cu-8[S2P(O-n Pr)(2)](6) (mu(8)- S)} was resolved using single- crystal X- ray diffraction.
- Published
- 2007
173. A spectroscopic study of calcium surface sites and adsorbed iron species at aqueous fluorapatite by means of 1H and 31P MAS NMR
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Willis Forsling, Oleg N. Antzutkin, Dan E. Sandström, and Mathias Jarlbring
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inorganic chemicals ,Aqueous solution ,Chemistry ,fungi ,Fluorapatite ,Inorganic chemistry ,Maghemite ,chemistry.chemical_element ,Surfaces and Interfaces ,engineering.material ,Calcium ,Condensed Matter Physics ,Resonance (chemistry) ,Ion ,Adsorption ,Transition metal ,Electrochemistry ,engineering ,General Materials Science ,Spectroscopy - Abstract
Assignments of the protolytic speciation at the calcium hydroxyl surface sites of synthetic fluorapatite and the chemical interactions between fluorapatite-maghemite and fluorapatite-Fe2+ ions have been studied by means of 1H and 31P single-pulse and 31P CP MAS NMR. Three possible forms of calcium hydroxyl surface sites have been suggested and assigned to [triple bond] CaOH, [triple bond]Ca(OH)2-, and [triple bond]CaOH2+, and their mutual ratios were found to vary as a function of pH. Due to their paramagnetic properties, iron species and Fe2+ ions adsorbed at the fluorapatite surface display a broad spinning sideband manifold in the single-pulse 31P MAS NMR spectra. The resonance lines in the 31P CP MAS NMR spectra originating from the bulk phosphate groups PO4(3-) and phosphorus surface sites [triple bond]POx and [triple bond]POxH decrease with increasing Fe2+ ion adsorption. When iron species originating from maghemite are adsorbed at the fluorapatite surface, no 31P NMR signal is detected, which supports the hypothesis that surface reactions occur between the phosphorus surface sites of fluorapatite and iron species.
- Published
- 2006
174. Natural Abundance15N and13C CP/MAS NMR of Dialkyldithiocarbamate Compounds with Ni(II) and Zn(II)
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Alexander V. Ivanov and Oleg N. Antzutkin
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Abundance (ecology) ,Chemistry ,General Medicine ,Nuclear chemistry - Published
- 2005
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175. Formation of {Cu6[S2P(OC2H5)2]6} on Cu2S surfaces from aqueous solutions of the KS2P(OC2H5)2 collector: scanning electron microscopy and solid-state 31P cross-polarization/magic angle spinning and static 65Cu NMR studies
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Daniela, Rusanova, Willis, Forsling, Oleg N, Antzutkin, Kevin J, Pike, and Ray, Dupree
- Abstract
The interactions of synthetic chalcocite surfaces with diethyldithiophosphate, potassium salt, K[S2P(OC2H5)2], were studied by means of 31P cross-polarization/magic angle spinning (CP/MAS) NMR spectroscopy and scanning electron microscopy (SEM). To identify the species formed on the Cu2S surfaces, a polycrystalline {CuI6[S2P(OC2H5)2]6} cluster was synthesized and analyzed by SEM, powder X-ray diffraction techniques and solid-state 31P CP/MAS NMR and static 65Cu NMR spectroscopy. 31P chemical shift anisotropy (CSA) parameters, delta(cs) and eta(cs), were estimated and used for assigning the bridging type of diethyldithiophosphate ligands in the {CuI6[S2P(OC2H5)2]6} cluster. The latter data were compared to 31P CSA parameters estimated from the spinning sideband patterns in 31P NMR spectra of the collector-treated mineral surfaces: formation of polycrystalline {CuI6[S2P(OC2H5)2]6} on the Cu2S surfaces is suggested. The second-order quadrupolar line shape of 65Cu was simulated, and the NMR interaction parameters, CQ and etaQ, for the copper(I) diethyldithiophosphate cluster were obtained.
- Published
- 2005
176. Solid state 31P and 207Pb MAS NMR studies on polycrystalline O,O'-dialkyldithiophosphate lead(II) complexes
- Author
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Alexander V. Ivanov, Oleg N. Antzutkin, Kevin J. Pike, Anna-Carin Larsson, and Willis Forsling
- Subjects
Nuclear and High Energy Physics ,Sideband ,Chemistry ,Biophysics ,Analytical chemistry ,Solid-state ,Condensed Matter Physics ,Biochemistry ,Linear relationship ,Molecular geometry ,Physical chemistry ,Crystallite ,Tensor ,Anisotropy - Abstract
A number of lead(II) O,O'-dialkyldithiophosphate complexes were studied by (13)C, (31)P, and (207)Pb MAS NMR. Simulations of (31)P chemical shift anisotropy using spinning sideband analysis reveal a linear relationship between the SPS bond angle and the principal values delta(22) and delta(33) of the (31)P chemical shift tensor. The (31)P CSA data were used to assign ligands with different structural functions. In the cases of diethyldithiophosphate and di-iso-butyldithiophosphate lead(II) complexes, (2)J((31)P, (207)Pb)-couplings were resolved and used to confirm the suggested assignment of the ligands. The SIMPSON computer program was used to calculate (31)P and (207)Pb spectral sideband patterns.
- Published
- 2005
177. New Techniques in Solid-State NMR
- Author
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Jacek Klinowski and Oleg N. Antzutkin
- Subjects
New horizons ,Solid-state nuclear magnetic resonance ,Proton ,Chemistry ,Analytical chemistry ,Vinogradov ,Physical chemistry ,Nuclear magnetic resonance spectroscopy ,Spectroscopy - Abstract
J. W. Hennel, J. Klinowski: Magic-Angle Spinning: a Historical Perspective.- A. Samoson, T.Tuherm, J. Past, A. Reinhold, T. Anupold, I. Heinmaa: New Horizons for Magic-Angle Spinning NMR.- E. Vinogradov, P.K. Madhu, S. Vega: Strategies for High-Resolution Proton Spectroscopy in the Solid-State NMR.- M.J. Potrzebowski, S. Kazmierski: High-Resolution Solid-State NMR Studies of Inclusion Complexes.- J. Rocha, C.M. Morais, C. Fernandez: Progress in Multiple-Quantum Magic-Angle Spinning NMR Spectroscopy.- H. Eckert, S. Elbers, J.D. Epping, M. Janssen, M. Kalwei, W. Strojek, U. Voigt: Dipolar Solid State NMR Approaches Towards Medium-Range Structure in Oxide Glasses.- W. Kolodziejski: Solid-State NMR Studies of Bone.- A.V. Ivanov, O.N. Antzutkin: Natural Abundance 15N and 13C CP/MAS NMR on Dialkyldithiocarbamate Compounds with Ni(II) and Zn(II)
- Published
- 2005
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178. Natural Abundance 15N and 13C CP/MAS NMR of Dialkyldithiocarbamate Compounds with Ni(II) and Zn(II)
- Author
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Alexander Ivanov and Oleg N. Antzutkin
- Subjects
chemistry.chemical_classification ,chemistry.chemical_compound ,chemistry ,Organic base ,Stereochemistry ,Chemical shift ,Molecule ,Mesomeric effect ,Dithiocarbamate ,Medicinal chemistry ,Conformational isomerism ,Inductive effect ,Alkyl - Abstract
Different symmetrically substituted and cyclic dialkydithiocarbamate (R=CH3, C2H5, C3H7, i-C3H7, C4H9, i-C4H9 and R2=(CH2)5, (CH2)6, (CH2)4O) compounds, such as tetraalkylthiuram disulfides, mononuclear nickel(II), binuclear zinc(II) and heteropolynuclear complexes and their adducts (both non-solvated and solvated forms) with planar and non-planar N-donor organic bases, have been prepared and studied by means of natural abundance 13C and 15N CP/MAS NMR spectroscopy. Useful correlations between molecular structures and 13C and 15N chemical shifts in these compounds have been established and assignments to carbon and nitrogen sites in resolved molecular structures have been suggested. A combination of the mesomeric effect of dithiocarbamate groups and the (+)inductive effect of alkyl substituents at the nitrogen atoms has been discussed in interpretations of 13C and 15N chemical shifts of the studied compounds. A high sensitivity of 15N chemical shift to the subtle structural differences of both dithiocarbamate groups and N-donor molecules has been revealed. Several remarkable cases of conformational isomerism have been recognized for both dithiocarbamate complexes and their adducts.
- Published
- 2004
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179. Phase Transition, Ordering and Lateral Diffusion in Phospholipid Bilayers in the Presence of Poly(Ethylene Oxide)
- Author
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Andrey Filippov, Bulat Munavirov, and Oleg N. Antzutkin
- Subjects
Phase transition ,Ethylene oxide ,Chemistry ,Bilayer ,Vesicle ,technology, industry, and agriculture ,Analytical chemistry ,Phospholipid ,Oxide ,macromolecular substances ,General Chemistry ,chemistry.chemical_compound ,Crystallography ,Lateral diffusion ,Molecule ,lipids (amino acids, peptides, and proteins) - Abstract
The thermal behaviour, molecular orientation and lateral diffusion in the bilayered systems of dimyristoylphosphatidylcholine (DMPC) in the presence of poly(ethylene oxide) (PEO) were studied by NMR and DSC techniques, and it was found that PEO decreases the melting temperature (of vesicles and flat multibilayers) and affects the degree of orientation of DMPC molecules relative to the bilayer normal, but it does not influence the lateral diffusion of DMPC molecules.
- Published
- 2012
- Full Text
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180. Supramolecular structural constraints on Alzheimer's beta-amyloid fibrils from electron microscopy and solid-state nuclear magnetic resonance
- Author
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Robert Tycko, John J. Balbach, Oleg N. Antzutkin, and Richard D. Leapman
- Subjects
Amyloid ,Molecular Sequence Data ,Supramolecular chemistry ,macromolecular substances ,Fibril ,Microscopy, Atomic Force ,Biochemistry ,Protein Structure, Secondary ,law.invention ,Structure-Activity Relationship ,Protein structure ,law ,Alzheimer Disease ,mental disorders ,Scanning transmission electron microscopy ,Humans ,Amino Acid Sequence ,Nuclear Magnetic Resonance, Biomolecular ,Carbon Isotopes ,Amyloid beta-Peptides ,Chemistry ,Carbon-13 NMR ,Peptide Fragments ,Crystallography ,Solid-state nuclear magnetic resonance ,Microscopy, Electron, Scanning ,Quantum Theory ,Electron microscope - Abstract
We describe electron microscopy (EM), scanning transmission electron microscopy (STEM), and solid-state nuclear magnetic resonance (NMR) measurements on amyloid fibrils formed by the 42-residue beta-amyloid peptide associated with Alzheimer's disease (Abeta(1)(-)(42)) and by residues 10-35 of the full-length peptide (Abeta(10)(-)(35)). These measurements place constraints on the supramolecular structure of the amyloid fibrils, especially the type of beta-sheets present in the characteristic amyloid cross-beta structural motif and the assembly of these beta-sheets into a fibril. EM images of negatively stained Abeta(10)(-)(35) fibrils and measurements of fibril mass per length (MPL) by STEM show a strong dependence of fibril morphology and MPL on pH. Abeta(10)(-)(35) fibrils formed at pH 3.7 are single "protofilaments" with MPL equal to twice the value expected for a single cross-beta layer. Abeta(10)(-)(35) fibrils formed at pH 7.4 are apparently pairs of protofilaments or higher order bundles. EM and STEM data for Abeta(1)(-)(42) fibrils indicate that protofilaments with MPL equal to twice the value expected for a single cross-beta layer are also formed by Abeta(1)(-)(42) and that these protofilaments exist singly and in pairs at pH 7.4. Solid-state NMR measurements of intermolecular distances in Abeta(10)(-)(35) fibrils, using multiple-quantum (13)C NMR, (13)C-(13)C dipolar recoupling, and (15)N-(13)C dipolar recoupling techniques, support the in-register parallel beta-sheet organization previously established by Lynn, Meredith, Botto, and co-workers [Benzinger et al. (1998) Proc. Natl. Acad. Sci. U.S.A. 95, 13407-13412; Benzinger et al. (2000) Biochemistry 39, 3491-3499] and show that this beta-sheet organization is present at pH 3.7 as well as pH 7.4 despite the differences in fibril morphology and MPL. Solid-state NMR measurements of intermolecular distances in Abeta(1)(-)(42) fibrils, which represent the first NMR data on Abeta(1)(-)(42) fibrils, also indicate an in-register parallel beta-sheet organization. These results, along with previously reported data on Abeta(1)(-)(40) fibrils, suggest that the supramolecular structures of Abeta(10)(-)(35), Abeta(1)(-)(40), and Abeta(1)(-)(42) fibrils are quite similar. A schematic structural model of these fibrils, consistent with known experimental EM, STEM, and solid-state NMR data, is presented.
- Published
- 2002
181. A structural model for Alzheimer's beta -amyloid fibrils based on experimental constraints from solid state NMR
- Author
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Frank Delaglio, Oleg N. Antzutkin, Robert Tycko, John J. Balbach, Aneta T. Petkova, Yoshitaka Ishii, and Richard D. Leapman
- Subjects
Models, Molecular ,Multidisciplinary ,Amyloid beta-Peptides ,Chemistry ,Hydrogen bond ,Intermolecular force ,Molecular Sequence Data ,Fibril ,Peptide Fragments ,Protein Structure, Secondary ,Crystallography ,Protein structure ,Solid-state nuclear magnetic resonance ,Commentary ,Humans ,Amino Acid Sequence ,Structural motif ,Fiber diffraction ,Peptide sequence ,Nuclear Magnetic Resonance, Biomolecular - Abstract
We present a structural model for amyloid fibrils formed by the 40-residue β-amyloid peptide associated with Alzheimer's disease (Aβ 1–40 ), based on a set of experimental constraints from solid state NMR spectroscopy. The model additionally incorporates the cross-β structural motif established by x-ray fiber diffraction and satisfies constraints on Aβ 1–40 fibril dimensions and mass-per-length determined from electron microscopy. Approximately the first 10 residues of Aβ 1–40 are structurally disordered in the fibrils. Residues 12–24 and 30–40 adopt β-strand conformations and form parallel β-sheets through intermolecular hydrogen bonding. Residues 25–29 contain a bend of the peptide backbone that brings the two β-sheets in contact through sidechain-sidechain interactions. A single cross-β unit is then a double-layered β-sheet structure with a hydrophobic core and one hydrophobic face. The only charged sidechains in the core are those of D23 and K28, which form salt bridges. Fibrils with minimum mass-per-length and diameter consist of two cross-β units with their hydrophobic faces juxtaposed.
- Published
- 2002
182. Supramolecular structure in full-length Alzheimer's beta-amyloid fibrils: evidence for a parallel beta-sheet organization from solid-state nuclear magnetic resonance
- Author
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John J. Balbach, Aneta T. Petkova, Oleg N. Antzutkin, Nathan A. Oyler, David Gordon, Stephen C. Meredith, and Robert Tycko
- Subjects
Fysikalisk kemi ,chemistry.chemical_classification ,Peptide Biosynthesis ,Amyloid beta-Peptides ,Magnetic Resonance Spectroscopy ,Chemistry ,Protein Conformation ,Intermolecular force ,Biophysics ,Supramolecular chemistry ,Beta sheet ,Peptide ,Nuclear magnetic resonance spectroscopy ,Physical Chemistry ,Carbon ,Protein Structure, Secondary ,Protein Structure, Tertiary ,NMR spectra database ,Crystallography ,Protein structure ,Solid-state nuclear magnetic resonance ,Alzheimer Disease ,Humans ,Peptides ,Research Article - Abstract
We report constraints on the supramolecular structure of amyloid fibrils formed by the 40-residue β-amyloid peptide associated with Alzheimer's disease (Aβ1–40) obtained from solid-state nuclear magnetic resonance (NMR) measurements of intermolecular dipole-dipole couplings between 13C labels at 11 carbon sites in residues 2 through 39. The measurements are carried out under magic-angle spinning conditions, using the constant-time finite-pulse radiofrequency-driven recoupling (fpRFDR-CT) technique. We also present one-dimensional 13C magic-angle spinning NMR spectra of the labeled Aβ1–40 samples. The fpRFDR-CT data reveal nearest-neighbor intermolecular distances of 4.8 ± 0.5 Å for carbon sites from residues 12 through 39, indicating a parallel alignment of neighboring peptide chains in the predominantly β-sheet structure of the amyloid fibrils. The one-dimensional NMR spectra indicate structural order at these sites. The fpRFDR-CT data and NMR spectra also indicate structural disorder in the N-terminal segment of Aβ1–40, including the first nine residues. These results place strong constraints on any molecular-level structural model for full-length β-amyloid fibrils. Validerad; 2002; 20070417 (bajo)
- Published
- 2002
183. Amyloid fibril formation by A beta 16-22, a seven-residue fragment of the Alzheimer's beta-amyloid peptide, and structural characterization by solid state NMR
- Author
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Jennifer L. Reed, Richard D. Leapman, Nancy W. Rizzo, John J. Balbach, Robert Tycko, Yoshitaka Ishii, Fred Dyda, and Oleg N. Antzutkin
- Subjects
Models, Molecular ,Protein Conformation ,Peptide ,macromolecular substances ,Biochemistry ,Protein Structure, Secondary ,Protein structure ,X-Ray Diffraction ,Side chain ,Humans ,Peptide sequence ,Nuclear Magnetic Resonance, Biomolecular ,chemistry.chemical_classification ,Carbon Isotopes ,Amyloid beta-Peptides ,Birefringence ,Nitrogen Isotopes ,Chemistry ,Carbon-13 NMR ,Peptide Fragments ,Peptide Conformation ,Crystallography ,Solid-state nuclear magnetic resonance ,Models, Chemical ,Two-dimensional nuclear magnetic resonance spectroscopy ,Oligopeptides - Abstract
The seven-residue peptide N-acetyl-Lys-Leu-Val-Phe-Phe-Ala-Glu-NH(2), called A beta(16-22) and representing residues 16-22 of the full-length beta-amyloid peptide associated with Alzheimer's disease, is shown by electron microscopy to form highly ordered fibrils upon incubation of aqueous solutions. X-ray powder diffraction and optical birefringence measurements confirm that these are amyloid fibrils. The peptide conformation and supramolecular organization in A beta(16-22) fibrils are investigated by solid state (13)C NMR measurements. Two-dimensional magic-angle spinning (2D MAS) exchange and constant-time double-quantum-filtered dipolar recoupling (CTDQFD) measurements indicate a beta-strand conformation of the peptide backbone at the central phenylalanine. One-dimensional and two-dimensional spectra of selectively and uniformly labeled samples exhibit (13)C NMR line widths of
- Published
- 2000
184. Multiple quantum solid-state NMR indicates a parallel, not antiparallel, organization of β-sheets in Alzheimer's β-amyloid fibrils
- Author
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Nancy W. Rizzo, Oleg N. Antzutkin, John J. Balbach, Robert Tycko, Jennifer L. Reed, and Richard D. Leapman
- Subjects
Multidisciplinary ,Alanine ,Amyloid beta-Peptides ,Chemistry ,Molecular Sequence Data ,Supramolecular chemistry ,macromolecular substances ,Carbon-13 NMR ,Biological Sciences ,Fibril ,Antiparallel (biochemistry) ,Peptide Fragments ,Protein Structure, Secondary ,Crystallography ,Protein structure ,Structural biology ,Solid-state nuclear magnetic resonance ,Humans ,Quantum Theory ,Senile plaques ,Amino Acid Sequence ,Dimerization ,Nuclear Magnetic Resonance, Biomolecular - Abstract
Senile plaques associated with Alzheimer's disease contain deposits of fibrils formed by 39- to 43-residue β-amyloid peptides with possible neurotoxic effects. X-ray diffraction measurements on oriented fibril bundles have indicated an extended β-sheet structure for Alzheimer's β-amyloid fibrils and other amyloid fibrils, but the supramolecular organization of the β-sheets and other structural details are not well established because of the intrinsically noncrystalline, insoluble nature of amyloid fibrils. Here we report solid-state NMR measurements, using a multiple quantum (MQ) 13 C NMR technique, that probe the β-sheet organization in fibrils formed by the full-length, 40-residue β-amyloid peptide (Aβ 1–40 ). Although an antiparallel β-sheet organization often is assumed and is invoked in recent structural models for full-length β-amyloid fibrils, the MQNMR data indicate an in-register, parallel organization. This work provides site-specific, atomic-level structural constraints on full-length β-amyloid fibrils and applies MQNMR to a significant problem in structural biology.
- Published
- 2000
185. 13C and 15N-chemical shift anisotropy of ampicillin and penicillin-V studied by 2D-PASS and CP/MAS NMR
- Author
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Y.K. Lee, Malcolm H. Levitt, and Oleg N. Antzutkin
- Subjects
Nuclear and High Energy Physics ,Magnetic Resonance Spectroscopy ,Chemistry ,Stereochemistry ,Biophysics ,Condensed Matter Physics ,Biochemistry ,Penicillin ,Models, Structural ,Crystallography ,Ampicillin ,medicine ,Anisotropy ,Penicillin V ,medicine.drug - Abstract
The principal values of the chemical shift tensors of all 13 C and 15 N sites in two antibiotics, ampicillin and penicillin-V, were determined by 2-dimensional p hase a djusted s pinning s ideband (2D-PASS) and conventional CP/MAS experiments. The 13 C and 15 N chemical shift anisotropies (CSA), and their confidence limits, were evaluated using a Mathematica program. The CSA values suggest a revised assignment of the 2-methyl 13 C sites in the case of ampicillin. We speculate on a relationship between the chemical shift principal values of many of the 13 C and 15 N sites and the β-lactam ring conformation.
- Published
- 1998
186. Conformational transitions of the phosphodiester backbone in native DNA: two-dimensional magic-angle-spinning 31P-NMR of DNA fibers
- Author
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Allan Rupprecht, Y.K. Lee, Malcolm H. Levitt, S.C. Shekar, Oleg N. Antzutkin, and Zhiyan Song
- Subjects
Fysikalisk kemi ,Magnetic Resonance Spectroscopy ,Sodium ,Biophysics ,Netropsin ,Phosphorus ,DNA ,Nuclear magnetic resonance spectroscopy ,Lithium ,Crystallography, X-Ray ,Phosphate ,Physical Chemistry ,Orientation (vector space) ,Crystallography ,chemistry.chemical_compound ,chemistry ,Phosphodiester bond ,Magic angle spinning ,Nucleic Acid Conformation ,Magnesium ,Twist ,Research Article - Abstract
Solid-state 31P-NMR is used to investigate the orientation of the phosphodiester backbone in NaDNA-, LiDNA-, MgDNA-, and NaDNA-netropsin fibers. The results for A- and B-DNA agree with previous interpretations. We verify that the binding of netropsin to NaDNA stabilizes the B form, and find that in NaDNA, most of the phosphate groups adopt a conformation typical of the A form, although there are minor components with phosphate orientations close to the B form. For LiDNA and MgDNA samples, on the other hand, we find phosphate conformations that are in variance with previous models. These samples display x-ray diffraction patterns that correspond to C-DNA. However, we find two distinct phosphate orientations in these samples, one resembling that in B-DNA, and one displaying a twist of the PO4 groups about the O3-P-O4 bisectors. The latter conformation is not in accordance with previous models of C-DNA structure. Upprättat; 1997; 20070417 (bajo)
- Published
- 1997
187. Exploiting the synergy of powder X-ray diffraction and solid-state NMR spectroscopy in a powerful strategy for structure determination of organic materials
- Author
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Steven P. Brown, Kenneth D. M. Harris, Colan E. Hughes, Oleg N. Antzutkin, Dmytro Dudenko, P. Andrew Williams, and Sitaram P. Velaga
- Subjects
Crystallography ,Materials science ,Solid-state nuclear magnetic resonance ,Structural Biology ,X-ray crystallography ,Spectroscopy - Published
- 2013
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188. Halogen-free chelated orthoborate ionic liquids and organic ionic plastic crystals
- Author
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Pamela Mary Dean, Oleg N. Antzutkin, Douglas R. MacFarlane, Faiz Ullah Shah, Sergei Glavatskih, and Maria Forsyth
- Subjects
chemistry.chemical_classification ,Hydrogen bond ,Metal ions in aqueous solution ,Inorganic chemistry ,Salt (chemistry) ,Ionic bonding ,Aromaticity ,General Chemistry ,Nuclear magnetic resonance spectroscopy ,Crystallography ,chemistry.chemical_compound ,chemistry ,Ionic liquid ,Materials Chemistry ,Plastic crystal - Abstract
Five halogen-free orthoborate salts comprised of three different cations (cholinium, pyrrolidinium and imidazolium) and two orthoborate anions, bis(mandelato)borate and bis(salicylato)borate, were synthesised and characterised by DSC, X-ray diffraction and NMR. DSC measurements revealed that glass transition points of these orthoborate salts are in the temperature range from −18 to −2 °C. In addition, it was found that [EMPy][BScB] and [EMIm][BScB] salts have solid–solid phase transitions below their melting points, i.e. they exhibit typical features of plastic crystals. Salts of the bis(salicylato)borate anion [BScB]− have higher melting points compared with corresponding salts of the bis(mandelato)borate anion [BMB]−. Single crystal X-ray diffraction crystallography (for [Chol][BScB] crystals) and solid-state multinuclear (13C, 11B and 15N) NMR spectroscopy were employed for the structural characterisation of [Chol][BScB], [EMPy][BScB] and [EMIm][BScB], which are solids at room temperature: a strong interaction between [BScB]− anions and [Chol]+ cations was identified as (i) hydrogen bonding between OH of [Chol]+ and carbonyl groups of [BScB]− and (ii) as the inductive C–H⋯π interaction. In the other salt, [EMIm][BScB], anions exhibit π⋯π stacking in combination with C–H⋯π interactions with [EMIm]+ cations. These interactions were not identified in [EMPy][BScB] probably because of the lack of aromaticity in cations of the latter system. Our data on the formation of a lanthanum complex with bis(salicylato)borate in the liquid mixture of La3+(aq) with [Chol][BScB] suggest that this class of novel ILs can be potentially used in the extraction processes of metal ions of rare earth elements.
- Published
- 2012
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189. Colloidal Defect-Free Silicalite-1 Single Crystals:Preparation, Structure Characterization, Adsorption, and SeparationProperties for Alcohol/Water Mixtures.
- Author
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Han Zhou, Johanne Mouzon, Amirfarrokh Farzaneh, Oleg N. Antzutkin, Mattias Grahn, and Jonas Hedlund
- Published
- 2015
- Full Text
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190. Direct Determination of a Peptide Torsional Angle ψ by Double-Quantum Solid-State NMR
- Author
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Oleg N. Antzutkin, Andreas Brinkmann, A. Gräslund, X. Feng, H. Luthman, L. Eriksson, M.H. Levitt, and Mattias Edén
- Subjects
chemistry.chemical_classification ,Chemistry ,Carbon-13 NMR satellite ,Nuclear magnetic resonance spectroscopy of nucleic acids ,Peptide ,General Chemistry ,Nuclear magnetic resonance spectroscopy ,Fluorine-19 NMR ,Biochemistry ,Catalysis ,Colloid and Surface Chemistry ,Nuclear magnetic resonance ,Solid-state nuclear magnetic resonance ,Double quantum ,Torsional angle - Published
- 1997
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191. Effect of Curcumin on Lateral Diffusion of Phosphatidylcholinesin Saturated and Unsaturated Bilayers.
- Author
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Andrei V. Filippov, Sergey A. Kotenkov, Bulat Munavirov, and Oleg N. Antzutkin
- Published
- 2014
- Full Text
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192. Micellesand Aggregates of Oxyethylated Isononylphenolsand Their Extraction Properties near Cloud Point.
- Author
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VictorP. Arkhipov, Zhamil Sh. Idiyatullin, Elisaveta F. Potapova, Oleg N. Antzutkin, and Andrey V. Filippov
- Published
- 2014
- Full Text
- View/download PDF
193. 31P Solid-State Nuclear Magnetic Resonance Study of the Sorption of Phosphate onto Gibbsite and Kaolinite.
- Author
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Tristan J. Van Emmerik, Dan E. Sandström, Oleg N. Antzutkin, Michael J. Angove, and Bruce B. Johnson
- Published
- 2007
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194. Solid-State NMR and EXAFS Spectroscopic Characterization of Polycrystalline Copper(I) O,O′-Dialkyldithiophosphate Cluster Compounds: Formation of Copper(I) O,O′-Diisobutyldithiophosphate Compounds on the Surface of Synthetic Chalcocite.
- Author
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Daniela Rusanova, Kevin J. Pike, Ingmar Persson, John V. Hanna, Ray Dupree, Willis Forsling, and Oleg N. Antzutkin
- Published
- 2006
- Full Text
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195. The [2H8]THF radical cation in CF3CCl3 and CFCl3. An EPR and ENDOR study
- Author
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Nikolas P. Benetis, Mikael Lindgren, Oleg N. Antzutkin, and Roland Erickson
- Subjects
Chemistry ,Landé g-factor ,Radical ,Analytical chemistry ,Protonation ,law.invention ,Crystallography ,chemistry.chemical_compound ,Radical ion ,law ,Electron paramagnetic resonance ,Spectroscopy ,Hyperfine structure ,Tetrahydrofuran - Abstract
The structure and dynamics of the radical cation of deuteriated tetrahydrofuran ([2H8]THF) stabilized in the freon matrices CFCl3 and CF3CCl3 have been investigated by means of EPR and ENDOR spectroscopy. The EPR and ENDOR results of the rigid structure give two pairs of strongly interacting β-deuterium hf splittings [aD= 1.36 (2 D) and aD= 0.60 mT (2 D)] consistent with the protonated analogue [Kubodera et al., J. Phys. Chem., 1981, 85, 2583 (ref. 1)]. An additional hf splitting (0.9–1.1 mT) assigned to the matrix fluorine was resolved above ca. 110 K in CFCl3. The temperature dependent EPR lineshapes (77–145 K) involving the exchange between four coupled (I= 1) nuclei have been analysed. A two-site model explained qualitatively the alterating line-widths at intermediate temperatures and resulted in an activation energy of ca. 1.7 kcal mol–1 A non-perturbative approach adopting a four-site model to account for puckering motion was tested. The dynamics were also manifested as a reversible temperature effect for the ENDOR. The relative abundance of resonances due to an averaged (hf) structure become predominant as the temperature is increased.
- Published
- 1993
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196. An EPR and theoretical investigation of azoalkane and azobenzene radical cations
- Author
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Hikmet Agirbas, Christopher J. Rhodes, Mikael Lindgren, and Oleg N. Antzutkin
- Subjects
Chemistry ,Stereochemistry ,Landé g-factor ,Radical ,Matrix isolation ,Electronic structure ,Photochemistry ,law.invention ,chemistry.chemical_compound ,Radical ion ,Azobenzene ,law ,Molecule ,Electron paramagnetic resonance - Abstract
Results for azoethane, 1,1′-azopropane, 2,2′-azopropane, 1,1′-azoadamantane, 2,3-diazabicyclo-[2.2.2]oct-2-ene (DBO), 1,4-dimethyl-2,3-diazabicyclo[2.2.2]oct-2-ene (Me2DBO) and cis and trans-azobenzene radical cations are presented, as formed in solid freon matrices at low temperatures. The azoalkane radical cations are all formed in σ-states, corresponding to ionisation of the ag orbital (out-of-phase lone-pair combination), while for the trans-azobenzene radical cation the assignment to the π-state cannot be definitely excluded, although experimental evidence would appear to suggest the σ-state: the cis-azobenzene radical cation isomerises to the trans-isomer. Semi-empirical calculations were also performed on selected examples of the above species, the conclusions from which are discussed.
- Published
- 1993
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- View/download PDF
197. Site-Specific Identification of Non-β-Strand Conformations in Alzheimer's β-Amyloid Fibrils by Solid-State NMR
- Author
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Oleg N. Antzutkin, John J. Balbach, and Robert Tycko
- Subjects
Models, Molecular ,Magnetic Resonance Spectroscopy ,Molecular model ,Protein Conformation ,Amino Acid Motifs ,Molecular Sequence Data ,Beta sheet ,Biophysics ,Supramolecular Assemblies ,Peptide ,Fibril ,Protein Structure, Secondary ,Protein structure ,Alzheimer Disease ,Humans ,Computer Simulation ,Amino Acid Sequence ,Peptide sequence ,chemistry.chemical_classification ,Carbon Isotopes ,Amyloid beta-Peptides ,Nuclear magnetic resonance spectroscopy ,Peptide Fragments ,Crystallography ,Solid-state nuclear magnetic resonance ,chemistry - Abstract
The most well-established structural feature of amyloid fibrils is the cross-beta motif, an extended beta-sheet structure formed by beta-strands oriented perpendicular to the long fibril axis. Direct experimental identification of non-beta-strand conformations in amyloid fibrils has not been reported previously. Here we report the results of solid-state NMR measurements on amyloid fibrils formed by the 40-residue beta-amyloid peptide associated with Alzheimer's disease (Abeta(1-40)), prepared synthetically with pairs of (13)C labels at consecutive backbone carbonyl sites. The measurements probe the peptide backbone conformation in residues 24-30, a segment where a non-beta-strand conformation has been suggested by earlier sequence analysis, cross-linking experiments, and molecular modeling. Data obtained with the fpRFDR-CT, DQCSA, and 2D MAS exchange solid-state NMR techniques, which provide independent constraints on the phi and psi backbone torsion angles between the labeled carbonyl sites, indicate non-beta-strand conformations at G25, S26, and G29. These results represent the first site-specific identification and characterization of non-beta-strand peptide conformations in an amyloid fibril.
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198. Structure and dynamics elucidation of ionic liquids using multidimensional Laplace NMR
- Author
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Otto Mankinen, Ville-Veikko Telkki, Oleg N. Antzutkin, Muhammad Asadullah Javed, Andrei Filippov, Faiz Ullah Shah, Muhammad Kamran Aslam, Sergei Glavatskih, Susanna Ahola, and Pär Håkansson
- Subjects
POROUS-MEDIA ,Diffusion ,02 engineering and technology ,GASES ,010402 general chemistry ,01 natural sciences ,Catalysis ,chemistry.chemical_compound ,Computational chemistry ,Phase (matter) ,Materials Chemistry ,Laplace transform ,Chemistry ,Relaxation (NMR) ,Metals and Alloys ,Observable ,General Chemistry ,Nuclear magnetic resonance spectroscopy ,SELF-AGGREGATION ,021001 nanoscience & nanotechnology ,DIFFUSION ,0104 chemical sciences ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials ,CRYSTALS ,Chemical physics ,Ionic liquid ,Ceramics and Composites ,RELAXATION-TIMES ,0210 nano-technology ,Porous medium - Abstract
We demonstrate the ability of multidimensional Laplace NMR (LNMR), comprising relaxation and diffusion experiments, to reveal essential information about microscopic phase structures and dynamics of ionic liquids that is not observable using conventional NMR spectroscopy or other techniques.
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199. Density functional theory study of physisorption of ionic liquid pairs on hydroxylated and oxygen terminated α-SiO2 (001) surfaces
- Author
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Xiangjian Wang, Oleg. N. Antzutkin, and J. Andreas Larsson
- Subjects
Physics ,QC1-999 - Abstract
In this work, we investigate the ion pair tetramethylphosphonium cation, [P1,1,1,1]+, and bis(oxalato)borate anion, [BOB]−, as a model system for the study of ionic liquids interacting with both hydroxylated and oxygen terminated α-SiO2 (001) surfaces, using first-principles electronic structure theory. We use a single ionic pair and clusters of ion pairs, in order to have exclusively neutral supercell slab models. We use dispersion-corrected density functional theory (DFT) to ascertain that both the strong physical binding between the ions, dominated by ionic binding, and the weaker physical binding of ions to the different surfaces are correctly described. We have found that the binding of ion pairs is stronger to the hydroxylated α-SiO2 (001) surface compared to the oxygen terminated surface, which is attributed to the formation of H-binding with the oxygen atom(s) of the [BOB]− anion. Through rotation of ionic pair(s), we estimate the surface-ions energy barrier for translational movement and, thus, the strength of H-binding of the ions. At the surface of hydroxylated α-SiO2 (001), we have studied how water molecules form a network of H-binding with the OH groups of the surface and the [BOB]− anion, which offers an explanation for the reduction in the friction of ionic liquids on the inclusion of water. We suggest modeling protocols for simulation of ion pairs on surfaces, which can open up the possibility to use DFT to aid in designing and understanding the physicochemical mechanism of interactions of ionic materials (including ionic liquids) in various technological applications.
- Published
- 2024
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