219,028 results on '"Nakagawa, A."'
Search Results
152. Chemical inhibition of stomatal differentiation by perturbation of the master-regulatory bHLH heterodimer via an ACT-Like domain
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Ayami Nakagawa, Krishna Mohan Sepuru, Shu Jan Yip, Hyemin Seo, Calvin M. Coffin, Kota Hashimoto, Zixuan Li, Yasutomo Segawa, Rie Iwasaki, Hiroe Kato, Daisuke Kurihara, Yusuke Aihara, Stephanie Kim, Toshinori Kinoshita, Kenichiro Itami, Soon-Ki Han, Kei Murakami, and Keiko U. Torii
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Science - Abstract
Abstract Selective perturbation of protein interactions with chemical compounds enables dissection and control of developmental processes. Differentiation of stomata, cellular valves vital for plant growth and survival, is specified by the basic-helix-loop-helix (bHLH) heterodimers. Harnessing a new amination reaction, we here report a synthesis, derivatization, target identification, and mode of action of an atypical doubly-sulfonylated imidazolone, Stomidazolone, which triggers stomatal stem cell arrest. Our forward chemical genetics followed by biophysical analyses elucidates that Stomidazolone directly binds to the C-terminal ACT-Like (ACTL) domain of MUTE, a master regulator of stomatal differentiation, and perturbs its heterodimerization with a partner bHLH, SCREAM in vitro and in plant cells. On the other hand, Stomidazolone analogs that are biologically inactive do not bind to MUTE or disrupt the SCREAM-MUTE heterodimers. Guided by structural docking modeling, we rationally design MUTE with reduced Stomidazolone binding. These engineered MUTE proteins are fully functional and confer Stomidazolone resistance in vivo. Our study identifies doubly-sulfonylated imidazolone as a direct inhibitor of the stomatal master regulator, further expanding the chemical space for perturbing bHLH-ACTL proteins to manipulate plant development.
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- 2024
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153. Secondary acute angle closure glaucoma after 25-gauge pars plana vitrectomy for a macular hole: a case report
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Shigefumi Takahashi, Suguru Nakagawa, and Kiyoshi Ishii
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Secondary acute angle-closure glaucoma ,Posterior synechiae of the iris ,25-gauge pars plana vitrectomy ,Macular hole ,Face-down position ,Case report ,Medicine - Abstract
Abstract Background Posterior synechiae of the iris rarely cause secondary angle-closure glaucoma after pars plana vitrectomy, mainly reported in cases with high postoperative inflammation. The face-down position with gas tamponade can cause acute angle-closure glaucoma in phakic eyes owing to relative pupillary block. This report presents a rare case of pseudophakic eye with secondary acute angle-closure glaucoma after 25-gauge pars plana vitrectomy and long-term vitreous gas tamponade for a macular hole. Case presentation A 61-year-old Japanese female patient presented with a chief complaint of right-sided visual impairment that had persisted for several months. Slit-lamp examination revealed deep anterior chamber and moderate nuclear sclerotic cataracts in both eyes. The axial length of the eye was 23.53 mm right eye and 24.05 mm left eye, and the fundus examination revealed a full-thickness macular hole (stage 3) in the right eye. The patient underwent simultaneous cataract surgery and pars plana vitrectomy with 7-mm diameter 3-piece monofocal intraocular lens implantation, internal limiting membrane peeling, and air tamponade. There were no complications during surgery. Due to non-closure of the macular hole, a second pars plana vitrectomy with internal limiting membrane inverted flap and SF6 gas tamponade was performed 13 days later. The patient maintained face-down position after both surgeries, and 6 days after the second surgery, intraocular pressure was elevated to 53 mmHg, and acute angle-closure glaucoma with iris bombe was diagnosed in the right eye. A laser peripheral iridotomy was performed, resulting in a deepened anterior chamber, normalized intraocular pressure, and a closed macular hole. Conclusions This case presents a rare occurrence of secondary acute angle-closure glaucoma in a pseudophakic eye after 25-gauge minimally invasive pars plana vitrectomy and SF6 gas tamponade for macular hole. The cause was presumed to be posterior synechiae of the iris or relative pupillary block due to forward pushing of the intracapsular intraocular lens by vitreous gas. In cases where surgery is repeated without achieving macular hole closure, necessitating long-term face-down position, where vitreous gas is retained for an extended period, or when a large-diameter intraocular lens is implanted, secondary acute angle-closure glaucoma should be considered. This applies even when the 25-gauge pars plana vitrectomy is performed not for a highly invasive proliferative diabetic retinopathy but for macular hole repair, especially if the patient has a pseudophakic eye.
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- 2024
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154. Effects of supportive hemodialysis on the management of a pregnant woman with advanced chronic kidney disease: a case report and literature review
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Yutaka Kakizoe, Hiroko Okagawa, Mayuko Yamamoto, Koki Matsushita, Ryosuke Yamamura, Takahiro Hirano, Terumasa Nakagawa, Yuichiro Izumi, Takashige Kuwabara, Masataka Adachi, Takashi Ohba, and Masashi Mukoyama
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Pregnancy ,Advanced chronic kidney disease ,Supportive hemodialysis ,Diseases of the genitourinary system. Urology ,RC870-923 - Abstract
Abstract Background Pregnancy in women with chronic kidney disease (CKD) is associated with an increased risk of adverse maternal and fetal outcomes, including worsening renal function, hypertension, proteinuria, preeclampsia, preterm delivery, stillbirth, and intrauterine growth restriction. Some pregnant women with CKD may require dialysis after conception. Clinical guidelines provide recommendations for optimal hemodialysis prescription in pregnant women undergoing maintenance hemodialysis for end-stage kidney disease. However, the timing of initiation and optimal doses of hemodialysis for pregnant women with non-dialysis advanced CKD remain uncertain. Case presentation We describe the case of a 29-year-old woman with a history of CKD for at least 2 years. She was referred to our department with a serum creatinine level of 2.48 mg/dL and an estimated glomerular filtration rate of 20 mL/min/1.73 m2. Because she was found to be pregnant at the initial visit, she was referred to the Department of Obstetrics. At 23 weeks’ gestation, she was admitted due to threatened premature delivery and urinary tract infection, which were managed with ritodrine hydrochloride and antibiotics. Owing to maternal weight loss and asymmetrical fetal growth restriction, daily protein intake was increased from 40 g/day to 60–80 g/day. Additionally, supportive hemodialysis (three times per week) was initiated at 26 weeks’ gestation, and the pre-dialysis blood urea nitrogen (BUN) level was consistently maintained
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- 2024
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155. Risk Factors for Postoperative Mortality in Patients with Colorectal Diverticular Perforation
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Yutaro Nakagawa, Shuhei Ito, Kozue Nakahara, Kyohei Sakamoto, Yasuhito Hosoda, Takaomi Hayashi, Ren Nakamura, Kazune Komiya, Fuminori Ishii, Mitsuaki Morimoto, Yasushi Yoshida, and Tomoaki Noritomi
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colorectal diverticulum ,colorectal perforation ,prognostic factor ,polymyxin b-immobilized fiber column direct hemoperfusion ,antithrombotic drugs ,lactate levels ,Diseases of the digestive system. Gastroenterology ,RC799-869 - Abstract
Objectives: The prognosis of patients with colorectal diverticular perforations requiring surgery is poor, and the efficacy of polymyxin B-immobilized fiber column direct hemoperfusion (PMX-DHP) in these patients has not yet been established. In the present study, we evaluated the prognostic factors and the efficacy of PMX-DHP in surgically treated patients with perforated colorectal diverticula. Methods: Of the 116 patients with colorectal perforations who underwent emergency surgery at our hospital between April 2018 and May 2023, we retrospectively reviewed 46 patients with perforated colorectal diverticula. Preoperative, surgical, and postoperative factors were compared between the survival and mortality groups. Subgroup analysis was performed to evaluate the efficacy of PMX-DHP in severe cases. Results: The postoperative mortality group included 7 patients (15.2%), and PMX-DHP was performed in 14 (30.4%). PMX-DHP was performed significantly more often in the mortality group (P
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- 2024
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156. Supervised machine learning of outbred mouse genotypes to predict hepatic immunological tolerance of individuals
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Miwa Morita-Nakagawa, Kohji Okamura, Kazuhiko Nakabayashi, Yukiko Inanaga, Seiichi Shimizu, Wen-Zhi Guo, Masayuki Fujino, and Xiao-Kang Li
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Transplantation tolerance ,Supervised machine learning ,Liver transplantation ,Outbred mouse ,Medicine ,Science - Abstract
Abstract It is essential to elucidate the molecular mechanisms underlying liver transplant tolerance and rejection. In cases of mouse liver transplantation between inbred strains, immunological rejection of the allograft is reduced with spontaneous apoptosis without immunosuppressive drugs, which differs from the actual clinical result. This may be because inbred strains are genetically homogeneous and less heterogeneous than others. We exploited outbred CD1 mice, which show highly heterogeneous genotypes among individuals, to search for biomarkers related to immune responses and to construct a model for predicting the outcome of liver allografting. Of the 36 mice examined, 18 died within 3 weeks after transplantation, while the others survived for more than 6 weeks. Whole-exome sequencing of the 36 donors revealed more than 9 million variants relative to the C57BL/6 J reference. We selected 6517 single-nucleotide and indel variants and performed machine learning to determine whether or not we could predict the prognosis of each genotype. Models were built by both deep learning with a one-dimensional convolutional neural network and linear classification and evaluated by leave-one-out cross-validation. Given that one short-lived mouse died early in an accident, the models perfectly predicted the outcome of all individuals, suggesting the importance of genotype collection. In addition, linear classification models provided a list of loci potentially responsible for these responses. The present methods as well as results is likely to be applicable to liver transplantation in humans.
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- 2024
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157. Successful management with urgent haploidentical‐peripheral blood stem cell transplantation for a patient with severe aplastic anaemia who developed disseminated fungal infection following immunosuppressive therapy
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Norihito Ikenobe, Kentaro Fujimori, Yoshihiro Gocho, Shota Myojin, Masaki Yamada, Kenichi Imadome, Mikiko Miyasaka, Osamu Miyazaki, Akihiro Yoneda, Shotaro Matsumoto, Satoshi Nakagawa, Takao Deguchi, Akihiro Iguchi, Daisuke Tomizawa, Chikara Ogimi, Kimikazu Matsumoto, and Hirotoshi Sakaguchi
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aplastic anaemia ,fungal infection ,haploidentical peripheral blood stem cell transplantation ,Diseases of the blood and blood-forming organs ,RC633-647.5 - Abstract
Abstract Urgent haploidentical haematopoietic cell transplantation may be considered in cases of severe aplastic anaemia (SAA) without a human leukocyte antigen‐matched donor and suffering from severe infection. However, deciding on allogeneic transplantation in the setting of active systemic infection is challenging due to poor outcomes. This report presents a case of disseminated Magnusiomyces capitatus infection in a 5‐year‐old male who underwent immunosuppressive therapy for hepatitis‐associated SAA. To address the critical situation, granulocyte transfusion was promptly administered from the patient's mother, followed by unmanipulated haploidentical peripheral blood stem cell transplantation from the patient's father with posttransplant cyclophosphamide, ultimately resulting in successful rescue.
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- 2024
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158. Effects of mixed nuts as part of a Brazilian Cardioprotective diet on LDL-cholesterol in adult patients after myocardial infarction: a multicenter randomized controlled clinical trial
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Ângela Cristine Bersch-Ferreira, Camila Weschenfelder, Rachel Helena Vieira Machado, Renato Hideo Nakagawa Santos, Terrence M. Riley, Lucas Ribeiro da Silva, Debora Harumi Kodama Miyada, Erica Regina Ribeiro Sady, Erlon Oliveira de Abreu-Silva, Ligia Nasi Laranjeira, Alexandre Schaan de Quadros, Júlia Lorenzon dos Santos, Gabriela Corrêa Souza, Suena Medeiros Parahiba, Ana Paula Trussardi Fayh, Danielle Soares Bezerra, Ana Paula Perillo Ferreira Carvalho, Malaine Morais Alves Machado, Sandra Mary Lima Vasconcelos, Mayranne Victórya Rocha Santos, José Albuquerque de Figueiredo Neto, Luciana Pereira Pinto Dias, Francisca Eugenia Zaina Nagano, Cássia Cristina Paes de Almeida, Annie Seixas Bello Moreira, Rodrigo Damasceno de Oliveira, Marcelo Macedo Rogero, Geni Rodrigues Sampaio, Elizabeth Aparecida Ferraz da Silva Torres, Bernardete Weber, Alexandre Biasi Cavalcanti, and Aline Marcadenti
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Myocardial Infarction ,Diet, Healthy ,Nuts ,Cholesterol, LDL ,Randomized Controlled Trial [Publication Type] ,Nutrition. Foods and food supply ,TX341-641 ,Nutritional diseases. Deficiency diseases ,RC620-627 - Abstract
Abstract Background Nuts consumption is related to cardioprotective effects on primary cardiovascular prevention, but studies conducted in secondary prevention are small, scarce and controversial. The objective of this trial was to evaluate the effects of a regional and sustainable cardioprotective diet added or not with an affordable mixed nuts on cardiometabolic features in patients with previous myocardial infarction. Methods DICA-NUTS study is a national, multi-center, and superiority-parallel randomized clinical trial. Males and females over 40 years old diagnosed with previous myocardial infarction in the last 2 to 6 months were included. Patients were allocated into two groups: the Brazilian Cardioprotective diet (DICA Br) supplemented with 30 g/day of mixed nuts (10 g of peanuts; 10 g of cashew; 10 g of Brazil nuts) (intervention group, n = 193); or only DICA Br prescription (control group, n = 195). The primary outcome was low-density lipoprotein cholesterol means (in mg/dL) after 16 weeks. Secondary outcomes were other lipid biomarkers, glycemic and anthropometric data and diet quality. Results After adjustment for baseline values, participating study site, time since myocardial infarction and statin treatment regimen (high potency, moderate and low potency/no statins), no significant difference was found between the groups in low-density lipoprotein cholesterol concentrations (intervention-control difference: 3.48 mg/dL [-3.45 to 10.41], P = 0.32). Both groups improved their overall diet quality at the end of the study without differences between them after 16 weeks (intervention-control difference: 1.05 (-0.9 to 2.99); P = 0.29). Other lipids, glycemic profile and anthropometrics were also not different between study groups at the end of the study. Conclusion Adding 30 g/day of mixed nuts to the DICA Br for 16 weeks did not change lipid, glycemic and anthropometric features in the post-myocardial infarction setting. Trial registration This study is registered on ClinicalTrials.gov website under number NCT03728127 and its World Health Organization Universal Trial Number (WHO-UTN) is U1111-1259–8105.
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- 2024
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159. Prognostic value of estimated plasma volume status at discharge in acute myocardial infarction
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Kazutaka Nogi, Tomoya Ueda, Maki Nogi, Satomi Ishihara, Yasuki Nakada, Yukihiro Hashimoto, Hitoshi Nakagawa, Taku Nishida, Ayako Seno, Kenji Onoue, Makoto Watanabe, Yoshihiko Saito, and Shungo Hikoso
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Myocardial infarction ,Estimated plasma volume status ,Heart failure ,Congestion ,Diseases of the circulatory (Cardiovascular) system ,RC666-701 - Abstract
Abstract Aims Congestive heart failure (HF) is a common complication in patients with acute myocardial infarction (AMI). The estimated plasma volume status [ePVS = (100 − haematocrit)/haemoglobin] is used as the blood plasma volume index to determine the presence of congestion in patients with HF. However, the clinical impact of ePVS at discharge in patients with AMI remains unclear. This study aimed to investigate whether ePVS at discharge could determine the long‐term prognosis in patients with AMI. Methods and results We retrospectively identified patients with AMI with ePVS measured at discharge between January 2012 and December 2020. The primary endpoint was post‐discharge all‐cause death. The patients were divided into two groups according to an ePVS cut‐off value of 5.5%, which is commonly used in HF. In total, 1012 patients with AMI were included. The median age was 70 years (range, 61–78 years), and 76.4% of the patients were male. The ePVS > 5.5% (high‐ePVS) group included 365 patients (36.1%), and the all‐cause mortality rate in the total cohort was 17.7%. The log‐rank test revealed that the high‐ePVS group had a significantly higher rate of all‐cause death than the ePVS ≤ 5.5% (low‐ePVS) group (P
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- 2024
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160. Development of a simple evaluation method of soybean seedling emergence against soil crust
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Andressa C. S. Nakagawa, Kohtaro Iseki, and Kenta Ikazaki
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Soil crust ,seedling emergence ,soybean ,evaluation method ,Plant culture ,SB1-1110 - Abstract
Soil crust is of high concern in soybean cultivation due to its adverse impact on seedling emergence. Despite the necessity of soybean varieties with stable seedling emergence against soil surface crust, genotypic variation of this trait has not been well understood because there have been no general protocols widely applicable to a set of accessions. The major constraint in conducting such experiments is the difficulty in reproducing soil crust with uniform hardness for each set of experiments. In this study, a simple method that can evaluate the seedling emergence under the conditions of uniform hardness of soil crust using gypsum mixed soil was developed and tested for 82 soybean accessions. Among the tested accessions, five genotypes with high seedling emergence under soil crust conditions were identified.
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- 2024
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161. Targeting metabolic reprogramming to overcome drug resistance in advanced bladder cancer: insights from gemcitabine‐ and cisplatin‐resistant models
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Ichiro Kawahara, Hirofumi Yoshino, Wataru Fukumoto, Junya Arima, Saeki Saito, Gang Li, Ikumi Fukuda, Akihiko Mitsuke, Takashi Sakaguchi, Satoru Inoguchi, Ryosuke Matsushita, Masayuki Nakagawa, Shuichi Tatarano, Yasutoshi Yamada, and Hideki Enokida
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erdefitinib ,FASN ,FGFR ,HIF1α ,metabolism ,PHGDH ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Gemcitabine plus cisplatin (GC) combination chemotherapy is the primary treatment for advanced bladder cancer (BC) with unresectable or metastatic disease. However, most cases develop resistance to this therapy. We investigated whether drug resistance could be targeted through metabolic reprogramming therapies. Metabolomics analyses in our lab's gemcitabine‐ and cisplatin‐resistant cell lines revealed increased phosphoglycerate dehydrogenase (PHGDH) expression in gemcitabine‐resistant cells compared with parental cells. Isocitrate dehydrogenase 2 (IDH2) gain of function stabilized hypoxia‐inducible factor1α (HIF1α) expression, stimulating aerobic glycolysis. In gemcitabine‐resistant cells, elevated fumaric acid suppressed prolyl hydroxylase domain‐containing protein 2/Egl nine homolog 1 (PHD2) and stabilized HIF1α expression. PHGDH downregulation or inhibition in gemcitabine‐resistant BC cells inhibited their proliferation, migration, and invasion. Cisplatin‐resistant cells showed elevated fatty acid metabolism, upregulating fatty acid synthase (FASN) downstream of tyrosine kinase. Using the fibroblast growth factor receptor (FGFR) tyrosine kinase inhibitor erdafitinib, we inhibited malonyl‐CoA production, which is crucial for fatty acid synthesis, and thereby suppressed upregulated HIF1α expression. Combination treatment with NCT503 and erdafitinib synergistically suppressed tumor cell proliferation and induced apoptosis in vitro and in vivo. Understanding these mechanisms could enable innovative BC therapeutic strategies to be developed.
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- 2024
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162. Decision dynamics and landscape approach by individuals and collective groups: the case of Japanese rural land use in agricultural, forest, and boundary areas in an era of population decline
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Yoshitaka Miyake, Yoshinori Nakagawa, Yuta Uchiyama, Chika Takatori, and Ryo Kohsaka
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Land use planning ,Smart agriculture ,Alternative energy ,Smart forestry ,Strategic Choice Approach ,Environmental sciences ,GE1-350 - Abstract
Abstract Establishing a decision-making scheme for multiple land use types in a shrinking society is an urgent and persistent task. In particular, residents and governments face the complexity of cross-sectoral visions over concerned landscapes. This study examined the preference of residents for future visions and the effects of group deliberation in a Japanese rural community to enhance the current understanding of decision and learning processes on cross-sectoral land use types (i.e., agricultural land, forest land, and boundary areas) across ages and groups. This study posed the following questions: (i) what types of interactions do residents find among options on cross-sectoral land uses? and (ii) how do group deliberation influence the individual preferences of residents for land use? In the survey, the residents disclosed their preferences for the prepared visions over three land use types. The survey also enabled the comparison of choices before and after group deliberation. Regarding question (i), the residents’ choice prior to the deliberation demonstrated thematic coherence through land use categories. Smart technology and potential productivity improvement were selected across agriculture and forests. However, regarding question (ii), thematic coherence decreased after the group deliberation. The residents could communicate disagreements during group deliberation and consider the issues relatively independently over land use types, which separately views agriculture lands and forests. The choice after group discussions became increasingly embedded and influenced by residential areas and land ownership of residents. These findings provide unique insights into the group discussion on how individual decisions are affected. In summary, the preferences of cross-sectoral land use types did not converge but tended to diverge.
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- 2024
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163. Spontaneous CP violation in supersymmetric QCD
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Shota Nakagawa, Yuichiro Nakai, and Yaoduo Wang
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CKM Parameters ,CP Violation ,Supersymmetry ,Nuclear and particle physics. Atomic energy. Radioactivity ,QC770-798 - Abstract
Abstract We investigate a composite model of spontaneous CP violation based on a new supersymmetric QCD as a solution to the strong CP problem. The scalar components of the meson chiral superfields obtain complex vacuum expectation values to break CP symmetry spontaneously. Then, wavefunction renormalization for the quark kinetic terms provides the Cabibbo-Kobayashi-Maskawa (CKM) phase, while the strong CP phase θ ¯ $$ \overline{\theta} $$ is protected by nonrenormalization of the superpotential and hermiticity of the wavefunction renormalization factor. In our model, the right-handed down-type quark multiplets are given by composite states, enhancing their couplings to CP breaking fields, which is essential to realize the observed CKM phase. The non-perturbative dynamics generates the scale of spontaneous CP violation hierarchically lower than the Planck scale. We discuss potential corrections to θ ¯ $$ \overline{\theta} $$ and find a viable parameter space of the model to solve the strong CP problem without fine-tuning.
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- 2024
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164. Regional and temporal genotype profiling of Clostridioides difficile in a multi-institutional study in Japan
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Yusaku Sagisaka, Miyako Ishibashi, Daisuke Hosokawa, Hikaru Nakagawa, Shinya Yonogi, Kenta Minami, Youichi Suzuki, Taku Ogawa, Akira Ukimura, Takashi Nakano, Jun Komano, and The C. difficile Molecular Epidemiology Network of Japan
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Clostridioides difficile ,Infection ,Molecular epidemiology ,Region-specific genotype ,Cross-regional genotype ,Medicine ,Science - Abstract
Abstract Clostridioides difficile, a cause of healthcare-associated infections, poses a significant global health threat. This multi-institutional retrospective study focuses on epidemic dynamics, emphasizing minor and toxin-negative clinical isolates through high-resolution genotyping. The genotype of the C. difficile clinical isolates during 2005 to 2022 was gathered from 14 hospitals across Japan (N = 982). The total number of unique genotypes was 294. Some genotypes were identified in every hospital (cross-regional genotypes), while others were unique to a specific hospital or those in close geographic proximity (region-specific genotypes). Notably, a hospital located in a sparsely populated prefecture exhibited the highest prevalence of region-specific genotypes. The isolation rate of cross-regional genotypes positively correlated with the human mobility flow. A 6-month interval analysis at a university hospital from 2019 to 2021 revealed a temporal transition of the genotype dominance. The frequent isolation of identical genotypes over a brief timeframe did not always align with the current criteria for defining nosocomial outbreaks. This study highlights the presence of diverse indigenous C. difficile strains in regional environments. The cross-regional strains may have a higher competency to spread in the human community. The longitudinal analysis underscores the need for further investigation into potential nosocomial spread.
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- 2024
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165. Label-free ghost cytometry for manufacturing of cell therapy products
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Kazuki Teranishi, Keisuke Wagatsuma, Keisuke Toda, Hiroko Nomaru, Yuichi Yanagihashi, Hiroshi Ochiai, Satoru Akai, Emi Mochizuki, Yuuki Onda, Keiji Nakagawa, Keiki Sugimoto, Shinya Takahashi, Hideto Yamaguchi, and Sadao Ota
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Medicine ,Science - Abstract
Abstract Automation and quality control (QC) are critical in manufacturing safe and effective cell and gene therapy products. However, current QC methods, reliant on molecular staining, pose difficulty in in-line testing and can increase manufacturing costs. Here we demonstrate the potential of using label-free ghost cytometry (LF-GC), a machine learning-driven, multidimensional, high-content, and high-throughput flow cytometry approach, in various stages of the cell therapy manufacturing processes. LF-GC accurately quantified cell count and viability of human peripheral blood mononuclear cells (PBMCs) and identified non-apoptotic live cells and early apoptotic/dead cells in PBMCs (ROC-AUC: area under receiver operating characteristic curve = 0.975), T cells and non-T cells in white blood cells (ROC-AUC = 0.969), activated T cells and quiescent T cells in PBMCs (ROC-AUC = 0.990), and particulate impurities in PBMCs (ROC-AUC ≧ 0.998). The results support that LF-GC is a non-destructive label-free cell analytical method that can be used to monitor cell numbers, assess viability, identify specific cell subsets or phenotypic states, and remove impurities during cell therapy manufacturing. Thus, LF-GC holds the potential to enable full automation in the manufacturing of cell therapy products with reduced cost and increased efficiency.
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- 2024
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166. Erythema Nodosum Secondary to CD5-Positive Diffuse Large B-Cell Lymphoma as a Paraneoplastic Symptom: A Case Report
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Masaya Abe, Kyotaro Ohno, Yuki Nakagawa, Yasuharu Sato, and Hiroyuki Sugiura
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cd5-positive diffuse large b-cell lymphoma ,erythema nodosum ,immune complexes ,paraneoplastic symptoms ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Introduction: Erythema nodosum (EN) is the most common form of panniculitis. EN can be idiopathic or secondary to an underlying systemic disease, infection, drug use, or tumor. CD5-positive diffuse large B-cell lymphoma (CD5+ DLBCL) is a relapsed and refractory lymphoma, and further understanding of its pathology is required. We report a case of newly diagnosed CD5+ DLBCL with concomitant EN. Within the scope of our search, there were no reports of CD5+ DLBCL complicated with EN. Case Presentation: A 79-year-old woman experienced swelling, warmth, redness, and pain in both legs and a mass lesion on the right side of the back at almost the same time. The respective lesions were diagnosed as EN and CD5+ DLBCL by biopsy. With chemotherapy, the lymphoma and EN improved in parallel courses. The patient has completed scheduled chemotherapy, and there has been no recurrence of swelling in the legs or mass on the right side of the back. Discussion: The lymphoma and EN developed simultaneously and followed a parallel clinical course after chemotherapy, suggesting that EN was a paraneoplastic symptom of CD5+ DLBCL. Recognizing and treating underlying malignancies in patients presenting with EN is crucial.
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- 2024
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167. Investigating the link between temperamental and motor development: a longitudinal study of infants aged 6–42 months
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Atsuko Nakagawa, Taishi Miyachi, Makiko Tomida, Taro Matsuki, Satoshi Sumi, Masayuki Imaeda, Akio Nakai, Takeshi Ebara, and Michihiro Kamijima
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Coordinated movement ,Temperament ,Infant ,Toddler ,Longitudinal study ,Pediatrics ,RJ1-570 - Abstract
Abstract Background Since the 1920s, motor development has been a strong research theme, focusing on infants' acquisition of motor skills, such as turning over and crawling. In the 1980s, a dynamic systems approach began emphasizing children's own motivation, which helped explain individual differences in the emergence of motor skills. However, few studies have examined factors contributing to individual differences in early motor development. In response, we investigated directional associations between temperament and motor development in children aged 6 months to 3 years. Method The Japan Environment and Children’s Study (JECS-A) recruited mothers between January 2011 and March 2014. 2,639 mothers were sent a questionnaire at 6 months, and responses were received from 1,657 of them, with full data for children aged 6 months, 2 years, and 3 years, including from three mothers of twins, were analyzed through structural equation modeling. Question items regarding fine and gross motor activities at each age were selected by pediatric neurologists specializing in developmental disorders. The Japanese version of the Little Developmental Coordination Disorder Questionnaire was administered at 42 months. Temperament was assessed through the parent-reported Behavior Questionnaire (short version) for infants, toddlers, and children. In all three measures, Surgency and Negative Affectivity were extracted, and Effortful Control, a major form of self-regulation, was found from toddlerhood onward, as in previous studies. Results A path diagram reveals that at 6 months, Surgency and Orienting/Regulation interacted positively with the motor function (respectively, r = .57; r = 40, ps
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- 2024
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168. Comprehensive posttranslational modifications in the testis-specific histone variant H3t protein validated in tagged knock-in mice
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Takayuki Kawaguchi, Michihiro Hashimoto, Reiko Nakagawa, Ryunosuke Minami, Masahito Ikawa, Jun-ichi Nakayama, and Jun Ueda
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Histone variant ,Posttranslational modifications ,Histone modifications ,Spermatogenesis ,Chromatin ,Mass spectrometry ,Medicine ,Science - Abstract
Abstract During the development of multicellular organisms and cell differentiation, the chromatin structure in the cell nucleus undergoes extensive changes, and the nucleosome structure is formed by a combination of various histone variants. Histone variants with diverse posttranslational modifications are known to play crucial roles in different regulatory functions. We have previously reported that H3t, a testis-specific histone variant, is essential for spermatogenesis. To elucidate the function of this chromatin molecule in vivo, we generated knock-in mice with a FLAG tag attached to the carboxyl terminus of H3t. In the present study, we evaluated the utility of the generated knock-in mice and comprehensively analyzed posttranslational modifications of canonical H3 and H3t using mass spectrometry. Herein, we found that H3t-FLAG was incorporated into spermatogonia and meiotic cells in the testes, as evidenced by immunostaining of testicular tissue. According to the mass spectrometry analysis, the overall pattern of H3t-FLAG posttranslational modification was comparable to that of the control H3, while the relative abundances of certain specific modifications differed between H3t-FLAG and the control bulk H3. The generated knock-in mice could be valuable for analyzing the function of histone variants in vivo.
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- 2024
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169. Contrasting responses of summer precipitation to orbital forcing in Japan and China over the past 450 kyr
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T. Matsushita, M. Harada, H. Ueda, T. Nakagawa, Y. Kubota, Y. Suzuki, and Y. Kamae
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Environmental pollution ,TD172-193.5 ,Environmental protection ,TD169-171.8 ,Environmental sciences ,GE1-350 - Abstract
Understanding orbital-scale changes in East Asian summer monsoon (EASM) precipitation is a fundamental issue in paleoclimate research as it helps assess the response of the East Asian monsoon to different climatic forcings, such as insolation, ice volume, and greenhouse gases. However, due to inconsistencies between different proxies, the fundamental driving force for EASM variability remains controversial. The present study simulated the global climate under given insolation changes over the past 450 kyr using a climate model, version 2.3 of the Meteorological Research Institute's Coupled General Circulation Model (MRI-CGCM2.3). Changes in summer insolation over East Asia resulted in distinct climatic responses in China and Japan: an increase in summer insolation led to increased summer precipitation in China and decreased summer precipitation in Japan. Composite analyses of simulated climate under strong boreal-summer insolation suggest that warming of the Indian Ocean occurs under intense insolation, resulting in the intensification of the North Pacific subtropical high (sub-high). The northern shift in the monsoon front, associated with the intensified sub-high, leads to an increase in rainfall in the coastal area of China. In contrast, the intensity of the EASM around Japan is affected by the strength of the North Pacific High. Under strong insolation, the increase in thermal contrast between the North American continent and the North Pacific Ocean intensifies the North Pacific High, decreasing summer precipitation around Japan. Thus, strong regional differences in the effects of solar-insolation variability on summer precipitation in East Asia exist due to interactions with different ocean basins.
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- 2024
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170. Clinical outcomes and radiolucent line analysis in cementless mobile-bearing total knee arthroplasty: a prospective multicentre study in Japan
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Yukihide Minoda, Shigeru Nakagawa, Hideki Ueyama, Hideki Warashina, Michitaka Kato, Tomoyuki Matsumoto, Masahiro Nozaki, Makoto Kobayashi, Yukie Horikoshi, and Junko Yasuda
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Medicine ,Science - Abstract
Abstract The objective of this study was to assess radiolucent lines (RLLs) and to determine their effect on clinical outcomes of the newly introduced cementless mobile-bearing total knee arthroplasty (TKA) system. This was prospective, multicentre study. Seventy-eight patients with knee osteoarthritis who underwent primary TKA were enrolled. Patient-reported outcome measures (PROMs) and radiographic assessments were evaluated at preoperative baseline and at 6 weeks, 1 year, and 2 years after surgery. KOOS, PKIP, 2011KSS, EQ-5D-3L and SKO improved from preoperative baseline to all postoperative timepoints, with no loosening of components. No RLLs were detected at 6 weeks after surgery. However, RLLs ≥ 1 mm developed in 2.8% of the patients for the femur and 9.7% for the tibia at 1 year after surgery, and values were 5.7% and 10.9%, respectively, at 2 years after surgery. RLL incidence was not correlated with PROMs. Age, sex, body mass index, range of motion knee flexion, posterior cruciate ligament treatment and β angle did not impact the occurrence of RLLs. There were no intraoperative complications, revisions or reoperations. This TKA system improved PROMs and showed less incidence of RLLs compared to the previous reported TKA without implant-related complications.
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- 2024
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171. Spatiotemporal dynamics of fast electron heating in solid-density matter via XFEL
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H. Sawada, T. Yabuuchi, N. Higashi, T. Iwasaki, K. Kawasaki, Y. Maeda, T. Izumi, Y. Nakagawa, K. Shigemori, Y. Sakawa, C. B. Curry, M. Frost, N. Iwata, T. Ogitsu, K. Sueda, T. Togashi, S. X. Hu, S. H. Glenzer, A. J. Kemp, Y. Ping, and Y. Sentoku
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Science - Abstract
Abstract High-intensity, short-pulse lasers are crucial for generating energetic electrons that produce high-energy-density (HED) states in matter, offering potential applications in igniting dense fusion fuels for fast ignition laser fusion. High-density targets heated by these electrons exhibit spatially non-uniform and highly transient conditions, which have been challenging to characterize due to limitations in diagnostics that provide simultaneous high spatial and temporal resolution. Here, we employ an X-ray Free Electron Laser (XFEL) to achieve spatiotemporally resolved measurements at sub-micron and femtosecond scales on a solid-density copper foil heated by laser-driven fast electrons. Our X-ray transmission imaging reveals the formation of a solid-density hot plasma localized to the laser spot size, surrounded by Fermi degenerate, warm dense matter within a picosecond, and the energy relaxation occurring within the hot plasma over tens of picoseconds. These results validate 2D particle-in-cell simulations incorporating atomic processes and provide insights into the energy transfer mechanisms beyond current simulation capabilities. This work significantly advances our understanding of rapid fast electron heating and energy relaxation in solid-density matter, serving as a key stepping stone towards efficient high-density plasma heating and furthering the fields of HED science and inertial fusion energy research using intense, short-pulse lasers.
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- 2024
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172. Pathogenesis of human atheroma necrotic core: degradation of connective tissue fibers and possible involvement of cathepsin K
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Kazunori Nakagawa and Yutaka Nakashima
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Human ,Atheroma ,Necrotic core ,Liponecrotic tissue ,Collagen type I ,CTX-I ,Medicine - Abstract
Abstract Background Atheroma is a serious atherosclerotic lesion related to plaque rupture, thrombosis, and ischemic disease. To clarify the pathogenesis of human atheroma, particularly the formation of the liponecrotic tissue in the necrotic core, the distribution of connective tissue fibers, such as collagen and elastic fibers, and related substances was investigated in this study. Methods Atherosclerotic lesions in human coronary arteries were classified into three categories: pathologic intimal thickening (PIT), atheroma with lipid core (ALC), and atheroma with necrotic core (ANC). PIT and ALC consisted of the lipid pool and the lipid core, respectively. The necrotic core of ANC was composed of a lipid core-like region and liponecrotic tissue containing amorphous materials and lacking cells and connective tissue fibers. The distribution of collagen type I, elastin, C-terminal crosslinked telopeptide of collagen type I (CTX-I), and cathepsin K (CatK) was investigated through immunohistochemistry. CTX-I is a fragmented peptide consisting of the C-terminal region of collagen type I that is generated by CatK. The distribution of denatured and unfolded collagen chains was also investigated through collagen hybridizing peptide staining. Results Collagen type I, denatured and unfolded collagen chains, and elastin were positively stained in the PIT, ALC, and lipid core-like region of ANC. However, they were negatively stained in the liponecrotic tissue of ANC. CTX-I and CatK were positively stained in all four regions, and their grade of staining appeared to show a positive relationship. Both CTX-I and CatK demonstrated higher staining grades in the liponecrotic tissue. These findings suggested that pre-existing collagen type I was severely degraded by CatK, resulting in the production of CTX-I in the liponecrotic tissue, and that pre-existing elastin was also degraded in this region. CatK was mainly found in macrophage foam cells, many of which were localized within and around the liponecrotic tissue. Conclusions This study suggests that the liponecrotic tissue in the necrotic core of human atheroma is formed by severe degradation of pre-existing connective tissue fibers and consequent collapse of tissue structure. This degradation is likely caused by proteolytic enzymes, such as CatK, secreted by macrophage foam cells.
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- 2024
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173. Vesicovaginal fistula and bladder calculus formation secondary to long‐term retention of an intrauterine device
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Masahiro Goto, Tomoyuki Kaneko, Naoki Yamamine, Kazuki Yanagida, Michio Noda, Yuumi Tokura, Itsuki Yoshimura, Taketo Kawai, and Tohru Nakagawa
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intrauterine device migration ,intrauterine devices ,urinary bladder calculi ,uterine perforation ,vesicovaginal fistula ,Diseases of the genitourinary system. Urology ,RC870-923 - Abstract
Introduction Although uterine perforation is a rare but serious complication, intrauterine devices are globally popular and effective contraceptive methods. Case presentation A 76‐year‐old female patient manifesting symptoms of vaginal leakage and lower abdominal discomfort was admitted to our hospital. Diagnostic imaging identified a vesicovaginal fistula and bladder calculi attributable to perforation of the bladder by an intrauterine device that had been inserted over four decades ago. The patient underwent open surgery for cystolith removal and vesicovaginal fistula repair. Conclusions If a patient with an intrauterine device complains of bladder stones or ongoing lower urinary tract symptoms, bladder perforation caused by the device should be considered in the differential diagnosis.
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- 2024
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174. Relationship of interleukin‐16 with different phenogroups in acute heart failure with preserved ejection fraction
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Shunsuke Tamaki, Yohei Sotomi, Yoshiyuki Nagai, Ryu Shutta, Daisaku Masuda, Nobuhiko Makino, Shizuya Yamashita, Masahiro Seo, Takahisa Yamada, Akito Nakagawa, Yoshio Yasumura, Yusuke Nakagawa, Masamichi Yano, Takaharu Hayashi, Shungo Hikoso, Daisaku Nakatani, Tomohito Ohtani, Yasushi Sakata, and the OCVC‐Heart Failure Investigators
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Acute decompensated heart failure ,Heart failure with preserved ejection fraction ,Inflammation ,Phenogroup ,Diseases of the circulatory (Cardiovascular) system ,RC666-701 - Abstract
Abstract Aims Interleukin‐16 (IL‐16) has been reported to mediate left ventricular myocardial fibrosis and stiffening in patients with heart failure with preserved ejection fraction (HFpEF). We sought to elucidate whether IL‐16 has a distinct impact on pathophysiology and prognosis across different subphenotypes of acute HFpEF. Methods and results We analysed 211 patients enrolled in a prospective multicentre registry of acute decompensated HFpEF for whom serum IL‐16 levels after stabilization were available (53% female, median age 81 [interquartile range 75–85] years). We divided this sub‐cohort into four phenogroups using our established clustering algorithm. The study endpoint was all‐cause death. Patients were subclassified into phenogroup 1 (‘rhythm trouble’ [n = 69]), phenogroup 2 (‘ventricular‐arterial uncoupling’ [n = 49]), phenogroup 3 (‘low output and systemic congestion’ [n = 41]), and phenogroup 4 (‘systemic failure’ [n = 52]). After a median follow‐up of 640 days, 38 patients had died. Among the four phenogroups, phenogroup 2 had the highest IL‐16 level. The IL‐16 level showed significant associations with indices of cardiac hypertrophy, diastolic dysfunction, and congestion only in phenogroup 2. Furthermore, the IL‐16 level had a significant predictive value for all‐cause death only in phenogroup 2 (C‐statistic 0.750, 95% confidence interval 0.606–0.863, P = 0.017), while there was no association between the IL‐16 level and the endpoint in the other phenogroups. Conclusions Our results indicated that the serum IL‐16 level had a significant association with indices that reflect the pathophysiology and prognosis of HFpEF in a specific phenogroup in acute HFpEF.
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- 2024
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175. Low‐density lipoprotein cholesterol, erythrocyte, and platelet in heart failure with preserved ejection fraction
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Masamichi Yano, Masami Nishino, Shodai Kawanami, Kohei Ukita, Akito Kawamura, Koji Yasumoto, Masaki Tsuda, Naotaka Okamoto, Yasuharu Matsunaga‐Lee, Yasuyuki Egami, Takahisa Yamada, Yoshio Yasumura, Masahiro Seo, Takaharu Hayashi, Akito Nakagawa, Yusuke Nakagawa, Shunsuke Tamaki, Yohei Sotomi, Daisaku Nakatani, Shungo Hikoso, and Yasushi Sakata
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Erythrocyte ,Heart failure with preserved ejection fraction ,Low‐density lipoprotein cholesterol ,Platelet ,Prognosis ,Diseases of the circulatory (Cardiovascular) system ,RC666-701 - Abstract
Abstract Aims Low‐density lipoprotein cholesterol (LDL‐C), anaemia and low platelets have been associated with worse clinical outcomes in heart failure patients. We investigated the relationship between the combination of these three components and clinical outcome in patients with heart failure with preserved ejection fraction (HFpEF). Methods and results We examined the data of 1021 patients with HFpEF hospitalized with acute decompensated heart failure (HF) from the PURSUIT‐HFpEF registry, a prospective, multicenter observational study. The enrolled patients were classified into four groups by an LEP (LDL‐C, Erythrocyte, and Platelet) score of 0 to 3 points, with 1 point each for LDL‐C, erythrocyte and platelet values less than the cut‐off values as calculated by receiver operating characteristic curve analysis. The endpoint, a composite of all‐cause death and HF readmission, was evaluated among the four groups. Median follow‐up duration was 579 [300, 978] days. Risk of the composite endpoint significantly differed among the four groups (P
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- 2024
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176. Severe mitral regurgitation in non-hypertrophic cardiomyopathy caused by systolic anterior motion of the mitral valve
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Aonuma, Tatsuya, Kawabata, Naoko, Date, Ayumi, Saito, Erika, Akasaka, Kazumi, Kamiya, Hiroyuki, and Nakagawa, Naoki
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- 2024
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177. Classical variational optimization of PREPARE circuit for quantum phase estimation of quantum chemistry Hamiltonians
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Morisaki, Hayata, Mitarai, Kosuke, Fujii, Keisuke, and Nakagawa, Yuya O.
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Quantum Physics - Abstract
We propose a method for constructing $\texttt{PREPARE}$ circuits for quantum phase estimation of a molecular Hamiltonian in quantum chemistry by using variational optimization of quantum circuits solely on classical computers. The $\texttt{PREPARE}$ circuit generates a quantum state which encodes the coefficients of the terms in the Hamiltonian as probability amplitudes and plays a crucial role in the state-of-the-art efficient implementations of quantum phase estimation. We employ the automatic quantum circuit encoding algorithm [Shirakawa $\textit{et al.}$, arXiv:2112.14524] to construct $\texttt{PREPARE}$ circuits, which requires classical simulations of quantum circuits of $O(\log N)$ qubits with $N$ being the number of qubits of the Hamiltonian. The generated $\texttt{PREPARE}$ circuits do not need any ancillary qubit. We demonstrate our method by investigating the number of $T$-gates of the obtained $\texttt{PREPARE}$ circuits for quantum chemistry Hamiltonians of various molecules, which shows a constant-factor reduction compared to previous approaches that do not use ancillary qubits. Since the number of available logical qubits and $T$ gates will be limited at the early stage of the fault-tolerant quantum computing, the proposed method is particularly of use for performing the quantum phase estimation with such limited capability., Comment: 9 pages, 6 figures
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- 2023
178. Dynamics of pinned quantized vortices in superfluid $^4$He in a microelectromechanical oscillator
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Nakagawa, Tomo, Tsubota, Makoto, Gunther, Keegan, and Lee, Yoonseok
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Condensed Matter - Other Condensed Matter ,Physics - Fluid Dynamics - Abstract
We numerically studied the vortex dynamics at zero temperature in superfluid $^4$He confined between two parallel rough solid boundaries, one of which oscillates in a shear mode. This study was motivated by the experimental work by Barquist $et$ $al.$ which employed a microelectromechanical systems (MEMS) oscillator operating in superfluid $^4$He at a near-zero temperature. Their experiments suggest that the motion of the MEMS oscillator is damped by quantized vortices. In our study, we postulated that this damping effect was closely associated with vortex pinning phenomena and developed pinning models. Our primary objective is to understand the vortex dynamics in the presence of pinning and to provide insight into the experimental observations regarding the damping mechanism. We confirmed that Kelvin waves were excited in the pinned vortices when the oscillation frequency of the solid boundary matched with the mode frequency of the Kelvin wave. Additionally, we examined the formation and evolution of vortex tangles between the boundaries. The vortex tangle was suppressed in the presence of pinning, while the absence of pinning allowed to form well developed vortex tangle resulting in turbulence. Finally, by evaluating the tension of pinned vortices we extracted the damping force acting on the solid boundaries., Comment: 11 pages + supplement, 17 figures
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- 2023
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179. Demonstrating Quantum Computation for Quasiparticle Band Structures
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Ohgoe, Takahiro, Iwakiri, Hokuto, Kohda, Masaya, Ichikawa, Kazuhide, Nakagawa, Yuya O., Valencia, Hubert Okadome, and Koh, Sho
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Quantum Physics ,Condensed Matter - Materials Science - Abstract
Understanding and predicting the properties of solid-state materials from first-principles has been a great challenge for decades. Owing to the recent advances in quantum technologies, quantum computations offer a promising way to achieve this goal. Here, we demonstrate the first-principles calculation of a quasiparticle band structure on actual quantum computers. This is achieved by hybrid quantum-classical algorithms in conjunction with qubit-reduction and error-mitigation techniques. Our demonstration will pave the way to practical applications of quantum computers.
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- 2023
180. Superconductivity in a van der Waals layered quasicrystal
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Tokumoto, Yuki, Hamano, Kotaro, Nakagawa, Sunao, Kamimura, Yasushi, Suzuki, Shintaro, Tamura, Ryuji, and Edagawa, Keiichi
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Condensed Matter - Materials Science - Abstract
van der Waals (vdW) layered transition-metal chalcogenides are attracting significant attention owing to their fascinating physical properties. This group of materials consists of abundant members with various elements, having a variety of different structures. However, all vdW layered materials studied to date have been limited to crystalline materials, and the physical properties of vdW layered quasicrystals have not yet been reported. Here, we report on the discovery of superconductivity in a vdW layered quasicrystal of Ta1.6Te. The electrical resistivity, magnetic susceptibility, and specific heat of the Ta1.6Te quasicrystal fabricated by reaction sintering, unambiguously validated the occurrence of bulk superconductivity at a transition temperature of ~1 K. This discovery can pioneer new research on assessing the physical properties of vdW layered quasicrystals as well as two-dimensional quasicrystals; moreover, it paves the way toward new frontiers of superconductivity in thermodynamically stable quasicrystals, which has been the predominant challenge facing condensed matter physics since the discovery of quasicrystals almost four decades ago.
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- 2023
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181. Geometric Mean Type of Proportional Reduction in Variation Measure for Two-Way Contingency Tables
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Urasaki, Wataru, Wada, Yuki, Nakagawa, Tomoyuki, Tahata, Kouji, and Tomizawa, Sadao
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Statistics - Methodology - Abstract
In a two-way contingency table analysis with explanatory and response variables, the analyst is interested in the independence of the two variables. However, if the test of independence does not show independence or clearly shows a relationship, the analyst is interested in the degree of their association. Various measures have been proposed to calculate the degree of their association, one of which is the proportional reduction in variation (PRV) measure which describes the PRV from the marginal distribution to the conditional distribution of the response. The conventional PRV measures can assess the association of the entire contingency table, but they can not accurately assess the association for each explanatory variable. In this paper, we propose a geometric mean type of PRV (geoPRV) measure that aims to sensitively capture the association of each explanatory variable to the response variable by using a geometric mean, and it enables analysis without underestimation when there is partial bias in cells of the contingency table. Furthermore, the geoPRV measure is constructed by using any functions that satisfy specific conditions, which has application advantages and makes it possible to express conventional PRV measures as geometric mean types in special cases., Comment: 16 pages
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- 2023
182. Accelerated variational quantum eigensolver with joint Bell measurement
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Cao, Chenfeng, Yano, Hiroshi, and Nakagawa, Yuya O.
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Quantum Physics - Abstract
The variational quantum eigensolver (VQE) stands as a prominent quantum-classical hybrid algorithm for near-term quantum computers to obtain the ground states of molecular Hamiltonians in quantum chemistry. However, due to the non-commutativity of the Pauli operators in the Hamiltonian, the number of measurements required on quantum computers increases significantly as the system size grows, which may hinder practical applications of VQE. In this work, we present a protocol termed joint Bell measurement VQE (JBM-VQE) to reduce the number of measurements and speed up the VQE algorithm. Our method employs joint Bell measurements, enabling the simultaneous measurement of the absolute values of all expectation values of Pauli operators present in the Hamiltonian. In the course of the optimization, JBM-VQE estimates the absolute values of the expectation values of the Pauli operators for each iteration by the joint Bell measurement, while the signs of them are measured less frequently by the conventional method to measure the expectation values. Our approach is based on the empirical observation that the signs do not often change during optimization. We illustrate the speed-up of JBM-VQE compared to conventional VQE by numerical simulations for finding the ground states of molecular Hamiltonians of small molecules, and the speed-up of JBM-VQE at the early stage of the optimization becomes increasingly pronounced in larger systems. Our approach based on the joint Bell measurement is not limited to VQE and can be utilized in various quantum algorithms whose cost functions are expectation values of many Pauli operators., Comment: 14 pages, 8 figures
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- 2023
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183. Sum representations of Appell-Lauricella functions over finite fields using confluent hypergeometric functions and their applications
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Nakagawa, Akio
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Mathematics - Number Theory - Abstract
We prove sum representations of Appell-Lauricella functions over a finite field using confluent hypergeometric functions over the finite field. As an application, we also prove transformation formulas, summation formulas and reduction formulas for Appell-Lauricella functions over the finite field., Comment: 28 pages
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- 2023
184. ALMA ACA detection of submillimeter emission associated with the west hot spot of the radio galaxy Pictor A
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Isobe, Naoki, Nagai, Hiroshi, Kino, Motoki, Baba, Shunsuke, Nakagawa, Takao, Sunada, Yuji, and Tashiro, Makoto
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Astrophysics - High Energy Astrophysical Phenomena ,Astrophysics - Astrophysics of Galaxies - Abstract
In order to investigate the far-infrared excess detected from the west hot spot of the radio galaxy Pictor A with the Herschel observatory, a submillimeter photometry is performed with the Atacama Compact Array (ACA) of the Atacama Large Millimeter/submillimeter Array at Band 8 with the reference frequency of 405 GHz. A submillimeter source is discovered at the radio peak of the hot spot. Because the 405 GHz flux density of the source, $80.7\pm3.1$ mJy, agrees with the extrapolation of the synchrotron radio spectrum, the far-infrared excess is suggested to exhibit no major contribution at the ACA band. In contrast, by subtracting the power-law spectrum tightly constrained by the radio and ACA data, the significance of the excess in the Herschel band is well confirmed. No diffuse submillimeter emission is detected within the ACA field of view, and thus, the excess is ascribed to the west hot spot itself. In comparison to the previous estimate based on the Herschel data, the relative contribution of the far-infrared excess is reduced by a factor of $\sim 1.5$. The spectrum of the excess below the far-infrared band is determined to be harder than that of the diffusive shock acceleration. This strengthens the previous interpretation that the excess originates via the magnetic turbulence in the substructures within the hot spot. The ACA data are utilized to evaluate the magnetic field strength of the excess and of diffuse radio structure associated to the hot spot., Comment: 10 pages,4 figures, 3 tables, accepted for ApJ
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- 2023
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185. Upscaling Global Hourly GPP with Temporal Fusion Transformer (TFT)
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Nakagawa, Rumi, Chau, Mary, Calzaretta, John, Keenan, Trevor, Vahabi, Puya, Todeschini, Alberto, Bassiouni, Maoya, and Kang, Yanghui
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Computer Science - Machine Learning - Abstract
Reliable estimates of Gross Primary Productivity (GPP), crucial for evaluating climate change initiatives, are currently only available from sparsely distributed eddy covariance tower sites. This limitation hampers access to reliable GPP quantification at regional to global scales. Prior machine learning studies on upscaling \textit{in situ} GPP to global wall-to-wall maps at sub-daily time steps faced limitations such as lack of input features at higher temporal resolutions and significant missing values. This research explored a novel upscaling solution using Temporal Fusion Transformer (TFT) without relying on past GPP time series. Model development was supplemented by Random Forest Regressor (RFR) and XGBoost, followed by the hybrid model of TFT and tree algorithms. The best preforming model yielded to model performance of 0.704 NSE and 3.54 RMSE. Another contribution of the study was the breakdown analysis of encoder feature importance based on time and flux tower sites. Such analysis enhanced the interpretability of the multi-head attention layer as well as the visual understanding of temporal dynamics of influential features., Comment: Accepted Oral Presentation at CVPR 2023 MultiEarth Workshop
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- 2023
186. Efficient Model Selection for Predictive Pattern Mining Model by Safe Pattern Pruning
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Yoshida, Takumi, Hanada, Hiroyuki, Nakagawa, Kazuya, Taji, Kouichi, Tsuda, Koji, and Takeuchi, Ichiro
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Statistics - Machine Learning ,Computer Science - Machine Learning - Abstract
Predictive pattern mining is an approach used to construct prediction models when the input is represented by structured data, such as sets, graphs, and sequences. The main idea behind predictive pattern mining is to build a prediction model by considering substructures, such as subsets, subgraphs, and subsequences (referred to as patterns), present in the structured data as features of the model. The primary challenge in predictive pattern mining lies in the exponential growth of the number of patterns with the complexity of the structured data. In this study, we propose the Safe Pattern Pruning (SPP) method to address the explosion of pattern numbers in predictive pattern mining. We also discuss how it can be effectively employed throughout the entire model building process in practical data analysis. To demonstrate the effectiveness of the proposed method, we conduct numerical experiments on regression and classification problems involving sets, graphs, and sequences.
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- 2023
187. A New Initial Distribution for Quantum Generative Adversarial Networks to Load Probability Distributions
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Sano, Yuichi, Koga, Ryosuke, Abe, Masaya, and Nakagawa, Kei
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Quantum Physics - Abstract
Quantum computers are gaining attention for their ability to solve certain problems faster than classical computers, and one example is the quantum expectation estimation algorithm that accelerates the widely-used Monte Carlo method in fields such as finance. A previous study has shown that quantum generative adversarial networks(qGANs), a quantum circuit version of generative adversarial networks(GANs), can generate the probability distribution necessary for the quantum expectation estimation algorithm in shallow quantum circuits. However, a previous study has also suggested that the convergence speed and accuracy of the generated distribution can vary greatly depending on the initial distribution of qGANs' generator. In particular, the effectiveness of using a normal distribution as the initial distribution has been claimed, but it requires a deep quantum circuit, which may lose the advantage of qGANs. Therefore, in this study, we propose a novel method for generating an initial distribution that improves the learning efficiency of qGANs. Our method uses the classical process of label replacement to generate various probability distributions in shallow quantum circuits. We demonstrate that our proposed method can generate the log-normal distribution, which is pivotal in financial engineering, as well as the triangular distribution and the bimodal distribution, more efficiently than current methods. Additionally, we show that the initial distribution proposed in our research is related to the problem of determining the initial weights for qGANs., Comment: 14 pages, 5 figures, some typos were corrected
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- 2023
188. Integrative analysis of ATAC-seq and RNA-seq for cells infected by human T-cell leukemia virus type 1
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Tanaka, Azusa, Ishitsuka, Yasuhiro, Ohta, Hiroki, Takenouchi, Norihiro, Nakagawa, Masanori, Koh, Ki-Ryang, Onishi, Chiho, Tanaka, Hiromitsu, Fujimoto, Akihiro, Yasunaga, Jun-ichirou, and Matsuoka, Masao
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Quantitative Biology - Genomics ,Physics - Data Analysis, Statistics and Probability ,Quantitative Biology - Quantitative Methods - Abstract
Human T-cell leukemia virus type 1 (HTLV-1) causes adult T-cell leukemia (ATL) and HTLV-1-associated myelopathy (HAM) after a long latent period in a fraction of infected individuals. These HTLV-1-infected cells typically have phenotypes similar to that of CD4${^+}$ T cells, but the cell status is not well understood. To extract the inherent information of HTLV-1-infected CD4$^+$ cells, we integratively analyzed the ATAC-seq and RNA-seq data of infected cells. Compared to CD4${^+}$ T cells from healthy donors, we found anomalous chromatin accessibility in HTLV-1-infected CD4${^+}$ cells derived from ATL cases in terms of location and sample-to-sample fluctuations in open chromatin regions. Further, by focusing on systematically selected genes near the open chromatin regions, all the gene expressions in ATL cases were found to be distinct from those of healthy CD4$^+$ T cells. Based on a further analysis of chromatin accessibility, we detected TLL1 (Tolloid Like 1) as one of the key genes that exhibit unique gene expressions in ATL cases. A luciferase assay indicated that TLL1 has a strong regulatory effect on TGF-$\beta$. Overall, this study provides results about the status of HTLV-1 infected cells, which are qualitatively consistent across the different scales of chromatin accessibility, transcription, and immunophenotype., Comment: 23 pages, 13 figures
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- 2023
189. Anisotropy of upper critical fields and interface superconductivity in FeSe/SrTiO3 grown by PLD
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Kobayashi, Tomoki, Nakagawa, Hiroki, Ogawa, Hiroki, Nabeshima, Fuyuki, and Maeda, Atsutaka
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Condensed Matter - Superconductivity ,Condensed Matter - Strongly Correlated Electrons - Abstract
In this study, we grow FeSe/SrTiO$_{3}$ with thicknesses of 4-19 nm using pulsed laser deposition and investigate their magneto-transport properties. The thinnest film (4 nm) exhibit negative Hall effect, indicating electron transfer into FeSe from the SrTiO$_{3}$ substrate. This is in agreement with reports on ultrathin FeSe/SrTiO$_{3}$ grown by molecular beam epitaxy. The upper critical field is found to exhibit large anisotropy ($\gamma >$ 11.9), estimated from the data near the transition temperature ($T_{\mathrm{c}}$). In particular, the estimated coherence lengths in the perpendicular direction are 0.15-0.27 nm, which are smaller than the c-axis length of FeSe, and are found to be almost independent of the total thicknesses of the films. These results indicate that superconductivity is confined at the interface of FeSe/SrTiO$_{3}$., Comment: 5pages, 3figures
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- 2023
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190. A Large-Scale Pad-Sensor Based Prototype of the Silicon Tungsten Electromagnetic Calorimeter for the Forward Direction in ALICE at LHC
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Barthel, R. G. E., Chujo, T., Hachiya, T., Hatakeyama, M., Hoshi, Y., Inaba, M., Kawamura, Kawana, D., Loizides, C., Miake, Y., Minato, Y., Nakagawa, K., Novitzky, N., Peitzmann, T., Rossewij, M., Shimomura, M., Sugitate, T., Suzuki, T., Tadokoro, K., Takamura, M., Takasu, S., Brink, A. van den, and van Leeuwen, M.
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Physics - Instrumentation and Detectors - Abstract
We constructed a large-scale electromagnetic calorimeter prototype as a part of the Forward Calorimeter upgrade project (FoCal) for the ALICE experiment at the Large Hadron Collider (LHC). The prototype, also known as ``Mini FoCal'', consists of 20 layers of silicon pad sensors and tungsten alloy plates with printed circuit boards and readout electronics. The constructed detector was tested at the test beam facility of the Super Proton Synchrotron (SPS) at CERN. We obtain an energy resolution of about 4.3% for electron beams at both 150 and 250 GeV/$c$, which is consistent with realistic detector response simulations. Longitudinal profiles of electromagnetic shower were also measured and found to agree with the simulations. The same prototype detector was installed in the ALICE experimental area about 7.5m away from the interaction point. It was used to measure inclusive electromagnetic cluster energy distributions and neutral-pion candidate invariant mass distributions for pseudo-rapidity of $\eta$=3.7-4.5 in proton-proton collisions at $\sqrt{s}$ = 13 TeV at LHC. The measured distributions in different $\eta$ regions are similar to those obtained from PYTHIA simulations., Comment: 30 pages, 27 figures
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- 2023
191. Existence of density functions for SDEs driven by pure-jump processes
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Nakagawa, Takuya and Suzuki, Ryoichi
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Mathematics - Probability ,60H10 60G52 60H07 - Abstract
We verify the existence of density functions of the running maximum of a stochastic differential equation (SDE) driven by a Brownian motion and a non-truncated stable process. This is proved by the existence of density functions of the running maximum of Wiener-Poisson functionals resulting from Bismut's approach to Malliavin calculus for jump processes., Comment: 21 pages
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- 2023
192. O ciberacontecimento e as visualidades da precariedade
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Regiane Miranda de Oliveira Nakagawa, Ronaldo Cesar Henn, and Fábio Sadao Nakagawa
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ciberacontecimento ,visualidades da precariedade ,cidade ,gentrificação ,movimentos antidespejos ,Language and Literature ,Philology. Linguistics ,P1-1091 ,Communication. Mass media ,P87-96 - Abstract
Este artigo discute as manifestações antidespejos ocorridas no bairro Lavapiés, em Madri, com o intuito de compreender a correlação entre dois aspectos: a caracterização desses eventos como ciberacontecimentos, pelos quais irrompem novas formas de atuação da cidadania, e a emersão de uma nova esfera de aparecimento por meio das visualidades da precariedade. Tais ações buscam denunciar a gentrificação presente no local, a qual visa impor um campo de aparecimento que instaura a condição de precariedade das pessoas consideradas inadequadas. Com isso, busca-se explicitar de que maneira o ciberacontecimento agencia a constituição de visualidades urbanas da condição precária, de modo que existir e ter direitos implica, antes de tudo, aparecer.
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- 2024
193. Correction: The functional connectome in obsessive-compulsive disorder: resting-state mega-analysis and machine learning classification for the ENIGMA-OCD consortium
- Author
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Bruin, Willem B, Abe, Yoshinari, Alonso, Pino, Anticevic, Alan, Backhausen, Lea L, Balachander, Srinivas, Bargallo, Nuria, Batistuzzo, Marcelo C, Benedetti, Francesco, Bertolin Triquell, Sara, Brem, Silvia, Calesella, Federico, Couto, Beatriz, Denys, Damiaan AJP, Echevarria, Marco AN, Eng, Goi Khia, Ferreira, Sónia, Feusner, Jamie D, Grazioplene, Rachael G, Gruner, Patricia, Guo, Joyce Y, Hagen, Kristen, Hansen, Bjarne, Hirano, Yoshiyuki, Hoexter, Marcelo Q, Jahanshad, Neda, Jaspers-Fayer, Fern, Kasprzak, Selina, Kim, Minah, Koch, Kathrin, Bin Kwak, Yoo, Kwon, Jun Soo, Lazaro, Luisa, Li, Chiang-Shan R, Lochner, Christine, Marsh, Rachel, Martínez-Zalacaín, Ignacio, Menchon, Jose M, Moreira, Pedro S, Morgado, Pedro, Nakagawa, Akiko, Nakao, Tomohiro, Narayanaswamy, Janardhanan C, Nurmi, Erika L, Zorrilla, Jose C Pariente, Piacentini, John, Picó-Pérez, Maria, Piras, Fabrizio, Piras, Federica, Pittenger, Christopher, Reddy, Janardhan YC, Rodriguez-Manrique, Daniela, Sakai, Yuki, Shimizu, Eiji, Shivakumar, Venkataram, Simpson, Blair H, Soriano-Mas, Carles, Sousa, Nuno, Spalletta, Gianfranco, Stern, Emily R, Evelyn Stewart, S, Szeszko, Philip R, Tang, Jinsong, Thomopoulos, Sophia I, Thorsen, Anders L, Yoshida, Tokiko, Tomiyama, Hirofumi, Vai, Benedetta, Veer, Ilya M, Venkatasubramanian, Ganesan, Vetter, Nora C, Vriend, Chris, Walitza, Susanne, Waller, Lea, Wang, Zhen, Watanabe, Anri, Wolff, Nicole, Yun, Je-Yeon, Zhao, Qing, van Leeuwen, Wieke A, van Marle, Hein JF, van de Mortel, Laurens A, van der Straten, Anouk, van der Werf, Ysbrand D, Thompson, Paul M, Stein, Dan J, van den Heuvel, Odile A, and van Wingen, Guido A
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Biomedical and Clinical Sciences ,Biological Psychology ,Clinical and Health Psychology ,Clinical Sciences ,Psychology ,Machine Learning and Artificial Intelligence ,Mental Illness ,Serious Mental Illness ,Brain Disorders ,Anxiety Disorders ,Mental Health ,Good Health and Well Being ,ENIGMA-OCD Working Group ,Biological Sciences ,Medical and Health Sciences ,Psychology and Cognitive Sciences ,Psychiatry ,Clinical sciences ,Biological psychology ,Clinical and health psychology - Abstract
Correction to: Molecular Psychiatry, published online 2 May 2023 In this article Honami Arai, Irene Bollettini, Rosa Calvo Escalona, Ana Coelho, Federica Colombo, Leila Darwich, Martine Fontaine, Toshikazu Ikuta, Jonathan C. Ipser, Asier Juaneda-Seguí, Hitomi Kitagawa, Gerd Kvale, Mafalda Machado-Sousa, Astrid Morer, Takashi Nakamae, Jin Narumoto, Joseph O’Neill, Sho Okawa, Eva Real, Veit Roessner, Joao R. Sato, Cinto Segalàs, Roseli G. Shavitt, Dick J. Veltman, Kei Yamada were missing from the author list indexed under the ENIGMA-OCD Working Group. Additionally, there was an error regarding Tokiko Yoshida’s name, where the first name and last name were written in the wrong order. The original article has been corrected.
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- 2023
194. Using in-situ strain measurements to evaluate the accuracy of stress estimation procedures from fracture injection/shut-in tests
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Guglielmi, Yves, McClure, Mark, Burghardt, Jeffrey, Morris, Joseph P, Doe, Thomas, Fu, Pengcheng, Knox, Hunter, Vermeul, Vince, Kneafsey, Tim, Team, The EGS Collab, Ajo-Franklin, J, Baumgartner, T, Beckers, K, Blankenship, D, Bonneville, A, Boyd, L, Brown, S, Burghardt, JA, Chai, C, Chakravarty, A, Chen, T, Chen, Y, Chi, B, Condon, K, Cook, PJ, Crandall, D, Dobson, PF, Doe, T, Doughty, CA, Elsworth, D, Feldman, J, Feng, Z, Foris, A, Frash, LP, Frone, Z, Fu, P, Gao, K, Ghassemi, A, Guglielmi, Y, Haimson, B, Hawkins, A, Heise, J, Hopp, C, Horn, M, Horne, RN, Horner, J, Hu, M, Huang, H, Huang, L, Im, KJ, Ingraham, M, Jafarov, E, Jayne, RS, Johnson, TC, Johnson, SE, Johnston, B, Karra, S, Kim, K, King, DK, Kneafsey, T, Knox, H, Knox, J, Kumar, D, Kutun, K, Lee, M, Li, D, Li, J, Li, K, Li, Z, Maceira, M, Mackey, P, Makedonska, N, Marone, CJ, Mattson, E, McClure, MW, McLennan, J, McLing, T, Medler, C, Mellors, RJ, Metcalfe, E, Miskimins, J, Moore, J, Morency, CE, Morris, JP, Myers, T, Nakagawa, S, Neupane, G, Newman, G, Nieto, A, Paronish, T, Pawar, R, Petrov, P, Pietzyk, B, Podgorney, R, Polsky, Y, Pope, J, Porse, S, Primo, JC, Pyatina, T, and Reimers, C
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Engineering ,Resources Engineering and Extractive Metallurgy ,Bioengineering ,DFIT ,Minifrac ,SIMFIP ,Collab ,Civil Engineering ,Mining & Metallurgy ,Civil engineering ,Resources engineering and extractive metallurgy - Abstract
Fracture injection/shut-in tests are commonly used to measure the state of stress in the subsurface. Injection creates a hydraulic fracture (or in some cases, opens a preexisting fracture), and then the pressure after shut-in is monitored to identify fracture closure. Different interpretation procedures have been proposed for estimating closure, and the procedures sometimes yield significantly different results. In this study, direct, in-situ strain measurements are used to observe fracture reopening and closure. The tests were performed as part of the EGS Collab project, a mesoscale project performed at 1.25 and 1.5 km depth at the Sanford Underground Research Facility. The tests were instrumented with the SIMFIP tool, a double-packer probe with a high-resolution three-dimensional borehole displacement sensor. The measurements provide a direct observation of the fracture closure signature, enabling a high-fidelity estimate of the fracture closure stress (ie, the normal stress on the fracture). In two of the four tests, injection created an opening mode fracture, and so the closure stress can be interpreted as the minimum principal stress. In the other two tests, injection probably opened preexisting natural fractures, and so the closure stress can be interpreted as the normal stress on the fractures. The strain measurements are compared against different proposed methods for estimating closure stress from pressure transients. The shut-in transients are analyzed with two techniques that are widely used in the field of petroleum engineering – the ‘tangent’ method and the ‘compliance’ method. In three of the four tests, the tangent method significantly underestimates the closure stress. The compliance method is reasonably accurate in all four tests. Closure stress is also interpreted using two other commonly-used methods – ‘first deviation from linearity’ and the method of (Hayashi and Haimson, 1991). In comparison with the SIMFIP data, these methods tend to overestimate the closure stress, evidently because they identify closure from early-time transient effects, such as near-wellbore tortuosity. In two of the tests, microseismic imaging provides an independent estimate of the size of the fracture created by injection. When combined with a simple mass balance calculation, the SIMFIP stress measurements yield predictions of fracture size that are reasonably consistent with the estimates from microseismic. The calculations imply an apparent fracture toughness 2-3x higher than typical laboratory-derived values.
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- 2023
195. The functional connectome in obsessive-compulsive disorder: resting-state mega-analysis and machine learning classification for the ENIGMA-OCD consortium.
- Author
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Bruin, Willem, Abe, Yoshinari, Alonso, Pino, Anticevic, Alan, Backhausen, Lea, Balachander, Srinivas, Bargallo, Nuria, Batistuzzo, Marcelo, Benedetti, Francesco, Bertolin Triquell, Sara, Brem, Silvia, Calesella, Federico, Couto, Beatriz, Denys, Damiaan, Echevarria, Marco, Eng, Goi, Ferreira, Sónia, Feusner, Jamie, Grazioplene, Rachael, Gruner, Patricia, Guo, Joyce, Hagen, Kristen, Hansen, Bjarne, Hirano, Yoshiyuki, Hoexter, Marcelo, Jahanshad, Neda, Jaspers-Fayer, Fern, Kasprzak, Selina, Kim, Minah, Koch, Kathrin, Bin Kwak, Yoo, Kwon, Jun, Lazaro, Luisa, Li, Chiang-Shan, Lochner, Christine, Marsh, Rachel, Martínez-Zalacaín, Ignacio, Menchon, Jose, Moreira, Pedro, Morgado, Pedro, Nakagawa, Akiko, Nakao, Tomohiro, Narayanaswamy, Janardhanan, Nurmi, Erika, Zorrilla, Jose, Picó-Pérez, Maria, Piras, Fabrizio, Piras, Federica, Pittenger, Christopher, Reddy, Janardhan, Rodriguez-Manrique, Daniela, Sakai, Yuki, Shimizu, Eiji, Shivakumar, Venkataram, Simpson, Blair, Soriano-Mas, Carles, Sousa, Nuno, Spalletta, Gianfranco, Stern, Emily, Evelyn Stewart, S, Szeszko, Philip, Tang, Jinsong, Thomopoulos, Sophia, Thorsen, Anders, Yoshida, Tokiko, Tomiyama, Hirofumi, Vai, Benedetta, Veer, Ilya, Venkatasubramanian, Ganesan, Vetter, Nora, Vriend, Chris, Walitza, Susanne, Waller, Lea, Wang, Zhen, Watanabe, Anri, Wolff, Nicole, Yun, Je-Yeon, Zhao, Qing, van Leeuwen, Wieke, van Marle, Hein, van de Mortel, Laurens, van der Straten, Anouk, van der Werf, Ysbrand, Thompson, Paul, Stein, Dan, van den Heuvel, Odile, van Wingen, Guido, and Piacentini, John
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Humans ,Connectome ,Brain Mapping ,Magnetic Resonance Imaging ,Brain ,Obsessive-Compulsive Disorder ,Biomarkers ,Neural Pathways - Abstract
Current knowledge about functional connectivity in obsessive-compulsive disorder (OCD) is based on small-scale studies, limiting the generalizability of results. Moreover, the majority of studies have focused only on predefined regions or functional networks rather than connectivity throughout the entire brain. Here, we investigated differences in resting-state functional connectivity between OCD patients and healthy controls (HC) using mega-analysis of data from 1024 OCD patients and 1028 HC from 28 independent samples of the ENIGMA-OCD consortium. We assessed group differences in whole-brain functional connectivity at both the regional and network level, and investigated whether functional connectivity could serve as biomarker to identify patient status at the individual level using machine learning analysis. The mega-analyses revealed widespread abnormalities in functional connectivity in OCD, with global hypo-connectivity (Cohens d: -0.27 to -0.13) and few hyper-connections, mainly with the thalamus (Cohens d: 0.19 to 0.22). Most hypo-connections were located within the sensorimotor network and no fronto-striatal abnormalities were found. Overall, classification performances were poor, with area-under-the-receiver-operating-characteristic curve (AUC) scores ranging between 0.567 and 0.673, with better classification for medicated (AUC = 0.702) than unmedicated (AUC = 0.608) patients versus healthy controls. These findings provide partial support for existing pathophysiological models of OCD and highlight the important role of the sensorimotor network in OCD. However, resting-state connectivity does not so far provide an accurate biomarker for identifying patients at the individual level.
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- 2023
196. Distinct mechanisms for sebaceous gland self-renewal and regeneration provide durability in response to injury.
- Author
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Veniaminova, Natalia, Jia, Yunlong, Hartigan, Adrien, Huyge, Thomas, Tsai, Shih-Ying, Grachtchouk, Marina, Nakagawa, Seitaro, Dlugosz, Andrzej, Wong, Sunny, and Atwood, Scott
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CP: Stem cell research ,Hair follicle stem cells ,K79 ,Krt79 ,Pparg ,epithelial ,infundibulum ,sebocyte ,skin biology ,wound healing ,Sebaceous Glands ,Cell Differentiation ,Skin ,Hair Follicle ,Epithelial Cells - Abstract
Sebaceous glands (SGs) release oils that protect our skin, but how these glands respond to injury has not been previously examined. Here, we report that SGs are largely self-renewed by dedicated stem cell pools during homeostasis. Using targeted single-cell RNA sequencing, we uncovered both direct and indirect paths by which resident SG progenitors ordinarily differentiate into sebocytes, including transit through a Krt5+PPARγ+ transitional basal cell state. Upon skin injury, however, SG progenitors depart their niche, reepithelialize the wound, and are replaced by hair-follicle-derived stem cells. Furthermore, following targeted genetic ablation of >99% of SGs from dorsal skin, these glands unexpectedly regenerate within weeks. This regenerative process is mediated by alternative stem cells originating from the hair follicle bulge, is dependent upon FGFR2 signaling, and can be accelerated by inducing hair growth. Altogether, our studies demonstrate that stem cell plasticity promotes SG durability following injury.
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- 2023
197. Modified and Extended Inspection Models
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Mizutani, Satoshi, Chen, Mingchih, Nakagawa, Toshio, Pham, Hoang, Series Editor, Nakamura, Syouji, editor, Sawaki, Katsushige, editor, and Nakagawa, Toshio, editor
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- 2024
- Full Text
- View/download PDF
198. Strategy and belief for successful family budget management: A case study of family account books for over 50 years
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Nakagawa, Hideko and Shigekawa, Junko
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- 2024
199. Scanning electron microscopy analysis of synovial and adipose mesenchymal stem cells adhering to cartilage
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Yusuke Fuchioka, Kentaro Endo, Yuriko Sakamaki, Takahiro Tanimoto, Nobutake Ozeki, Yusuke Nakagawa, Hideyuki Koga, Makoto Tomita, and Ichiro Sekiya
- Subjects
Mesenchymal stem cell ,Synovium ,Adipose tissue ,Knee ,Osteoarthritis ,Scanning electron microscopy ,Medicine (General) ,R5-920 ,Cytology ,QH573-671 - Abstract
Introduction: Mesenchymal stem cells (MSCs) are increasingly used for intra-articular injections in the treatment of knee osteoarthritis. The aim of this study was to use scanning electron microscopy (SEM) to compare the morphological characteristics of synovial and adipose MSCs. Methods: Synovium and adipose tissues were concurrently harvested from eight patients with knee osteoarthritis. Suspensions of both synovial and adipose MSCs were examined to identify the presence of microspikes. In addition to this study, the MSC suspensions in four patients were applied to abraded porcine cartilage discs and observed 10 s, 10 min, and 1 h later. Results: The median percentage of cells exhibiting microspikes was 14% for synovial MSC suspensions and 13% for adipose MSC suspensions; this difference was not statistically significant (n = 8). No notable differences were detected in the number of adherent cells or in the proportion of cells displaying microspikes or pseudopodia. Strong correlations were found between the proportion of cells with pseudopodia and the number of attached cells for both synovial (r = 0.92, n = 12) and adipose (r = 0.86, n = 12) MSCs, with no significant difference in the correlation coefficients between the two groups. Conclusion: SEM analysis revealed no obvious differences in morphological characteristics during MSC adhesion to cartilage for either synovial or adipose MSCs.
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- 2024
- Full Text
- View/download PDF
200. Hypoxia-related Y RNA fragments as a novel potential biomarker for distinguishing metastatic oral melanoma from non-metastatic oral melanoma in dogs
- Author
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MD Nazmul Hasan, MD Mahfuzur Rahman, Al Asmaul Husna, Daiki Kato, Takayuki Nakagawa, Mohammad Arif, and Naoki Miura
- Subjects
Hypoxia ,Y RNA ,dog ,melanoma ,next-generation sequencing ,Veterinary medicine ,SF600-1100 - Abstract
AbstractHypoxia may promote tumor progression, and hypoxically altered noncoding RNA (ncRNA) expression may play a role in metastasis. Canine oral melanoma (COM) frequently metastasizes, and ncRNA expression under hypoxia may be clinically significant. We aimed to elucidate ncRNA fragments whose expression is altered by hypoxia in COM-derived primary KMeC and metastatic LMeC cell lines using next-generation sequencing to validate these results in qRT-PCR, and then compare expression between metastatic and non-metastatic COM. The NGS analysis and subsequent qRT-PCR validation were performed using hypoxic and normoxic KMeC and LMeC cells, and clinical samples [tumor tissue, plasma, and plasma-derived extracellular vesicles] obtained from dogs with metastatic or non-metastatic melanoma were analyzed with qRT-PCR. Y RNA was significantly decreased in metastatic LMeC cells versus primary KMeC cells in hypoxic and normoxic conditions. The expression of Y RNA was decreased in dogs with metastatic melanoma versus those with non-metastatic melanoma for all clinical sample types, reflecting the pattern found with hypoxia. Receiver operating characteristic analysis demonstrated that Y RNA level is a promising biomarker for discriminating metastatic from non-metastatic melanoma in plasma [area under the curve (AUC) = 0.993, p
- Published
- 2024
- Full Text
- View/download PDF
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