370 results on '"McLean, Kyle"'
Search Results
152. Robust scenario formulations for strategic supply chain optimization under uncertainty
- Author
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McLean, Kyle
- Subjects
Robust Scenario Formulation ,Scenario Formulation ,Uncertainty ,Stochastic programming ,Supply Chain Optimization ,Robust optimization - Abstract
Strategic supply chain optimization (SCO) problems are often modelled as a two-stage optimization problem, in which the first-stage variables represent decisions on the development of the supply chain and the second-stage variables represent decisions on the operations of the supply chain. When uncertainty is explicitly considered, the problem becomes an intractable infinite-dimensional optimization problem, which is usually solved approximately via a scenario or a robust approach. This paper proposes a novel synergy of the scenario and robust approaches for strategic SCO under uncertainty. Two formulations are developed, namely, naïve robust scenario formulation and affinely adjustable robust scenario formulation. It is shown that both formulations can be reformulated into tractable deterministic optimization problems if the uncertainty is bounded with the infinity-norm, and the uncertain equality constraints can be reformulated into deterministic constraints without assumption of the uncertainty region. Case studies of a classical farm planning problem and an energy and bioproduct SCO problem demonstrate the advantages of the proposed formulations over the classical scenario formulation. The proposed formulations not only can generate solutions with guaranteed feasibility or indicate infeasibility of a problem, but also can achieve optimal expected economic performance with smaller numbers of scenarios.
- Published
- 2013
153. Maternal nutrition and embryonic survivial: nutrient transporters in bovine utero-placental tissues on days 16 to 50 of gestation
- Author
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Crouse, Matthew S., McLean, Kyle J., Reynolds, Larry P., Dahlen, Carl R., Neville, Brian W., Borowicz, Pawel P., and Caton, Joel S.
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Embryonic development -- Health aspects ,Cattle -- Health aspects ,Pregnancy -- Health aspects ,Science and technology - Abstract
To meet the projected food requirements of the growing population, the world needs to significantly increase its output of meats by 2050 (4). Currently, fertilization rates for first service AI [...]
- Published
- 2015
154. Ethnic Identity, Procedural Justice, and Offending: Does Procedural Justice Work the Same for Everyone?
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McLean, Kyle, primary
- Published
- 2015
- Full Text
- View/download PDF
155. Who Is the Rotten Apple? Mock Jurors’ Views of Teacher–Student Sexual Contact
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Anderson, Alissa, primary, Wingrove, Twila, additional, Fox, Paul, additional, McLean, Kyle, additional, and Styer, Erin, additional
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- 2015
- Full Text
- View/download PDF
156. A Sense of Injustice Loosens the Moral Bind of Law
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McLean, Kyle, primary and Wolfe, Scott E., additional
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- 2015
- Full Text
- View/download PDF
157. Novel formulation and efficient solution strategy for strategic optimization of an industrial chemical supply chain under demand uncertainty
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McLean, Kyle, primary, Ogbe, Emmanuel, additional, and Li, Xiang, additional
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- 2015
- Full Text
- View/download PDF
158. Large volume, optical and opto-mechanical metrology techniques for ISIM on JWST
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Hadjimichael, Theodore J., primary, Gum, Jeffrey S., additional, Madison, Timothy J., additional, Ohl, Raymond G., additional, Hayden, Joseph E., additional, Mclean, Kyle F., additional, Young, Jerrod, additional, Coulter, Philip, additional, Hylan, Jason E., additional, Miner, Linda, additional, Redman, Kevin, additional, Wenzel, Greg W., additional, and Khreishi, Manal, additional
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- 2015
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159. Procedural Injustice, Risky Lifestyles, and Violent Victimization.
- Author
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Wolfe, Scott E. and McLean, Kyle
- Subjects
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PROCEDURAL justice , *CRIME victims , *VIOLENT crimes , *SOCIAL participation , *SOCIAL control - Abstract
Participation in risky lifestyles is a well-established predictor of victimization. Several variables have been identified as key predictors of risky activities (e.g., low self-control) but there may be additional sources not considered in the literature to date. We argue that perceptions of procedural unfairness represent a break in social control, thereby opening the door for participation in risky lifestyles that are conducive to victimization. Using three waves of data from the Gang Resistance Education and Training (GREAT) program, we demonstrated that police procedural injustice was positively associated with risky lifestyles, which partially mediated the relationship between procedural injustice and violent victimization. This study advances the literature by demonstrating that our understanding of victimization is enhanced by including procedural injustice into its explanation. [ABSTRACT FROM AUTHOR]
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- 2017
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- View/download PDF
160. Isoprenoid Precursor Biosynthesis Is the Essential Metabolic Role of the Apicoplast during Gametocytogenesis in Plasmodium falciparum
- Author
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Wiley, Jessica D., primary, Merino, Emilio F., additional, Krai, Priscilla M., additional, McLean, Kyle J., additional, Tripathi, Abhai K., additional, Vega-Rodríguez, Joel, additional, Jacobs-Lorena, Marcelo, additional, Klemba, Michael, additional, and Cassera, Maria B., additional
- Published
- 2015
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161. Chemical and biotic characteristics of prairie lakes and large wetlands in south-central North Dakota—Effects of a changing climate
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Mushet, David M., primary, Goldhaber, Martin B., additional, Mills, Christopher T., additional, McLean, Kyle I., additional, Aparicio, Vanessa M., additional, McCleskey, R. Blaine, additional, Holloway, JoAnn M., additional, and Stockwell, Craig A., additional
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- 2015
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162. Ambient optomechanical alignment and pupil metrology for the flight instruments aboard the James Webb Space Telescope
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Coulter, Phillip, additional, Beaton, Alexander, additional, Gum, Jeffery S., additional, Hadjimichael, Theodore J., additional, Hayden, Joseph E., additional, Hummel, Susann, additional, Hylan, Jason E., additional, Lee, David, additional, Madison, Timothy J., additional, Maszkiewicz, Michael, additional, Mclean, Kyle F., additional, McMann, Joseph, additional, Melf, Markus, additional, Miner, Linda, additional, Ohl, Raymond G., additional, Redman, Kevin, additional, Roedel, Andreas, additional, Schweiger, Paul, additional, Te Plate, Maurice, additional, Wells, Martyn, additional, Wenzel, Greg W., additional, Williams, Patrick K., additional, and Young, Jerrod, additional
- Published
- 2014
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163. Optical alignment of the Global Precipitation Measurements (GPM) star trackers
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Hetherington, Samuel, primary, Osgood, Dean, additional, McMann, Joe, additional, Roberts, Viki, additional, Gill, James, additional, and McLean, Kyle, additional
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- 2013
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164. Robust Scenario Formulations for Strategic Supply Chain Optimization under Uncertainty
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McLean, Kyle, primary and Li, Xiang, additional
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- 2013
- Full Text
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165. Clinal Patterns in Genetic Variation for Northern Leopard Frog ( Rana pipiens): Conservation Status and Population Histories.
- Author
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Fisher, Justin, Stockwell, Craig, and McLean, Kyle
- Abstract
The security of the northern leopard frog ( Rana pipiens) varies spatially with populations east and west of North Dakota considered as secure and at risk, respectively. We used genetic markers to characterize the conservation status of northern leopard frog populations across North Dakota. We used multiple regression analyses and model selection to evaluate correlations of expected heterozygosity ( H ) with the direct and additive effects of: i) geographic location, ii) wetland density and iii) average annual precipitation. There was lower genetic diversity in the western portion of the state due to lower levels of diversity for populations southwest of the Missouri River. This may reflect a refugial/colonization signature for the only non-glaciated area of North Dakota. Genetic diversity was also positively associated with wetland densities which is consistent with the reliance of this species on a mosaic of wetlands. Our findings suggest that populations in the southwestern part of North Dakota are of higher conservation concern, a finding consistent with the higher risk noted for northern leopard frog populations in most states west of North Dakota. Our findings also pose the hypothesis that climate change induced changes in wetland densities will reduce genetic diversity of northern leopard frog populations. [ABSTRACT FROM AUTHOR]
- Published
- 2016
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166. Rape Myth & Homophobic Attitudes, Culpability & Legal Decisions in Teacher-Student Sexual Abuse Cases
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Anderson, Alissa Zoe, primary, Wingrove, Twila, additional, Fagge, Erin, additional, McLean, Kyle, additional, and Fox, Paul, additional
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- 2013
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167. Amelioration of coal Fly Ash (FY) based plant growth media by using Sphagnum Peat Moss (SPM)
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Dissette, Nadine, McLean, Kyle, McLean, Erin, Soumaila, Fakira, Kyei-Asare, Felix, Ilogu, Chinedu, and Bilski, Jerzy
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Peat ,Soil amendments ,Company growth ,Science and technology - Abstract
Besides the use of coal FA for construction purposes, soil amendments are the most extensively studied reutilization option (1). Several studies have shown the usefulness of FA as a soil [...]
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- 2010
168. Revegetation of coal fly ash(FA) by selected cereal crops
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McLean, Kyle, McLean, Erin, Lander, Mardee, and Bilski, Jerzy
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Agricultural industry ,Revegetation ,Heavy metals ,Science and technology - Abstract
A vegetative cover is a remedial technique utilized on coal FA landfills for soil stabilization and for the physical and chemical immobilization of contaminants (1, 2, 3, 4). Many herbaceous [...]
- Published
- 2010
169. Metrology for trending alignment of the James Webb Space Telescope before and after ambient environmental testing
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Sasián, José, Youngworth, Richard N., Hadjimichael, Theo, Ohl, Raymond G., Berrier, Josh, Gum, Jeff, Hayden, Joseph, Khreishi, Manal, McLean, Kyle, Redman, Kevin, Sullivan, Joseph, Wenzel, Greg, Eichhorn, William, and Young, Jerrod
- Published
- 2017
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170. Alignment and testing of critical interface fixtures for the James Webb Space Telescope
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Sasián, José, Youngworth, Richard N., McLean, Kyle, Bagdanove, Paul, Berrier, Joshua, Cofie, Emmanuel, Glassman, Tiffany, Hadjimichael, Theodore, Johnson, Eric, Levi, Joshua, Lo, Amy, McMann, Joseph, Ohl, Raymond, Osgood, Dean, Parker, James, Redman, Kevin, Roberts, Vicki, Stephens, Matthew, Sutton, Adam, Wenzel, Greg, and Young, Jerrod
- Published
- 2017
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171. Engineered Anopheles Immunity to Plasmodium Infection
- Author
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Dong, Yuemei, primary, Das, Suchismita, additional, Cirimotich, Chris, additional, Souza-Neto, Jayme A., additional, McLean, Kyle J., additional, and Dimopoulos, George, additional
- Published
- 2011
- Full Text
- View/download PDF
172. A Sense of Injustice Loosens the Moral Bind of Law.
- Author
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McLean, Kyle and Wolfe, Scott E.
- Subjects
PROCEDURAL justice ,CRIMINAL behavior ,RECIDIVISM ,PRISONER attitudes ,CRIME prevention - Abstract
Existing literature demonstrates a clear connection between perceptions of procedural injustice and offending behaviors. Despite this connection, the mechanisms through which procedural injustice influences offending remain theoretically underdeveloped. To address this gap, the current study proposes that techniques of neutralization can be used to further develop our understanding of the connection between procedural injustice and criminal behavior. Using longitudinal data from the Gang Resistance Education and Training (GREAT) program, the links between procedural injustice, techniques of neutralization, and offending are explored. Results show that the effect of procedural injustice on offending is partially mediated by individuals’ neutralization attitudes. This finding expands the scope of procedural justice theory by demonstrating that procedural injustice is associated with attitudes conducive to criminal behavior rather than only the behavior itself. [ABSTRACT FROM AUTHOR]
- Published
- 2016
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- View/download PDF
173. Alignment of the James Webb Space Telescope Integrated Science Instrument Module Element
- Author
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Sasián, José, Youngworth, Richard N., Hadjimichael, Theo, Ohl, Raymond G., Antonille, Scott, Aronstein, David L., Bartoszyk, Andrew, Berrier, Josh, Cofie, Emmanuel, Coulter, Phil, Gracey, Renee, Hayden, Joseph, Howard, Joseph, Hylan, Jason, Kubalak, David, McLean, Kyle, Miskey, Cherie, Redman, Kevin, Rohrbach, Scott, Sabatke, Derek, Telfer, Randal, Wenzel, Greg, Zielinski, Thomas, Sullivan, Joseph, Hartig, George, and Eichhorn, William
- Published
- 2016
- Full Text
- View/download PDF
174. Concentrations of vitamin B12and folate in maternal serum and fetal fluids, metabolite interrelationships, and hepatic transcript abundance of key folate and methionine cycle genes: the impacts of maternal nutrition during the first 50 d of gestation
- Author
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Syring, Jessica G, Crouse, Matthew S, Neville, Tammi L, Ward, Alison K, Dahlen, Carl R, Reynolds, Lawrence P, Borowicz, Pawel P, McLean, Kyle J, Neville, Bryan W, and Caton, Joel S
- Abstract
Adequate maternal nutrition is key for proper fetal development and epigenetic programming. One-carbon metabolites (OCM), including vitamin B12, folate, choline, and methionine, play a role in epigenetic mechanisms associated with developmental programming. This study investigated the presence of B12and folate in maternal serum, allantoic fluid (ALF), and amniotic fluid (AMF), as well as how those concentrations in all three fluids correlate to the concentrations of methionine–folate cycle intermediates in heifers receiving either a control (CON) or restricted (RES) diet for the first 50 d of gestation and fetal hepatic gene expression for methionine–folate cycle enzymes. Angus cross heifers (n= 43) were estrus synchronized, bred via artificial insemination with semen from a single sire, and randomly assigned to one of two nutrition treatments (CON = 20, RES = 23). Heifers were ovariohysterectomized on either day 16 (n= 14), 34 (n= 15), or 50 of gestation (n= 14), where samples of maternal serum (n= 42), ALF (n= 29), and AMF (n= 11) were collected and analyzed for concentrations of folate and B12. Concentrations of B12and folate in ALF were greater (P< 0.05) in RES compared to CON. For ALF, folate concentrations were also greater (P< 0.01) on day 34 compared to day 50. There was a significant (P= 0.04) nutrition × fluid interaction for B12concentrations where concentrations were greatest in restricted ALF, intermediate in control ALF, and lowest in CON and RES serum and AMF. Folate concentrations were greatest (P< 0.01) in ALF, intermediate in serum, and lowest in AMF. Additionally, positive correlations (P< 0.05) were found between ALF and AMF folate concentrations and AMF concentrations of methionine, serine, and glycine. Negative correlations (P< 0.05) between AMF folate and serum homocysteine were also observed. Both positive and negative correlations (P< 0.05) depending on the fluid evaluated were found between B12and methionine, serine, and glycine concentrations. There was a downregulation (P = 0.05) of dihydrofolate reductaseand upregulation (P= 0.03) of arginine methyltransferase 7gene expression in RES fetal liver samples compared with CON fetal liver on day 50. Combined, these data show restricted maternal nutrition results in increased B12and folate concentrations present in fetal fluids, and increased expression of genes for enzymes within one-carbon metabolism.This study found a restricted maternal diet increased B12and folate concentrations in allantoic fluid, impacted correlations between B12, folate, and other metabolites in the one-carbon metabolism pathway, and altered expression of the genes dihydrofolate reductaseand arginine methyltransferase 7in fetal liver at day 50 of gestation. These findings further our understanding on the impacts of restricted maternal nutrition on key factors in fetal programming and provide the next step in developing a strategic supplementation plan for times of limiting nutrition in beef cattle.When pregnant cattle have restricted access to feed or specific nutrients, calf development can be affected, and the degree of impairment depends, at least partially, on timing, duration, and severity of the limitations. A biochemical pathway present in cells that can be affected by limited nutrition is one-carbon metabolism. This pathway is related to epigenetics, which regulates gene expression or the turning on and off of genes. Two important vitamins in one-carbon metabolism are vitamins B12and folate. By understanding the amounts of those vitamins available to the developing calf, we can gain better insight into the regulation and potential avenues of improvement of calf growth and development.In this study, we found a nutrient restricted maternal diet increased the amount of B12and folate in calf allantoic and amniotic fluids. We also found that folate and B12were correlated to the presence of other nutrients in serum, allantoic fluid, and amniotic fluid. In addition, we found that a protein methylating gene in one-carbon metabolism had increased expression in calves from heifers receiving limited nutrition. This study is an important step in understanding how the nutrients available to a pregnant heifer during gestation affects nutrients available to the conceptus.
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- 2023
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175. Genetic Investigation of Tricarboxylic Acid Metabolism during the Plasmodium falciparumLife Cycle
- Author
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Ke, Hangjun, Lewis, Ian A., Morrisey, Joanne M., McLean, Kyle J., Ganesan, Suresh M., Painter, Heather J., Mather, Michael W., Jacobs-Lorena, Marcelo, Llinás, Manuel, and Vaidya, Akhil B.
- Abstract
New antimalarial drugs are urgently needed to control drug-resistant forms of the malaria parasite Plasmodium falciparum. Mitochondrial electron transport is the target of both existing and new antimalarials. Herein, we describe 11 genetic knockout (KO) lines that delete six of the eight mitochondrial tricarboxylic acid (TCA) cycle enzymes. Although all TCA KOs grew normally in asexual blood stages, these metabolic deficiencies halted life-cycle progression in later stages. Specifically, aconitase KO parasites arrested as late gametocytes, whereas α-ketoglutarate-dehydrogenase-deficient parasites failed to develop oocysts in the mosquitoes. Mass spectrometry analysis of 13C-isotope-labeled TCA mutant parasites showed that P. falciparumhas significant flexibility in TCA metabolism. This flexibility manifested itself through changes in pathway fluxes and through altered exchange of substrates between cytosolic and mitochondrial pools. Our findings suggest that mitochondrial metabolic plasticity is essential for parasite development.
- Published
- 2015
- Full Text
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176. RobustScenario Formulations for Strategic SupplyChain Optimization under Uncertainty.
- Author
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McLean, Kyle and Li, Xiang
- Subjects
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SUPPLY chains , *MATHEMATICAL optimization , *CASE studies , *SUPPLY & demand , *BIOLOGICAL products , *INDUSTRIAL procurement , *ROBUST optimization , *DETERMINISTIC algorithms - Abstract
Strategicsupply chain optimization (SCO) problems are often modeledas two-stage optimization problems, in which the first-stage variablesrepresent decisions on the development of the supply chain and thesecond-stage variables represent decisions on the operations of thesupply chain. When uncertainty is explicitly considered, the problembecomes an intractable infinite-dimensional optimization problem,which is usually solved approximately using a scenario or a robustapproach. This article proposes a novel synergy of the scenario androbust approaches for strategic SCO under uncertainty. Two formulationsare developed, namely, naïve robust scenario formulation andaffinely adjustable robust scenario formulation. It is shown thatboth formulations can be reformulated into tractable deterministicoptimization problems if the uncertainty is bounded by the infinitynorm and the uncertain equality constraints can be reformulated intodeterministic constraints without any assumption about the uncertaintyregion. Case studies of a classical farm planning problem and an energyand bioproduct SCO problem demonstrate the advantages of the proposedformulations over the classical scenario formulation. The proposedformulations not only can generate solutions with guaranteed feasibilityor indicate infeasibility of a problem, but also can achieve optimalexpected economic performance with smaller numbers of scenarios. [ABSTRACT FROM AUTHOR]
- Published
- 2013
- Full Text
- View/download PDF
177. Engineered Anopheles Immunity to Plasmodium Infection.
- Author
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Yuemei Dong, Suchismita Das, Cirimotich, Chris, Souza-Neto, Jayme A., McLean, Kyle J., and Dimopoulos, George
- Abstract
A causative agent of human malaria, Plasmodium falciparum, is transmitted by Anopheles mosquitoes. The malaria parasite is under intensive attack from the mosquito's innate immune system during its sporogonic development. We have used genetic engineering to create immune-enhanced Anopheles stephensi mosquitoes through blood meal-inducible expression of a transgene encoding the IMD pathway-controlled NF-kB Rel2 transcription factor in the midgut and fat-body tissue. Transgenic mosquitoes showed greater resistance to Plasmodium and microbial infection as a result of timely concerted tissue-specific immune attacks involving multiple effectors. The relatively weak impact of this genetic modification on mosquito fitness under laboratory conditions encourages further investigation of this approach for malaria control. [ABSTRACT FROM AUTHOR]
- Published
- 2011
- Full Text
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178. 32 Bacterial Communities in the Uterus and Rumen of Beef Heifers Throughout Development with Protein Supplementation.
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Ault-Seay, Taylor B, Brandt, Kiernan, Henniger, Madison T, Mathew, Daniel, Moorey, Sarah, Schrick, F Neal, Pohler, Ky G, Rhinehart, Justin D, Schneider, Liesel G, McLean, Kyle J, and Myer, Phillip R
- Subjects
BACTERIAL communities ,HEIFERS ,UTERUS ,DIETARY supplements ,BACTERIAL DNA ,COMMUNITIES - Abstract
Protein supplementation to replacement heifers is utilized to reach targeted body weights, which may affect the animal's gut and reproductive microbiomes and potentially impact breeding outcomes. The objective of the study was to evaluate the effects of protein supplementation on the ruminal and uterine bacterial communities of developing heifers. Thirty-nine pre-pubertal commercial Angus heifers were blocked by body weight (BW) and randomly assigned to one of three supplementation groups: 10% crude protein (CP), 20% CP, or 40% CP. Supplements were provided four times weekly for 140d. Blood and BW were taken every 14d to monitor development. Every 56d, uterine flushes and rumen content were collected for bacterial identification. Uterine flushes were collected via 20 mL sterile saline flushed through a Foley catheter, and rumen content by esophageal tubing. Bacterial DNA was extracted and amplified targeting the V1-V3 region of the 16S rRNA gene. Microbiome analyses were performed in R 4.1 with dada2 and phyloseq packages. Statistical analyses were performed in R and SAS 9.4. The GLIMMIX procedure was used including fixed effects of protein, month, and pubertal status. Random effects included BW, interaction of BW and protein, and heifer within the interaction, with repeated measures of month. Alpha diversity differed by month in the rumen, and by month and pubertal status in the uterus (P < 0.05). Bray Curtis analyses indicated clustering by month and pubertal status (P < 0.001) in the uterus, and by month in the rumen (P < 0.001). Multiple uterine and ruminal bacteria abundances differed over time and by protein supplementation and pubertal status (P < 0.05). The impact of pubertal status and month of development may indicate maturation of the uterine bacterial communities through development. Protein supplementation affecting the uterine bacterial communities may provide opportunity to manipulate the uterine microbiome, potentially affecting future reproductive success. [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
- View/download PDF
179. Changes in Interferon-γ and Tumor necrosis factor-α in the vaginal environment of cattle during early gestation.
- Author
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Utai, Makala L., Leach, Mary A., and McLean, Kyle J.
- Subjects
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PREGNANCY outcomes , *URINARY catheters , *ARTIFICIAL insemination , *DAIRY cattle , *IMMUNE response , *CHEMOKINE receptors - Abstract
The embryo must create an immunotolerant uterine environment via cytokine signaling to prevent rejection and facilitate embryo attachment. Cytokines have a variety of roles in both reproductive and pregnancy-related processes. Cytokines and chemokines are important in inflammatory pathways for uterine remodeling and recruitment of immune cells during pregnancy. Interferon-γ (INFγ) and tumor necrosis factor-a (TNFα) influence T-helper cell immune responses, which can assist in early pregnancy establishment. Therefore, we hypothesized that INFγ and TNFα concentrations following breeding will be differentially expressed based on mating type, time, and pregnancy outcome. To test this, we completed two experiments in which INFγ and TNFα were quantified in vaginal fluid samples on d 0, d 7, d 14, d 21, d 28, and d 35 following mating. In experiment one, Angus heifers (n = 9) were used to determine cytokine concentrations in the vaginal environment between d 0 to d 35, and between artificial insemination (AI) and natural mating. In experiment 2, lactating dairy cows (n = 88) were used to determine if cytokines could be used as a potential biomarker for successful pregnancy. All vaginal flush samples were collected via Foley catheter in 20 mL of sterile saline. Statistical analysis was completed in SAS 9.4 to determine differences in cytokine concentrations based on day of gestation, mating type, and pregnancy outcome. In experiment 1, vaginal concentrations of TNFα were least (P = 0.05) in AI-bred heifers on d 35 (1.15 ± 2.97 pg/mL) and intermediate in non-pregnant heifers (4.39 ± 2.97 pg/mL) compared with natural service-bred heifers on d 7 (18.09 ± 2.97 pg/mL). INFγ was increased (P = 0.05) on d 7 following natural service (3.86 ± 0.76 pg/mL) compared with AI (0.86 ± 0.76 pg/mL). TNFα was increased (P = 0.02) on d 7 following natural service (18.09 ± 2.89 pg/ mL) compared with AI (1.93 ± 2.89 pg/mL) and was increased (P = 0.02) by d 7 after a natural mating compared with a pregnancy resulting from AI mating. In experiment two, concentrations of IFNγ were greater (P = 0.04) on d 7 (1.36 ± 0.57 pg/mL) compared with d 8 (0.24 ± 0.57 pg/mL) of gestation. There was also a tendency for TNFα concentrations to decrease (P = 0.09) from d 7 (60.06 ± 26.94 pg/mL) to d 8 (19.67 ± 26.94 pg/mL) of gestation. In conclusion, concentrations of INFγ and TNFα may not be indicative of a viable embryo or pregnancy outcome but do differ based on day of gestation and mating type, which may aid in understanding the role these cytokines play during early gestation. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
180. Isoprenoid Precursor Biosynthesis Is the Essential Metabolic Role of the Apicoplast during Gametocytogenesis in Plasmodium falciparum
- Author
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Wiley, Jessica D., Merino, Emilio F., Krai, Priscilla M., McLean, Kyle J., Tripathi, Abhai K., Vega-Rodríguez, Joel, Jacobs-Lorena, Marcelo, Klemba, Michael, and Cassera, Maria B.
- Abstract
ABSTRACTThe malaria parasite harbors a relict plastid called the apicoplast and its discovery opened a new avenue for drug discovery and development due to its unusual, nonmammalian metabolism. The apicoplast is essential during the asexual intraerythrocytic and hepatic stages of the parasite, and there is strong evidence supporting its essential metabolic role during the mosquito stages of the parasite. Supply of the isoprenoid building blocks isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) is the essential metabolic function of the apicoplast during the asexual intraerythrocytic stages. However, the metabolic role of the apicoplast during gametocyte development, the malaria stages transmitted to the mosquito, remains unknown. In this study, we showed that production of IPP for isoprenoid biosynthesis is the essential metabolic function of the apicoplast during gametocytogenesis, by obtaining normal gametocytes lacking the apicoplast when supplemented with IPP. When IPP supplementation was removed early in gametocytogenesis, developmental defects were observed, supporting the essential role of isoprenoids for normal gametocytogenesis. Furthermore, mosquitoes infected with gametocytes lacking the apicoplast developed fewer and smaller oocysts that failed to produce sporozoites. This finding further supports the essential role of the apicoplast in establishing a successful infection in the mosquito vector. Our study supports isoprenoid biosynthesis as a valid drug target for development of malaria transmission-blocking inhibitors.
- Published
- 2014
- Full Text
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181. Ambient optomechanical alignment and pupil metrology for the flight instruments aboard the James Webb Space Telescope
- Author
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Sasián, José, Youngworth, Richard N., Coulter, Phillip, Beaton, Alexander, Gum, Jeffery S., Hadjimichael, Theodore J., Hayden, Joseph E., Hummel, Susann, Hylan, Jason E., Lee, David, Madison, Timothy J., Maszkiewicz, Michael, Mclean, Kyle F., McMann, Joseph, Melf, Markus, Miner, Linda, Ohl, Raymond G., Redman, Kevin, Roedel, Andreas, Schweiger, Paul, Te Plate, Maurice, Wells, Martyn, Wenzel, Greg W., Williams, Patrick K., and Young, Jerrod
- Published
- 2014
- Full Text
- View/download PDF
182. HISTORIC AND RECENT NESTING RECORDS OF TURKEY VULTURES IN SOUTH DAKOTA.
- Author
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Igl, Lawrence D., Chepulis, Brian J., and McLean, Kyle E.
- Subjects
TURKEY vulture ,BIRD breeding ,BIRD populations ,BIRDS ,BIRD behavior ,NEST building ,NEW World vultures - Abstract
The article offers information on the nesting records of Turkey Vultures in South Dakota. Topics discussed include breeding status and distribution of Turkey Vultures in South Dakota, the nesting cycle of the vultures, and the taxonomic placement of New World Vultures of the family Cathartidae. Other topics include the decline in Turkey Vulture populations in the Great Plains in the 1800s, a population rebound between 1967 and 2011, and Turkey Vulture breeding biology.
- Published
- 2014
183. Preovulatory follicular fluid and serum metabolome profiles in lactating beef cows with thin, moderate, and obese body condition
- Author
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Horn, Emma J, Read, Casey C, Edwards, J Lannett, Schrick, F Neal, Rhinehart, Justin D, Payton, Rebecca R, Campagna, Shawn R, Klabnik, Jessica L, Clark, Hannah M, Myer, Phillip R, McLean, Kyle J, and Moorey, Sarah E
- Abstract
Extremes in body condition reduce fertility and overall productivity in beef cattle herds, due in part to altered systemic metabolic conditions that influence the intrafollicular and uterine environment. Follicular fluid and serum metabolome profiles are influenced by body composition in women and dairy cattle; however, such information is lacking in beef cattle. We hypothesized that body condition score (BCS)-related alterations in the metabolome of preovulatory follicular fluid and serum may influence oocyte maturation while impacting the oviductal or uterine environment. Therefore, we performed a study with the objective to determine the relationship between BCS and the metabolome of follicular fluid and serum in lactating beef cattle. We synchronized the development of a preovulatory follicle in 130 cows of varying BCS. We collected blood and performed transvaginal follicle aspirations to collect follicular fluid from the preovulatory follicle ~18 h after gonadotropin-releasing hormone administration to stimulate the preovulatory gonadotropin surge. We then selected follicular fluid and serum samples from cows with BCS 4 (Thin; n= 14), BCS 6 (Moderate; n= 18), or BCS >8 (Obese; n= 14) for ultra-high performance liquid chromatography-high resolution mass spectrometry. We identified differences in the follicular fluid or serum of thin, moderate, and obese animals based on multiple linear regression. MetaboAnalyst 5.0 was used for enrichment analysis of significant metabolites. We identified 38 metabolites in follicular fluid and 49 metabolites in serum. There were no significant differences in follicular fluid metabolite content among BCS classifications. There were 5, 22, and 1 serum metabolites differentially abundant between thin-obese, moderate-thin, and moderate-obese classifications, respectively (false discovery rate [FDR] < 0.10). These metabolites were enriched in multiple processes including “arginine biosynthesis,” “arginine/proline metabolism,” and “D-glutamine/D-glutamate metabolism” (FDR < 0.04). Pathways enriched with serum metabolites associated with BCS indicate potentially increased reactive oxygen species (ROS) in serum of thin cows. ROS crossing the blood follicular barrier may negatively impact the oocyte during oocyte maturation and contribute to the reduced pregnancy rates observed in thin beef cows.Extremes in body condition affect fertility and pregnancy outcomes in beef cows. Much research has been done in women and dairy cows to evaluate body condition’s effect on oocyte and embryo quality, pregnancy rates, and pregnancy outcomes. However, little work of this type has been done in beef cows and most studies do not focus on the preovulatory time period. The preovulatory time period is an essential time for the oocyte, as final stages of prematuration and the completion of oocyte maturation take place in the peri-ovulatory follicle. The follicular fluid provides the microenvironment for oocyte maturation and exchanges substances with maternal circulation at the blood follicular barrier. Alterations in maternal circulation due to extremes in body condition may pass into the follicular fluid and affect the oocyte during the preovulatory time period. Such conditions may contribute to the reduced fertility seen in beef cows with extreme body condition.This study provides new insights into the effect of extreme body condition in beef cows on maternal circulation and the potential implications for the decreased fertility and oocyte quality associated with these physiological states.
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- 2022
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184. Positive relationship of rectal temperature at fixed timed artificial insemination on pregnancy outcomes in beef cattle
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Liles, Hunter L, Schneider, Liesel G, Pohler, Ky G, Oliveira Filho, Ramiro V, Neal Schrick, F, Payton, Rebecca R, Rhinehart, Justin D, Thompson, Kevin W, McLean, Kyle, and Edwards, J Lannett
- Abstract
The overarching aim was to examine the relationship of rectal temperature at fixed time artificial insemination (FTAI) on pregnancy outcomes in a typical breeding season with expected pregnancy rates approaching 50% using Bos indicusand Bos tauruscattle. This represents a continuum of steps to test the hypothesis that elevated body temperature at or around insemination is functionally important to maximize pregnancy outcomes. Rectal temperature of Bos indicuscattle at FTAI ranged from 37.0 to 40.9 °C; 60.6% were hyperthermic. Positive factors impacting pregnancy outcomes were rectal temperature at FTAI, body condition, and estrus patch scores. Rectal temperature at FTAI was positively associated with pregnancy outcomes (P< 0.0001); per each 1 °C increase pregnancy odds increased 1.9 times (95% CI: 1.4 to 2.6). Highest pregnancy outcomes occurred with rectal temperatures exceeding 40 °C (P= 0.0004). Rectal temperature before FTAI in Bos tauruscattle ranged from 37.8 to 41.8 °C; 43.3% were hyperthermic. Factors impacting pregnancy were rectal temperature at FTAI, estrus activity, parity, and ambient conditions on day of FTAI. Rectal temperature of Bos tauruscattle at FTAI was positively associated with pregnancy (P= 0.0286); odds increased 1.45 times (95% CI: 1.0 to 2.0) per each 1 °C increase. Highest pregnancy outcomes occurred with rectal temperatures at FTAI exceeding 40 °C (P= 0.057). Moreover, positive relationship of rectal temperature at FTAI to pregnancy persisted in estrual females (71.25% of total; P= 0.0408; OR 1.5; 95% CI: 1.0 to 2.2). Mindful that 1) elevated temperatures observed in Bos indicusand Bos tauruscattle directly promote meiotic resumption of the oocyte in vitro and that 2) in vivo hyperthermia alters intrafollicular components which others have shown to potentiate ovulation and promote meiotic resumption, it is biologically plausible that an acute elevation in body temperature at or around time of insemination is functionally important to maximize pregnancy outcomes.Reproductive efficiency remains a major challenge for beef producers with 35% to 55% of females failing to become pregnant after a single insemination. While basis for failure is multi-factorial, heightened estrus activity matters for pregnancy outcomes, even when synchronizing ovulation for fixed time artificial insemination. Body temperature increases of 1.5 °C+ are common during estrus. We hypothesize that higher estrous-associated temperatures (HEAT) at/near insemination are functionally important to maximize pregnancy outcomes. Elevated temperatures equivalent to what is observed in females exhibiting HEAT have been shown to induce oocyte meiotic resumption. An acute episode of hyperthermia after the LH surge alters intrafollicular components known to potentiate ovulation and affect the oocyte. Effort to examine the relationship of rectal temperature at fixed time artificial insemination with pregnancy outcomes in a breeding season with expected pregnancy rates >50% represents a next step in the continuum of hypothesis testing. The positive relationship of rectal temperature at insemination with pregnancy outcomes that was discovered adds to foundational knowledge. Because the degree of hyperthermia is related to highest pregnancy outcomes, a case is made for HEAT to be biologically and functionally important to maximize pregnancy outcomes in cattle.Because ‘hot’ cows have higher pregnancy outcomes, a case is made for higher estrus associated-temperatures (HEAT) to be biologically and functionally important.
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- 2022
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185. The Rumen and Gastrointestinal Microbial Environment and Its Association with Feed Efficiency and Pregnancy in Female Beef Cattle.
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Martin, M. Gabbi, Cordero-Llarena, Juan F., Voy, Brynn H., McLean, Kyle J., and Myer, Phillip R.
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BEEF industry , *BEEF cattle , *CATTLE physiology , *SUSTAINABILITY , *NUTRITIONAL requirements , *CATTLE feeding & feeds - Abstract
With the anticipated population growth by 2050, the demand for high-quality protein for human consumption is set to rise. To enhance the sustainability of U.S. cattle production, producers and researchers have traditionally concentrated on improving the feed efficiency of steers through advancements in genetics, nutrition, and microbiome tools, resulting in a more marketable beef product. However, without successful pregnancies, there would be no marketable animals to feed. Despite extensive research on hormonal impacts on cattle physiology, including nutrition and reproduction, there is limited knowledge about how the rumen microbial environment is impacted by pregnancy and feed efficiency in female beef cattle. Understanding the rumen microbiome's role in feed efficiency and its response to hormonal changes during pregnancy is crucial for advancing sustainable beef cattle production. Therefore, this review highlights the importance of understanding the microbial dynamics in the rumen of pregnant beef females. Although progress has been made, gaps remain in understanding how varying nutritional requirements throughout pregnancy affect the rumen microbiome, highlighting the need for continued research. Addressing these areas will lead to more efficient and sustainable cattle production practices, benefiting beef production and contributing to global food security. [ABSTRACT FROM AUTHOR]
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- 2024
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186. The effect of growth rate on cytokine presence in uterine environment in beef heifers.
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Chaney, Elizabeth M., Schneider, Liesel G., Payton, Rebecca R., and McLean, Kyle J.
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CYTOKINES ,HEIFERS ,ANIMAL herds ,BEEF products ,DETECTION limit ,BLOCK designs - Abstract
Heifer development is the foundation of performance in breeding herds. Growth rate during development may alter uterine immune responses impacting reproductive efficiency and, thus, productivity of that animal. Angus-cross heifers (n = 48) were blocked by BW [4 blocks; weight class (WC)], placed in pens (4 heifers per pen), and pens (n = 12) were randomly assigned treatments (4 pens per treatment): 1) control; targeted 0.68 kg/day, 2) high; targeted 1.25 kg/day, and 3) low; targeted 0.11 kg/day. A randomized complete block design with pen as the experimental unit utilized mixed model ANOVAs to determine if treatment influenced BW, BCS, and uterine cytokines. Beginning at the start of treatment (d 0) BW and BCS were taken every 2 weeks. Uterine flushes were performed at d 0 and d 57. Cytokine concentrations above the detectable limit were categorized into a quartiles (1=0-25%; 2=25-50%; 3=50-75%; 4=75-100%). Samples that were below the detection limit were assigned a category value of 0. At the end of the study high treatment pens had greater BW compared to control and low pens (P = 0.01). Concentrations of MCP-1, TNFa, IL-17A, IL-8, and VEGF-A decreased from d 0 to d 57 (P < 0.05). Pens on the high treatment tended to have IL-17A concentrations in the upper quartiles compared to control and low (P = 0.06). Pens in WC 1 and 2 tended to be in the lower quartile score for VEGF-A compared with WC 4 (P = 0.07) and WC 3 was intermediate. In conclusion, these data show that growth rate and size during heifer development may impact cytokine profiles in the uterine environment of nulliparous heifers. This may impact the ability to conceive early in the first breeding season, thus potentially altering long-term reproductive efficiency. [ABSTRACT FROM AUTHOR]
- Published
- 2021
187. Long-term multidecadal data from a prairie-pothole wetland complex reveal controls on aquatic-macroinvertebrate communities.
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McLean, Kyle I., Mushet, David M., Newton, Wesley E., and Sweetman, Jon N.
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HYDROGEOLOGY , *WETLANDS , *WETLAND hydrology , *STRUCTURAL equation modeling , *ENVIRONMENTAL monitoring , *SOCIAL influence - Abstract
• Hydrogeologic setting and climate greatly influence wetland hydrology and community composition. • Aquatic-invertebrate communities shift in response to climate-driven changes in open-water area. • Biotic interactions had minimal effect on aquatic-macroinvertebrate community composition. • Climate change will likely lead to significant shifts in the communities of depressional wetlands. Interactions between climate and hydrogeologic settings contribute to the hydrologic and chemical variability among depressional wetlands, which influences their aquatic communities. These interactions and resulting variability have led to inconsistent results in terms of identifying reliable predictors of aquatic-macroinvertebrate community composition for depressional wetlands. This is especially true in the Prairie Pothole Region of North America where, in addition to pronounced climate variability, studies are often confounded by fish introductions. We used environmental monitoring data collected over a 24-year period from a complex of sixteen depressional wetlands and structural equation modeling techniques that incorporated theoretical and empirical relationships outlined in the Wetland Continuum to identify key environmental (climate and hydrogeologic setting) and biotic (competition and predation) drivers of aquatic-macroinvertebrate community composition for prairie-pothole wetlands. Uplands in the study area were primarily native prairie, thus, embedded wetlands were impacted minimally by agricultural influences. Additionally, study wetlands were predominately fishless. In the absence of the overwhelming influence of fishes, major drivers influencing aquatic-macroinvertebrate communities were revealed through the use of data spanning multidecadal-long climate cycles. We found variables related to the placement of wetlands along axes of the Wetland Continuum, e.g., hydrogeologic setting (relative wetland elevation) and hydroclimatic setting (proportion of wetland ponded), to be influential drivers of within-wetland habitat characteristics, such as the proportion of open-water area, which in turn was the strongest predictor of macroinvertebrate community composition. In contrast, predatory invertebrate and salamander abundance and non-predatory invertebrate biomass (i.e., predation and competition) were found to have minimal influence on community composition. [ABSTRACT FROM AUTHOR]
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- 2021
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188. Modelling radiation transport in high energy density systems
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McLean, Kyle
- Abstract
This thesis explores the calculations of radiative opacity and its use in modelling radiation transport within high energy density environments, such as those found in laboratory astrophysics and inertial confinement fusion research. Recent work has demonstrated that there may be substantial shortcomings in our current theories of opacity, which motivates a deep consideration of how current opacities are determined and how they are implemented into large scale simulations. Notably, we derive multiplicative correction factors which counteract inaccuracies that may arise due to differences in radiation and electron temperature when calculating such parameters in three-temperature radiation transport algorithms, which is relevant to modelling volume ignition experiments. The Multigroup Diffusion Algorithm for Radiation Transport (M-DART) is then introduced, which was written solely by the author for the intended purpose of providing a fast platform to model supersonic Marshak wave propagation. The M-DART algorithm is then utilised to highlight the necessary convergence steps in using multigroup diffusion algorithms to model radiation wave experiments, which probe the propagation of a Marshak wave through material. We find that computational parameters, such as poor group boundary positions, can lead to large changes in the properties of a Marshak wave, resulting in signatures which cannot be attributed solely to physical effects. M-DART is also used to explore the physical sensitivities present in a recent AWE-NIF shot which probed iron opacity under solar-relevant conditions. In doing this, an extensive insight into the important parameters which must be constrained in such an experiment are identified and analysed meticulously, providing a preliminary investigation into the feasibility of using modern M-DART along with the fast opacity code IMP and statistical methods to enhance findings within the experimental campaign. Finally, an investigation into line broadening due to intense radiation fields is documented and demonstrates that there may exist a region in temperature-density space where the broadening of spectral lines due to the presence of a radiation field could become dominant over Stark broadening and neutral broadening, which would have implications for the calculations of opacity and radiation transport in white dwarf atmospheres.
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- 2021
189. Generation of Transmission-Competent Human Malaria Parasites with Chromosomally-Integrated Fluorescent Reporters.
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McLean, Kyle Jarrod, Straimer, Judith, Hopp, Christine S., Vega-Rodriguez, Joel, Small-Saunders, Jennifer L., Kanatani, Sachie, Tripathi, Abhai, Mlambo, Godfree, Dumoulin, Peter C., Harris, Chantal T., Tong, Xinran, Shears, Melanie J., Ankarklev, Johan, Kafsack, Björn F. C., Fidock, David A., and Sinnis, Photini
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PLASMODIUM falciparum , *PARASITE life cycles , *MOSQUITOES , *HOSTS (Biology) , *ZINC-finger protein genetics , *FLOW cytometry - Abstract
Malaria parasites have a complex life cycle that includes specialized stages for transmission between their mosquito and human hosts. These stages are an understudied part of the lifecycle yet targeting them is an essential component of the effort to shrink the malaria map. The human parasite Plasmodium falciparum is responsible for the majority of deaths due to malaria. Our goal was to generate transgenic P. falciparum lines that could complete the lifecycle and produce fluorescent transmission stages for more in-depth and high-throughput studies. Using zinc-finger nuclease technology to engineer an integration site, we generated three transgenic P. falciparum lines in which tdtomato or gfp were stably integrated into the genome. Expression was driven by either stage-specific peg4 and csp promoters or the constitutive ef1a promoter. Phenotypic characterization of these lines demonstrates that they complete the life cycle with high infection rates and give rise to fluorescent mosquito stages. The transmission stages are sufficiently bright for intra-vital imaging, flow cytometry and scalable screening of chemical inhibitors and inhibitory antibodies. [ABSTRACT FROM AUTHOR]
- Published
- 2019
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190. Novel formulation and decomposition-based optimization for strategic supply chain management under uncertainty
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Queen's University (Kingston, Ont.). Theses (Queen's University (Kingston, Ont.)), McLean, KYLE, Queen's University (Kingston, Ont.). Theses (Queen's University (Kingston, Ont.)), and McLean, KYLE
- Abstract
This thesis proposes a novel synergy of the classical scenario and robust approaches used for strategic supply chain optimization under uncertainty. Two novel formulations, namely the naïve robust scenario formulation and the affinely adjustable robust scenario formulation, are developed, which can be reformulated into tractable deterministic optimization problems if the uncertainty is bounded by the infinity-norm. The two formulations are applied to a classical farm planning problem and an energy and bioproduct supply chain problem. The case study results demonstrate that, compared to the scenario formulation, the proposed formulations can achieve the optimal expected economic performance with smaller number of scenarios, and they can correctly indicate the feasibility of a problem. The results also show that the affinely adjustable robust scenario formulation can better address uncertainties than the naïve robust scenario formulation. Next, a strategic optimization problem for an industrial chemical supply chain from DuPont was studied. The supply chain involves one materials warehouse, five manufacturing plants, five regional product warehouses and five market locations. Each manufacturing plant produces up to 23 grades of final products from 55 grades of primary raw materials. The goal of the strategic optimization is to determine the capacities of the five plants to maximize the total profits of the supply chain system while satisfying uncertain customer demands at the different market locations. A mathematical model is developed to relate the material and product flows in the supply chain, based on which the classical scenario approach and the affinely adjustable robust scenario formulation were developed to address the uncertainty in the demands. The case study results show the advantages of the affinely robust scenario formulation over the scenario formulation. Using the affinely adjustable robust scenario formulation often results in problems with very larg, Thesis (Master, Chemical Engineering) -- Queen's University, 2014-03-24 20:39:42.761
191. Transposon mutagenesis identifies genes essential for Plasmodium falciparum gametocytogenesis.
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Ikadai, Hiromi, Shaw Saliba, Kathryn, Kanzok, Stefan M., McLean, Kyle J., Tanaka, Takeshi Q., Jun Cao, Williamson, Kim C., and Jacobs-Lorena, Marcelo
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TRANSPOSONS ,PLASMODIUM falciparum - Abstract
An abstract of the article "Transposon Mutagenesis Identifies Genes Essential for Plasmodium Falciparum Gametocytogenesis" by Hiromi Ikadai, Kathryn Shaw Saliba, Stefan M. Kanzok, Kyle J. McLean, Takeshi Q. Tanaka, Jun Cao, Kim C. Williamson, and Marcelo Jacobs-Lorena is presented.
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- 2013
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192. Alternative Sensory Methods for Evaluation of Consumer Liking.
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McLean, Kyle Geoffrey
- Published
- 2016
193. A global assessment of environmental and climate influences on wetland macroinvertebrate community structure and function.
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Epele, Luis B., Williams‐Subiza, Emilio A., Bird, Matthew S., Boissezon, Aurelie, Boix, Dani, Demierre, Eliane, Fair, Conor G., García, Patricia E., Gascón, Stephanie, Grech, Marta G., Greig, Hamish S., Jeffries, Michael, Kneitel, Jamie M., Loskutova, Olga, Maltchik, Leonardo, Manzo, Luz M., Mataloni, Gabriela, McLean, Kyle, Mlambo, Musa C., and Oertli, Beat
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WETLANDS , *SEASONAL temperature variations , *SPECIES distribution , *FRESHWATER biodiversity , *CLIMATE change , *FUNCTIONAL groups - Abstract
Estimating organisms' responses to environmental variables and taxon associations across broad spatial scales is vital for predicting their responses to climate change. Macroinvertebrates play a major role in wetland processes, but studies simultaneously exploring both community structure and community trait responses to environmental gradients are still lacking. We compiled a global dataset (six continents) from 756 depressional wetlands, including the occurrence of 96 macroinvertebrate families, their phylogenetic tree, and 19 biological traits. Using Bayesian hierarchical joint species distribution models (JSDMs), we estimated macroinvertebrate associations and compared the influences of local and climatic predictors on both individual macroinvertebrate families and their traits. While macroinvertebrate families were mainly related to broad‐scale factors (maximum temperature and precipitation seasonality), macroinvertebrate traits were strongly related to local wetland hydroperiod. Interestingly, macroinvertebrate families and traits both showed positive and negative associations to the same environmental variables. As expected, many macroinvertebrate family occurrences were positively associated with temperature, but a few showed the opposite pattern and were found in cooler or montane regions. We also found that wetland macroinvertebrate communities would likely be affected by changing climates through alterations in traits related to precipitation seasonality, temperature seasonality, and wetland area. Temperature increases may negatively affect collector and shredder functional groups. A decrease in precipitation could lead to reductions in wetland area benefiting drought‐tolerant macroinvertebrates, but it may negatively affect macroinvertebrates lacking those adaptations. Wetland processes may be compromised through broad‐scale environmental changes altering macroinvertebrate family distributions and local hydroperiod shifts altering organism traits. Our complementary family‐based and trait‐based approaches elucidate the complex effects that climate change may produce on wetland ecosystems. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
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194. Plasmodium falciparum Maf1Confers Survival upon Amino Acid Starvation
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McLean, Kyle Jarrod and Jacobs-Lorena, Marcelo
- Abstract
ABSTRACTThe target of rapamycin complex 1 (TORC1) pathway is a highly conserved signaling pathway across eukaryotes that integrates nutrient and stress signals to regulate the cellular growth rate and the transition into and maintenance of dormancy. The majority of the pathway’s components, including the central TORkinase, have been lost in the apicomplexan lineage, and it is unknown how these organisms detect and respond to nutrient starvation in its absence. Plasmodium falciparumencodes a putative ortholog of the RNA polymerase (Pol) III repressor Maf1, which has been demonstrated to modulate Pol III transcription in a TOR-dependent manner in a number of organisms. Here, we investigate the role of P. falciparum Maf1(PfMaf1) in regulating RNA Pol III expression under conditions of nutrient starvation and other stresses. Using a transposon insertion mutant with an altered Maf1expression profile, we demonstrated that proper Maf1expression is necessary for survival of the dormancy-like state induced by prolonged amino acid starvation and is needed for full recovery from other stresses that slow or stall the parasite cell cycle. This Maf1mutant is defective in the downregulation of pre-tRNA synthesis under nutrient-limiting conditions, indicating that the function of Maf1as a stress-responsive regulator of structural RNA transcription is conserved in P. falciparum. Recent work has demonstrated that parasites carrying artemisinin-resistant K13alleles display an enhanced ability to recover from drug-induced growth retardation. We show that one such artemisinin-resistant line displays greater regulation of pre-tRNA expression and higher survival upon prolonged amino acid starvation, suggesting that overlapping, PfMaf1-associated pathways may regulate growth recovery from both artemisinin treatment and amino acid starvation.IMPORTANCEEukaryote organisms sense changes in their environment and integrate this information through signaling pathways to activate response programs to ensure survival. The TORpathway is a well-studied signaling pathway found throughout eukaryotes that is known to integrate a variety of signals to regulate organismal growth in response to starvation and other stresses. The human malaria parasite Plasmodium falciparumappears to have lost the TORpathway over the course of evolution, and it is unclear how the parasite modulates its growth in response to starvation and drug treatment. Here, we show that Maf1, a protein regulated by TORin other eukaryotes, plays an important role in maintaining the parasite’s viability in the face of starvation and other forms of stress. This suggests that PfMaf1is a component of a yet-to-be-described nutrient and stress response pathway.
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- 2017
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195. A toolbox of metrology-based techniques for optical system alignment
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Sasián, José, Youngworth, Richard N., Coulter, Phillip, Ohl, Raymond G., Blake, Peter N., Bos, Brent J., Chambers, Victor J., Eichhorn, William L., Gum, Jeffrey S., Hadjimichael, Theodore J., Hagopian, John G., Hayden, Joseph E., Hetherington, Samuel E., Kubalak, David A., Mclean, Kyle F., McMann, Joseph C., Redman, Kevin W., Sampler, Henry P., Wenzel, Greg W., and Young, Jerrod L.
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- 2016
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196. Effects of Protein Supplementation on Reproductive Performance of Fall Calving Cows, and Prenatal and Postnatal Growth, and Carcass Characteristics of Calves
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Mclean, Kyle James
- Abstract
Fall calving cows were used to determine the effects of protein supplementation on reproduction, and growth and carcass characteristics of calves. Cows were individually supplemented from mid-November to mid-March for four years with either a control diet (Con; 1.82 kg/d of 38 % CP) or low diet (L; 0.2 kg/d of 8% CP). During each year, cows were reassigned dietary treatments according to calving date and BCS, with half of Con and L cows remaining on the same diets as the previous year and the other half assigned to the other diet. Cows were exposed to bulls for 60 d beginning December 1. Statistical analyses were performed with a 2 x 2 factorial design with PROC GLM and PROC FREQ. Cows on Con diets lost less BW from November to January compared with L cows (-29.8 ± 2.8 and -49.7 ± 2.8 kg, P < 0.001). Control cows had greater BCS compared with L cows in May (4.1 ± 0.1 and 3.9 ± 0.1, P = 0.03). Prenatal supplementation did not influence birth weight of calves ( P = 0.86). Concentrations of IGF-I were greater in plasma of calves suckling Con cows compared with calves from L cows (21.4 ± 2.1 and 14.8 ± 2.1ng/ml, respectively; P = 0.03). There was a prenatal x postnatal effect for BW of calves; prenatal Low and postnatal Control (LCon) calves (186.1 ± 4.4, P = 0.02) had greater 205 d adjusted weaning weights compared with prenatal Low and postnatal Low (LL), prenatal Control and postnatal Low (ConL), and prenatal Control and postnatal Control (ConCon) calves (154.9 ± 4.0, 172.4 ± 4.1, and 180.1 ± 4.2 kg, respectively). Calves from cows on Con diets during prenatal and postnatal growth had greater hot carcass weights (393.6 ± 9.1 kg) compared with LL calves (362.6 ± 9.1 kg, P = 0.02), however, other carcass characteristics were not influenced by treatment ( P < 0.17). Feeding supplemental protein that decreased BW loss and increased BCS, increased ADG of calves prior to weaning, increased IGF-I in plasma, and increased BW until harvest, but did not influence carcass characteristics of calves.
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- 2013
197. Blood parameters associated with residual feed intake in beef heifers.
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Clemmons, Brooke A., Ault-Seay, Taylor B., Henniger, Madison T., Martin, M. Gabbi, Mulon, Pierre-Yves, Anderson, David E., Voy, Brynn H., McLean, Kyle J., and Myer, Phillip R.
- Subjects
- *
CATTLE feeding & feeds , *HEIFERS , *BEEF cattle , *BLOOD urea nitrogen , *BLOOD sugar , *ENERGY consumption - Abstract
Blood chemistry may provide indicators to greater feed efficient cattle. As a side objective to previous research, 17 Angus heifers approximately two years old underwent a feed efficiency trial to determine residual feed intake (RFI) and identify variation in blood chemistry in beef cattle divergent in feed efficiency. Heifers were categorized as high- or low-RFI based ± 0.25 standard deviations around mean RFI. Blood samples were analyzed using an i-STAT handheld blood analyzer to measure sodium, potassium, glucose, blood urea nitrogen (BUN), creatinine, hematocrit, and hemoglobin. BUN was greater in high-RFI heifers (µ = 8.7 mg/dL) contrasted to low-RFI heifers (µ = 6.5 mg/dL; P = 0.01), whereas glucose was greater in low-RFI heifers (µ = 78.1 mg/dL) contrasted to high-RFI heifers (µ = 82.0 mg/dL; P = 0.05). No other blood chemistry parameters differed by RFI. The greater abundance of BUN in high-RFI heifers may indicate inefficient utilization of protein or mobilization of tissue protein for non-protein use. Greater blood glucose concentrations in low-RFI heifers may indicate greater utilization of energy precursors, such as volatile fatty acids, or metabolites. These data suggest there are readily measurable indicators of physiological variation in nutrient utilization; however, this warrants additional studies to explore. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
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198. The Impacts of Supplemental Protein during Development on Amino Acid Concentrations in the Uterus and Pregnancy Outcomes of Angus Heifers.
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Brandt, Kiernan J., Ault-Seay, Taylor B., Payton, Rebecca R., Schneider, Liesel G., Edwards, J. Lannett, Myer, Phillip R., Rhinehart, Justin D., and McLean, Kyle J.
- Subjects
- *
PREGNANCY outcomes , *AMINO acids , *HEIFERS , *BEEF industry , *REPEATED measures design - Abstract
Simple Summary: Replacement heifer development is a critical component in beef production. The identification of the ideal uterine environment will greatly benefit reproductive efficiency. Additionally, the elucidation of how diet can influence this environment could alter management strategies. Therefore, our hypothesis was that different levels of protein supplementation would affect the uterine environment of beef heifers without inhibiting development or the ability to conceive. Supplemental protein did not greatly affect the uterine environment as it pertained to amino acid concentrations. However, uterine amino acid concentrations did change throughout development, and protein supplementation can influence uterine luminal fluid composition on d 14 post-insemination, which may affect conception rates. Replacement heifer development is one of the most critical components in beef production. The composition of the ideal uterine environment could maximize fertility and reproductive efficiency. Our hypothesis was that protein supplementation would affect the uterine environment of beef heifers without inhibiting development or reproduction. To test the effects of dietary supplementation on these outcomes, a randomized complete block design with repeated measures was implemented. Angus heifers (n = 60) were blocked by body weight (BW) and randomly assigned to one of three supplemental protein treatment groups (10% (CON), 20% (P20), and 40% (P40)). Mixed model ANOVAs were used to determine whether protein supplementation treatments, time, and the interaction or protein supplementation, semen exposure, and the interaction influenced uterine luminal fluid (ULF) and pregnancy outcomes. Amino acids (AAs) were impacted (p < 0.001), specifically, the essential AAs: Arg, Iso, Leu, Val, His, Lys, Met, Phe, Trp. Protein supplementation influenced multiple AAs post-insemination: Arg (p = 0.03), CC (p = 0.05), 1-MH (p = 0.001), and Orn (p = 0.03). In conclusion, protein supplementation did not affect the reproductive development via puberty attainment or the timing of conception even with alterations in growth. However, uterine AA concentrations did change throughout development and protein supplementation influenced ULF d 14 post-insemination, which may affect the conception rates. [ABSTRACT FROM AUTHOR]
- Published
- 2023
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199. The impact of trace mineral source on systemic immunological status associated with early embryonic loss in lactating dairy cattle.
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Leach, Mary A., Tucker, Hannah L. M., Tucker, Heather A., Seymour, William, Eckelkamp, Elizabeth, Shepherd, Elizabeth, Mathew, Daniel, and McLean, Kyle J.
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CATTLE pregnancy , *FERTILITY decline , *DAIRY cattle , *CATTLE breeding , *TRACE elements - Abstract
Milk production has doubled from 1970 to 2009 but has been associated with a decline in fertility. Around 25% of failed pregnancies in dairy cattle are due to embryonic loss. Mineral bioavailability may affect embryonic retention, so we hypothesized that Zn, Cu, and Mn sources will influence systemic immunological status, which affects early embryonic retention. Holstein cows (n = 58) were randomly assigned to one of two daily oral drench trace mineral (Zn, Cu, and Mn) treatments 30 d before breeding (d -30): 1) Inorganic (ITM) or 2) Metal Methionine Hydroxy Analog Chelate (MMHAC). Before treatments began, cows were assigned to a semen type, beef vs. Holstein, equally, across treatments. All cows underwent a double Ovsynch protocol and were artificially inseminated on d 0. Humoral immunological status was assessed in serum samples taken on d 0 and d 7. Immune activity was quantified via a D2Dx systemic immunity score, which assesses samples for the presence of IgG, IgM, cytokines, and complement proteins. Ultrasonography was utilized for pregnancy confirmation on d 35, classifying cows as pregnant (P) or open. Progesterone analysis from d 21 plasma was used to categorize open cows as either non-pregnant (NP) or early embryonic loss (EEL). Statistical analyses in R Studio were completed, in two models based on pregnancy (P vs EEL and NP vs EEL), to determine the effects of mineral treatment, pregnancy status, semen type, and all interactions on humoral immune status. In the P vs EEL model, there were no effects (P > 0.30) of semen type, mineral treatment, pregnancy status, or any interactions on systemic immunity score on the day of breeding (d 0) or d 7. On d 0, cows provided MMHAC had a systemic immunity score of 0.073 ± 0.008 but were not different (P > 0.34) from ITM cows (0.063 ± 0.006). This trend continued on d 7 with systemic immunity scores of MMHAC cows not differing (P > 0.32) from ITM cows (0.055 ± 0.004 and 0.061 ± 0.003; respectively). There was a tendency (P = 0.10) for the three-way interaction of semen type x pregnancy x treatment to influence the immunity score change from d 0 to d 7. Pregnant cows on ITM treatment bred with beef semen had a positive change in immunity score (0.020 ± 0.0085). Whereas ITM cows bred with Holstein semen that underwent EEL had a negative change (-0.015 ± 0.0085); all other means were intermediate. In the NP vs EEL model, there were no effects (P > 0.14) of semen type, treatment, pregnancy status, or any interactions on systemic immunity score on d 0, d 7, or the change between d 0 and d 7. In summary, trace mineral bioavailability tended to affect systemic immunological status in P vs EEL cows but not in NP vs EEL cows, which may allow for the elucidation of immunological status differences during pregnancy establishment. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
200. Optical alignment of the Global Precipitation Measurements (GPM) star trackers
- Author
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Sasián, José, Youngworth, Richard N., Hetherington, Samuel, Osgood, Dean, McMann, Joe, Roberts, Viki, Gill, James, and McLean, Kyle
- Published
- 2013
- Full Text
- View/download PDF
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