445 results on '"Leroux D"'
Search Results
152. La synovectomie réaxation-stabilisation du poignet rhumatoïde
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Alnot Jy and Leroux D
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musculoskeletal diseases ,medicine.medical_specialty ,business.industry ,medicine.medical_treatment ,Synovectomy ,Wrist ,medicine.disease ,Sagittal plane ,Distal radioulnar articulation ,Surgery ,Tendon ,Resection ,medicine.anatomical_structure ,Rheumatoid arthritis ,medicine ,Rheumatoid wrist ,business - Abstract
The authors studied a series of 25 rheumatoid wrists, stages II and III according to Steinbrocker or Larsen, treated between 1981 and 1983 by realignment-stabilization synovectomy. The mean follow-up period was 2 1/2 years. The different steps of the operation--articular and tenosynovectomy, tendon transfers associated with dorsal ligamentoplasty--have an additive effect in achieving relief of pain, with preservation of the pre-existing mobility and long-term stability in both the frontal and sagittal planes. In other studies, resection of the ulnar head results in a 40 p. cent increment in instability with notably aggravation of ulnar sliding. Preservation of the distal radioulnar articulation according to Sauve-Kapandji's operation constitutes a new approach to rheumatoid arthritis and, in our opinion, appears to be simple and is very efficient in stabilizing the wrist immediately, thus allowing early rehabilitation of these patients. Long-term stability is affirmed by clinical and roentgenologic follow-up.
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- 1985
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153. Microphase-Separated Block Copolymers Comprising Low Surface Energy Fluorinated Blocks and Hydrophilic Blocks: Synthesis and Characterization
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Arnold, M. E., Nagai, K., Spontak, R. J., Freeman, B. D., Leroux, D., Betts, D. E., DeSimone, J. M., DiGiano, F. A., Stebbins, C. K., and Linton, R. W.
- Abstract
The synthesis and characterization of diblock and triblock copolymers produced by a two-component iniferter system is reported. These materials, designed for possible water treatment applications, consist of a hydrophilic poly(2-dimethylaminoethyl methacrylate) (PDMAEMA) block and a very low surface energy poly(1,1-dihydroperfluorooctyl methacrylate) (PFOMA) or poly(1,1,2,2-tetrahydroperfluorooctyl acrylate) (PTAN) block. Angle-dependent X-ray spectroscopy results and water contact angle measurements indicate that the surfaces of PDMAEMA-b-PFOMA diblock copolymers consist primarily of PFOMA. Transmission electron microscopy reveals that the block copolymers are microphase-separated, exhibiting either cylindrical or layered morphologies that do not change appreciably upon exposure to water. Both water uptake and water flux increase with increasing PDMAEMA content.
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- 2002
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154. Solubility and diffusivity of sodium chloride in phase-separated block copolymers of poly(2-dimethylaminoethyl methacrylate), poly(1,1prime-dihydroperfluorooctyl methacrylate) and poly(1,1,2,2-tetrahydroperfluorooctyl acrylate)
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Nagai, K., Tanaka, S., Hirata, Y., Nakagawa, T., Arnold, M. E., Freeman, B. D., Leroux, D., Betts, D. E., DeSimone, J. M., and DiGiano, F. A.
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- 2001
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155. Deletion 7q in B-Cell Low-Grade Lymphoid Malignancies: A Cytogenetic/Fluorescence In Situ Hybridization and Immunopathologic Study
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Dascalescu, C.-M., Peoc'h, M., Callanan, M., Jacob, M.-C., Sotto, M.-F., Gressin, R., Sotto, J.-J., and Leroux, D.
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- 1999
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156. Functional silica supported polymer, V. `Onto' versus `from' grafting processes
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Revillon, A. and Leroux, D.
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- 1995
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157. Effects of retinoic acid on a new human erythromegakaryocytic cell line AP-217
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Mossuz, P., Prandini, M. H., Leroux, D., Valiron, O., Schweitzer, A., Sassetti, B., and Kolodie, L.
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- 1997
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158. Phase II study with dose finding of Oral Vinorelbine in combination with Capecitabine as first-line chemotherapy of Metastatic Breast Cancer (MBC): Preliminary results of the phase II part of the study
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Nolè, F., Catania, C., Sanna, G., Mattioli, R., Crivellari, D., Foa, P., Pinotti, G., Leroux, D., Imadalou, K., and Goldhirsch, A.
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- 2006
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159. Impact of polymorphisms affecting the ACP1gene on levels of antibodies against platelet factor 4–heparin complexes
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Rollin, J., Pouplard, C., Leroux, D., May, M.‐A., and Gruel, Y.
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- 2013
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160. [Encephalopathy related to X fragility: neither inactivation nor deletion of the distal fragment q28 to qter. Enzymatic and morphometric evidence]
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Jalbert H, Ma, Baeteman, Trochet-Royer C, Mg, Mattei, Jf, Mattei, Leroux D, and Jalbert P
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Adult ,Male ,Erythrocytes ,X Chromosome ,Chromosome Fragile Sites ,Chromosome Fragility ,Glucosephosphate Dehydrogenase ,Fragile X Syndrome ,Intellectual Disability ,Humans ,Female ,Chromosome Deletion ,Enzyme Repression ,Child ,Sex Chromosome Aberrations - Abstract
Hypothesis on the nature of the fragile site Xq28 and its relations with the specific phenotype are discussed. The roles of a local inactivation (tested by G6-PD activity in 9 patients) or of a deletion Xq28 leads to qter (studied by morphometric evaluations on 2 patients and their heterozygotic mother) are not confirmed.
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- 1983
161. Erratum: The IgG Fc receptor, FcγRIIB, is a target for deregulation by chromosomal translocation in malignant lymphoma (Proceedings of the National Academy of Sciences of the United States of America (January 4, 2000) 97:1 (309-314))
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Callanan, M. B., Le Baccon, P., Mossuz, P., Duley, S., Bastard, C., Rifat Hamoudi, Dyer, M. J., Klobeck, G., Rimokh, R., Sotto, J. J., and Leroux, D.
162. BRAF as a melanoma susceptibility candidate gene?
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Laud, K., Kannengiesser, C., Avril, M. -F, Chompret, A., Stoppa-Lyonnet, D., Desjardins, L., Alain EYCHENE, Demenais, F., Andry-Benzaquen, P., Baccard, M., Bachollet, B., Basset-Seguin, N., Baspeyras, M., Berthet, P., Bonnetblanc, J. -M, Blanchet, P., Boitier, F., Bonadona, V., Caux, F., Cesarini, J. -P, Chevrant-Breton, J., Couillet, D., Courouge-Dorcier, A. -M, Demange, L., Levy, C., Dereure, O., D Incan, M., Dore, M., Esteve, E., Frenay, M., Gaillard, V., Gorin, I., Grange, F., Guillot, B., Joly, P., Laroche, L., Lasset, C., Leroux, D., Limacher, J. -M, Longy, M., Lumbroso, L., Michel, J. -L, Negrier, S., Ollivaud, L., Ortoli, J. -C, Robin, P., Sassolas, B., Triller, R., Truchetet, F., Vabres, P., Verne, L., Lenoir, G. M., and Bressac-De Paillerets, B.
163. t(11;14)(q13;q32): chronic lymphocytic leukaemia or mantle cell leukaemia?
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Dascalescu C, remy GRESSIN, Callanan M, Jj, Sotto, and Leroux D
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Chromosomes, Human, Pair 14 ,Male ,Chromosomes, Human, Pair 11 ,Lymphoma, Non-Hodgkin ,Humans ,Female ,Middle Aged ,Leukemia, Lymphocytic, Chronic, B-Cell ,Translocation, Genetic ,Aged
164. CD4+ CD56+ lineage negative malignancies: a new entity developed from malignant early plasmacytoid dendritic cells
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Jacob, M. C., Chaperot, L., Mossuz, P., Jean Feuillard, Valensi, F., Leroux, D., Béné, M. -C, Bensa, J. C., Brière, F., and Plumas, J.
165. Pathway-Based Analysis of a Melanoma Genome-Wide Association Study: Analysis of Genes Related to Tumour-Immunosuppression
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Schoof, N, Iles, Mm, Bishop, Dt, Newton Bishop JA, Barrett, Jh, Mann, Gj, Hopper, Jl, Aitken, Jf, Armstrong, Bk, Giles, Gg, Kefford, Rf, Cust, A, Jenkins, M, Aguilera, P, Badenas, C, Carrera, C, Cuellar, F, Gabriel, D, Martinez, E, Gonzalez, M, Iglesias, P, Malvehy, J, Marti Laborda, R, Mila, M, Ogbah, Z, Butille, Ja, Puig, S, Alós, L, Arance, A, Arguís, P, Campo, A, Castel, T, Conill, C, Palou, J, Rull, R, Sánchez, M, Vidal Sicart, S, Vilalta, A, Vilella, R, Martin, Ng, Montgomery, Gw, Duffy, D, Whiteman, D, Macgregor, S, Hayward, Nk, Webb, P, Parsons, P, Purdie, D, Hayward, N, Landi, Mt, Calista, D, Landi, G, Minghetti, P, Arcangeli, F, Bertazzi, Pa, Bianchi, Giovanna, Ghiorzo, Paola, Pastorino, Lorenza, Bruno, William, Battistuzzi, Linda, Gargiulo, Sara, Nasti, Sabina, Gliori, S, Origone, Paola, Queirolo, P, Mackie, R, Lang, J, Bishop, Ja, Affleck, P, Harrison, J, Randerson Moor, J, Harland, M, Taylor, Jc, Whittaker, L, Kukalizch, K, Leake, S, Karpavicius, B, Haynes, S, Mack, T, Chan, M, Taylor, Y, Davies, J, King, P, Gruis, Na, van Nieuwpoort FA, Out, C, van der Drift, C, Bergman, W, Kukutsch, N, Bavinck, Jn, Bakker, B, van der Stoep, N, ter Huurne, J, van der Rhee, H, Bekkenk, M, Snels, D, van Praag, M, Brochez, L, Gerritsen, R, Crijns, M, Vasen, H, Olsson, H, Ingvar, C, Jönsson, G, Borg, Å, Måsbäck, A, Lundgren, L, Baeckenhorn, K, Nielsen, K, Casslén, As, Helsing, P, Andresen, Pa, Rootwelt, H, Akslen, La, Molven, A, Avril, Mf, Bressac de Paillerets, B, Chaudru, V, Chateigner, N, Corda, E, Jeannin, P, Lesueur, F, de Lichy, M, Maubec, E, Mohamdi, H, Demenais, F, Andry Benzaquen, P, Bachollet, B, Bérard, F, Berthet, P, Boitier, F, Bonadona, V, Bonafé, Jl, Bonnetblanc, Jm, Cambazard, F, Caron, O, Caux, F, Chevrant Breton, J, Chompret, A, Dalle, S, Demange, L, Dereure, O, Doré, Mx, Doutre, Ms, Dugast, C, Faivre, L, Grange, F, Humbert, P, Joly, P, Kerob, D, Lasset, C, Leccia, Mt, Lenoir, G, Leroux, D, Levang, J, Lipsker, D, Mansard, S, Martin, L, Martin Denavit, T, Mateus, C, Michel, Jl, Morel, P, Olivier Faivre, L, Perrot, Jl, Robert, C, Ronger Savle, S, Sassolas, B, Souteyrand, P, Stoppa Lyonnet, D, Thomas, L, Vabres, P, Wierzbicka, E, Elder, D, Kanetsky, P, Knorr, J, Ming, M, Mitra, N, Ruffin, A, Van Belle, P, Dębniak, T, Lubiński, J, Mirecka, A, Ertmański, S, Novakovic, S, Hocevar, M, Peric, B, Cerkovnik, P, Höiom, V, Hansson, J, Schmid, H, Holland, Ea, Azizi, E, Galore Haskel, G, Friedman, E, Baron Epel, O, Scope, A, Pavlotsky, F, Yakobson, E, Cohen Manheim, I, Laitman, Y, Milgrom, R, Shimoni, I, Kozlovaa, E., Biostatistiques santé, Département biostatistiques et modélisation pour la santé et l'environnement [LBBE], Laboratoire de Biométrie et Biologie Evolutive - UMR 5558 (LBBE), Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Institut National de Recherche en Informatique et en Automatique (Inria)-VetAgro Sup - Institut national d'enseignement supérieur et de recherche en alimentation, santé animale, sciences agronomiques et de l'environnement (VAS)-Centre National de la Recherche Scientifique (CNRS)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Institut National de Recherche en Informatique et en Automatique (Inria)-VetAgro Sup - Institut national d'enseignement supérieur et de recherche en alimentation, santé animale, sciences agronomiques et de l'environnement (VAS)-Centre National de la Recherche Scientifique (CNRS)-Laboratoire de Biométrie et Biologie Evolutive - UMR 5558 (LBBE), Université de Lyon-Université de Lyon-Institut National de Recherche en Informatique et en Automatique (Inria)-VetAgro Sup - Institut national d'enseignement supérieur et de recherche en alimentation, santé animale, sciences agronomiques et de l'environnement (VAS)-Centre National de la Recherche Scientifique (CNRS), Martí Laborda, Rosa Ma., and Universitat de Barcelona
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Melanomas ,Skin Neoplasms ,Epidemiology ,medicine.medical_treatment ,[SDV]Life Sciences [q-bio] ,lcsh:Medicine ,Genome-wide association study ,0302 clinical medicine ,Polymorphism (computer science) ,Genetics of the Immune System ,lcsh:Science ,Melanoma ,Genetics ,0303 health sciences ,Multidisciplinary ,Cancer Risk Factors ,Statistics ,Immunosuppression ,Genomics ,Oncology ,Genetic Epidemiology ,030220 oncology & carcinogenesis ,Medicine ,Research Article ,medicine.medical_specialty ,Immunology ,Genetic Causes of Cancer ,Malignant Skin Neoplasms ,Single-nucleotide polymorphism ,Dermatology ,Biostatistics ,Biology ,Polymorphism, Single Nucleotide ,03 medical and health sciences ,Genome Analysis Tools ,Molecular genetics ,Genome-Wide Association Studies ,medicine ,Humans ,SNP ,Genetic Predisposition to Disease ,Statistical Methods ,Gene ,030304 developmental biology ,Immunosuppression Therapy ,Evolutionary Biology ,Population Biology ,Immunosupressió ,lcsh:R ,Computational Biology ,Human Genetics ,medicine.disease ,Genetic Polymorphism ,Clinical Immunology ,lcsh:Q ,Population Genetics ,Mathematics ,Genome-Wide Association Study - Abstract
Systemic immunosuppression is a risk factor for melanoma, and sunburn-induced immunosuppression is thought to be causal. Genes in immunosuppression pathways are therefore candidate melanoma-susceptibility genes. If variants within these genes individually have a small effect on disease risk, the association may be undetected in genome-wide association (GWA) studies due to low power to reach a high significance level. Pathway-based approaches have been suggested as a method of incorporating a priori knowledge into the analysis of GWA studies. In this study, the association of 1113 single nucleotide polymorphisms (SNPs) in 43 genes (39 genomic regions) related to immunosuppression have been analysed using a gene-set approach in 1539 melanoma cases and 3917 controls from the GenoMEL consortium GWA study. The association between melanoma susceptibility and the whole set of tumour-immunosuppression genes, and also predefined functional subgroups of genes, was considered. The analysis was based on a measure formed by summing the evidence from the most significant SNP in each gene, and significance was evaluated empirically by case-control label permutation. An association was found between melanoma and the complete set of genes (pemp = 0.002), as well as the subgroups related to the generation of tolerogenic dendritic cells (pemp = 0.006) and secretion of suppressive factors (pemp = 0.0004), thus providing preliminary evidence of involvement of tumour-immunosuppression gene polymorphisms in melanoma susceptibility. The analysis was repeated on a second phase of the GenoMEL study, which showed no evidence of an association. As one of the first attempts to replicate a pathway-level association, our results suggest that low power and heterogeneity may present challenges.
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166. Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer
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Phelan, CM, Kuchenbaecker, KB, Tyrer, JP, Kar, SP, Lawrenson, K, Winham, SJ, Dennis, J, Pirie, A, Riggan, MJ, Chornokur, G, Earp, MA, Lyra, PC, Lee, JM, Coetzee, S, Beesley, J, McGuffog, L, Soucy, P, Dicks, E, Lee, A, Barrowdale, D, Lecarpentier, J, Leslie, G, Aalfs, CM, Aben, KKH, Adams, M, Adlard, J, Andrulis, IL, Anton-Culver, H, Antonenkova, N, AOCS Study Group, Aravantinos, G, Arnold, N, Arun, BK, Arver, B, Azzollini, J, Balmaña, J, Banerjee, SN, Barjhoux, L, Barkardottir, RB, Bean, Y, Beckmann, MW, Beeghly-Fadiel, A, Benitez, J, Bermisheva, M, Bernardini, MQ, Birrer, MJ, Bjorge, L, Black, A, Blankstein, K, Blok, MJ, Bodelon, C, Bogdanova, N, Bojesen, A, Bonanni, B, Borg, Å, Bradbury, AR, Brenton, JD, Brewer, C, Brinton, L, Broberg, P, Brooks-Wilson, A, Bruinsma, F, Brunet, J, Buecher, B, Butzow, R, Buys, SS, Caldes, T, Caligo, MA, Campbell, I, Cannioto, R, Carney, ME, Cescon, T, Chan, SB, Chang-Claude, J, Chanock, S, Chen, XQ, Chiew, Y-E, Chiquette, J, Chung, WK, Claes, KBM, Conner, T, Cook, LS, Cook, J, Cramer, DW, Cunningham, JM, D'Aloisio, AA, Daly, MB, Damiola, F, Damirovna, SD, Dansonka-Mieszkowska, A, Dao, F, Davidson, R, DeFazio, A, Delnatte, C, Doheny, KF, Diez, O, Ding, YC, Doherty, JA, Domchek, SM, Dorfling, CM, Dörk, T, Dossus, L, Duran, M, Dürst, M, Dworniczak, B, Eccles, D, Edwards, T, Eeles, R, Eilber, U, Ejlertsen, B, Ekici, AB, Ellis, S, Elvira, M, EMBRACE Study, Eng, KH, Engel, C, Evans, DG, Fasching, PA, Ferguson, S, Ferrer, SF, Flanagan, JM, Fogarty, ZC, Fortner, RT, Fostira, F, Foulkes, WD, Fountzilas, G, Fridley, BL, Friebel, TM, Friedman, E, Frost, D, Ganz, PA, Garber, J, García, MJ, Garcia-Barberan, V, Gehrig, A, GEMO Study Collaborators, Gentry-Maharaj, A, Gerdes, A-M, Giles, GG, Glasspool, R, Glendon, G, Godwin, AK, Goldgar, DE, Goranova, T, Gore, M, Greene, MH, Gronwald, J, Gruber, S, Hahnen, E, Haiman, CA, Håkansson, N, Hamann, U, Hansen, TVO, Harrington, PA, Harris, HR, Hauke, J, HEBON Study, Hein, A, Henderson, A, Hildebrandt, MAT, Hillemanns, P, Hodgson, S, Høgdall, CK, Høgdall, E, Hogervorst, FBL, Holland, H, Hooning, MJ, Hosking, K, Huang, R-Y, Hulick, PJ, Hung, J, Hunter, DJ, Huntsman, DG, Huzarski, T, Imyanitov, EN, Isaacs, C, Iversen, ES, Izatt, L, Izquierdo, A, Jakubowska, A, James, P, Janavicius, R, Jernetz, M, Jensen, A, Jensen, UB, John, EM, Johnatty, S, Jones, ME, Kannisto, P, Karlan, BY, Karnezis, A, Kast, K, KConFab Investigators, Kennedy, CJ, Khusnutdinova, E, Kiemeney, LA, Kiiski, JI, Kim, S-W, Kjaer, SK, Köbel, M, Kopperud, RK, Kruse, TA, Kupryjanczyk, J, Kwong, A, Laitman, Y, Lambrechts, D, Larrañaga, N, Larson, MC, Lazaro, C, Le, ND, Le Marchand, L, Lee, JW, Lele, SB, Leminen, A, Leroux, D, Lester, J, Lesueur, F, Levine, DA, Liang, D, Liebrich, C, Lilyquist, J, Lipworth, L, Lissowska, J, Lu, KH, Lubinński, J, Luccarini, C, Lundvall, L, Mai, PL, Mendoza-Fandiño, G, Manoukian, S, Massuger, LFAG, May, T, Mazoyer, S, McAlpine, JN, McGuire, V, McLaughlin, McNeish, I, Meijers-Heijboer, H, Meindl, A, Menon, U, Mensenkamp, AR, Merritt, MA, Milne, RL, Mitchell, G, Modugno, F, Moes-Sosnowska, J, Moffitt, M, Montagna, M, Moysich, KB, Mulligan, AM, Musinsky, J, Nathanson, KL, Nedergaard, L, Ness, RB, Neuhausen, SL, Nevanlinna, H, Niederacher, D, Nussbaum, RL, Odunsi, K, Olah, E, Olopade, OI, Olsson, H, Olswold, C, O'Malley, DM, Ong, K-R, Onland-Moret, NC, OPAL Study Group, Orr, N, Orsulic, S, Osorio, A, Palli, D, Papi, L, Park-Simon, T-W, Paul, J, Pearce, CL, Pedersen, IS, Peeters, PHM, Peissel, B, Peixoto, A, Pejovic, T, Pelttari, LM, Permuth, JB, Peterlongo, P, Pezzani, L, Pfeiler, G, Phillips, K-A, Piedmonte, M, Pike, MC, Piskorz, AM, Poblete, Pocza, T, Poole, EM, Poppe, B, Porteous, ME, Prieur, F, Prokofyeva, D, Pugh, E, Pujana, MA, Pujol, P, Radice, P, Rantala, J, Rappaport-Fuerhauser, C, Rennert, G, Rhiem, K, Rice, P, Richardson, A, Robson, M, Rodriguez, GC, Rodríguez-Antona, C, Romm, J, Rookus, MA, Rossing, MA, Rothstein, JH, Rudolph, A, Runnebaum, IB, Salvesen, HB, Sandler, DP, Schoemaker, MJ, Senter, L, Setiawan, VW, Severi, G, Sharma, P, Shelford, T, Siddiqui, N, Side, LE, Sieh, W, Singer, CF, Sobol, H, Song, H, Southey, MC, Spurdle, AB, Stadler, Z, Steinemann, D, Stoppa-Lyonnet, D, Sucheston-Campbell, LE, Sukiennicki, G, Sutphen, R, Sutter, C, Swerdlow, AJ, Szabo, CI, Szafron, L, Tan, YY, Taylor, JA, Tea, M-K, Teixeira, MR, Teo, S-H, Terry, KL, Thompson, PJ, Thomsen, LCV, Thull, DL, Tihomirova, L, Tinker, AV, Tischkowitz, M, Tognazzo, S, Toland, AE, Tone, A, Trabert, B, Travis, RC, Trichopoulou, A, Tung, N, Tworoger, SS, Van Altena, AM, Van Den Berg, D, Van Der Hout, AH, Van Der Luijt, RB, Van Heetvelde, M, Van Nieuwenhuysen, E, Van Rensburg, EJ, Vanderstichele, A, Varon-Mateeva, R, Vega, A, Edwards, DV, Vergote, I, Vierkant, RA, Vijai, J, Vratimos, A, Walker, L, Walsh, C, Wand, D, Wang-Gohrke, S, Wappenschmidt, B, Webb, PM, Weinberg, CR, Weitzel, JN, Wentzensen, N, Whittemore, AS, Wijnen, JT, Wilkens, LR, Wolk, A, Woo, M, Wu, X, Wu, AH, Yang, H, Yannoukakos, D, Ziogas, A, Zorn, KK, Narod, SA, Easton, DF, Amos, CI, Schildkraut, JM, Ramus, SJ, Ottini, L, Goodman, MT, Park, SK, Kelemen, LE, Risch, HA, Thomassen, M, Offit, K, Simard, J, Schmutzler, RK, Hazelett, D, Monteiro, AN, Couch, FJ, Berchuck, A, Chenevix-Trench, G, Goode, EL, Sellers, TA, Gayther, SA, Antoniou, AC, and Pharoah, PDP
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ovarian cancer ,endocrine system diseases ,genome-wide association studies ,epidemiology ,female genital diseases and pregnancy complications ,3. Good health - Abstract
To identify common alleles associated with different histotypes of epithelial ovarian cancer (EOC), we pooled data from multiple genome-wide genotyping projects totaling 25,509 EOC cases and 40,941 controls. We identified nine new susceptibility loci for different EOC histotypes: six for serous EOC histotypes (3q28, 4q32.3, 8q21.11, 10q24.33, 18q11.2 and 22q12.1), two for mucinous EOC (3q22.3 and 9q31.1) and one for endometrioid EOC (5q12.3). We then performed meta-analysis on the results for high-grade serous ovarian cancer with the results from analysis of 31,448 $\textit{BRCA1}$ and $\textit{BRCA2}$ mutation carriers, including 3,887 mutation carriers with EOC. This identified three additional susceptibility loci at 2q13, 8q24.1 and 12q24.31. Integrated analyses of genes and regulatory biofeatures at each locus predicted candidate susceptibility genes, including OBFC1, a new candidate susceptibility gene for low-grade and borderline serous EOC.
167. Estimation of breakage function parameters for the Andrews-Mika grinding model using a stereostochastic model for liberation.
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Leroux D. and Leroux D.
- Abstract
Though sophisticated identification algorithms have been developed, the number of the model's parameters that have to be estimated remains huge; most of these (often more than 90%) are for the breakage function. A new efficient method is described for reducing their number. Second-order statistics are used to calculate the transgranular liberation spectrum of fragments coming from a parent particle of given volume and composition. Stereostochastic liberation models, often ruled by only two observable parameters (volumetric grade and mineral grain size), can be used to calculate the huge fourth-order transgranular liberation matrix. Least-square algorithms are still needed to identify the selection and size reduction functions, but for the very realistic example given the method reduces unknown parameters by over 96% from 4 200 to 138, with the breakage function share dropping from 97% to 28%., Though sophisticated identification algorithms have been developed, the number of the model's parameters that have to be estimated remains huge; most of these (often more than 90%) are for the breakage function. A new efficient method is described for reducing their number. Second-order statistics are used to calculate the transgranular liberation spectrum of fragments coming from a parent particle of given volume and composition. Stereostochastic liberation models, often ruled by only two observable parameters (volumetric grade and mineral grain size), can be used to calculate the huge fourth-order transgranular liberation matrix. Least-square algorithms are still needed to identify the selection and size reduction functions, but for the very realistic example given the method reduces unknown parameters by over 96% from 4 200 to 138, with the breakage function share dropping from 97% to 28%.
168. Simulation of closed-circuit mineral processing operations using LIMN flowsheet processing software.
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Leroux D., Canadian Mineral Processors' Annual operator's conference proceedings 1999-2003, Hardie C., Leroux D., Canadian Mineral Processors' Annual operator's conference proceedings 1999-2003, and Hardie C.
- Abstract
The simulation of closed-circuit configurations using the LIMN software is described. The software was specifically designed to turn a Microsoft Excel spreadsheet into a closed-circuit modelling and simulation platform with minimal programming, and thus simplifies the programming of closed-circuit configurations within spreadsheets. Examples are presented of the applications of the software, including the simulation of multi-stage cyclone circuits, closed-circuit regrinding and locked-cycle flotation tests., The simulation of closed-circuit configurations using the LIMN software is described. The software was specifically designed to turn a Microsoft Excel spreadsheet into a closed-circuit modelling and simulation platform with minimal programming, and thus simplifies the programming of closed-circuit configurations within spreadsheets. Examples are presented of the applications of the software, including the simulation of multi-stage cyclone circuits, closed-circuit regrinding and locked-cycle flotation tests.
169. Determination of silver-bearing minerals in the Lady Loretta ore.
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Di Prisco G., Canadian Mineral Processors' Annual operator's conference proceedings 1999-2003, Leroux D., Scott D., Di Prisco G., Canadian Mineral Processors' Annual operator's conference proceedings 1999-2003, Leroux D., and Scott D.
- Abstract
The Queensland deposit averages 5.9% Pb, 17.1% Zn and 97 g/t Ag, mostly in fairly complex intergrowths of pyrite, sphalerite and galena. Average silver distribution from four pilot plants was 28% in the lead concentrate, 49% in the zinc concentrate and 23% in the final tailings, whereas at other deposits Ag is typically a co-product of Cu or Pb sulphide flotation. The consistently poor Ag recovery and unusual distribution was thoroughly investigated, a mineralogical plan being devised to determine whether these results were related to the nature and mode of occurrence of Ag carriers. Work was performed to determine discrete Ag-bearing minerals and/or Ag contained in solid solution in a suite of commonly occurring sulphides, by means of ore microscopy, SEM methods, electron microprobe and ion microprobe analyses. It was concluded that Ag at Lady Loretta is strongly associated with sphalerite and that options available for increasing its recovery are limited to improving Zn recoveries and negotiating appropriate sales contracts with Zn refineries., The Queensland deposit averages 5.9% Pb, 17.1% Zn and 97 g/t Ag, mostly in fairly complex intergrowths of pyrite, sphalerite and galena. Average silver distribution from four pilot plants was 28% in the lead concentrate, 49% in the zinc concentrate and 23% in the final tailings, whereas at other deposits Ag is typically a co-product of Cu or Pb sulphide flotation. The consistently poor Ag recovery and unusual distribution was thoroughly investigated, a mineralogical plan being devised to determine whether these results were related to the nature and mode of occurrence of Ag carriers. Work was performed to determine discrete Ag-bearing minerals and/or Ag contained in solid solution in a suite of commonly occurring sulphides, by means of ore microscopy, SEM methods, electron microprobe and ion microprobe analyses. It was concluded that Ag at Lady Loretta is strongly associated with sphalerite and that options available for increasing its recovery are limited to improving Zn recoveries and negotiating appropriate sales contracts with Zn refineries.
170. Troubleshooting flotation cell operation using gas velocity measurements.
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Dahlke R., Canadian Mineral Processors' Annual operator's conference proceedings 1999-2003, Finch J.A., Gomez C.O., Leroux D., Scott D., Dahlke R., Canadian Mineral Processors' Annual operator's conference proceedings 1999-2003, Finch J.A., Gomez C.O., Leroux D., and Scott D.
- Abstract
Flotation efficiency depends on how effectively air is dispersed into small bubbles, which can be characterised by measuring the bubble surface area flux. One approach to its industrial measurement is based on measuring two variables, gas velocity and gas hold-up, using separate sensors. Plant testing of a gas velocity sensor gave evidence of a series of operational problems that it may be necessary to correct before characterising gas dispersion. Features detected included uneven distribution of air within a cell and along a bank, faulty air and slurry valves identified during attempts to redistribute air, and poor control of pulp level and gas flow. The sensor can be rapidly relocated, is simple and reliable to operate, and gives highly reproducible results provided the sampled cell is stable., Flotation efficiency depends on how effectively air is dispersed into small bubbles, which can be characterised by measuring the bubble surface area flux. One approach to its industrial measurement is based on measuring two variables, gas velocity and gas hold-up, using separate sensors. Plant testing of a gas velocity sensor gave evidence of a series of operational problems that it may be necessary to correct before characterising gas dispersion. Features detected included uneven distribution of air within a cell and along a bank, faulty air and slurry valves identified during attempts to redistribute air, and poor control of pulp level and gas flow. The sensor can be rapidly relocated, is simple and reliable to operate, and gives highly reproducible results provided the sampled cell is stable.
171. Bubble surface area flux: a parameter to characterise flotation cells.
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Finch J., Proceedings 31st annual meeting of the Canadian Mineral Processors, held in Ottawa, Ontario 19-Jan-9921-Jan-99, Filippone R., Gomez C., Hardie C., Leichtle G., Leroux D., Finch J., Proceedings 31st annual meeting of the Canadian Mineral Processors, held in Ottawa, Ontario 19-Jan-9921-Jan-99, Filippone R., Gomez C., Hardie C., Leichtle G., and Leroux D.
- Abstract
Bubble surface area flux, S(b), is the surface area of bubbles (in m2) per unit time (in s) per unit cross-sectional area of flotation machine (in m2). S(b) equals six times the gas flow rate divided by the product of cell cross-section and mean bubble diameter. Bubble surface area flux is now receiving wide attention as a possible key machine variable for flotation diagnosis and modelling. In column flotation of recycled paper, the dependence of ink recovery on S(b) has been shown to be the same regardless of column size or sparger type; in mechanical cells, rate constant has been found to be related to S(b) independent of impeller type. The use of S(b) is limited by the problem of measurement, primarily that of estimating d(b). Exploratory work has been carried out in a mechanical cell with a prototype probe designed to estimate d(b) from conductivity measurements., Bubble surface area flux, S(b), is the surface area of bubbles (in m2) per unit time (in s) per unit cross-sectional area of flotation machine (in m2). S(b) equals six times the gas flow rate divided by the product of cell cross-section and mean bubble diameter. Bubble surface area flux is now receiving wide attention as a possible key machine variable for flotation diagnosis and modelling. In column flotation of recycled paper, the dependence of ink recovery on S(b) has been shown to be the same regardless of column size or sparger type; in mechanical cells, rate constant has been found to be related to S(b) independent of impeller type. The use of S(b) is limited by the problem of measurement, primarily that of estimating d(b). Exploratory work has been carried out in a mechanical cell with a prototype probe designed to estimate d(b) from conductivity measurements.
172. Model predictive control of the flotation process.
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Suichies M., Proceedings 31st annual meeting of the Canadian Mineral Processors, held in Ottawa, Ontario 19-Jan-9921-Jan-99, Dechert C., Leroux D., Trusiak A., Suichies M., Proceedings 31st annual meeting of the Canadian Mineral Processors, held in Ottawa, Ontario 19-Jan-9921-Jan-99, Dechert C., Leroux D., and Trusiak A.
- Abstract
Model predictive control is known to have better performance than PID (proportional integral derivative) control for processes with long delays, such as flotation circuits. A model predictive control algorithm was implemented on an industrial control system and applied to many sulphide flotation circuits in the Brunswick concentrator, New Brunswick. In most cases the manipulated variable was collector addition. As long as it is provided with adequate process models, the performance of the controller is good on all the circuits. Significant reductions of grade variance are reported and the controller responds well to set-point changes. The user-friendly, graphical nature of the computing environment has led to a high degree of acceptance by both process engineers and flotation operators., Model predictive control is known to have better performance than PID (proportional integral derivative) control for processes with long delays, such as flotation circuits. A model predictive control algorithm was implemented on an industrial control system and applied to many sulphide flotation circuits in the Brunswick concentrator, New Brunswick. In most cases the manipulated variable was collector addition. As long as it is provided with adequate process models, the performance of the controller is good on all the circuits. Significant reductions of grade variance are reported and the controller responds well to set-point changes. The user-friendly, graphical nature of the computing environment has led to a high degree of acceptance by both process engineers and flotation operators.
173. The application of simulation and design-of-experiments techniques to the optimisation of grinding circuits at the Heath Steele concentrator.
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Leroux D., Proceedings 31st annual meeting of the Canadian Mineral Processors, held in Ottawa, Ontario 19-Jan-9921-Jan-99, Hutchison R., Smith L.L., Leroux D., Proceedings 31st annual meeting of the Canadian Mineral Processors, held in Ottawa, Ontario 19-Jan-9921-Jan-99, Hutchison R., and Smith L.L.
- Abstract
The grinding circuit of the concentrator, in New Brunswick, was sampled under five different sets of operating conditions. The balanced results of the sampling campaigns were used to calibrate steady-state rod mill, ball mill and cyclone models using JKSimMet simulation software. Thirteen process variables had the potential to affect significantly the performance of the grinding circuit. Statistical experimental design techniques were applied to planning the suite of simulations. The effect of each factor on three performance indices was modelled with empirical polynomial relationships using Design-Expert software. The relationships were used to identify the conditions under which the cyclone overflow size distribution was maximised while respecting the constraints of circulating load and cyclone density. Among the most interesting results was the prediction of a set of conditions where the circuit target size distribution was achieved with only three ball mills instead of four., The grinding circuit of the concentrator, in New Brunswick, was sampled under five different sets of operating conditions. The balanced results of the sampling campaigns were used to calibrate steady-state rod mill, ball mill and cyclone models using JKSimMet simulation software. Thirteen process variables had the potential to affect significantly the performance of the grinding circuit. Statistical experimental design techniques were applied to planning the suite of simulations. The effect of each factor on three performance indices was modelled with empirical polynomial relationships using Design-Expert software. The relationships were used to identify the conditions under which the cyclone overflow size distribution was maximised while respecting the constraints of circulating load and cyclone density. Among the most interesting results was the prediction of a set of conditions where the circuit target size distribution was achieved with only three ball mills instead of four.
174. Towards the optimisation of flotation circuits with statistical design of experiments.
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Leroux D., Proceedings 29th annual meeting of the Canadian Mineral Processors, held in Ottawa, Ontario 21-Jan-9723-Jan-97, Grant R., Leroux D., Proceedings 29th annual meeting of the Canadian Mineral Processors, held in Ottawa, Ontario 21-Jan-9723-Jan-97, and Grant R.
- Abstract
The chalcopyrite-galena separation circuit at Noranda's Brunswick plant in New Brunswick is a complex system, with more than 20 variables affecting processing. Statistical design of experiments (SDE) techniques have been applied to the CuSep flotation step at laboratory scale to improve the performance of the CuSep circuit. The factors which most affect process responses were identified using fractional factorial designs while optimisation tests were carried out based on response surface modelling techniques. Every series of tests revealed new information which led to significant circuit performance improvements. The metallurgical gain may be as high as 4% points of copper recovery in the CuSep circuit., The chalcopyrite-galena separation circuit at Noranda's Brunswick plant in New Brunswick is a complex system, with more than 20 variables affecting processing. Statistical design of experiments (SDE) techniques have been applied to the CuSep flotation step at laboratory scale to improve the performance of the CuSep circuit. The factors which most affect process responses were identified using fractional factorial designs while optimisation tests were carried out based on response surface modelling techniques. Every series of tests revealed new information which led to significant circuit performance improvements. The metallurgical gain may be as high as 4% points of copper recovery in the CuSep circuit.
175. Mineral liberation analysis of Brunswick Cu-Pb rougher flotation streams.
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Leroux D., Proceedings 28th annual meeting of the Canadian Mineral Processors, held in Ottawa, Ontario 23-Jan-9625-Jan-96, Cooper M., Petruk W., Leroux D., Proceedings 28th annual meeting of the Canadian Mineral Processors, held in Ottawa, Ontario 23-Jan-9625-Jan-96, Cooper M., and Petruk W.
- Abstract
Quantitative mineralogical analysis of Cu-Pb streams allowed the examination of the fundamentals of Pb/Zn selectivity in the flotation plant. It was found that Pb and Cu recovery is very dependent on galena and chalcopyrite liberation. To raise the recovery of these minerals above 80% the rougher feed material needs to be ground much finer. This is because in the rougher tails, most of the galena and chalcopyrite grains are locked in very low-grade middlings. It was also found that interlocking is not primarily responsible for the carryover of sphalerite and pyrite to the Cu-Pb concentrate. Incomplete depression, accounting for about half of the unwanted, floated sphalerite in the Cu-Pb rougher concentrate, was identified as the main contributor to the low Pb/Zn selectivity. More than half of both sphalerite and pyrite reporting to the Cu-Pb concentrate appears completely free. The most significant outcome of the study is that a finer grind size alone would not solve the selectivity problem. If the grind is much finer than 45 microns (d80), the recovery of Pb and Cu should increase. However, the important mechanism of incomplete depression will remain and considerable amounts of sphalerite and pyrite will still report to the Cu-Pb concentrate., Quantitative mineralogical analysis of Cu-Pb streams allowed the examination of the fundamentals of Pb/Zn selectivity in the flotation plant. It was found that Pb and Cu recovery is very dependent on galena and chalcopyrite liberation. To raise the recovery of these minerals above 80% the rougher feed material needs to be ground much finer. This is because in the rougher tails, most of the galena and chalcopyrite grains are locked in very low-grade middlings. It was also found that interlocking is not primarily responsible for the carryover of sphalerite and pyrite to the Cu-Pb concentrate. Incomplete depression, accounting for about half of the unwanted, floated sphalerite in the Cu-Pb rougher concentrate, was identified as the main contributor to the low Pb/Zn selectivity. More than half of both sphalerite and pyrite reporting to the Cu-Pb concentrate appears completely free. The most significant outcome of the study is that a finer grind size alone would not solve the selectivity problem. If the grind is much finer than 45 microns (d80), the recovery of Pb and Cu should increase. However, the important mechanism of incomplete depression will remain and considerable amounts of sphalerite and pyrite will still report to the Cu-Pb concentrate.
176. Prediction of particle composition distribution after fragmentation of heterogeneous materials.
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Barbery G., Leroux D., Barbery G., and Leroux D.
177. Crystal structure of Mn3Si2Te6
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Vincent, H., primary, Leroux, D., additional, Bijaoui, D., additional, Rimet, R., additional, and Schlenker, C., additional
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- 1986
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178. Translocation (4;11) in a case of malignant lymphoma
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Leroux, D., primary, Jalbert, H., additional, Bar, J., additional, and Monteil, M., additional
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- 1988
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179. Prediction of particle composition distribution after fragmentation of heterogeneous materials
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Barbery, G., primary and Leroux, D., additional
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- 1988
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180. Translocation t(13;17)(q12–14;p12–13) in two patients with lymphocytic lymphoma
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Leroux, D., primary, Sotto, J.J., additional, Jacob, M.C., additional, Couderc, P., additional, Monteil, M., additional, and Jalbert, P., additional
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- 1989
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181. Modern automatic tools for an identification and a field-oriented control design of an induction machine: a nonlinear decoupling structure
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Millet, C., primary, Leroux, D., additional, Li, Y., additional, Feuvrie, B., additional, and Bergmann, C., additional
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182. Direct and label-free gram classification of bacterial colonies on agar using hyperspectral imaging
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Popp, Jürgen, Tuchin, Valery V., Pavone, Francesco S., Midahuen, R., Barlas, P., Fulchiron, C., Laloum, E., Mahé, P., and Leroux, D.
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- 2018
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183. Real-time MMSE turbo-equalization on the TMS320C5509 fixed-point DSP.
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Le Bidan, R., Laot, C., and Leroux, D.
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- 2004
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184. Modern automatic tools for an identification and a field-oriented control design of an induction machine: a nonlinear decoupling structure.
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Millet, C., Leroux, D., Li, Y., Feuvrie, B., and Bergmann, C.
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- 1997
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185. Field oriented control of induction machine-simulation and realization.
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Millet, C., Leroux, D., and Bergmann, C.
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- 1996
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186. Cardiac synovial sarcoma with translocation (X;18) associated with asbestos exposure.
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Le Marc'hadour, F., Péoc'h, M., Pasquier, B., Leroux, D., and Péoc'h, M
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- 1994
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187. Les thrombocytopénies induites par l’héparine : données récentes.
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Gruel, Y., Rollin, J., Leroux, D., and Pouplard, C.
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HEPARIN , *THROMBOCYTOPENIA , *IMMUNE response , *BLOOD platelets , *IMMUNOGLOBULINS , *ENZYME-linked immunosorbent assay - Abstract
Résumé: Bien que plus rares aujourd’hui, les thrombopénies induites par l’héparine (TIH) demeurent une complication iatrogène grave qu’il faut savoir reconnaître. Une TIH résulte d’une réponse immune atypique à l’héparine avec la synthèse d’anticorps IgG spécifiques du facteur plaquettaire 4 (FP4) modifié et activant les plaquettes, les leucocytes et l’endothélium. Cette activation explique que la diminution des plaquettes soit associée à une hypercoagulabilité avec des thromboses dans près d’un cas sur deux. Le diagnostic est parfois évoqué par des manifestations cliniques atypiques (nécrose cutanée, hypotension, amnésie ou dyspnée après injection d’héparine). Le dépistage d’une TIH repose sur la surveillance des plaquettes, restreinte avec les héparines de bas poids moléculaire (HBPM) aux malades à risque, après chirurgie cardiaque, vasculaire ou orthopédique notamment, mais étendue à tous les cas traités par héparine non fractionnée (HNF). Le diagnostic doit être confirmé biologiquement même si la présomption clinique est forte. À cet égard, des tests de type Elisa rapides et spécifiques sont désormais disponibles pour la détection des anticorps anti-FP4/héparine. Toutefois, leur spécificité est médiocre et des tests fonctionnels évaluant l’agrégation plaquettaire ou la libération de sérotonine radiomarquée doivent souvent être réalisés. Pour le traitement d’une TIH, l’argatroban (antithrombine directe) est utilisable chez l’insuffisant rénal et sera dans ce cas préféré au danaparoïde sodique (héparinoïde principalement anti-Xa). Le fondaparinux (anti-Xa sélectif), recommandé par certains, est non validé dans cette indication, et ne peut être utilisé qu’en cas de suspicion. La prévention des TIH sera améliorée par la prescription des nouveaux anticoagulants oraux. [ABSTRACT FROM AUTHOR]
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- 2014
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188. Mediastinal synovial sarcoma with t(X;18)
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Le Marc'Hadour, F., Pasquier, B., Leroux, D., and Jacrot, M.
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- 1991
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189. Overview of SMOS performance in terms of global soil moisture monitoring after six years in operation.
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Kerr, Y.H., Al-Yaari, A., Rodriguez-Fernandez, N., Parrens, M., Molero, B., Leroux, D., Bircher, S., Mahmoodi, A., Mialon, A., Richaume, P., Delwart, S., Al Bitar, A., Pellarin, T., Bindlish, R., Jackson, T.J., Rüdiger, C., Waldteufel, P., Mecklenburg, S., and Wigneron, J.-P.
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SOIL moisture , *SEAWATER salinity , *ENVIRONMENTAL monitoring , *ARTIFICIAL neural networks , *CLIMATE change - Abstract
The Soil Moisture and Ocean Salinity satellite (SMOS) was launched in November 2009 and started delivering data in January 2010. The commissioning phase ended in May 2010. Subsequently, the satellite has been in operation for over six years while the retrieval algorithms from Level 1 (L1) to Level 2 (L2) underwent significant evolutions as knowledge improved. Moreover, other approaches for retrieval at L2 over land were investigated while Level 3 (L3) and Level 4 (L4) were initiated. In this paper, these improvements were assessed by inter-comparisons of the current L2 (V620) against the previous version (V551) and new products (using neural networks referred to as SMOS-NN) and L3 (referred to as SMOS-L3). In addition, a global evaluation of different SMOS soil moisture (SM) products (SMOS-L2, SMOS-L3, and SMOS-NN) was performed comparing products with those of model simulations and other satellites. Finally, all products were evaluated against in situ measurements of soil moisture (SM). To achieve such a goal a set of metrics to evaluate different satellite products are suggested. The study demonstrated that the V620 shows a significant improvement (including those at L1 improving L2) with respect to the earlier version V551. Results also show that neural network based approaches can often yield excellent results over areas where other products are poor. Finally, global comparison indicates that SMOS behaves very well when compared to other sensors/approaches and gives consistent results over all surfaces from very dry (African Sahel, Arizona), to wet (tropical rain forests). RFI (Radio Frequency Interference) is still an issue even though detection has been greatly improved through the significant reduction of RFI sources in several areas of the world. When compared to other satellite products, the analysis shows that SMOS achieves its expected goals and is globally consistent over different eco climate regions from low to high latitudes and throughout the seasons. [ABSTRACT FROM AUTHOR]
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- 2016
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190. Viability of 3 h grown bacterial micro-colonies after direct Raman identification.
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Mathey, R., Dupoy, M., Espagnon, I., Leroux, D., Mallard, F., and Novelli-Rousseau, A.
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BACTERIAL colonies , *RAMAN spectra , *ANTIBIOTICS , *DISEASE susceptibility , *BIOMARKERS - Abstract
Clinical diagnostics in routine microbiology still mostly relies on bacterial growth, a time-consuming process that prevents test results to be used directly as key decision-making elements for therapeutic decisions. There is some evidence that Raman micro-spectroscopy provides clinically relevant information from a limited amount of bacterial cells, thus holding the promise of reduced growth times and accelerated result delivery. Indeed, bacterial identification at the species level directly from micro-colonies at an early time of growth (6 h) directly on their growth medium has been demonstrated. However, such analysis is suspected to be partly destructive and could prevent the further growth of the colony needed for other tests, e.g. antibiotic susceptibility testing (AST) . In the present study, we evaluated the effect of the powerful laser excitation used for Raman identification on micro-colonies probed after very short growth times. We show here, using envelope integrity markers (Syto 9 and Propidium Iodide) directly on ultra-small micro-colonies of a few tens of Escherichia coli and Staphylococcus epidermidis cells (3 h growth time), that only the cells that are directly impacted by the laser lose their membrane integrity. Growth kinetics experiments show that the non-probed surrounding cells are sometimes also affected but that the micro-colonies keep their ability to grow, resulting in normal aspect and size of colonies after 15 h of growth. Thus, Raman spectroscopy could be used for very early (< 3 h) identification of grown micro-organisms without impairing further antibiotics susceptibility characterization steps [ABSTRACT FROM AUTHOR]
- Published
- 2015
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191. The most frequent t(14;19)(q32;q13)-positive B-cell malignancy corresponds to an aggressive subgroup of atypical chronic lymphocytic leukemia.
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Chapiro, E., Radford-Weiss, I., Bastard, C., Luquet, I., Lefebvre, C., Callet-Bauchu, E., Leroux, D., Talmant, P., Mozziconacci, M.-J., Mugneret, F., Struski, S., Raynaud, S., Andrieux, J., Barin, C., Jotterand, M., Mossafa, H., Ramond, S., Terré, C., Lippert, E., and Berger, F.
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- *
LETTERS to the editor , *CHRONIC lymphocytic leukemia - Abstract
A letter to the editor is presented which is about t-positive B-cell malignancy in atypical chronic lymphocytic leukemia.
- Published
- 2008
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192. Interphase FISH: a rapid method for detecting malignant plasma cells in multiple myeloma patients submitted to autologous transplantation.
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Dascalescu, C M, Callanan, M, Chauvet, M, Le Baccon, P, Pégourié-Bandelier, B, Garban, F, Sotto, J J, and Leroux, D
- Subjects
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AUTOTRANSPLANTATION , *ANEUPLOIDY , *MULTIPLE myeloma - Abstract
Fluorescence in situ hybridization (FISH) on interphase nuclei has been shown to be an efficient method for detecting aneuploidy in multiple myeloma (MM). The aim of this study was to test the feasibility of FISH techniques for detecting malignant cells in the harvests of MM patients submitted to autologous transplantation. As trisomy 9 (T9) is a frequent event in MM, we used it as a genetic marker of malignant plasma cells. T9 was detected in 45 out of 55 MM bone marrow samples (81.8%) using a chromosome 9 centromeric (C9C) probe. Twenty-four of the 55 MM patients were subjected to high-dose therapy followed by autologous unselected progenitor cell transplantation. Trisomy 9 was detected in 20 patients and was used as a marker of malignant cells. Upon karyotypic analysis, three of the four remaining patients without T9 showed an unbalanced translocation leading to a complete trisomy of the long arm of chromosome 1 (T1q). We thus used a 1q juxtacentromeric probe, pUC1.77, as another genetic marker of malignant plasma cells in these three further patients. FISH with C9C or pUC1.77 probes was performed on the harvests of these 23 patients and detected clonal cells in 11 transplants. The disease-free survival from graft was significantly longer for the patients who had no malignant cells in their transplant (P = 0.009). The median disease-free survival was 23 months in these patients, as compared to 12 months in the patients whose transplant was contaminated. As almost all MM are cytogenetically abnormal, FISH with adequate probes represents a simple, quantitative tool for rapid detection of malignant cells in the harvests. Our results also suggest that the presence of MM cells in the transplant may be predictive of poor outcome. [ABSTRACT FROM AUTHOR]
- Published
- 1999
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193. 129 Cytogenetic analysis of lung carcinoma xenografted into athymic mice
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Jacrot, M., Leroux, D., and Brambilla, E.
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- 1989
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194. Biochemical pathway of antigen processing by HLA class II molecules in B cell lymphomas.
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Magniez, N., Roucard, C., Sotto, J. J., Leroux, D., and Garban, F.
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LETTERS to the editor , *HLA histocompatibility antigens - Abstract
Presents a letter to the editor about the the biosynthesis of human leukocyte antigen published in the 2004 issue of "Leukemia."
- Published
- 2004
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195. Genetic variation at 9p22.2 and ovarian cancer risk for BRCA1 and BRCA2 mutation carriers
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Thomas v O Hansen, Amanda B. Spurdle, Anne-Marie Gerdes, Sue Healey, Per Karlsson, Tomasz Huzarski, Mary B. Daly, Mary Porteous, T. Caldes, Ulf Kristoffersson, Ignacio Blanco, A. Miron, Laurence Faivre, Barbara Wappenschmidt, Laurence Venat-Bouvet, Marie Stenmark Askmalm, Olga M. Sinilnikova, Susan Peock, Alessandra Viel, Conxi Lázaro, Katherine L. Nathanson, Laurent Castera, Douglas F. Easton, Susan L. Neuhausen, Jan Lubinski, Phuong L. Mai, Virginie Moncoutier, Paolo Radice, Heli Nevanlinna, Christi J Asperen, Xianshu Wang, Brita Arver, Christian Sutter, Senno Verhoef, Rosette Lidereau, Mary S Beattie, Bjarni A Agnarsson, Ina Ruehl, Monica Barile, Bent Ejlertsen, Laura Ottini, Catherine Noguès, Jennifer A. Przybylo, Cinzia Casella, Trevor Cole, Norbert Arnold, Sandra Fert-Ferrer, Hilmi Ozcelik, Irene L. Andrulis, Susan M. Domchek, Valérie Bonadona, Kirsten B. Moysich, David E. Goldgar, Anna Jakubowska, Paul D.P. Pharoah, Beth Y. Karlan, Jenny Gross, Gaia Roversi, Tadeusz Dębniak, Hanne Meijers-Heijboer, Susan J. Ramus, Dorthe G. Crüger, Zachary S. Fredericksen, Siranoush Manoukian, Viviana Gismondi, Maria A. Caligo, Helene Holland, Laure Barjhoux, Gord Glendon, Ana Osorio, Jacques Simard, John L. Hopper, Mercedes Durán, Kristiina Aittomäki, Håkan Olsson, Mads Thomassen, Fabio Capra, Patrick J. Morrison, Britta Fiebig, Mary Beth Terry, Marinus J. Blok, Evgeny N. Imyanitov, Joseph Vijai, Javier Benitez, Mark T. Rogers, D. Gareth Evans, Helmut Deissler, Tomasz Byrski, Sylvie Mazoyer, Laura Papi, Dominique Stoppa-Lyonnet, Marco Montagna, Kenneth Offit, Cezary Cybulski, Dominique Leroux, Georgia Chenevix-Trench, Danielle Bodmer, Lucy Side, Margaret Cook, Ros Eeles, Alan Donaldson, Christiana Kartsonaki, Carole Brewer, Matti A. Rookus, Jacek Gronwald, Dorothea Gadzicki, Shirley Hodgson, Jonathan Beesley, Gabriella Pichert, Andrew K. Godwin, Dieter Niederacher, Yuan Chun Ding, Torben A Kruse, Paolo Peterlongo, Rita K. Schmutzler, Xiaoqing Chen, Annika Lindblom, Fergus J. Couch, Maaike P.G. Vreeswijk, Mark H. Greene, Esther M. John, Raymonda Varon-Mateeva, Simon A. Gayther, Margreet G. E. M. Ausems, Tomas Kirchhoff, Lars Jønson, Madeleine M. A. Tilanus-Linthorst, Ute Hamann, Marie-Agnès Collonge-Rame, Antonis C. Antoniou, M John Kennedy, Karin Kast, Theo A. M. van Os, Penny Soucy, Debra Frost, Alison M. Dunning, Daniela Zaffaroni, Anna Allavena, Maria-Isabel Tejada, Yves-Jean Bignon, Lesley McGuffog, Bohdan Górski, Åke Borg, Fabienne Prieur, Bernard Peissel, Helen Gregory, Clare Oliver, Saundra S. Buys, Ana Dutra-Clarke, Alfons Meindl, Ramunas Janavicius, Uffe Birk Jensen, Miguel de la Hoya, Ramus, S, Kartsonaki, C, Gayther, S, Pharoah, P, Sinilnikova, O, Beesley, J, Chen, X, Mcguffog, L, Healey, S, Couch, F, Wang, X, Fredericksen, Z, Peterlongo, P, Manoukian, S, Peissel, B, Zaffaroni, D, Roversi, G, Barile, M, Viel, A, Allavena, A, Ottini, L, Papi, L, Gismondi, V, Capra, F, Radice, P, Greene, M, Mai, P, Andrulis, I, Glendon, G, Ozcelik, H, Thomassen, M, Gerdes, A, Kruse, T, Cruger, D, Jensen, U, Caligo, M, Olsson, H, Kristoffersson, U, Lindblom, A, Arver, B, Karlsson, P, Stenmark Askmalm, M, Borg, A, Neuhausen, S, Ding, Y, Nathanson, K, Domchek, S, Jakubowska, A, Lubiński, J, Huzarski, T, Byrski, T, Gronwald, J, Górski, B, Cybulski, C, Dębniak, T, Osorio, A, Durán, M, Tejada, M, Benítez, J, Hamann, U, Rookus, M, Verhoef, S, Tilanus Linthorst, M, Vreeswijk, M, Bodmer, D, Ausems, M, van Os, T, Asperen, C, Blok, M, Meijers Heijboer, H, Peock, S, Cook, M, Oliver, C, Frost, D, Dunning, A, Evans, D, Eeles, R, Pichert, G, Cole, T, Hodgson, S, Brewer, C, Morrison, P, Porteous, M, Kennedy, M, Rogers, M, Side, L, Donaldson, A, Gregory, H, Godwin, A, Stoppa Lyonnet, D, Moncoutier, V, Castera, L, Mazoyer, S, Barjhoux, L, Bonadona, V, Leroux, D, Faivre, L, Lidereau, R, Nogues, C, Bignon, Y, Prieur, F, Collonge Rame, M, Venat Bouvet, L, Fert Ferrer, S, Miron, A, Buys, S, Hopper, J, Daly, M, John, E, Terry, M, Goldgar, D, Hansen, T, Jønson, L, Ejlertsen, B, Agnarsson, B, Offit, K, Kirchhoff, T, Vijai, J, Dutra Clarke, A, Przybylo, J, Montagna, M, Casella, C, Imyanitov, E, Janavicius, R, Blanco, I, Lázaro, C, Moysich, K, Karlan, B, Gross, J, Beattie, M, Schmutzler, R, Wappenschmidt, B, Meindl, A, Ruehl, I, Fiebig, B, Sutter, C, Arnold, N, Deissler, H, Varon Mateeva, R, Kast, K, Niederacher, D, Gadzicki, D, Caldes, T, de la Hoya, M, Nevanlinna, H, Aittomäki, K, Simard, J, Soucy, P, Spurdle, A, Holland, H, Chenevix Trench, G, Easton, D, Antoniou, A, Faculteit Medische Wetenschappen/UMCG, Biostatistiques santé, Département biostatistiques et modélisation pour la santé et l'environnement [LBBE], Laboratoire de Biométrie et Biologie Evolutive - UMR 5558 (LBBE), Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Institut National de Recherche en Informatique et en Automatique (Inria)-VetAgro Sup - Institut national d'enseignement supérieur et de recherche en alimentation, santé animale, sciences agronomiques et de l'environnement (VAS)-Centre National de la Recherche Scientifique (CNRS)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Institut National de Recherche en Informatique et en Automatique (Inria)-VetAgro Sup - Institut national d'enseignement supérieur et de recherche en alimentation, santé animale, sciences agronomiques et de l'environnement (VAS)-Centre National de la Recherche Scientifique (CNRS)-Laboratoire de Biométrie et Biologie Evolutive - UMR 5558 (LBBE), Université de Lyon-Université de Lyon-Institut National de Recherche en Informatique et en Automatique (Inria)-VetAgro Sup - Institut national d'enseignement supérieur et de recherche en alimentation, santé animale, sciences agronomiques et de l'environnement (VAS)-Centre National de la Recherche Scientifique (CNRS), Klinische Genetica, Genetica & Celbiologie, RS: GROW - School for Oncology and Reproduction, Clinical Genetics, Pediatric Surgery, Human genetics, CCA - Oncogenesis, and Human Genetics
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Oncology ,Cancer Research ,endocrine system diseases ,Genes, BRCA2 ,Genes, BRCA1 ,Genome-wide association study ,FAMILIES ,0302 clinical medicine ,Risk Factors ,Retrospective Studie ,Genotype ,Odds Ratio ,skin and connective tissue diseases ,POPULATION ,Genetics ,Ovarian Neoplasms ,Aged, 80 and over ,Allele ,0303 health sciences ,education.field_of_study ,Likelihood Functions ,Articles ,GERMLINE MUTATIONS ,Middle Aged ,Likelihood Function ,female genital diseases and pregnancy complications ,3. Good health ,030220 oncology & carcinogenesis ,Female ,Chromosomes, Human, Pair 9 ,Human ,Adult ,[SDV.OT]Life Sciences [q-bio]/Other [q-bio.OT] ,medicine.medical_specialty ,Heterozygote ,SUSCEPTIBILITY LOCI ,PROTEINS ,Population ,Biology ,Polymorphism, Single Nucleotide ,BASONUCLIN-2 ,03 medical and health sciences ,Breast cancer ,Germline mutation ,SDG 3 - Good Health and Well-being ,Internal medicine ,medicine ,BREAST-CANCER ,Humans ,GENOME-WIDE ASSOCIATION ,education ,Alleles ,Germ-Line Mutation ,030304 developmental biology ,Retrospective Studies ,Aged ,IDENTIFICATION ,Risk Factor ,Ovarian Neoplasm ,Editorials ,Cancer ,medicine.disease ,Minor allele frequency ,Ovarian cancer - Abstract
[Background]: Germline mutations in the BRCA1 and BRCA2 genes are associated with increased risks of breast and ovarian cancers. Although several common variants have been associated with breast cancer susceptibility in mutation carriers, none have been associated with ovarian cancer susceptibility. A genome-wide association study recently identified an association between the rare allele of the single-nucleotide polymorphism (SNP) rs3814113 (ie, the C allele) at 9p22.2 and decreased risk of ovarian cancer for women in the general population. We evaluated the association of this SNP with ovarian cancer risk among BRCA1 or BRCA2 mutation carriers by use of data from the Consortium of Investigators of Modifiers of BRCA1/2. [Methods]: We genotyped rs3814113 in 10 029 BRCA1 mutation carriers and 5837 BRCA2 mutation carriers. Associations with ovarian and breast cancer were assessed with a retrospective likelihood approach. All statistical tests were two-sided. [Results]: The minor allele of rs3814113 was associated with a reduced risk of ovarian cancer among BRCA1 mutation carriers (per-allele hazard ratio of ovarian cancer = 0.78, 95% confidence interval = 0.72 to 0.85; P = 4.8 × 10-9) and BRCA2 mutation carriers (hazard ratio of ovarian cancer = 0.78, 95% confidence interval = 0.67 to 0.90; P = 5.5 × 10-4). This SNP was not associated with breast cancer risk among either BRCA1 or BRCA2 mutation carriers. BRCA1 mutation carriers with the TT genotype at SNP rs3814113 were predicted to have an ovarian cancer risk to age 80 years of 48%, and those with the CC genotype were predicted to have a risk of 33%. [Conclusion]: Common genetic variation at the 9p22.2 locus was associated with decreased risk of ovarian cancer for carriers of a BRCA1 or BRCA2 mutation., Spanish National Cancer Center (CNIO) and the Spanish Consortium: Partially supported by Fundación Mutua Madrileña, Asociación Española Contra el Cáncer, and the Spanish Ministry of Science and Innovation (FIS PI08 1120).
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- 2011
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196. SFCE CO-09 - Syndrome CMMR-D : description clinique dans une série française.
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Lavoine, N., Colas, C., Sebille, G., Cabaret, O., Charpy, C., Frébourg, T., Entz-Werle, N., Wang, Q., Lejeune, S., Leroux, D., Couillault, G., Leverger, G., Fricker, J.P., Guimbaud, R., Mathieu-Dramard, M., Bourdeaut, F., Muleris, M., Caron, O., and Brugières, L.
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Objectif décrire les caractéristiques cliniques des patients français atteints de CMMR-D. Sujet / matériels et méthodes le syndrome CMMR-D est un syndrome de prédisposition aux cancers de l’enfant dû à une mutation biallélique des gènes MMR. Il est méconnu des onco-pédiatres et probablement sous-diagnostiqué. Une revue a été menée à partir des dossiers cliniques des cas de CMMR-D diagnostiqués par des laboratoires de génétique en France de 1999 à 2013. Résultats principaux 28 patients ont développé 60 cancers, dont 17 hémopathies, 19 tumeurs cérébrales, 21 cancers du spectre du syndrome de Lynch, et 3 sarcomes. 19/28 patients ont développé plusieurs cancers. L’âge médian au diagnostic de première tumeur était 7 ans [1,23–33,53]. La survie globale à 5 ans était de 56% après le premier cancer. 40% des décès étaient liés à l’évolution de la première tumeur. 21/28 patients présentaient des taches café-au-lait ou des macules dépigmentées. L’histoire familiale évoquait un syndrome de Lynch dans 25% des familles, une consanguinité dans 1/3 des cas. Conclusion le syndrome CMMR-D prédispose à la survenue de cancers précoces et au pronostic sombre. Son diagnostic est difficile mais indispensable pour mettre en place une surveillance appropriée chez les patients et leurs apparentés. [ABSTRACT FROM AUTHOR]
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- 2014
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197. Current Management of Inherited Retinal Degeneration Patients in Europe: Results of a 2-Year Follow-Up Multinational Survey by the European Vision Institute Clinical Research Network - EVICR.net.
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Lorenz B, Tavares J, van den Born LI, Marques JP, Pilotto E, Stingl K, Charbel Issa P, Leroux D, Dollfus H, and Scholl HPN
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- Adult, Humans, Follow-Up Studies, Vision Tests, Research Design, Europe, Retinal Degeneration diagnosis, Retinal Degeneration genetics, Retinal Degeneration therapy
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Introduction: An increasing number of gene-specific therapies are being developed for inherited retinal degenerations (IRDs). Identification of well-characterized patients is an emerging need. We conducted the second multinational survey among the www.evicr.net and ERN-EYE members to understand the management and treatment of IRDs in Europe and compared it to the 2019 survey., Methods: An electronic survey questionnaire was developed and sent to 124 clinical centers (25 countries) by June/July 2021. Statistical analysis was performed with Excel and R., Results: The overall response rate was 44% but varied among countries. Only 9% of responding centers do not see IRD patients (2019 survey 14%), 42% follow at least 200 patients per year, 18% follow 500-999, and 2% more than 1,000. Databases exist in 86% of the centers (local 86%; national web based 12%). IRD patients are referred to www.evicr.net and ERN-EYE centers mainly by general ophthalmologists, patient self-referral, or medical retina specialists. Most IRD patients are first seen as adults. Signs and symptoms depend on age of onset: in infancy, nystagmus; at older age, night blindness and reduced visual field; reduced visual acuity is described at any age. Comprehensive ophthalmic examination always includes visual acuity and almost always visual field multimodal retinal imaging, electrophysiology, color vision testing, and refraction. Identification of genotypes is successful in 72% of centers in 40-80% of cases (2019 survey 69% of centers). The time for confirmation of the genetic diagnosis varies from 2-4 weeks to 24 months (2019 survey >4 weeks ≤10 years). Genetic testing is covered by public health service in 83%, private health insurance in 29%, research funds in 24%; 5% do not have access to genetic testing (2019 survey 15%). The most striking result is the high increase in the involvement of centers in natural history and gene therapy trials that more than doubled for the latter., Discussion: This second multinational survey on management of IRDs in Europe highlights persistent important differences in the number of IRD patients managed per center, comparable diagnostic work-up, and increasing genotyping in diagnostic laboratories. The important increase in involvement of centers in natural history and gene therapy trials reflects the rapidly evolving field of gene therapy development. The survey provides important follow-up data for researchers, clinicians, caregivers, patient advocate groups, pharmaceutical companies, and investors., (© 2023 The Author(s). Published by S. Karger AG, Basel.)
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- 2023
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198. Current Management of Patients with RPE65 Mutation Associated Inherited Retinal Degenerations in Europe: Results of a 2-Year Follow-Up Multinational Survey.
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Lorenz B, Tavares J, van den Born LI, Marques JP, Pilotto E, Stingl K, Charbel Issa P, Leroux D, Dollfus H, and Scholl HPN
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- Humans, Child, Preschool, Child, Adolescent, Young Adult, Adult, Middle Aged, Follow-Up Studies, Research Design, Europe, Mutation, Quality of Life, Retinal Degeneration genetics, Retinal Degeneration therapy
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Introduction: The aim of this study was to evaluate the current management of RPE65 biallelic mutation-associated inherited retinal degeneration (RPE65-IRD) in Europe since market authorization of voretigene neparvovec (VN, LuxturnaTM) in 2018. By July 2022, over 200 patients have been treated outside the USA, of whom about 90% in Europe. We conducted among all centers of the European Vision Institute Clinical Research Network www.evicr.net and health care providers (HCPs) of the European Reference Network dedicated to Rare Eye Diseases (ERN-EYE) the second multinational survey on management of IRDs in Europe elaborated by www.evicr.net with a special focus on RPE65-IRD., Methods: An electronic survey questionnaire with 48 questions specifically addressing RPE65-IRD (2019 survey 35) was developed and sent by June 2021 to 95 www.evicr.net centers and 40 ERN-EYE HCPs and affiliated members. Of note, 11 centers are members of both networks. Statistical analysis was performed with Excel and R., Results: The overall response rate was 44% (55/124); 26 centers follow RPE65 biallelic mutation-associated IRD patients. By June 2021, 8/26 centers have treated 57 RPE65-IRD cases (1-19/center, median 6) and 43 planned for treatment (range 0-10/center, median 6). The overall age range was 3-52 years, and on average 22% of the patients did not (yet) qualify for treatment (range 2-60%/center, median 15%). Main reasons were too advanced (range 0-100, median 75%) or mild disease (range 0-100, median 0). Eighty-three percent of centers (10/12) that follow RPE65 mutation-associated IRD patients treated with VN participate in the PERCEIVE registry (EUPAS31153, www.encepp.eu. Quality of life and full-field stimulus test improvements had the highest scores of the survey-reported outcome parameters in VN treatment follow-up., Conclusion: This second multinational survey on management of RPE65-IRD by www.evicr.net centers and ERN-EYE HCPs in Europe indicates that RPE65-IRD might be diagnosed more reliably in 2021 compared to 2019. By June 2021, 8/26 centers reported detailed results including VN treatment. Main reasons for non-treatment were too advanced or mild disease, followed by absence of 2 class 4 or 5 mutations on both alleles or because of a too young age. Patient satisfaction with treatment was estimated to be high by 50% of the centers., (© 2023 The Author(s). Published by S. Karger AG, Basel.)
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- 2023
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199. Low-dose interleukin-2 therapy in active systemic lupus erythematosus (LUPIL-2): a multicentre, double-blind, randomised and placebo-controlled phase II trial.
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Humrich JY, Cacoub P, Rosenzwajg M, Pitoiset F, Pham HP, Guidoux J, Leroux D, Vazquez T, Riemekasten G, Smolen JS, Tsokos G, and Klatzmann D
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- Humans, Severity of Illness Index, Immunologic Factors therapeutic use, Double-Blind Method, Treatment Outcome, Interleukin-2 therapeutic use, Lupus Erythematosus, Systemic
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Objectives: A regulatory T cell (Treg) insufficiency due to shortage of interleukin-2 (IL-2) is central to the pathophysiology of systemic lupus erythematosus (SLE). We performed a multicentre, double-blinded, randomised, placebo-controlled phase II proof-of-concept trial to evaluate the efficacy of low-dose IL-2 therapy in patients with SLE having moderate-to-severe disease activity while receiving standard treatment., Methods: We randomly assigned 100 patients in a 1:1 ratio to receive either 1.5 million IU/day of subcutaneous IL-2 (ILT-101) or placebo for 5 days followed by weekly injections for 12 weeks. Clinical efficacy was assessed at week 12 in a predefined hierarchical analysis of (1) the SLE responder index-4 (SRI-4) response as a primary end point, and of (2) relative and (3) absolute changes in the Safety of Estrogens in Lupus Erythematosus National Assessment-Systemic Lupus Erythematosus Disease Activity Index scores as key secondary end points., Results: The primary end point was not met in the intention-to-treat population (ILT-101: 68%, placebo: 58%; p=0.3439), due to a 100% SRI-4 response rate in the placebo group from the two sites from Bulgaria. A post hoc per-protocol analysis on a prespecified population that excluded patients from these two sites (n=53) showed a statistically significant difference for the SRI-4 response rate (ILT-101: 83.3%; placebo: 51.7%; p=0.0168), and for the two key secondary end points, accompanied by differences in several secondary exploratory end points. ILT-101 was well tolerated and there was no generation of antidrug antibodies., Conclusions: The post hoc hierarchical analysis of the primary and key secondary end points in a per-protocol population, complemented by the exploratory analyses of multiple other secondary end points, support that low-dose IL-2 is beneficial in active SLE., Trial Registration Number: NCT02955615., Competing Interests: Competing interests: PC, MR and DK are inventors for patents related to the therapeutic use of IL-2, which belongs to their academic institutions and have been licensed to ILTOO Pharma in which they hold interests. HPP, JG, DL and TV are employees of ILTOO Pharma., (© Author(s) (or their employer(s)) 2022. No commercial re-use. See rights and permissions. Published by BMJ.)
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- 2022
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200. SeSAM: software for automatic construction of order-robust linkage maps.
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Vidal A, Gauthier F, Rodrigez W, Guiglielmoni N, Leroux D, Chevrolier N, Jasson S, Tourrette E, Martin OC, and Falque M
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- Chromosome Mapping, Genetic Markers, Genotype, Software, Polymorphism, Single Nucleotide
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Background: Genotyping and sequencing technologies produce increasingly large numbers of genetic markers with potentially high rates of missing or erroneous data. Therefore, the construction of linkage maps is more and more complex. Moreover, the size of segregating populations remains constrained by cost issues and is less and less commensurate with the numbers of SNPs available. Thus, guaranteeing a statistically robust marker order requires that maps include only a carefully selected subset of SNPs., Results: In this context, the SeSAM software allows automatic genetic map construction using seriation and placement approaches, to produce (1) a high-robustness framework map which includes as many markers as possible while keeping the order robustness beyond a given statistical threshold, and (2) a high-density total map including the framework plus almost all polymorphic markers. During this process, care is taken to limit the impact of genotyping errors and of missing data on mapping quality. SeSAM can be used with a wide range of biparental populations including from outcrossing species for which phases are inferred on-the-fly by maximum-likelihood during map elongation. The package also includes functions to simulate data sets, convert data formats, detect putative genotyping errors, visualize data and map quality (including graphical genotypes), and merge several maps into a consensus. SeSAM is also suitable for interactive map construction, by providing lower-level functions for 2-point and multipoint EM analyses. The software is implemented in a R package including functions in C++., Conclusions: SeSAM is a fully automatic linkage mapping software designed to (1) produce a framework map as robust as desired by optimizing the selection of a subset of markers, and (2) produce a high-density map including almost all polymorphic markers. The software can be used with a wide range of biparental mapping populations including cases from outcrossing. SeSAM is freely available under a GNU GPL v3 license and works on Linux, Windows, and macOS platforms. It can be downloaded together with its user-manual and quick-start tutorial from ForgeMIA (SeSAM project) at https://forgemia.inra.fr/gqe-acep/sesam/-/releases., (© 2022. The Author(s).)
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- 2022
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