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We observed tidal currents, turbulent energy dissipation and water column stratification at the entrance of a narrow strait (Neko Seto) in the Seto Inland Sea, Japan, using a free-falling turbulent microstructure profiler (TurboMAP) and acoustic Doppler current profiler (ADCP). The variation in turbulent energy dissipation at the entrance of the strait was not at quarter-diurnal frequency but at semi-diurnal frequency; turbulent energy dissipation was enhanced during the ebb tide, although it was moderate during the flood tide. This result is consistent with the results of Takasugi (1993), which showed the asymmetry of tidal energy loss during a semidiurnal tidal cycle using control volume analysis. It is suggested that significant turbulent energy dissipation is generated in the strait, which influences the properties of water outside the strait when tidal currents flow out from the strait.

The Seto Inland Sea is a partially enclosed shallow sea with a complex bathymetry involving several basins, separated by narrow straits, and numerous islands. The influence of tidal stirring on density stratification and on the distribution of nutrients and chlorophyll in this region has been investigated using a combination of a numerical model of the tidal flow and the results of two extensive surveys of property distributions in the summer regime. The Princeton Ocean Model (POM) has been used to determine the spatial structure of the tidal flow and the results have been verified by comparison with an extensive database of current and elevation measurements. The model indicates a large difference in total energy flux between the western entrance section, which is controlled by a progressive wave regime, and the eastern entrance section which is associated with a predominantly standing wave regime. The combined energy flux input matches the total energy dissipation for the M2 in the Inland Sea which is found to be ∼3.4×109 W. Two ship surveys in August 2002 and 2003 along a central section show a highly differentiated pattern of vertical structure. The potential energy anomaly ϕ, an index of vertical stability based on density, exhibits a marked inverse correlation with tidal energy dissipation View the MathML source thus confirming the control of stratification by tidal stirring. In most straits, vertical differences of nutrients and chlorophyll are small or negligible while in the low-energy basins there are pronounced vertical differences associated with density stratification. These sluggish basins exhibit oligotrophic conditions in the surface layer but large nitrate concentrations below the pycnocline and significant chlorophyll maxima in subsurface layer. The physical pattern of varying stratification and fronts is reflected to a considerable degree in the distributions of biochemical properties.

We systematically analyze the prompt emission and the early afterglow data of a sample of 31 GRBs detected by {\em Swift} before September 2005, and estimate the GRB radiative efficiency. BAT's narrow band inhibits a precise determination of the GRB spectral parameters, and we have developed a method to estimate these parameters with the hardness ratio information. The shallow decay component commonly existing in early X-ray afterglows, if interpreted as continuous energy injection in the external shock, suggests that the GRB efficiency previously derived from the late-time X-ray data were not reliable. We calculate two radiative efficiencies using the afterglow kinetic energy E_K derived at the putative deceleration time t_{dec}) and at the break time (t_b) when the energy injection phase ends, respectively. At t_b XRFs appear to be less efficient than normal GRBs. However, when we analyze the data at t_{dec} XRFs are found to be as efficient as GRBs. Short GRBs have similar radiative efficiencies to long GRBs despite of their different progenitors. Twenty-two bursts in the sample are identified to have the afterglow cooling frequency below the X-ray band. Assuming \epsilon_e = 0.1, we find \eta_\gamma(t_b) usually <10% and \eta_\gamma (t_{dec}) varying from a few percents to > 90%. Nine GRBs in the sample have the afterglow cooling frequency above the X-ray band for a very long time. This suggests a very small \epsilon_B and/or a very low ambient density n., Comment: 43 pages, 10 figures, ApJ, in press

We discuss the reference time t_0 of afterglow light curves in the context of the standard internal-external shock model. The decay index of early afterglow is very sensitive to the reference time one chooses. In order to understand the nature of early afterglow, it is essential to take a correct reference time. Our simple analytic model provides a framework to understand special relativistic effects involved in early afterglow phase. We evaluate light curves of reverse shock emission as well as those of forward shock emission, based on full hydrodynamic calculations. We show that the reference time does not shift significantly even in the thick shell case. For external shock emission components, measuring times from the beginning of the prompt emission is a good approximation and it does not cause an early steep decay. In the thin shell case, the energy transfer time from fireball ejecta to ambient medium typically extends to thousands of seconds. This might be related to the shallow decay phases observed in early X-ray afterglow at least for some bursts., Comment: 22 pages, 7 figures, accepted for publication in ApJ

The unique capability of the Swift satellite to perform a prompt and autonomous slew to a newly detected Gamma-Ray Burst (GRB) has yielded the discovery of interesting new properties of GRB X-ray afterglows, such as the steep early lightcurve decay and the frequent presence of flares detected up to a few hours after the GRB trigger. We present observations of GRB 050607, the fourth case of a GRB discovered by Swift with flares superimposed on the overall fading X-ray afterglow. The flares of GRB 050607 were not symmetric as in previously reported cases, showing a very steep rise and a shallower decay, similar to the Fast Rise, Exponential Decay that are frequently observed in the gamma-ray prompt emission. The brighter flare had a flux increase by a factor of approximately 25,peaking for 30 seconds at a count rate of approximately 30 counts s-1, and it presented hints of addition short time scale activity during the decay phase. There is evidence of spectral evolution during the flares. In particular, at the onset of the flares the observed emission was harder, with a gradual softening as each flare decayed. The very short time scale and the spectral variability during the flaring activity are indicators of possible extended periods of energy emission by the GRB central engine. The flares were followed by a phase of shallow decay, during which the forward shock was being refreshed by a long-lived central engine or by shells of lower Lorentz factors, and by a steepening after approximately 12 ks to a decay slope considered typical of X-ray afterglows., Comment: 23 pages, 5 figures, Accepted by the Astrophysical Journal

We estimate the high energy neutrino flux from the giant flare of SGR 1806-20 on December 27, 2004, which irradiated Earth with a gamma-ray flux ~10^4 times larger than the most luminous gamma-ray bursts (GRBs) ever detected. The Antarctic Cherenkov neutrino detector AMANDA was on-line during the flare, and may either have detected high energy neutrinos for the first time from a cosmic point source, or put constraints on the flare mechanism of magnetars. If TeV neutrinos are detected, one would expect also detectable EeV cosmic rays and possibly TeV gamma-ray emission in coincidence., Comment: 11 pages, 1 figure, accepted for publication in ApJ

(Abridged) The Swift X-Ray Telescope (XRT) reveals some interesting features of early X-ray afterglows, including a distinct rapidly decaying component preceding the conventional afterglow component in many sources, a shallow decay component before the more ``normal'' decay component observed in a good fraction of GRBs (e.g. GRB 050128, GRB 050315, GRB 050319, and GRB 050401), and X-ray flares in nearly half of the afterglows (e.g. GRB 050406, GRB 050502B, GRB 050607, and GRB 050724). In this paper, we systematically analyze the possible physical processes that shape the properties of the early X-ray afterglow lightcurves, and use the data to constrain various models. We suggest that the steep decay component is consistent with the tail emission of the prompt gamma-ray bursts and/or of the X-ray flares. This provides clear evidence that the prompt emission and afterglow emission are two distinct components, supporting the internal origin of the GRB prompt emission. The shallow decay segment observed in a group of GRBs suggests that the forward shock keeps being refreshed for some time. This might be caused either by a long-lived central engine, or by a power law distribution of the shell Lorentz factors, or else by the deceleration of a Poynting flux dominated flow. X-ray flares suggest that the GRB central engine is still active after the prompt gamma-ray emission is over, but with a reduced activity at later times. In some cases, the central engine activity even extends days after the burst trigger. Analyses of early X-ray afterglow data reveal that GRBs are indeed highly relativistic events. Early afterglow data of many bursts, starting from the beginning of the XRT observations, are consistent with the afterglow emission from an interstellar medium (ISM) environment., Comment: emulateapj, 19 pages, ApJ, in press. Conclusions unchanged

We study synchrotron self-inverse Compton radiation from a reverse-shocked fireball. If the inverse Compton process dominates the cooling of shocked electrons, an X-ray flare produced by the first order Compton scattering would emerge in the very early afterglow phase, with the bulk of the shock energy radiated in the second order scattering component at 10-100 MeV. The dominance of inverse Compton cooling leads to the lack of prompt optical flashes. We show that for plausible parameters this scattering process can produce an X-ray flare with a relative amplitude change by a factor of several. Flares with a larger amplitude and multiple X-ray flares in a single event are likely to be produced by another mechanism (e.g. internal shocks)., Comment: 14 pages, 3 figures, accepted for publication in ApJ

Lyutikov (astro-ph/0503505) raised a valid point that for shock deceleration of a highly magnetized outflow, the fate of the magnetic fields after shock crossing should be considered. However, his comment that the deceleration radius should be defined by the total energy rather than by the baryonic kinetic energy is incorrect. As strictly derived from the shock jump conditions in Zhang & Kobayashi (2005), during the reverse shock crossing process the magnetic energy is not tapped. As a result, the fireball deceleration radius is defined by the baryonic energy only. The magnetic energy is expected to be transferred to the circumburst medium after the reverse shock disappears. The evolution of the system then mimicks a continuously-fed fireball. As a result, Lyutikov's naive conclusion that the forward shock dynamics is independent on the ejecta content is also incorrect. The shock deceleration dynamics and the reverse shock calculation presented in Zhang & Kobayashi (2005) are robust and correct., Comment: 4 pages

The Swift Gamma-Ray Burst Explorer, launched on 2004 November 20, is a multiwavelength, autonomous, rapid-slewing observatory for gamma-ray burst (GRB) astronomy. On 2004 December 23, during the activation phase of the mission, the Swift X-Ray Telescope (XRT) was pointed at a burst discovered earlier that day by the Swift Burst Alert Telescope. A fading, uncataloged X-ray source was discovered by the XRT and was observed over a period of about 3 hours, beginning 4.6 hours after the burst. The X-ray detection triggered a VLT observation of the optical/NIR counterpart, located about 1.1 arcseconds from the XRT position. The X-ray counterpart faded rapidly, with a power law index of -1.72 +/- 0.20. The average unabsorbed X-ray flux 4.6-7.9 hours after the burst was 6.5 x 10^{-12} erg cm^{-2} s^{-1} in the 0.5-10 keV band, for a power-law spectrum of photon index 2.02 +/- 0.13 with Galactic absorption. The NIR counterpart was observed at three epochs between 16 and 87 hours after the burst, and faded with a power-law index of -1.14 +/- 0.08 with a reddening-corrected SED power-law slope of -0.40 +/- 0.03. We find that the X-ray and NIR data are consistent with a two-component jet in a wind medium, with an early jet break in the narrow component and an underlying electron index of 1.8-2.0., Comment: 16 pages, including 4 figures. Accepted by Astrophysical Journal (Letters) on 15 February 2005

We review recent progress in understanding the hydrodynamics of compact binary mergers using relativistic smoothed particle hydrodynamics (SPH) codes. Recent results are discussed for both double neutron stars and black hole - neutron star binaries. The gravitational wave signals from these mergers contain a lot of information about the masses and radii of the stars and the equation of state of the neutron star fluid. For black hole - neutron star mergers, the final fate of the fluid and the gravitational wave emission depend strongly on the mass ratio and the black hole spin., Comment: 12 pages, to appear in proceedings of JGRG14 (Yukawa Institute for Theoretical Physics, Kyoto, Japan, Nov 29 - Dec 3, 2004)

Gravitational waves and X-ray flares are expected from tidal disruption of stars by a massive black hole. Using a relativistic smoothed particle hydrodynamics code, we investigate the fate of main sequence and Helium stars in plunge orbits passing near Schwarzschild or a Kerr black holes of 10^5-6 Msun. We show that quadrupole gravitational waves emitted during the tidal disruption process are described reasonable well by a point particle approximation even in the strong encounter case. An additional hydrodynamic calculation based on the Godunov method indicates that shocks develop for sufficiently high tidal compressions. The shock-heating results in an X-ray flare, which for solar-type stars disrupted by 10^6Msun black holes is in the keV range, associated with the gravitational wave signal. The hardness and duration of the X-ray flare may serve as a diagnostic of the mass of the central black hole., Comment: 27 pages, 10 figures, accepted for publication in ApJ, additional hydrodynamic calculation on shock development for high tidal compression

We investigate the high-energy photon emission around Gamma-Ray Burst (GRB) remnants caused by ultrahigh-energy cosmic rays (UHECRs) from the GRBs. We apply the results to the recent report that the supernova remnant W49B is a GRB remnant in our Galaxy. If this is correct, and if GRBs are sources of UHECRs, a natural consequence of this identification would be a detectable TeV photon emission around the GRB remnant. The imaging of the surrounding emission could provide new constraints on the jet structure of the GRB., Comment: 12 pages, 2 figures, accepted for publication in ApJL

We investigate the role of the bulk Compton-scattering process in the internal shock model. We numerically show that the radiation field created by internal shocks does not affect the efficiency of the energy conversion in the shocks even if fireball outflows have highly nonuniform velocity distributions. However, the bulk Compton-scattering produces an additional high energy component especially when variability in the outflows arises because of a modulation of the mass injected into a constant energy flow. We show that an isotropic energy of $10^{50-51}$ ergs could be radiated in the range of 100MeV-GeV through the scattering process, provided that the shell's Lorentz factor varies between 10 and $10^4$., Comment: 12 pages, 2 figures, 2 tables, accepted for publication in ApJL

Short-duration Gamma-ray bursts (GRBs) (\leq 2{\rm s}) have remained a mystery due to the lack of afterglow detection until recently. The models to interpret short GRBs invoke distinct progenitor scenarios. Here we present a generic analysis of short GRB afterglows, and calculate the optical lightcurves of short GRBs within the framework of different progenitor models. We show that all these optical afterglows are bright enough to be detected by the Ultraviolet and Optical Telescope (UVOT) on board the {\em Swift} observatory, and that different models could be distinguished with a well-monitored lightcurve. We also model the afterglow data of the recently discovered short burst GRB 040924. We find that the limited data are consistent with a low medium density environment which is consistent with the pre-concept of the compact-star merger progenitor model, although the models with a collapsar progenitor are not ruled out., Comment: 6 pages (3 figures), expanded version accepted for publication in ApJ

We show that simple kinematic arguments can give limits on the timescale and amplitude of variabilities in gamma-ray burst (GRB) afterglows, especially when the variability timescale is shorter than the observed time since the burst \Delta t < t. These limits help us to identify the sources of afterglow variability. The afterglows of GRB 011211 and GRB 021004 marginally violate these limits. If such violation is confirmed by the Swift satellite, a possible explanation is that (1) the compact objects that power GRB jets continue to eject an intermittent outflow for a very long timescale (> 1 day), (2) the GRB jet from the central engine has a temporal anisotropy with a large brightness contrast > 10 and small angular structure < 10^{-2}, or (3) many (> 10^{3}) regions fluctuate simultaneously in the emitting site., Comment: 13 pages, 1 figure, accepted for publication in ApJ

Evidence suggests that the gamma-ray burst (GRB) ejecta is likely magnetized, although the degree of magnetization of the ejecta is unknown. We derive a rigorous analytical solution for the relativistic 90 degree shocks under the ideal MHD condition, and use them to study the reverse shock emission properties of an arbitrarily magnetized ejecta. Contrary to the previous belief, we find that strong relativistic shocks still exist in the high-sigma limit. Assuming a constant density of the circumburst medium, we study the shell-medium interaction in detail and categorize various critical radii for shell evolution. With typical GRB parameters, a reverse shock exists when sigma is less than a few tens or a few hundreds. The shell evolution can be still categorized into the thick and thin shell regimes, but the separation between the two regime now depends on sigma and the thick shell regime greatly shrinks at high-sigma. The early optical afterglow lightcurves are calculated for GRBs with a wide range of the sigma values. We find that the reverse shock emission level increases steadily with sigma initially, but starts to decline when sigma becomes larger than unity. In the high-sigma regime the reverse shock peak is usually broadened due to the separation of the shock crossing radius and the deceleration radius in the thin shell regime. The early afterglow data and tight upper limits of known GRBs could be understood within the theoretical framework developed in this paper, with the inferred sigma value varying in a wide range., Comment: Updated to match the version to appear in ApJ

Two separate topics are discussed. (1) We describe the classifications of the long GRB early afterglow lightcurves within the framework of the fireball shock model, focusing on the interplay between the reverse and forward shock emission components. We will also provide evidence that the central engine of at least two bursts are entrained with strong magnetic fields, and discuss the implications of this result for our understanding of the GRB phenomenon; (2) We argue that the current gamma-ray burst (GRB) and X-ray flash (XRF) data are consistent with a picture that all GRB-XRF jets are structured and quasi-universal, with a typical Gaussian-like jet structure., Comment: 5 pages, 8 figures, to appear in the Proceedings of Santa Fe GRB Conference (talk by Zhang at the meeting)

We discuss the effects of synchrotron self-absorption in the prompt emission from the reverse shock of GRB afterglows occurring in a dense environment, such as the wind of a massive stellar progenitor or a dense ISM in early galaxies. We point out that, when synchrotron losses dominate over inverse Compton losses, the higher self-absorption frequency in a dense environment implies a bump in the reverse shock emission spectrum, which can result in a more complex optical/IR light curve than previously thought. This bump is prominent especially if the burst ejecta is highly magnetized. In the opposite case of low magnetization, inverse Compton losses lead to a prompt X-ray flare. These effects give a possible new diagnostic for the magnetic energy density in the fireball, and for the presence of a dense environment., Comment: 11 pages, 2 figures, slightly expanded version of ApJL accepted paper

We study prompt optical emission from reverse shocks in the wind-type gamma-ray bursts. The emission is evaluated in both the thick and thin shell regimes. We discuss the angular time delay effect and the post-shock evolution of the fireball ejecta, which determine the decay index of the prompt optical emission and the duration of the radio flare. We discuss distinct emission signatures of the wind environment compared with the constant interstellar medium environment. We also present two recipes for directly constraining the initial or early time Lorentz factor of the fireball using the reverse and forward shock optical afterglow data for the wind case., Comment: 11 pages, 1 figure, accepted for publication in ApJ

Early optical afterglows have been observed from GRB 990123, GRB 021004, and GRB 021211, which reveal rich emission features attributed to reverse shocks. It is expected that Swift will discover many more early afterglows. Here we investigate in a unified manner both the forward and the reverse external shock emission components, and introduce a straightforward recipe for directly constraining the initial Lorentz factor of the fireball using early optical afterglow data. The scheme is largely independent of the shock microphysics. We identify two types of combinations of the reverse and forward shock emission, and explore their parameter regimes. We also discuss a possible diagnostic for magnetized ejecta. There is evidence that the central engine of GRB 990123 is strongly magnetized., Comment: emulateapj style, 6 pages, 1 figure. Expanded version accepted for publication in ApJ Part 1

Significant gravitational wave emission is expected from gamma-ray bursts arising from compact stellar mergers, and possibly also from bursts associated with fast-rotating massive stellar core collapses. These models have in common a high angular rotation rate, and observations provide evidence for jet collimation of the photon emission, with properties depending on the polar angle, which may also be of relevance for X-ray flashes. Here we consider the gravitational wave emission and its polarization as a function of angle which is expected from such sources. We discuss possible correlations between the burst photon luminosity, or the delay between gravitational wave bursts and X-ray flashes, and the polarization degree of the gravitational waves., Comment: 10 pages, 1 figure, accepted for publication in ApJL

We numerically study the evolution of an adiabatic relativistic fireball interacting with an ambient uniform medium, both in the initial energy transfer stage and in its late evolution. It is shown that the Blandford-McKee solution adequately describes the evolution of the shocked ejecta quite early on and for as long as the fire-ball material has relativistic temperatures. In the case where the reverse shock is only mildly relativistic, the shocked ejecta becomes cold almost immediately and the evolution deviates from the Blandford-McKee solution. We derive analytical expressions for the ejecta evolution in its cold regime. This solution gives a good approximation to the numerical results. We estimate the radiation from the fireball ejecta using the numerical hydrodynamic evolution in both cases: cold and hot ejecta. Surprisingly, we find that both evolutions give rather similar light curves, decaying approximately as t^–2 in the optical and peaking after about one day in the radio, even though the hydrodynamics is different.