151. Crosslinking of proteins to DNA in human nuclei using a 60 femtosecond 266 nm laser.
- Author
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Lejnine S, Durfee G, Murnane M, Kapteyn HC, Makarov VL, and Langmore JP
- Subjects
- Base Sequence, Cell Line, Cell Nucleus genetics, Cell Nucleus radiation effects, Centrifugation, Density Gradient, DNA analysis, DNA genetics, DNA Damage genetics, DNA Damage radiation effects, DNA Restriction Enzymes metabolism, DNA, Ribosomal analysis, DNA, Ribosomal genetics, DNA, Ribosomal metabolism, DNA-Binding Proteins analysis, Dose-Response Relationship, Radiation, Histones analysis, Histones metabolism, Humans, Kinetics, Ku Autoantigen, Micrococcal Nuclease metabolism, Nuclear Proteins analysis, Precipitin Tests, Protein Binding, Telomere genetics, Telomere metabolism, Antigens, Nuclear, Cell Nucleus metabolism, DNA metabolism, DNA Helicases, DNA-Binding Proteins metabolism, Lasers, Nuclear Proteins metabolism
- Abstract
We developed appropriate conditions to use a laser with 60 femtosecond pulses, a frequency of 1 KHz and a wavelength of 266 nm to efficiently crosslink proteins to DNA in human nuclei for the purpose of using immunoprecipitation to study the binding of specific proteins to specific sequences of DNA under native conditions. Irradiation of nuclei for 30 min with 1-3 GW/cm(2)pulses crosslinked 10-12% of total protein to DNA. The efficiency of crosslinking was dose and protein specific. Histones H1 and H3 were crosslinked by 15 min of irradiation with 20-25% efficiency, at least 10 times more strongly than the other histones, consistent with experiments using conventional UV light. Irradiation for 15 min did not damage proteins, as assayed by SDS-PAGE of Ku-70 and histones. Although the same level of irradiation did not cause double-strand breaks, it did make the DNA partially insensitive to Eco RI restriction enzyme, probably through formation of thymidine dimers. Immuno-analysis of crosslinked nucleoprotein showed that Ku crosslinking to nuclear DNA is detectable only in the presence of breaks in the DNA, and that nucleosomes are bound to a significant fraction of the telomeric repeat (TTAGGG) (n).
- Published
- 1999
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