377,950 results on '"Joyce AS"'
Search Results
152. Comprehensive review of depression detection techniques based on machine learning approach
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Pinto, Smitha Joyce and Parente, Mimmo
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- 2024
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153. Association of Changes in A1C Following Continuous Glucose Monitoring Acquisition in People with Sub-Optimally Treated Type 2 Diabetes Taking GLP-1 RA Therapy
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Miller, Eden, Chuang, Joyce S., Roberts, Gregory J., Nabutovsky, Yelena, Virdi, Naunihal, and Wright, Jr., Eugene E.
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- 2024
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154. A sub-pharmacological test dose does not predict individual docetaxel exposure in prostate cancer patients
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Heerma van Voss, Marise R, Notohardjo, Jessica, van Dodewaard-de Jong, Joyce, Bloemendal, Haiko J, and ter Heine, Rob
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- 2024
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155. The Role of Neoadjuvant Immunotherapy in the Management of Merkel Cell Carcinoma with Clinically Detected Regional Lymph Node Metastasis
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Chang, Jenny H., Remulla, Daphne, Wehrle, Chase, Woo, Kimberly P., Dahdaleh, Fadi S., Joyce, Daniel, and Naffouje, Samer A.
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- 2024
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156. Does MBCT Affect Psychodynamic Defense Mechanisms and Self-Rated Mindfulness in Older Adults?
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Chintha, Soham, Escobar, Sophia, Nassim, Marouane, Nazar, Rim, Wu, Joyce, Gloeckler, Sara G., Cinalioglu, Karin, Torres-Platas, Susana G., and Rej, Soham
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- 2024
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157. Predicting mortality of cancer patients using artificial intelligence, patient data and blood tests
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Martins, Tiago D., Maciel-Filho, Rubens, Montalvão, Silmara A. L., Gois, Gabriele S. S., Al Bannoud, Mohamad, Ottaiano, Gabriel Y., Anhaia, Thaizy R. A., Almeida, Millene E. A., Ferreira, Monique R. M., Martinelli, Beatriz M., Fernandes, Maria C. G. L., Huber, Stephany C., Ribeiro, Daniel, Teixeira, Júlio C., Carvalheira, José B. C., Lima, Carmen S. P., Andreollo, Nelson A., Etchebehere, Maurício, Zambon, Lair, Ferreira, Ubirajara, Tincani, Alfio J., Martins, Antônio S., Coy, Cláudio S. R., Seabra, José C. T., Mussi, Ricardo K., Tedeschi, Helder, and Anninchino-Bizzacchi, Joyce M.
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- 2024
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158. Trends in Use and Evidence of Adherence to Risk Evaluation and Mitigation Strategy Pregnancy Testing Requirements for Thalidomide, Lenalidomide, and Pomalidomide in the USA, 2000–2020
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Mahesri, Mufaddal, Sarpatwari, Ameet, Huybrechts, Krista F., Lii, Joyce, Lee, Su Been, Toyserkani, Gita A., LaCivita, Cynthia, Zhou, Esther H., Dal Pan, Gerald J., Kesselheim, Aaron S., and Bykov, Katsiaryna
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- 2024
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159. Characteristics and associations of ocular and non-ocular manifestations of shaken baby syndrome
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Lin, Kira, Khan, Sabine S., Truong, Timothy, Parsikia, Afshin, and Mbekeani, Joyce N.
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- 2024
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160. Effect of low-volume combined aerobic and resistance high-intensity interval training on vascular health in people with type 2 diabetes: a randomised controlled trial
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Cox, Emily R., Gajanand, Trishan, Keating, Shelley E., Hordern, Matthew D., Burton, Nicola W., Green, Daniel J., Ramos, Joyce S., Ramos, Maximiano V., Fassett, Robert G., Cox, Stephen V., Coombes, Jeff S., and Bailey, Tom G.
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- 2024
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161. Efficacy and safety of the implantation of a single-piece angulated foldable IOL in the sulcus
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Blanckaert, Gauthier, Van Calster, Joachim, Jansen, Joyce, Vander Mijnsbrugge, Joris, Delbecq, Ann-Laure, De Clerck, Ivo, Fils, Jean-François, and Stalmans, Peter
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- 2024
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162. Immunomodulation and Humoral Immune Response in Teleost Immunized with Aeromonas-Derived Antigenic Extracellular Bioactive Molecules
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Fatsi, Patrick Senam Kofi, Kawai, Koichiro, Asmah, Ruby, Oppong, Betty Bandoh, Appiah, Ebenezer Koranteng, Hashem, Shaharior, Addo, Acheampong, Kusorgbor, Joyce Kplorla, Magna, Emmanuel Kaboja, Obeng, Abraham Kusi, Quansah, Lydia, Saba, Courage Kosi Setsoafia, Bawah, Juliana, Setufe, Seyramsarah Blossom, Adu-Nti, Frank, Ameworwor, Miriam Yayra, Quansah, Clara Ruth, Saito, Hidetoshi, Johnson-Ashun, Mercy, Osei, Lilly Konadu, Agbeko, Etornyo, Anani, Francis Assogba, and Agyakwah, Seth Koranteng
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- 2024
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163. Sodium percarbonate: an alternative oxidizing agent applied for the degradation of amoxicillin antibiotic in wastewaters using advanced oxidation processes
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de Oliveira, Isaac Henrique Molina, Fantinati, Letícia, de Carvalho, Joyce Ferreira, Ribeiro, Kátia, and de Moraes, José Ermirio Ferreira
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- 2024
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164. Is AJCC/UICC Staging Still Appropriate for Head and Neck Cancers in Developing Countries?
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Johannes J. Fagan MBChB, MMed, FCS, Julie Wetter MBChB, MMed, FCRadOnc, Jeffrey Otiti MBCHB, MMed, Joyce Aswani MBChB, MMed, Anna Konney MD, FWACS, FGCPS, Evelyne Diom, Kenneth Baidoo MD, FWACS, FGCS, Paul Onakoya MBBS, Rajab Mugabo MMed, Patrick Noah MBBS, FCS, Victor Mashamba MD, MMed, Innocent Kundiona MBChB, MMed, Chege Macharia MBChB, FCS, Mohammed Garba Mainasara MBBS, PGDM, FWACS, Melesse Gebeyehu MD, Mesele Bogale MD, Khaled Twier MMed, FCS, Marco Faniriko MD, FCS, Getachew Beza Melesse MD, and Mark G. Shrime MD, PhD, MPH
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Otorhinolaryngology ,RF1-547 ,Surgery ,RD1-811 - Abstract
By 2030, 70% of cancers will occur in developing countries. Head and neck cancers are primarily a developing world disease. While anatomical location and the extent of cancers are central to defining prognosis and staging, the American Joint Committee on Cancer (AJCC)/International Union Against Cancer (UICC) have incorporated nonanatomic factors that correlate with prognosis into staging (eg, p16 status of oropharyngeal cancers). However, 16 of 17 head and neck surgeons from 13 African countries cannot routinely test for p16 status and hence can no longer apply AJCC/UICC staging to oropharyngeal cancer. While the AJCC/UICC should continue to refine staging that best reflects treatment outcomes and prognosis by incorporating new nonanatomical factors, they should also retain and refine anatomically based staging to serve the needs of clinicians and their patients in resource-constrained settings. Not to do so would diminish their global relevance and in so doing also disadvantage most of the world’s cancer patients.
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- 2020
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165. Perspectives of Challenges in Counseling for Congenital Heart Defects
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Woo, Joyce L., Gandhi, Rupali, Burton, Shelvonne, Sivakumar, Adithya, Spiewak, Sarah, Wakulski, Renee, Grobman, William A., Davis, Matthew M., Patel, Angira, Johnson, Joyce T., Samples, Stefani, and Yee, Lynn M.
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- 2024
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166. Exploring the Phenomenon of Hope in Adult Illiterate Haitians
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Grissom, Donita, Nutta, Joyce, Crevecoeur-Bryant, Edwidge, and Roberts, Sherron Killingsworth
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Snyder's hope theory depicts hope, through the frame of positive psychology, as a cognitive construct with the perceived sense of goal-directed, pathways, and agency thinking (Snyder et al., 1991). Hope levels have been measured in various countries; however, no research to date focused on Haitians. This study, conducted in Petit-Goâve, Haiti, addressed this gap by investigating hope, pathway, and agency levels derived from 135 Haitian-Kreyol adult literacy course participants. This manuscript reports scores of illiterate Haitians' hope levels utilizing Snyder's Adult Hope Dispositional Scale; the scores are explained by Snyder's hope theory taking Haitian cultural and social landscapes into account. Despite the challenging environment and illiterate conditions, Haitian participants reported just below average hope levels, average pathway levels, and low agency levels. These findings suggested this population garnered hope in their everyday lives, despite difficult obstacles.
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- 2023
167. Metasurface spectrometers beyond resolution-sensitivity constraints
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Tang, Feng, Wu, Jingjun, Albrow-Owen, Tom, Cui, Hanxiao, Chen, Fujia, Shi, Yaqi, Zou, Lan, Chen, Jun, Guo, Xuhan, Sun, Yijun, Luo, Jikui, Ju, Bingfeng, Huang, Jing, Liu, Shuangli, Li, Bo, Yang, Liming, Munro, Eric Anthony, Zheng, Wanguo, Joyce, Hannah J., Chen, Hongsheng, Che, Lufeng, Dong, Shurong, Hasan, Tawfique, Ye, Xin, Yang, Yihao, and Yang, Zongyin
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Physics - Optics ,Condensed Matter - Materials Science - Abstract
Optical spectroscopy plays an essential role across scientific research and industry for non-contact materials analysis1-3, increasingly through in-situ or portable platforms4-6. However, when considering low-light-level applications, conventional spectrometer designs necessitate a compromise between their resolution and sensitivity7,8, especially as device and detector dimensions are scaled down. Here, we report on a miniaturizable spectrometer platform where light throughput onto the detector is instead enhanced as the resolution is increased. This planar, CMOS-compatible platform is based around metasurface encoders designed to exhibit photonic bound states in the continuum9, where operational range can be altered or extended simply through adjusting geometric parameters. This system can enhance photon collection efficiency by up to two orders of magnitude versus conventional designs; we demonstrate this sensitivity advantage through ultra-low-intensity fluorescent and astrophotonic spectroscopy. This work represents a step forward for the practical utility of spectrometers, affording a route to integrated, chip-based devices that maintain high resolution and SNR without requiring prohibitively long integration times.
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- 2024
168. GROUNDHOG: Grounding Large Language Models to Holistic Segmentation
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Zhang, Yichi, Ma, Ziqiao, Gao, Xiaofeng, Shakiah, Suhaila, Gao, Qiaozi, and Chai, Joyce
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Computer Science - Computer Vision and Pattern Recognition ,Computer Science - Artificial Intelligence ,Computer Science - Computation and Language - Abstract
Most multimodal large language models (MLLMs) learn language-to-object grounding through causal language modeling where grounded objects are captured by bounding boxes as sequences of location tokens. This paradigm lacks pixel-level representations that are important for fine-grained visual understanding and diagnosis. In this work, we introduce GROUNDHOG, an MLLM developed by grounding Large Language Models to holistic segmentation. GROUNDHOG incorporates a masked feature extractor and converts extracted features into visual entity tokens for the MLLM backbone, which then connects groundable phrases to unified grounding masks by retrieving and merging the entity masks. To train GROUNDHOG, we carefully curated M3G2, a grounded visual instruction tuning dataset with Multi-Modal Multi-Grained Grounding, by harvesting a collection of segmentation-grounded datasets with rich annotations. Our experimental results show that GROUNDHOG achieves superior performance on various language grounding tasks without task-specific fine-tuning, and significantly reduces object hallucination. GROUNDHOG also demonstrates better grounding towards complex forms of visual input and provides easy-to-understand diagnosis in failure cases., Comment: Accepted to CVPR 2024. Website: https://groundhog-mllm.github.io/
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- 2024
169. RAM-EHR: Retrieval Augmentation Meets Clinical Predictions on Electronic Health Records
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Xu, Ran, Shi, Wenqi, Yu, Yue, Zhuang, Yuchen, Jin, Bowen, Wang, May D., Ho, Joyce C., and Yang, Carl
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Computer Science - Computation and Language ,Computer Science - Artificial Intelligence ,Computer Science - Information Retrieval ,Quantitative Biology - Other Quantitative Biology - Abstract
We present RAM-EHR, a Retrieval AugMentation pipeline to improve clinical predictions on Electronic Health Records (EHRs). RAM-EHR first collects multiple knowledge sources, converts them into text format, and uses dense retrieval to obtain information related to medical concepts. This strategy addresses the difficulties associated with complex names for the concepts. RAM-EHR then augments the local EHR predictive model co-trained with consistency regularization to capture complementary information from patient visits and summarized knowledge. Experiments on two EHR datasets show the efficacy of RAM-EHR over previous knowledge-enhanced baselines (3.4% gain in AUROC and 7.2% gain in AUPR), emphasizing the effectiveness of the summarized knowledge from RAM-EHR for clinical prediction tasks. The code will be published at \url{https://github.com/ritaranx/RAM-EHR}., Comment: ACL 2024 (Oral)
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- 2024
170. Initial Indications of Safety of Driverless Automated Driving Systems
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Chen, Jiayu Joyce and Shladover, Steven E.
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Computer Science - Computers and Society ,Electrical Engineering and Systems Science - Systems and Control - Abstract
As driverless automated driving systems (ADS) start to operate on public roads, there is an urgent need to understand how safely these systems are managing real-world traffic conditions. With data from the California Public Utilities Commission (CPUC) becoming available for Transportation Network Companies (TNCs) operating in California with and without human drivers, there is an initial basis for comparing ADS and human driving safety. This paper analyzes the crash rates and characteristics for three types of driving: Uber ridesharing trips from the CPUC TNC Annual Report in 2020, supervised autonomous vehicles (AV) driving from the California Department of Motor Vehicles (DMV) between December 2020 and November 2022, driverless ADS pilot (testing) and deployment (revenue service) program from Waymo and Cruise between March 2022 and August 2023. All of the driving was done within the city of San Francisco, excluding freeways. The same geographical confinement allows for controlling the exposure to vulnerable road users, population density, speed limit, and other external factors such as weather and road conditions. The study finds that supervised AV has almost equivalent crashes per million miles (CPMM) as Uber human driving, the driverless Waymo AV has a lower CPMM, and the driverless Cruise AV has a higher CPMM than Uber human driving. The data samples are not yet large enough to support conclusions about whether the current automated systems are more or less safe than human-operated vehicles in the complex San Francisco urban environment.
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- 2024
171. Language-Based User Profiles for Recommendation
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Zhou, Joyce, Dai, Yijia, and Joachims, Thorsten
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Computer Science - Computation and Language ,Computer Science - Human-Computer Interaction ,Computer Science - Information Retrieval ,Computer Science - Machine Learning - Abstract
Most conventional recommendation methods (e.g., matrix factorization) represent user profiles as high-dimensional vectors. Unfortunately, these vectors lack interpretability and steerability, and often perform poorly in cold-start settings. To address these shortcomings, we explore the use of user profiles that are represented as human-readable text. We propose the Language-based Factorization Model (LFM), which is essentially an encoder/decoder model where both the encoder and the decoder are large language models (LLMs). The encoder LLM generates a compact natural-language profile of the user's interests from the user's rating history. The decoder LLM uses this summary profile to complete predictive downstream tasks. We evaluate our LFM approach on the MovieLens dataset, comparing it against matrix factorization and an LLM model that directly predicts from the user's rating history. In cold-start settings, we find that our method can have higher accuracy than matrix factorization. Furthermore, we find that generating a compact and human-readable summary often performs comparably with or better than direct LLM prediction, while enjoying better interpretability and shorter model input length. Our results motivate a number of future research directions and potential improvements., Comment: 8 pages (4 in appendix), 22 tables/figures (16 in appendix). Accepted to LLM-IGS@WSDM2024 workshop, now sharing this slightly updated revision version with workshop
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- 2024
172. Multimodal Fusion of EHR in Structures and Semantics: Integrating Clinical Records and Notes with Hypergraph and LLM
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Cui, Hejie, Fang, Xinyu, Xu, Ran, Kan, Xuan, Ho, Joyce C., and Yang, Carl
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Computer Science - Machine Learning ,Computer Science - Artificial Intelligence ,Computer Science - Computation and Language - Abstract
Electronic Health Records (EHRs) have become increasingly popular to support clinical decision-making and healthcare in recent decades. EHRs usually contain heterogeneous information, such as structural data in tabular form and unstructured data in textual notes. Different types of information in EHRs can complement each other and provide a more complete picture of the health status of a patient. While there has been a lot of research on representation learning of structured EHR data, the fusion of different types of EHR data (multimodal fusion) is not well studied. This is mostly because of the complex medical coding systems used and the noise and redundancy present in the written notes. In this work, we propose a new framework called MINGLE, which integrates both structures and semantics in EHR effectively. Our framework uses a two-level infusion strategy to combine medical concept semantics and clinical note semantics into hypergraph neural networks, which learn the complex interactions between different types of data to generate visit representations for downstream prediction. Experiment results on two EHR datasets, the public MIMIC-III and private CRADLE, show that MINGLE can effectively improve predictive performance by 11.83% relatively, enhancing semantic integration as well as multimodal fusion for structural and textual EHR data.
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- 2024
173. LogicPrpBank: A Corpus for Logical Implication and Equivalence
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Liu, Zhexiong, Zhang, Jing, Lu, Jiaying, Ma, Wenjing, and Ho, Joyce C
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Computer Science - Computation and Language ,Computer Science - Artificial Intelligence - Abstract
Logic reasoning has been critically needed in problem-solving and decision-making. Although Language Models (LMs) have demonstrated capabilities of handling multiple reasoning tasks (e.g., commonsense reasoning), their ability to reason complex mathematical problems, specifically propositional logic, remains largely underexplored. This lack of exploration can be attributed to the limited availability of annotated corpora. Here, we present a well-labeled propositional logic corpus, LogicPrpBank, containing 7093 Propositional Logic Statements (PLSs) across six mathematical subjects, to study a brand-new task of reasoning logical implication and equivalence. We benchmark LogicPrpBank with widely-used LMs to show that our corpus offers a useful resource for this challenging task and there is ample room for model improvement., Comment: In the 5th AI4ED Workshop, held in conjunction with The 38th AAAI Conference on Artificial Intelligence, February 2024
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- 2024
174. Detecting the Clinical Features of Difficult-to-Treat Depression using Synthetic Data from Large Language Models
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Lorge, Isabelle, Joyce, Dan W., Taylor, Niall, Nevado-Holgado, Alejo, Cipriani, Andrea, and Kormilitzin, Andrey
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Computer Science - Computation and Language - Abstract
Difficult-to-treat depression (DTD) has been proposed as a broader and more clinically comprehensive perspective on a person's depressive disorder where despite treatment, they continue to experience significant burden. We sought to develop a Large Language Model (LLM)-based tool capable of interrogating routinely-collected, narrative (free-text) electronic health record (EHR) data to locate published prognostic factors that capture the clinical syndrome of DTD. In this work, we use LLM-generated synthetic data (GPT3.5) and a Non-Maximum Suppression (NMS) algorithm to train a BERT-based span extraction model. The resulting model is then able to extract and label spans related to a variety of relevant positive and negative factors in real clinical data (i.e. spans of text that increase or decrease the likelihood of a patient matching the DTD syndrome). We show it is possible to obtain good overall performance (0.70 F1 across polarity) on real clinical data on a set of as many as 20 different factors, and high performance (0.85 F1 with 0.95 precision) on a subset of important DTD factors such as history of abuse, family history of affective disorder, illness severity and suicidality by training the model exclusively on synthetic data. Our results show promise for future healthcare applications especially in applications where traditionally, highly confidential medical data and human-expert annotation would normally be required.
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- 2024
175. The SRG/eROSITA all-sky survey: First X-ray catalogues and data release of the western Galactic hemisphere
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Merloni, A., Lamer, G., Liu, T., Ramos-Ceja, M. E., Brunner, H., Bulbul, E., Dennerl, K., Doroshenko, V., Freyberg, M. J., Friedrich, S., Gatuzz, E., Georgakakis, A., Haberl, F., Igo, Z., Kreykenbohm, I., Liu, A., Maitra, C., Malyali, A., Mayer, M. G. F., Nandra, K., Predehl, P., Robrade, J., Salvato, M., Sanders, J. S., Stewart, I., Tubín-Arenas, D., Weber, P., Wilms, J., Arcodia, R., Artis, E., Aschersleben, J., Avakyan, A., Aydar, C., Bahar, Y. E., Balzer, F., Becker, W., Berger, K., Boller, T., Bornemann, W., Brüggen, M., Brusa, M., Buchner, J., Burwitz, V., Camilloni, F., Clerc, N., Comparat, J., Coutinho, D., Czesla, S., Dannhauer, S. M., Dauner, L., Dauser, T., Dietl, J., Dolag, K., Dwelly, T., Egg, K., Ehl, E., Freund, S., Friedrich, P., Gaida, R., Garrel, C., Ghirardini, V., Gokus, A., Grünwald, G., Grandis, S., Grotova, I., Gruen, D., Gueguen, A., Hämmerich, S., Hamaus, N., Hasinger, G., Haubner, K., Homan, D., Chitham, J. Ider, Joseph, W. M., Joyce, A., König, O., Kaltenbrunner, D. M., Khokhriakova, A., Kink, W., Kirsch, C., Kluge, M., Knies, J., Krippendorf, S., Krumpe, M., Kurpas, J., Li, P., Liu, Z., Locatelli, N., Lorenz, M., Müller, S., Magaudda, E., Mannes, C., McCall, H., Meidinger, N., Michailidis, M., Migkas, K., Muñoz-Giraldo, D., Musiimenta, B., Nguyen-Dang, N. T., Ni, Q., Olechowska, A., Ota, N., Pacaud, F., Pasini, T., Perinati, E., Pires, A. M., Pommranz, C., Ponti, G., Poppenhaeger, K., Pühlhofer, G., Rau, A., Reh, M., Reiprich, T. H., Roster, W., Saeedi, S., Santangelo, A., Sasaki, M., Schmitt, J., Schneider, P. C., Schrabback, T., Schuster, N., Schwope, A., Seppi, R., Serim, M. M., Shreeram, S., Sokolova-Lapa, E., Starck, H., Stelzer, B., Stierhof, J., Suleimanov, V., Tenzer, C., Traulsen, I., Trümper, J., Tsuge, K., Urrutia, T., Veronica, A., Waddell, S. G. H., Willer, R., Wolf, J., Yeung, M. C. H., Zainab, A., Zangrandi, F., Zhang, X., Zhang, Y., and Zheng, X.
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Astrophysics - High Energy Astrophysical Phenomena - Abstract
The eROSITA telescope array aboard the Spektrum Roentgen Gamma (SRG) satellite began surveying the sky in December 2019, with the aim of producing all-sky X-ray source lists and sky maps of an unprecedented depth. Here we present catalogues of both point-like and extended sources using the data acquired in the first six months of survey operations (eRASS1; completed June 2020) over the half sky whose proprietary data rights lie with the German eROSITA Consortium. We describe the observation process, the data analysis pipelines, and the characteristics of the X-ray sources. With nearly 930000 entries detected in the most sensitive 0.2-2.3 keV energy range, the eRASS1 main catalogue presented here increases the number of known X-ray sources in the published literature by more than 60%, and provides a comprehensive inventory of all classes of X-ray celestial objects, covering a wide range of physical processes. A smaller catalogue of 5466 sources detected in the less sensitive but harder 2.3-5 keV band is the result of the first true imaging survey of the entire sky above 2 keV. We show that the number counts of X-ray sources in eRASS1 are consistent with those derived over narrower fields by past X-ray surveys of a similar depth, and we explore the number counts variation as a function of the location in the sky. Adopting a uniform all-sky flux limit (at 50% completeness) of F_{0.5-2 keV} > 5 \times 10^{-14}$ erg\,s$^{-1}$\,cm$^{-2}$, we estimate that the eROSITA all-sky survey resolves into individual sources about 20% of the cosmic X-ray background in the 1-2 keV range. The catalogues presented here form part of the first data release (DR1) of the SRG/eROSITA all-sky survey. Beyond the X-ray catalogues, DR1 contains all detected and calibrated event files, source products (light curves and spectra), and all-sky maps. Illustrative examples of these are provided., Comment: 39 pages, 23 figures. Accepted for publication in A&A. Accompanying eROSITA-DE Data Release 1
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- 2024
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176. Stellar Evolution in Real Time II: R Hydrae and an Open-Source Grid of >3000 Seismic TP-AGB Models Computed with MESA
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Joyce, Meridith, Molnár, László, Cinquegrana, Giulia, Karakas, Amanda, Tayar, Jamie, and Tarczay-Nehéz, Dóra
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Astrophysics - Solar and Stellar Astrophysics ,Astrophysics - Instrumentation and Methods for Astrophysics - Abstract
We present a comprehensive characterization of the evolved thermally pulsing asymptotic giant branch (TP-AGB) star R Hydrae, building on the techniques applied in Stellar Evolution in Real Time I (Moln\'ar et al. 2019) to T Ursae Minoris. We compute over 3000 theoretical TP-AGB pulse spectra using MESA and GYRE and combine these with classical observational constraints and nearly 400 years of measurements of R Hya's period evolution to fit R Hya's evolutionary and asteroseismic features. Two hypotheses for the mode driving R Hya's period are considered. Solutions that identify this as the fundamental mode (FM) as well as the first overtone (O1) are consistent with observations. Using a variety of statistical tests, we find that R Hya is most likely driven by the FM and currently occupies the ``power down'' phase of an intermediate pulse (TP ~ 9-16). We predict that its pulsation period will continue to shorten for millennia. Using supplementary calculations from the Monash stellar evolution code, we also find that R Hya is likely to have undergone third dredge-up in its most recent pulse. The MESA+GYRE model grid used in this analysis includes exact solutions to the adiabatic equations of stellar oscillation for the first 10 radial-order pressure modes for every time step in every evolutionary track. The grid is fully open-source and packaged with a data visualization application. This is the first publicly available grid of TP-AGB models with seismology produced with MESA., Comment: accepted to ApJ March 2024. Final revisions complete. Github repository associated to this project: https://github.com/mjoyceGR/AGB_grid_visualizer All grids available on Zenodo: https://zenodo.org/records/11280179 There are FOUR Zenodo DOIs associated to this project, the first of which is above
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- 2024
177. RR Lyrae Stars Belonging to the Candidate Globular Cluster Patchick 99
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Butler, Evan, Kunder, Andrea, Prudil, Zdenek, Covey, Kevin R., Ball, Macy, Campos, Carlos, Gollnick, Kaylen, Carvajal, Julio Olivares, Hughes, Joanne, Devine, Kathryn, Johnson, Christian I., Vivas, A. Katherina, Rich, Michael R., Joyce, Meridith, Simon, Iulia T., Marchetti, Tommaso, Koch-Hansen, Andreas J., Clarkson, William I., and Kuss, Rebekah
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Astrophysics - Solar and Stellar Astrophysics ,Astrophysics - Astrophysics of Galaxies - Abstract
Patchick 99 is a candidate globular cluster located in the direction of the Galactic bulge, with a proper motion almost identical to the field and extreme field star contamination. A recent analysis suggests it is a low-luminosity globular cluster with a population of RR Lyrae stars. We present new spectra of stars in and around Patchick 99, targeting specifically the 3 RR Lyrae stars associated with the cluster as well as the other RR Lyrae stars in the field. A sample of 53 giant stars selected from proper motions and a position on CMD are also observed. The three RR Lyrae stars associated with the cluster have similar radial velocities and distances, and two of the targeted giants also have radial velocities in this velocity regime and [Fe/H] metallicities that are slightly more metal-poor than the field. Therefore, if Patchick 99 is a bonafide globular cluster, it would have a radial velocity of -92+/-10 km s-1, a distance of 6.7+/-0.4 kpc (as determined from the RR Lyrae stars), and an orbit that confines it to the inner bulge., Comment: Accepted to The Astrophysical Journal Letters. Replaced due to a typo in the title
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- 2024
178. A theoretical framework for BL Her stars -- II. New period-luminosity relations in the Gaia passbands
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Das, Susmita, Molnár, László, Kanbur, Shashi M., Joyce, Meridith, Bhardwaj, Anupam, Singh, Harinder P., Marconi, Marcella, Ripepi, Vincenzo, and Smolec, Radoslaw
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Astrophysics - Solar and Stellar Astrophysics - Abstract
We present new theoretical period-luminosity (PL) and period-Wesenheit (PW) relations for a fine grid of convective BL Her, the shortest period T2Cs, models computed using MESA-RSP and compare our results with the empirical relations from Gaia DR3. We use the state-of-the-art 1D non-linear radial stellar pulsation tool MESA-RSP to compute models of BL Her stars over a wide range of input parameters - metallicity (-2.0 dex $\leq$ [Fe/H] $\leq$ 0.0 dex), stellar mass (0.5M$_{\odot}$-0.8M$_{\odot}$), stellar luminosity (50L$_{\odot}$-300L$_{\odot}$) and effective temperature (full extent of the instability strip; in steps of 50K). The BL Her stars in the All Sky region exhibit statistically different PL slopes compared to the theoretical PL slopes computed using the four sets of convection parameters. We find the empirical PL and PW slopes from BL Her stars in the Magellanic Clouds to be statistically consistent with the theoretical relations computed using the different convection parameter sets in the Gaia passbands. There is negligible effect of metallicity on the PL relations in the individual Gaia passbands. However, there exists a small but significant negative coefficient of metallicity in the PWZ relations for the BL Her models using the four sets of convection parameters. This could be attributed to the increased sensitivity of bolometric corrections to metallicities at wavelengths shorter than the V band. Our BL Her models also suggest a dependence of the mass-luminosity relation on metallicity. We found the observed Fourier parameter space to be covered well by our models. Higher mass models (> 0.6M$_{\odot}$) may be needed to reliably model the observed light curves of BL Her stars in the All Sky region. We also found the theoretical light curve structures (especially the Fourier amplitude parameters) to be affected by the choice of convection parameters., Comment: 20 pages, 8 figures, accepted in Astronomy & Astrophysics
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- 2024
179. EHRAgent: Code Empowers Large Language Models for Few-shot Complex Tabular Reasoning on Electronic Health Records
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Shi, Wenqi, Xu, Ran, Zhuang, Yuchen, Yu, Yue, Zhang, Jieyu, Wu, Hang, Zhu, Yuanda, Ho, Joyce, Yang, Carl, and Wang, May D.
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Computer Science - Computation and Language ,Computer Science - Artificial Intelligence - Abstract
Large language models (LLMs) have demonstrated exceptional capabilities in planning and tool utilization as autonomous agents, but few have been developed for medical problem-solving. We propose EHRAgent, an LLM agent empowered with a code interface, to autonomously generate and execute code for multi-tabular reasoning within electronic health records (EHRs). First, we formulate an EHR question-answering task into a tool-use planning process, efficiently decomposing a complicated task into a sequence of manageable actions. By integrating interactive coding and execution feedback, EHRAgent learns from error messages and improves the originally generated code through iterations. Furthermore, we enhance the LLM agent by incorporating long-term memory, which allows EHRAgent to effectively select and build upon the most relevant successful cases from past experiences. Experiments on three real-world multi-tabular EHR datasets show that EHRAgent outperforms the strongest baseline by up to 29.6% in success rate. EHRAgent leverages the emerging few-shot learning capabilities of LLMs, enabling autonomous code generation and execution to tackle complex clinical tasks with minimal demonstrations., Comment: Accepted in EMNLP 2024 main conference
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- 2024
180. Implantable Photonic Neural Probes with Out-of-Plane Focusing Grating Emitters
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Xue, Tianyuan, Stalmashonak, Andrei, Chen, Fu-Der, Ding, Peisheng, Luo, Xianshu, Chua, Hongyao, Lo, Guo-Qiang, Sacher, Wesley D., and Poon, Joyce K. S.
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Physics - Optics - Abstract
We have designed, fabricated, and characterized implantable silicon neural probes with nanophotonic grating emitters that focus the emitted light at a specified distance above the surface of the probe for spatially precise optogenetic targeting of neurons. Using the holographic principle, we designed gratings for wavelengths of 488 and 594 nm, targeting the excitation spectra of the optogenetic actuators Channelrhodopsin-2 and Chrimson, respectively. The measured optical emission pattern of these emitters in non-scattering medium and tissue matched well with simulations. To our knowledge, this is the first report of focused spots with the size scale of a neuron soma in brain tissue formed from implantable neural probes., Comment: 11 pages, 6 figures
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- 2024
181. Relocalization of Uranium 5f Electrons in Antiferromagnetic Heavy Fermion Superconductor UPd$_2$Al$_3$: Insights from Angle-Resolved Photoemission Spectroscopy
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Song, Jiao-Jiao, Zhang, Chen, Wu, Qi-Yi, Zhao, Yin-Zou, Rusz, Jan, Joyce, John. J., Graham, Kevin. S., Riseborough, Peter, Olson, Clifford G., Liu, Hao, Chen, Bo, Yuan, Ya-Hua, Duan, Yu-Xia, Tobash, Paul H., Bauer, Eric D., Oppeneer, Peter M., Durakiewicz, Tomasz, and Meng, Jian-Qiao
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Condensed Matter - Strongly Correlated Electrons - Abstract
We investigate the antiferromagnetic heavy fermion superconductor UPd$_2$Al$_3$, employing angle-resolved photoemission spectroscopy to unravel the complex electronic structure of its U 5f electrons. We observe unexpected characteristics that challenge the conventional temperature-dependent behavior of heavy fermion systems, revealing unexpected characteristics. At temperatures above the anticipated coherence temperature (T$^*$), we observe itinerant U 5f electrons at temperatures higher than previously postulated. Additionally, a previously unidentified dispersionless band emerges around 600 meV below the Fermi energy, potentially linked to spin-orbit splitting within the U 5f states. Hybridization between the 5f electrons and conduction band was observed with an energy dispersion of 10 meV at low temperatures, suggesting that U 5f electrons near and at the Fermi surface have an itinerant nature. Temperature-dependent 5d-5f resonance spectra reveal that the 5f electron spectrum weight increases with lowering temperature and begins to decrease at temperatures significantly higher than the Neel temperature (T$_N$). We further show that the competition between the Kondo effect and Ruderman-Kittel-Kasuya-Yosida (RKKY) interactions may be responsible for the relocalization of 5f electrons, making relocalization a precursor to the establishment of magnetic order at lower temperatures. Our experiments also provide evidence that 5f electrons with the same orbital are involved in both the Kondo effect and RKKY interactions, suggesting that the two coexist at lower temperatures., Comment: 6 pages, 4 figures
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- 2024
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182. Resistência biológica e agentes deterioradores da madeira
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de Medeiros Neto, Pedro Nicó, primary, Pinto, Joyce de Almeida, additional, Brito, Flávia Maria Silva, additional, Paes, Juarez Benigno, additional, Ferreira, Glaucileide, additional, and Correia, Nédia Pereira Correia Mendes, additional
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- 2024
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183. ASPECTOS EPIDEMIOLÓGICOS E DISTRIBUIÇÃO DE CASOS DE ESQUISTOSSOMOSE EM PERNAMBUCO
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Cabral, Luan Antônio dos Santos, primary, Silva, Milena Nayara, additional, Silva, Wyllyana Rhayane Barbosa, additional, Santos, Joyce Sabrina da Silva, additional, Silva, Artur Filipe Bezerra da, additional, Santos, Samara Suênia dos, additional, Araújo, Sarah Silva, additional, Silva, Rayanne de Melo, additional, and Silva, Hellen Karine Xavier da, additional
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- 2024
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184. RAIVA HUMANA NO BRASIL: ESTUDO DESCRITIVO DOS ANOS DE 2011 - 2021
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Cabral, Luan Antônio dos Santos, primary, Silva, Milena Nayara, additional, Silva, Wyllyana Rhayane Barbosa, additional, Moura, Nancy Nayanny de Oliveira, additional, Santos, Joyce Sabrina da Silva, additional, Silva, Carlos Danilo da, additional, Dias, Yona Bárbara Demeziano, additional, Silva, Alícia Maria da, additional, and Vieira, Letícia Carla Lourenço, additional
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- 2024
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185. Final Results From the Randomized Phase III ASCENT Clinical Trial in Metastatic Triple-Negative Breast Cancer and Association of Outcomes by Human Epidermal Growth Factor Receptor 2 and Trophoblast Cell Surface Antigen 2 Expression.
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Tolaney, Sara, Loirat, Delphine, Punie, Kevin, Oliveira, Mafalda, Brufsky, Adam, Kalinsky, Kevin, Cortés, Javier, Shaughnessy, Joyce, Diéras, Véronique, Carey, Lisa, Gianni, Luca, Piccart-Gebhart, Martine, Loibl, Sibylle, Yoon, Oh, Pan, Yang, Hofsess, Scott, Phan, See-Chun, Hurvitz, Sara, Bardia, Aditya, and Rugo, Hope
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Humans ,Triple Negative Breast Neoplasms ,Female ,Middle Aged ,Antigens ,Neoplasm ,Adult ,Receptor ,ErbB-2 ,Antibodies ,Monoclonal ,Humanized ,Cell Adhesion Molecules ,Aged ,Immunoconjugates ,Camptothecin ,Progression-Free Survival ,Neoplasm Metastasis - Abstract
Clinical trials frequently include multiple end points that mature at different times. The initial report, typically based on the primary end point, may be published when key planned co-primary or secondary analyses are not yet available. Clinical Trial Updates provide an opportunity to disseminate additional results from studies, published in JCO or elsewhere, for which the primary end point has already been reported.Sacituzumab govitecan (SG), a first-in-class anti-trophoblast cell surface antigen 2 (Trop-2) antibody-drug conjugate, demonstrated superior efficacy over single-agent chemotherapy (treatment of physicians choice [TPC]) in patients with metastatic triple-negative breast cancer (mTNBC) in the international, multicenter, phase III ASCENT study.Patients were randomly assigned 1:1 to receive SG or TPC until unacceptable toxicity/progression. Final efficacy secondary end point analyses and post hoc analyses of outcomes stratified by Trop-2 expression and human epidermal growth factor receptor 2 status are reported. Updated safety analyses are provided.In this final analysis, SG (n = 267) improved median progression-free survival (PFS; 4.8 v 1.7 months; hazard ratio (HR), 0.41 [95% CI, 0.33 to 0.52]) and median overall survival (OS; 11.8 v 6.9 months; HR, 0.51 [95% CI, 0.42 to 0.63]) over TPC (n = 262). SG improved PFS over TPC in each Trop-2 expression quartile (n = 168); a trend was observed for improved OS across quartiles. Overall, SG had a manageable safety profile, with ≤5% of treatment-related discontinuations because of adverse events and no treatment-related deaths. The safety profile was consistent across all subgroups.These data confirm the clinical benefit of SG over chemotherapy, reinforcing SG as an effective treatment option in patients with mTNBC in the second line or later.
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- 2024
186. Analysis of Tumor-Associated AXIN1 Missense Mutations Identifies Variants That Activate β-Catenin Signaling.
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Peppelenbosch, Maikel, Lebbink, Joyce, Smits, Ron, Zhang, Ruyi, Li, Shanshan, Schippers, Kelly, Li, Yunlong, Eimers, Boaz, Lavrijsen, Marla, Wang, Ling, Cui, Guofei, and Chen, Xin
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Axin Protein ,Humans ,beta Catenin ,Mutation ,Missense ,Signal Transduction ,Glycogen Synthase Kinase 3 beta ,Liver Neoplasms ,Neoplasms ,HEK293 Cells ,Cell Line ,Tumor ,Protein Binding - Abstract
UNLABELLED: AXIN1 is a major component of the β-catenin destruction complex and is frequently mutated in various cancer types, particularly liver cancers. Truncating AXIN1 mutations are recognized to encode a defective protein that leads to β-catenin stabilization, but the functional consequences of missense mutations are not well characterized. Here, we first identified the GSK3β, β-catenin, and RGS/APC interaction domains of AXIN1 that are the most critical for proper β-catenin regulation. Analysis of 80 tumor-associated variants in these domains identified 18 that significantly affected β-catenin signaling. Coimmunoprecipitation experiments revealed that most of them lost binding to the binding partner corresponding to the mutated domain. A comprehensive protein structure analysis predicted the consequences of these mutations, which largely overlapped with the observed effects on β-catenin signaling in functional experiments. The structure analysis also predicted that loss-of-function mutations within the RGS/APC interaction domain either directly affected the interface for APC binding or were located within the hydrophobic core and destabilized the entire structure. In addition, truncated AXIN1 length inversely correlated with the β-catenin regulatory function, with longer proteins retaining more functionality. These analyses suggest that all AXIN1-truncating mutations at least partially affect β-catenin regulation, whereas this is only the case for a subset of missense mutations. Consistently, most colorectal and liver cancers carrying missense variants acquire mutations in other β-catenin regulatory genes such as APC and CTNNB1. These results will aid the functional annotation of AXIN1 mutations identified in large-scale sequencing efforts or in individual patients. SIGNIFICANCE: Characterization of 80 tumor-associated missense variants of AXIN1 reveals a subset of 18 mutations that disrupt its β-catenin regulatory function, whereas the majority are passenger mutations.
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- 2024
187. Niraparib, Dostarlimab, and Bevacizumab as Combination Therapy in Pretreated, Advanced Platinum-Resistant Ovarian Cancer: Findings From Cohort A of the OPAL Phase II Trial.
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Liu, Joyce, Gaillard, Stéphanie, Wahner Hendrickson, Andrea, Yeku, Oladapo, Diver, Elisabeth, Gunderson Jackson, Camille, Arend, Rebecca, Ratner, Elena, Samnotra, Vivek, Gupta, Divya, Chung, Jon, Zhang, Hailei, Compton, Natalie, Baines, Amanda, Bacqué, Emeline, Liu, Xiaohong, Felicetti, Brunella, and Konecny, Gottfried
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Humans ,Female ,Middle Aged ,Ovarian Neoplasms ,Aged ,Bevacizumab ,Adult ,Indazoles ,Aged ,80 and over ,Piperidines ,Drug Resistance ,Neoplasm ,Antineoplastic Combined Chemotherapy Protocols ,Antibodies ,Monoclonal ,Humanized ,Cohort Studies - Abstract
PURPOSE: To report the results of OPAL (ClinicalTrials.gov identifier: NCT03574779) cohort A, a single-arm substudy of niraparib plus dostarlimab and bevacizumab for the treatment of advanced, platinum-resistant ovarian cancer (PROC). METHODS: Participants with PROC who received 1-2 previous lines of therapy were treated with niraparib (200 or 300 mg once daily), dostarlimab (500 mg once every 3 weeks for four 21-day cycles, followed by 1,000 mg once every 6 weeks), and bevacizumab (15 mg/kg once every 3 weeks). The primary end point was investigator-assessed objective response rate (ORR) per RECIST v1.1. Safety was also assessed. Exploratory biomarker end points included evaluation of changes in the tumor molecular profile and microenvironment using baseline and on-treatment tumor samples. RESULTS: Of 41 enrolled participants (median age, 66.0 years [range, 37-83 years]), 9.8% had tumors that were BRCA-mutated, 19.5% were homologous recombination (HR)-deficient, and 17.1% were HR repair (HRR)-mutated. As of the cutoff date, all participants discontinued treatment. The ORR was 17.1% (80% CI, 9.8 to 27.0), including one complete response (2.4%); the disease control rate was 73.2% (80% CI, 62.3 to 82.2). Two participants withdrew before first postbaseline scan because of adverse events (AEs). Grade ≥3 treatment-emergent AEs were reported in 92.7% of participants, with the most common being hypertension (26.8%). Response was not correlated with BRCA, HRR, HR deficiency (HRD), or PD-L1 status. Changes suggesting immune activation were observed in on-treatment samples after triplet therapy. CONCLUSION: Results demonstrated modest activity of niraparib, dostarlimab, and bevacizumab in participants with PROC, many of whom had prognostic factors for poor treatment response. Most participants with response were bevacizumab-naïve. No association was found with HRD, BRCA, or PD-L1 status. AEs were consistent with previous monotherapy reports, except that hypertension was reported more frequently.
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- 2024
188. Active restoration accelerates recovery of tropical forest bird assemblages over two decades
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Joyce, Francis H, Rosales, Juan Abel, Holl, Karen D, Zahawi, Rakan A, Bui, An, and Reid, J Leighton
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Environmental Sciences ,Ecological Applications ,Ecology ,Biological Sciences ,Regenerative Medicine ,Life Below Water ,Applied nucleation ,Avian communities ,Costa Rica ,Habitat recovery ,Natural regeneration ,Tree plantation ,Agricultural and Veterinary Sciences ,Zoology ,Environmental management - Published
- 2024
189. A new hip fracture risk index derived from FEA-computed proximal femur fracture loads and energies-to-failure.
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Cao, Xuewei, Sigurdsson, Sigurdur, Zhao, Chen, Zhou, Weihua, Liu, Anqi, Deng, Hong-Wen, Gudnason, Vilmundur, Sha, Qiuying, Lang, Thomas, and Keyak, Joyce
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Bone strength ,Finite element analysis ,Hip fracture risk ,Osteoporosis ,Principal component analysis ,Male ,Humans ,Proximal Femoral Fractures ,Hip Fractures ,Bone Density ,Femur ,ROC Curve ,Finite Element Analysis - Abstract
UNLABELLED: Hip fracture risk assessment is an important but challenging task. Quantitative CT-based patient-specific finite element (FE) analysis (FEA) incorporates bone geometry and bone density in the proximal femur. We developed a global FEA-computed fracture risk index to increase the prediction accuracy of hip fracture incidence. PURPOSE: Quantitative CT-based patient-specific finite element (FE) analysis (FEA) incorporates bone geometry and bone density in the proximal femur to compute the force (fracture load) and energy necessary to break the proximal femur in a particular loading condition. The fracture loads and energies-to-failure are individually associated with incident hip fracture, and provide different structural information about the proximal femur. METHODS: We used principal component analysis (PCA) to develop a global FEA-computed fracture risk index that incorporates the FEA-computed yield and ultimate failure loads and energies-to-failure in four loading conditions of 110 hip fracture subjects and 235 age- and sex-matched control subjects from the AGES-Reykjavik study. Using a logistic regression model, we compared the prediction performance for hip fracture based on the stratified resampling. RESULTS: We referred the first principal component (PC1) of the FE parameters as the global FEA-computed fracture risk index, which was the significant predictor of hip fracture (p-value
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- 2024
190. Impact of dose reductions on adjuvant abemaciclib efficacy for patients with high-risk early breast cancer: analyses from the monarchE study.
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Goetz, Matthew, Cicin, Irfan, Testa, Laura, Tolaney, Sara, Huober, Jens, Guarneri, Valentina, Johnston, Stephen, Martin, Miguel, Rastogi, Priya, Harbeck, Nadia, Shahir, Ashwin, Wei, Ran, André, Valérie, Rugo, Hope, and OShaughnessy, Joyce
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In monarchE, adjuvant abemaciclib significantly improved invasive disease-free survival (IDFS) and distant relapse-free survival (DRFS), with sustained benefit beyond the 2-year treatment period. Abemaciclib dose reductions were allowed to proactively manage adverse events. Exploratory analyses to investigate the impact of dose reductions on efficacy were conducted. Across the three patient subgroups as defined by relative dose intensity (≤66%, 66-93%, ≥93%), the estimated 4-year IDFS rates were generally consistent (87.1%, 86.4%, and 83.7%, respectively). In the time-dependent Cox proportional hazard model, the effect of abemaciclib was consistent at the full dose compared to being reduced to a lower dose (IDFS hazard ratio: 0.905; 95% confidence interval: 0.727, 1.125; DRFS hazard ratio: 0.942; 95% confidence interval: 0.742, 1.195). These analyses showed that the efficacy of adjuvant abemaciclib was not compromised by protocol mandated dose reductions for patients with node positive, hormone receptor positive, human epidermal growth factor 2-negative, high-risk early breast cancer.
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- 2024
191. Multi-omics Analysis Reveals Immune Features Associated with Immunotherapy Benefit in Patients with Squamous Cell Lung Cancer from Phase III Lung-MAP S1400I Trial.
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Parra, Edwin, Zhang, Jiexin, Duose, Dzifa, Gonzalez-Kozlova, Edgar, Redman, Mary, Chen, Hong, Manyam, Ganiraju, Kumar, Gayatri, Zhang, Jianhua, Song, Xingzhi, Lazcano, Rossana, Marques-Piubelli, Mario, Laberiano-Fernandez, Caddie, Rojas, Frank, Zhang, Baili, Taing, Len, Jhaveri, Aashna, Geisberg, Jacob, Altreuter, Jennifer, Michor, Franziska, Provencher, James, Yu, Joyce, Cerami, Ethan, Moravec, Radim, Kannan, Kasthuri, Luthra, Rajyalakshmi, Alatrash, Gheath, Huang, Hsin-Hui, Xie, Hui, Patel, Manishkumar, Nie, Kai, Harris, Jocelyn, Argueta, Kimberly, Lindsay, James, Biswas, Roshni, Van Nostrand, Stephen, Kim-Schulze, Seunghee, Gray, Jhanelle, Herbst, Roy, Wistuba, Ignacio, Gettinger, Scott, Kelly, Karen, Bazhenova, Lyudmila, Gnjatic, Sacha, Lee, J, Zhang, Jianjun, and Haymaker, Cara
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Humans ,Nivolumab ,Lung Neoplasms ,Multiomics ,Antineoplastic Combined Chemotherapy Protocols ,Carcinoma ,Non-Small-Cell Lung ,Carcinoma ,Squamous Cell ,Immunotherapy ,Lung ,Epithelial Cells ,Ipilimumab ,Tumor Microenvironment - Abstract
PURPOSE: Identifying molecular and immune features to guide immune checkpoint inhibitor (ICI)-based regimens remains an unmet clinical need. EXPERIMENTAL DESIGN: Tissue and longitudinal blood specimens from phase III trial S1400I in patients with metastatic squamous non-small cell carcinoma (SqNSCLC) treated with nivolumab monotherapy (nivo) or nivolumab plus ipilimumab (nivo+ipi) were subjected to multi-omics analyses including multiplex immunofluorescence (mIF), nCounter PanCancer Immune Profiling Panel, whole-exome sequencing, and Olink. RESULTS: Higher immune scores from immune gene expression profiling or immune cell infiltration by mIF were associated with response to ICIs and improved survival, except regulatory T cells, which were associated with worse overall survival (OS) for patients receiving nivo+ipi. Immune cell density and closer proximity of CD8+GZB+ T cells to malignant cells were associated with superior progression-free survival and OS. The cold immune landscape of NSCLC was associated with a higher level of chromosomal copy-number variation (CNV) burden. Patients with LRP1B-mutant tumors had a shorter survival than patients with LRP1B-wild-type tumors. Olink assays revealed soluble proteins such as LAMP3 increased in responders while IL6 and CXCL13 increased in nonresponders. Upregulation of serum CXCL13, MMP12, CSF-1, and IL8 were associated with worse survival before radiologic progression. CONCLUSIONS: The frequency, distribution, and clustering of immune cells relative to malignant ones can impact ICI efficacy in patients with SqNSCLC. High CNV burden may contribute to the cold immune microenvironment. Soluble inflammation/immune-related proteins in the blood have the potential to monitor therapeutic benefit from ICI treatment in patients with SqNSCLC.
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- 2024
192. Identifying predictors of translocation success in rare plant species
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Bellis, Joe, Osazuwa‐Peters, Oyomoare, Maschinski, Joyce, Keir, Matthew J, Parsons, Elliott W, Kaye, Thomas N, Kunz, Michael, Possley, Jennifer, Menges, Eric, Smith, Stacy A, Roth, Daniela, Brewer, Debbie, Brumback, William, Lange, James J, Niederer, Christal, Turner‐Skoff, Jessica B, Bontrager, Megan, Braham, Richard, Coppoletta, Michelle, Holl, Karen D, Williamson, Paula, Bell, Timothy, Jonas, Jayne L, McEachern, Kathryn, Robertson, Kathy L, Birnbaum, Sandra J, Dattilo, Adam, Dollard, John J, Fant, Jeremie, Kishida, Wendy, Lesica, Peter, Link, Steven O, Pavlovic, Noel B, Poole, Jackie, Reemts, Charlotte M, Stiling, Peter, Taylor, David D, Titus, Jonathan H, Titus, Priscilla J, Adkins, Edith D, Chambers, Timothy, Paschke, Mark W, Heineman, Katherine D, and Albrecht, Matthew A
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Climate Change Impacts and Adaptation ,Ecological Applications ,Biological Sciences ,Ecology ,Environmental Sciences ,Life on Land ,Conservation of Natural Resources ,Plants ,Reproduction ,Seeds ,Ecosystem ,endangered species ,population restoration ,reintroduction ,seedling recruitment ,species recovery ,threatened species ,especie amenazada ,especie en peligro ,reclutamiento de plántulas ,recuperación de especie ,reintroducción ,restauración poblacional ,出苗 ,受威胁物种 ,濒危物种 ,物种恢复 ,种群恢复 ,重引入 ,Agricultural and Veterinary Sciences ,Zoology ,Environmental management - Abstract
The fundamental goal of a rare plant translocation is to create self-sustaining populations with the evolutionary resilience to persist in the long term. Yet, most plant translocation syntheses focus on a few factors influencing short-term benchmarks of success (e.g., survival and reproduction). Short-term benchmarks can be misleading when trying to infer future growth and viability because the factors that promote establishment may differ from those required for long-term persistence. We assembled a large (n = 275) and broadly representative data set of well-documented and monitored (7.9 years on average) at-risk plant translocations to identify the most important site attributes, management techniques, and species' traits for six life-cycle benchmarks and population metrics of translocation success. We used the random forest algorithm to quantify the relative importance of 29 predictor variables for each metric of success. Drivers of translocation outcomes varied across time frames and success metrics. Management techniques had the greatest relative influence on the attainment of life-cycle benchmarks and short-term population trends, whereas site attributes and species' traits were more important for population persistence and long-term trends. Specifically, large founder sizes increased the potential for reproduction and recruitment into the next generation, whereas declining habitat quality and the outplanting of species with low seed production led to increased extinction risks and a reduction in potential reproductive output in the long-term, respectively. We also detected novel interactions between some of the most important drivers, such as an increased probability of next-generation recruitment in species with greater seed production rates, but only when coupled with large founder sizes. Because most significant barriers to plant translocation success can be overcome by improving techniques or resolving site-level issues through early intervention and management, we suggest that by combining long-term monitoring with adaptive management, translocation programs can enhance the prospects of achieving long-term success.
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- 2024
193. 2024 SBM Annual Meeting Abstracts Supplement
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Ma, Carmen, Vang, Weeko, Yu, Edgar, Chen, Julin, Wong, Ching, Cheng, Joyce, Jacob, Peyton, and Tsoh, Janice Y
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Health Sciences ,Psychology ,Medical and Health Sciences ,Education ,Psychology and Cognitive Sciences ,Public Health ,Health sciences - Abstract
Background: Thirdhand smoke (THS) contains toxic residues, including carcinogens, which persist on surfaces and clothes even after cigarette smoke dissipates. The public awareness of THS and its health effects remain low. Objective: This study examined beliefs about THS among Chinese-speaking former smokers and their non-smoking family members, before and after participating in a family-based THS education program. Methods: We implemented a 2-week THS education intervention delivered by lay health workers with 30 Chinese American dyads (N=60) residing in Northern California, consisting of former smokers who quit within the past 2 years and their family members. THS beliefs were assessed using the Beliefs About Thirdhand Smoke (BATHS) questionnaire administered at pre- and postintervention. Focus groups with 8 former smokers and 7 family participants were conducted. We used multivariable regression with Generalized Estimating Equations to account for time points and household correlations to assess changes in BATHS scores (Overall, Persistence and Health subscales). Focus group transcripts underwent independent coding by two researchers and thematic analysis. Results: The study sample included 30 male former smokers (37% with slight to mild craving for smoking), and 30 family members (97% female) who never smoked. A majority (82%) spoke English less than well, 83% were married, 58% lived with children and 27% with current smokers. All multivariable models showed a significant time x role (former smokers vs family) interaction (p < 0.05). Former smokers had lower BATHS scores than their family at preintervention (p < 0.01), but their scores became similar at post-intervention. Former smokers’ BATHS scores increased from pre- to post-intervention (Overall: p=0.02; Persistence: p=0.03; Health: p=0.04) while family had no significant change. Prominent themes from focus groups supported gaining new knowledge for both persistence and health effects of THS. Both former smokers and family members appreciated learning about cleaning methods and both shared increased family discussions and collaboration in household cleaning post intervention. Conclusion: THS education impacts former smokers and their non-smoking family members differently. Family-based interventions are promising to align beliefs and promote collaboration within households in addressing THS. Future randomized controlled trials should investigate broader impacts of the program on enhancing support for motivating quitting for current smokers, maintaining smoking abstinence, and in reducing THS exposure.
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- 2024
194. Empowering former smokers to become agents of change through thirdhand smoke education
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Ma, Carmen, Vang, Weeko, Yu, Edgar, Chen, Julin, Wong, Ching, Cheng, Joyce, Jacob, Peyton, and Tsoh, Janice Y
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Significance: Thirdhand smoke (THS), which includes secondhand smoke contami- nants, can be re-emitted and re-suspended into the air and are embedded into carpets, floors, and clothing. The awareness of THS and the health impacts from exposure to its harmful residues is low in the general population of the United States, especially in immigrant communities where smoking remains prevalent. Our study implemented a THS family-based intervention to promote THS awareness among Chinese American immigrants. Methods: The THS intervention included an education and home cleaning component delivered by lay health workers to 30 Chinese American dyads (N=60). Dyads consisted of former smokers who quit within the last two years and their non-smoking family member living in the same household. Participants completed pre- and post-in- tervention survey interviews and a sub-sample (N=15; 8 former smokers and 7 family members) participated in a post-intervention focus group. Multivariable regression adjusted for dyadic data was conducted to compare pre- and post-intervention changes in the Beliefs About Thirdhand Smoke (BATHS) overall and subscale (Persistence and Health) scores. Transcriptions from focus group interviews, conducted in Cantonese, were transcribed and translated, coded by two independent researchers and themati- cally analyzed using Dedoose. Results: All participants were born outside the US and 59% immigrated at age 30 or older (range: 7 to 63 years old). A majority (82%) spoke English less than “well” and 87% were married. BATHS scores analyses suggested that former smokers increased their THS awareness from pre- to post-intervention: BATHS Overall (M=3.95 [SD=0.50], p=0.021); Persistence (M=3.95 [SD=0.48], p=0.031) and Health (M=3.94 [SD=0.58], p=0.038), and their post-intervention THS scores became similar to the BATH scores of non-smoking family members which did not change at post-intervention. Thematic analyses of focus group interviews revealed emerging themes highlighting impacts on former smokers in increasing THS knowledge and strengthening desires to create dialogue about tobacco use with friends; for example, a former smoker shared “I will share my [THS] knowledge with others. I think it will help [my friends] as well.” Conclusion: A family-based THS education intervention has promising impacts to advance tobacco control in Chinese American immigrant communities by providing new THS knowledge and encouraging former smokers to become agents of change. Future research on empowering former smokers to become effective agents of change to promote tobacco-free communities is warranted.
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- 2024
195. Adjuvant Abemaciclib Plus Endocrine Therapy for Hormone Receptor-Positive, Human Epidermal Growth Factor Receptor 2-Negative, High-Risk Early Breast Cancer: Results From a Preplanned monarchE Overall Survival Interim Analysis, Including 5-Year Efficacy Outcomes.
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Rastogi, Priya, OShaughnessy, Joyce, Martin, Miguel, Boyle, Frances, Cortes, Javier, Goetz, Matthew, Hamilton, Erika, Huang, Chiun-Sheng, Senkus, Elzbieta, Tryakin, Alexey, Cicin, Irfan, Testa, Laura, Neven, Patrick, Huober, Jens, Shao, Zhimin, Wei, Ran, André, Valérie, Munoz, Maria, San Antonio, Belen, Shahir, Ashwin, Harbeck, Nadia, Johnston, Stephen, and Rugo, Hope
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Humans ,Female ,Breast Neoplasms ,Neoplasm Recurrence ,Local ,Adjuvants ,Immunologic ,Receptor ,ErbB-2 ,Antineoplastic Combined Chemotherapy Protocols ,Aminopyridines ,Benzimidazoles - Abstract
Clinical trials frequently include multiple end points that mature at different times. The initial report, typically based on the primary end point, may be published when key planned co-primary or secondary analyses are not yet available. Clinical trial updates provide an opportunity to disseminate additional results from studies, published in JCO or elsewhere, for which the primary end point has already been reported.Two years of adjuvant abemaciclib combined with endocrine therapy (ET) resulted in a significant improvement in invasive disease-free survival (IDFS) and distant relapse-free survival (DRFS) that persisted beyond the 2-year treatment period in patients with hormone receptor-positive, human epidermal growth factor receptor 2-negative, node-positive, high-risk early breast cancer (EBC). Here, we report 5-year efficacy results from a prespecified overall survival (OS) interim analysis. In the intent-to-treat population, with a median follow-up of 54 months, the benefit of abemaciclib was sustained with hazard ratios of 0.680 (95% CI, 0.599 to 0.772) for IDFS and 0.675 (95% CI, 0.588 to 0.774) for DRFS. This persistence of abemaciclib benefit translated to continuous separation of the curves with a deepening in 5-year absolute improvement in IDFS and DRFS rates of 7.6% and 6.7%, respectively, compared with rates of 6% and 5.3% at 4 years and 4.8% and 4.1% at 3 years. With fewer deaths in the abemaciclib plus ET arm compared with the ET-alone arm (208 v 234), statistical significance was not reached for OS. No new safety signals were observed. In conclusion, abemaciclib plus ET continued to reduce the risk of developing invasive and distant disease recurrence beyond the completion of treatment. The increasing absolute improvement at 5 years is consistent with a carryover effect and further supports the use of abemaciclib in patients with high-risk EBC.
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- 2024
196. Mapping dysfunctional circuits in the frontal cortex using deep brain stimulation.
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Hollunder, Barbara, Ostrem, Jill, Sahin, Ilkem, Rajamani, Nanditha, Oxenford, Simón, Butenko, Konstantin, Neudorfer, Clemens, Reinhardt, Pablo, Zvarova, Patricia, Polosan, Mircea, Akram, Harith, Vissani, Matteo, Zhang, Chencheng, Sun, Bomin, Navratil, Pavel, Reich, Martin, Volkmann, Jens, Yeh, Fang-Cheng, Baldermann, Juan, Dembek, Till, Visser-Vandewalle, Veerle, Alho, Eduardo, Franceschini, Paulo, Nanda, Pranav, Finke, Carsten, Kühn, Andrea, Dougherty, Darin, Richardson, R, Bergman, Hagai, DeLong, Mahlon, Mazzoni, Alberto, Romito, Luigi, Tyagi, Himanshu, Zrinzo, Ludvic, Joyce, Eileen, Chabardes, Stephan, Li, Ningfei, Horn, Andreas, and Starr, Philip
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Humans ,Deep Brain Stimulation ,Brain ,Motor Cortex ,Parkinson Disease ,Brain Mapping - Abstract
Frontal circuits play a critical role in motor, cognitive and affective processing, and their dysfunction may result in a variety of brain disorders. However, exactly which frontal domains mediate which (dys)functions remains largely elusive. We studied 534 deep brain stimulation electrodes implanted to treat four different brain disorders. By analyzing which connections were modulated for optimal therapeutic response across these disorders, we segregated the frontal cortex into circuits that had become dysfunctional in each of them. Dysfunctional circuits were topographically arranged from occipital to frontal, ranging from interconnections with sensorimotor cortices in dystonia, the primary motor cortex in Tourettes syndrome, the supplementary motor area in Parkinsons disease, to ventromedial prefrontal and anterior cingulate cortices in obsessive-compulsive disorder. Our findings highlight the integration of deep brain stimulation with brain connectomics as a powerful tool to explore couplings between brain structure and functional impairments in the human brain.
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- 2024
197. The Alopecia Areata Severity and Morbidity Index (ASAMI) Study
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Group, ASAMI Consensus Survey Study, Moussa, Anthony, Bennett, Michaela, Wall, Dmitri, Meah, Nekma, York, Katherine, Bokhari, Laita, Asfour, Leila, Rees, Huw, Abraham, Leonardo Spagnol, Asz-Sigall, Daniel, Basmanav, Fitnat Buket, Bergfeld, Wilma, Betz, Regina C, Bhoyrul, Bevin, Blume-Peytavi, Ulrike, Callender, Valerie, Chitreddy, Vijaya, Combalia, Andrea, Cotsarelis, George, Craiglow, Brittany, Dhurat, Rachita, Donovan, Jeff, Doroshkevich, Andrei, Eisman, Samantha, Farrant, Paul, Ferrando, Juan, Gadzhigoroeva, Aida, Green, Jack, Grimalt, Ramon, Harries, Matthew, Hordinsky, Maria, Irvine, Alan, Jolliffe, Victoria, Kaiumov, Spartak, King, Brett, Lee, Joyce, Lee, Won-Soo, Li, Jane, Lortkipanidze, Nino, McMichael, Amy, Mesinkovska, Natasha Atanaskova, Messenger, Andrew, Mirmirani, Paradi, Olsen, Elise, Orlow, Seth J, Ovcharenko, Yuliya, Piraccini, Bianca Maria, Pirmez, Rodrigo, Rakowska, Adriana, Reygagne, Pascal, Rudnicka, Lidia, Corralo, David Saceda, Senna, Maryanne, Shapiro, Jerry, Sharma, Pooja, Siliuk, Tatiana, Starace, Michela, Suchonwanit, Poonkiat, Takwale, Anita, Tosti, Antonella, Vañó-Galván, Sergio, Visser, Willem I, Vogt, Annika, Wade, Martin, Yip, Leona, Zhou, Cheng, and Sinclair, Rodney
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Biomedical and Clinical Sciences ,Clinical Sciences ,Health Sciences ,Autoimmune Disease ,Good Health and Well Being ,Humans ,Alopecia Areata ,Consensus ,Quality of Life ,Alopecia ,Morbidity ,ASAMI Consensus Survey Study Group ,Oncology and Carcinogenesis - Abstract
ImportanceCurrent measures of alopecia areata (AA) severity, such as the Severity of Alopecia Tool score, do not adequately capture overall disease impact.ObjectiveTo explore factors associated with AA severity beyond scalp hair loss, and to support the development of the Alopecia Areata Severity and Morbidity Index (ASAMI).Evidence reviewA total of 74 hair and scalp disorder specialists from multiple continents were invited to participate in an eDelphi project consisting of 3 survey rounds. The first 2 sessions took place via a text-based web application following the Delphi study design. The final round took place virtually among participants via video conferencing software on April 30, 2022.FindingsOf all invited experts, 64 completed the first survey round (global representation: Africa [4.7%], Asia [9.4%], Australia [14.1%], Europe [43.8%], North America [23.4%], and South America [4.7%]; health care setting: public [20.3%], private [28.1%], and both [51.6%]). A total of 58 specialists completed the second round, and 42 participated in the final video conference meeting. Overall, consensus was achieved in 96 of 107 questions. Several factors, independent of the Severity of Alopecia Tool score, were identified as potentially worsening AA severity outcomes. These factors included a disease duration of 12 months or more, 3 or more relapses, inadequate response to topical or systemic treatments, rapid disease progression, difficulty in cosmetically concealing hair loss, facial hair involvement (eyebrows, eyelashes, and/or beard), nail involvement, impaired quality of life, and a history of anxiety, depression, or suicidal ideation due to or exacerbated by AA. Consensus was reached that the Alopecia Areata Investigator Global Assessment scale adequately classified the severity of scalp hair loss.Conclusions and relevanceThis eDelphi survey study, with consensus among global experts, identified various determinants of AA severity, encompassing not only scalp hair loss but also other outcomes. These findings are expected to facilitate the development of a multicomponent severity tool that endeavors to competently measure disease impact. The findings are also anticipated to aid in identifying candidates for current and emerging systemic treatments. Future research must incorporate the perspectives of patients and the public to assign weight to the domains recognized in this project as associated with AA severity.
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- 2024
198. Grasping, Part Identification, and Pose Refinement in One Shot with a Tactile Gripper
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Lim, Joyce Xin-Yan and Pham, Quang-Cuong
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Computer Science - Robotics - Abstract
The rise in additive manufacturing comes with unique opportunities and challenges. Rapid changes to part design and massive part customization distinctive to 3D-Print (3DP) can be easily achieved. Customized parts that are unique, yet exhibit similar features such as dental moulds, shoe insoles, or engine vanes could be industrially manufactured with 3DP. However, the opportunity for massive part customization comes with unique challenges for the existing production paradigm of robotics applications, as the current robotics paradigm for part identification and pose refinement is repetitive, where data-driven and object-dependent approaches are often used. Thus, a bottleneck exists in robotics applications for 3DP parts where massive customization is involved, as it is difficult for feature-based deep learning approaches to distinguish between similar parts such as shoe insoles belonging to different people. As such, we propose a method that augments patterns on 3DP parts so that grasping, part identification, and pose refinement can be executed in one shot with a tactile gripper. We also experimentally evaluate our approach from three perspectives, including real insertion tasks that mimic robotic sorting and packing, and achieved excellent classification results, a high insertion success rate of 95%, and a sub-millimeter pose refinement accuracy., Comment: 6 pages, 5 figures
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- 2023
199. Quantized conductance in split gate superconducting quantum point contacts with InGaAs semiconducting two-dimensional electron systems
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Delfanazari, Kaveh, Li, Jiahui, Xiong, Yusheng, Ma, Pengcheng, Puddy, Reuben K., Yi, Teng, Farrer, Ian, Komori, Sachio, Robinson, Jason W. A., Serra, Llorenc, Ritchie, David A., Kelly, Michael J., Joyce, Hannah J., and Smith, Charles G.
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Quantum Physics ,Condensed Matter - Mesoscale and Nanoscale Physics ,Condensed Matter - Strongly Correlated Electrons ,Condensed Matter - Superconductivity ,Physics - Applied Physics - Abstract
Quantum point contact or QPC -- a constriction in a semiconducting two-dimensional (2D) electron system with a quantized conductance -- has been found as the building block of novel spintronic, and topological electronic circuits. They can also be used as readout electronic, charge sensor or switch in quantum nanocircuits. A short and impurity-free constriction with superconducting contacts is a Cooper pairs QPC analogue known as superconducting quantum point contact (SQPC). The technological development of such quantum devices has been prolonged due to the challenges of maintaining their geometrical requirement and near-unity superconductor-semiconductor interface transparency. Here, we develop advanced nanofabrication, material and device engineering techniques and report on an innovative realisation of nanoscale SQPC arrays with split gate technology in semiconducting 2D electron systems, exploiting the special gate tunability of the quantum wells, and report the first experimental observation of conductance quantization in hybrid InGaAs-Nb SQPCs. We observe reproducible quantized conductance at zero magnetic fields in multiple quantum nanodevices fabricated in a single chip and systematically investigate the quantum transport of SQPCs at low and high magnetic fields for their potential applications in quantum metrology, for extremely accurate voltage standards, and fault-tolerant quantum technologies.
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- 2023
200. Bordism categories and orientations of gauge theory moduli spaces
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Joyce, Dominic and Upmeier, Markus
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Mathematics - Algebraic Topology ,Mathematics - Algebraic Geometry ,Mathematics - Differential Geometry - Abstract
This is the second paper of a series that develops a bordism-theoretic point of view on orientations in enumerative geometry. The first paper is arXiv:2312.06818. This paper focuses on those applications to gauge theory that can be established purely using formal arguments and calculations from algebraic topology. We prove that the orientability of moduli spaces of connections in gauge theory for all principal $G$-bundles $P\to X$ over compact spin $n$-manifolds at once is equivalent to the vanishing of a certain morphism $\Omega_n^{\rm Spin}(\mathcal L BG)\to{\mathbb Z}_2$ on the $n$-dimensional spin bordism group of the free loop space of the classifying space of $G,$ and we give a complete list of all compact, connected Lie groups $G$ for which this holds. Moreover, we apply bordism techniques to prove that mod-$8$ Floer gradings exist for moduli spaces of $G_2$-instantons for all principal SU(2)-bundles. We also prove that there are canonical orientations for all principal U$(m)$-bundles $P\to X$ over compact spin $8$-manifolds satisfying $c_2(P)-c_1(P)^2=0.$ The proof is based on an interesting relationship to principal $E_8$-bundles. These canonical orientations play an important role in many conjectures about Donaldson-Thomas type invariants on Calabi-Yau $4$-folds, and resolve an apparent paradox in these conjectures., Comment: 71 pages, LaTeX
- Published
- 2023
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