151. CTCF is a DNA methylation-sensitive positive regulator of the INK/ARF locus
- Author
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Carmen Rodríguez, Frank Court, Julie Borgel, Guy Cathala, Thierry Forné, Jacques Piette, Institut de Génétique Moléculaire de Montpellier (IGMM), and Centre National de la Recherche Scientifique (CNRS)-Université de Montpellier (UM)
- Subjects
Transcriptional Activation ,CCCTC-Binding Factor ,Genetic Repressor Proteins/*metabolism Transcriptional Activation Tumor Suppressor Protein p14ARF/*genetics ,Biophysics ,Insulator (genetics) ,Biology ,Biochemistry ,Cell Line ,03 medical and health sciences ,0302 clinical medicine ,Transcription (biology) ,Cell Line, Tumor ,Neoplasms ,Tumor Suppressor Protein p14ARF ,Humans ,[SDV.BBM]Life Sciences [q-bio]/Biochemistry, Molecular Biology ,Promoter Regions, Genetic ,Molecular Biology ,Cyclin-Dependent Kinase Inhibitor p15 ,030304 developmental biology ,0303 health sciences ,Tumor Cyclin-Dependent Kinase Inhibitor p15/*genetics *DNA Methylation *Gene Expression Regulation ,Genes, p16 ,Promoter ,Cell Biology ,Methylation ,DNA Methylation ,Molecular biology ,3. Good health ,Chromatin ,Gene Expression Regulation, Neoplastic ,Repressor Proteins ,Neoplastic *Genes ,CpG site ,Genetic Loci ,CTCF ,030220 oncology & carcinogenesis ,DNA methylation ,p16 Genetic Loci Humans Neoplasms/*genetics Promoter Regions - Abstract
The INK4B–ARF–INK4A ( INK/ARF ) locus is composed of three tumor suppressor genes, which are kept silenced by DNA methylation in different cancer types. In addition, a non-coding RNA ( ANRIL ) is transcribed in the anti-sense orientation upstream of the ARF gene. The resulting divergent promoter region is bound by the chromatin insulator protein CTCF in association with histone H3 tri-methylated on lysine 4, irrespective of transcription of ANRIL and ARF . Methylation of the overlapping CpG island abolishes CTCF binding and the associated modification, which can be restored by 5-Aza-2′-deoxycytidine (5-Aza-dC) treatment. shRNA knock down of CTCF expression dramatically reduces the induction of ANRIL and ARF , but also that of INK4A and INK4B expression by 5-Aza-dC. We propose that CTCF is an essential factor for transcription of the INK/ARF locus and that abrogation of its binding by DNA methylation contributes to the permanent silencing of several genes of the locus in tumors.
- Published
- 2010
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