151. Genome-wide scan in a nationwide study sample of schizophrenia families in Finland reveals susceptibility loci on chromosomes 2q and 5q
- Author
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Joanne M. Meyer, Timo Partonen, Leena Peltonen, Alessandro Foti, Joseph D. Terwilliger, Kate Rinard, Joni A. Turunen, Jaana Suokas, Iiris Hovatta, Hannu Juvonen, Jesper Ekelund, Tiina Paunio, Jaana Suvisaari, Teppo Varilo, Alex Parker, Ritva Arajärvi, and Jouko Lönnqvist
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Linkage disequilibrium ,Genotype ,Genetic Linkage ,Schizophrenia (object-oriented programming) ,Genome Scan ,Pedigree chart ,Sample (statistics) ,Biology ,Genome ,Statistics, Nonparametric ,03 medical and health sciences ,0302 clinical medicine ,Genetics ,Humans ,Genetic Predisposition to Disease ,Molecular Biology ,Genetics (clinical) ,Finland ,030304 developmental biology ,0303 health sciences ,Chromosome ,General Medicine ,Pedigree ,Chromosomes, Human, Pair 1 ,Chromosomes, Human, Pair 2 ,Susceptibility locus ,Schizophrenia ,Chromosomes, Human, Pair 5 ,030217 neurology & neurosurgery ,Microsatellite Repeats - Abstract
We have previously carried out two genome-wide scans in samples of Finns ascertained for schizophrenia from national epidemiological registers. Here, we report data from a third genome scan in a nationwide Finnish schizophrenia study sample of 238 pedigrees with 591 affected individuals. Of the 238 pedigrees, 53 originated from a small internal isolate (IS) on the eastern border of Finland with a well established genealogical history and a small number of founders, who settled in the community 300 years ago. The total study sample of over 1200 individuals were genotyped, using 315 markers. In addition to the previously identified chromosome 1 locus, two new loci were identified on chromosomes 2q and 5q. The highest LOD scores were found in the IS families with marker D2S427 (Z(max) = 4.43) and in the families originating from the late settlement region with marker D5S414 (Z(max) = 3.56). In addition to 1q, 2q and 5q, some evidence for linkage emerged at 4q, 9q and Xp, the regions also suggested by our previous genome scans, whereas, in the nationwide study sample, the region at 7q failed to show further evidence of linkage. The chromosome 5q finding is of particular interest, since several other studies have also shown evidence for linkage in the vicinity of this locus.