Alpha-synuclein (αS) is a natively unfolded protein with a C-terminus that is enriched with acidic residues. Three independent mutants (i.e., A30P, A53T and E46K) were identified in the genetic study of familial Parkinson's disease. Wild-type αS has been shown to possess a consistent secondary structure composition (Thomas D. Kim et al, 2000) at various temperatures. Other studies indicate that the acidic tail of αS plays an important role in preventing the protein's aggregation (Sang Myun Park et al, 2002). Here we show that both the wild-type and mutated proteins have a similar response to heat in our MD simulations. The mutant models were obtained by mutating the NMR minimized average structure of αS (PDB ID = 1XQ8). Atomistic simulations for both wild-type and mutated αS in explicit water were conducted for at least 30 ns at four different temperatures (i.e., 310 K, 330 K, 350 K and 372 K) using the CHARMM22/CMAP force field. For wild-type αS, the percentage of α-helix changed by less than 5% from that of the NMR structure regardless of simulation temperature. For each mutant αS, the percentage of α-helix differed by 10% or less regardless of simulation temperature. In all simulations, the acidic tail of αS remained predominantly random coil. Moreover, at 372 K, beta sheet was temporarily observed within a small region (approximately 3%) for the wild-type and A30P mutant.