533 results on '"H. GOTOH"'
Search Results
152. A Trial to Establish an Archival Finding Aid Utilizing the Encoded Archival Description - 2
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H., Gotoh, C., Namba, S., Hanaoka, K., Matsuoka, Y., Takaiwa, and N., Abe
153. SGML-based Archival Finding Aid for Fusion Science Archives
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C., \\'Namba, H., Gotoh, Y., Takaiwa, S., Hanaoka, H., Iguchi, and M.\\', Sekimoto
154. A Trial to Establish Database by the Use of EAD
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H., Gotoh, N., Abe, Y., Takaiwa, C., Namba, K., Matsuoka, K., Kimura, S., Hanaoka, H., Obayashi, and J., Fujita
155. Utilization of Cloud-type Archival Finding Aid for Fusion Science Archives
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C., \\'Namba, H., Gotoh, Y., Takaiwa, S., Yagyu, S., Hemuki, H., Iguchi, M., Sekimoto, and E.\\', Kikutani
156. An Archival Finding Aid Based on the Encoded Archival Description
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C., \\'Namba, H., Gotoh, Y., Takaiwa, S., Hanaoka, K., Matsuoka, M., Sekimoto, and K.\\', Kimura
157. Comparison of Two Strategies for Cooperative Internet Searching System of Multiple Scientific Archives ? Open Source Software and Cloud-type Server
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Y., Takaiwa, H., Gotoh, C., Namba, H., Iguchi, K., Matsuoka, S., Hemuki, E., Kikutani, M., Sekimoto, Y., Nakamura, T., Kugo, M., Tanabashi, K., Kanaya, F., Ukegawa, T., Yoshikawa, K., Kimura, Y., Ohshima, S., Suzuki, M., Murakami, S., Yagyu, and Y., Yamada
158. Numerical Simulation of Evacuation Process in Malaysia By Using Distinct-Element-Method Based Multi-Agent Model.
- Author
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M S Abustan, N A Rahman, H Gotoh, E Harada, and S H A Talib
- Published
- 2016
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159. Comparison of electrical and optical detection of spin injection in L10-FePt/MgO/GaAs hybrid structures.
- Author
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R Ohsugi, J Shiogai, Y Kunihashi, M Kohda, H Sanada, T Seki, M Mizuguchi, H Gotoh, K Takanashi, and J Nitta
- Subjects
SPINTRONICS ,GALLIUM arsenide ,MAGNESIUM oxide ,MAGNETIC anisotropy ,KERR magneto-optical effect ,HANLE effect ,CRYSTALLOGRAPHY - Abstract
We have investigated comparative experiments for spin injection into semiconductor in an ordered L1
0 -FePt/MgO/n-GaAs hybrid structure using electrical and optical detection methods. Spatial-resolved Kerr rotation microscope image clearly demonstrates accumulation of perpendicularly oriented spins in an n-GaAs channel at zero magnetic field. On the other hand, electrical three-terminal Hanle measurement shows shorter spin lifetime than that of the optical measurement. It suggests that the spin lifetime obtained from three-terminal Hanle method originates from spins at the MgO/GaAs interface but not in the bulk GaAs channel. [ABSTRACT FROM AUTHOR]- Published
- 2015
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160. Glycogenolysis-Induced Astrocytic Serping1 Expression Regulates Neuroinflammatory Effects on Hippocampal neuron.
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Ishiyama M, Gotoh H, Oe S, Nomura T, Kitada M, and Ono K
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- Animals, Reactive Oxygen Species metabolism, Neuroinflammatory Diseases metabolism, Neuroinflammatory Diseases pathology, NF-kappa B metabolism, Mice, Inbred C57BL, Astrocytes metabolism, Astrocytes drug effects, Hippocampus metabolism, Hippocampus pathology, Neurons metabolism, Neurons drug effects, Glycogenolysis drug effects, Lipopolysaccharides pharmacology
- Abstract
The bacterial pathogen, lipopolysaccharide (LPS), elicits microglial response and induces cytokine secretion that subsequently activates astrocytes. Recent findings have indicated that LPS-induced activation of postnatal glial cells has led to alterations in synapse formation in hippocampal and cortical neurons, thereby resulting in a prolonged increased risk for seizure or depression. Nevertheless, its mechanisms remain to be fully elucidated. Cellular metabolism has recently gained recognition as a critical regulatory mechanism for the activation of peripheral immune cells, as it supplies the requisite energy and metabolite for their activation. In the present study, we report that LPS did not change the expression of reported astrocyte-derived synaptogenic genes in the postnatal hippocampus; however, it induced upregulation of astrocytic complement component regulator Serping1 within the postnatal hippocampus. As a regulatory mechanism, activation of glycogen degradation (glycogenolysis) governs the expression of a subset of inflammatory-responsive genes including Serping1 through reactive oxygen species (ROS)-NF-κB axis. Our study further demonstrated that glycogenolysis is implicated in neurotoxic phenotypes of astrocytes, such as impaired neuronal synaptogenesis or cellular toxicity. These findings suggested that activation of glycogenolysis in postnatal astrocytes is an essential metabolic pathway for inducing responses in inflammatory astrocytes., Competing Interests: Declarations. Ethics Approval: All the procedures of animal experiments were approved by the animal experiment committee of Kyoto Prefectural University of Medicine (M2022-208) or the animal ethics committee of Kansai Medical University (Hirakata, Japan; approval ID: 19–074). Consent to Participate: Not applicable. Consent for Publication: Not applicable. Competing Interests: The authors declare no competing interests., (© 2024. The Author(s), under exclusive licence to Springer Science+Business Media, LLC, part of Springer Nature.)
- Published
- 2025
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161. Induction of male-like mandibles in XX individuals of a stag beetle by gene knockdown of a feminizer gene transformer.
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Gotoh H, Ohtsu I, Umino T, Yamasaki YY, Minakuchi Y, Ito T, Toyoda A, and Kitano J
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- Animals, Male, Female, Gene Knockdown Techniques, Y Chromosome genetics, Insect Proteins genetics, Insect Proteins metabolism, Coleoptera genetics, Mandible, Sex Characteristics
- Abstract
Males and females share most of the genome, but many animals show different phenotypes between the sexes, known as sexual dimorphism. Many insect species show extreme sexual dimorphism, including beetles with "weapon traits" represented by extremely developed horns and mandibles. Existing studies of sex-specific development of beetle weapon traits suggest that sex-specific gene expression plays an important role. On the other hand, contributions of the Y-chromosome, which may potentially carry genes necessary for male development, to weapon trait expression have not been examined. In holometabolous insects, including beetles, the feminizing gene transformer (tra) is roughly conserved in its feminizing function. Only females express a functional isoform of Tra, which causes female differentiation. Knocking down tra in females leads to male tissue differentiation, enabling us to analyze male phenotypes in individuals lacking a Y-chromosome (XX-males). In this study, we investigate whether the Y-chromosome is necessary for stag beetles to express male-specific weapon traits by comparing tra-knockdown-induced XX-males with natural XY males. We show that XX-males could express weapons (enlarged mandibles) as in XY-males. These results suggest that the Y-chromosome does not have a major role in weapon trait expression in this species., (© 2024 Wiley Periodicals LLC.)
- Published
- 2025
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162. Diagnostic performance of two-dimensional shear wave elastography and attenuation imaging for fibrosis and steatosis assessment in chronic liver disease.
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Kobayashi T, Nakatsuka T, Sato M, Soroida Y, Hikita H, Gotoh H, Iwai T, Tateishi R, Kurano M, and Fujishiro M
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- Humans, Male, Female, Middle Aged, Adult, Chronic Disease, Aged, Liver diagnostic imaging, Liver pathology, ROC Curve, Liver Diseases diagnostic imaging, Elasticity Imaging Techniques methods, Liver Cirrhosis diagnostic imaging, Fatty Liver diagnostic imaging
- Abstract
Purpose: We investigated the diagnostic performance of two-dimensional shear wave elastography (2D-SWE) and attenuation imaging (ATI) in detecting fibrosis and steatosis in patients with chronic liver disease (CLD), comparing them with established methods., Methods: In 190 patients with CLD, 2D-SWE and vibration-controlled transient elastography (VCTE) were used for liver stiffness measurement (LSM), and ATI and controlled attenuation parameter (CAP) were used for steatosis quantification. The correlations between these new and established methods were analyzed., Results: Significant correlations were found between 2D-SWE and VCTE (r = 0.78, P < 0.001), and between ATI and CAP (r = 0.70, P < 0.001). Liver stiffness tended to be lower with 2D-SWE compared with that with VCTE, especially in cases with higher LSM, and ATI was less influenced by skin-capsular distance than CAP. Area under the receiver-operating characteristics curves (AUCs) and optimal cut-offs of 2D-SWE for diagnosing liver fibrosis stages F2, F3, and F4 were 0.73 (8.7 kPa), 0.79 (9.1 kPa), and 0.88 (11.6 kPa), respectively. The AUCs and optimal cut-offs of ATI for diagnosing hepatic steatosis grades S1, S2, and S3 were 0.91 (0.66 dB/cm/MHz), 0.80 (0.79 dB/cm/MHz), and 0.88 (0.86 dB/cm/MHz), respectively. A subgroup analysis of 86 patients with metabolic dysfunction-associated steatotic liver disease also demonstrated good performance for 2D-SWE and ATI., Conclusion: 2D-SWE and ATI performed comparably with conventional VCTE and CAP in evaluating CLD, offering reliable alternatives for diagnosing liver fibrosis and steatosis., Competing Interests: Declarations. Conflict of interest: The authors declare no conflicts of interest. Ethical approval: Approval of the research protocol: The clinical study protocol was approved by the University of Tokyo Medical Research Center Ethics Committee (approval number: 2019343NI). Informed consent: All patients provided written informed consent., (© 2024. The Author(s).)
- Published
- 2025
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163. Three-dimensional radiation dosimetry of carbon ion beams using surfactant hydrogels: Fundamental investigation.
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Toyohara M, Kusano Y, Kobayashi N, Gotoh H, Wada S, and Shimono Y
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- Radiotherapy Dosage, Carbon chemistry, Hydrogels chemistry, Radiometry, Heavy Ion Radiotherapy, Surface-Active Agents chemistry
- Abstract
Background: In carbon ion radiotherapy, accurate measurement of the three-dimensional (3D) absorbed dose distribution is critical for effectively targeting tumors. Although micellar gel dosimeters exhibit considerable potential for measuring 3D absorbed dose distributions, few studies have focused on radiotherapy using carbon ion beams., Purpose: This study investigated the applicability of the surfactant hydrogel dosimeter (SHD), a micellar gel dosimeter, to measuring a 3D dose absorbed through carbon ion beam irradiation., Methods: A cubic target region of 34 mm per side was established at a depth of 46 mm below the upper surface of an SHD specimen. Scanning irradiation was performed using a pencil beam of carbon ions at the Ion-beam Radiation Oncology Center in Kanagawa ("i-ROCK"), Japan, under irradiation conditions set by the treatment planning system ("Monaco for Carbon", Ver. 5.20, Elekta AB, Sweden) to create a spread-out Bragg peak within the target. The physical dose was set to 10 Gy at the isocenter, situated at the center of the target. The SHD responsiveness was measured twice using optical computed tomography (CT) ("Vista 15", Modus Medical Devices, Canada) for three irradiated specimens, and six types of measured optical attenuation coefficient (OAC) were obtained. To assess whether the OAC represented the absorbed dose expected in the treatment plan, we compared the relative distribution of the OAC and that of the absorbed dose. Relative fraction (RF) was used to measure the difference between the relative value of the OAC and that of the absorbed dose. Moreover, the distribution of OH radical (•OH) concentration obtained by Monte Carlo simulation ("PHITS" ver. 3.24 JAEA, Japan) and that of the OAC were compared., Results: In the direction of beam travel, the relative distribution of the OAC was lower than that of the absorbed dose. This discrepancy could be attributed to a decrease in the concentration of •OH produced by irradiation owing to the recombination reaction, which does not accurately reflect the absorbed dose. By contrast, the distributions in the plane perpendicular to the beam travel were consistent. The RF increased from ± 3% to ± 13% along the beam travel direction. The small RF in the plane perpendicular to the beam travel could be attributed to the constant distribution of linear energy transfer, regardless of the irradiation position, and the generation of radicals proportionally to the absorbed dose. The increase in RF along the beam travel direction was ascribed to ring artifacts in the irradiated region., Conclusion: The measurement of the absorbed dose distribution in the beam travel direction should be improved. The observed discrepancy is attributed to the reduced reactivity of the SHD due to a high liner energy transfer near the Bragg peak. However, the absorbed dose distribution can be effectively evaluated in the plane perpendicular to the direction of beam travel., (© 2024 The Author(s). Medical Physics published by Wiley Periodicals LLC on behalf of American Association of Physicists in Medicine.)
- Published
- 2025
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164. Adhesion and shrinkage transform the rounded pupal horn into an angular adult horn in Japanese rhinoceros beetle.
- Author
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Matsuda K, Adachi H, Gotoh H, Inoue Y, and Kondo S
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- Animals, Japan, Computer Simulation, Mandible, Pupa, Coleoptera
- Abstract
Clarifying the mechanisms underlying shape alterations during insect metamorphosis is important for understanding exoskeletal morphogenesis. The large horn of the Japanese rhinoceros beetle Trypoxylus dichotomus is the result of drastic metamorphosis, wherein it appears as a rounded shape during pupation and then undergoes remodeling into an angular adult shape. However, the mechanical mechanisms underlying this remodeling process remain unknown. In this study, we investigated the remodeling mechanisms of the Japanese rhinoceros beetle horn by developing a physical simulation. We identified three factors contributing to remodeling by biological experiments - ventral adhesion, uneven shrinkage, and volume reduction - which were demonstrated to be crucial for transformation using a physical simulation. Furthermore, we corroborated our findings by applying the simulation to the mandibular remodeling of stag beetles. These results indicated that physical simulation applies to pupal remodeling in other beetles, and the morphogenic mechanism could explain various exoskeletal shapes., Competing Interests: Competing interests The authors declare no competing or financial interests., (© 2024. Published by The Company of Biologists Ltd.)
- Published
- 2024
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165. Rapidly progressive cognitive impairment resulting in heavy psychosocial burden in a patient with Fabry disease undergoing hemodialysis: a case report.
- Author
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Ohsawa I, Onuki A, Oka F, Matsuoka Y, Makita Y, Kobayashi T, Kanaguchi Y, Nakamura Y, Suzuki Y, Goto Y, and Gotoh H
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- Humans, Male, Middle Aged, Disease Progression, Cost of Illness, Fabry Disease psychology, Fabry Disease complications, Renal Dialysis psychology, Cognitive Dysfunction etiology, Cognitive Dysfunction psychology, Enzyme Replacement Therapy
- Abstract
Background: Long-term enzyme replacement therapy (ERT) may improve prognosis in the patients with Fabry disease (FD), however, detail psychosocial burden has not been focused on long life expectancy. We experienced a male case of FD under ERT, he was placed on hemodialysis and presented rapidly progressive cognitive function., Case Presentation: A 51-year-old male patient with FD has been receiving ERT from age of 38 years. Hemodialysis was initiated at the age of 47 years. The patient experienced several attacks of cerebral infarction, and brain images demonstrated wide-spread asymptomatic ischemic lesions. His behavior became problematic at the age of 51 years. He often exhibited restlessness during hemodialysis sessions and failure to communicate effectively. The patient experienced impairment of attention and executive function, topographical disorientation, and amnesia. Consequently, it was necessary for medical staff and family members to monitor his behavior for safe extracorporeal circulation and daily life activities. Annual standardized neuropsychiatric testing revealed worsening of cognitive performance., Conclusions: Despite treating with long-term ERT, it is necessary to determine the psychosocial burden derived from the progression of cognitive impairment in patients with FD undergoing hemodialysis., (© 2024. The Author(s).)
- Published
- 2024
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166. Chronic ingestion of soy peptide supplementation reduces aggressive behavior and abnormal fear memory caused by juvenile social isolation.
- Author
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Tamura H, Miyazaki A, Kawamura T, Gotoh H, Yamamoto N, and Narita M
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- Animals, Male, Mice, Soybean Proteins pharmacology, Memory drug effects, Behavior, Animal drug effects, Prefrontal Cortex drug effects, Prefrontal Cortex metabolism, Disks Large Homolog 4 Protein metabolism, Cyclic AMP Response Element-Binding Protein metabolism, Social Isolation psychology, Fear drug effects, Aggression drug effects, Mice, Inbred C57BL, Dietary Supplements, Hippocampus metabolism, Hippocampus drug effects
- Abstract
Juvenile loneliness is a risk factor for psychopathology in later life. Deprivation of early social experience due to peer rejection has a detrimental impact on emotional and cognitive brain function in adulthood. Accumulating evidence indicates that soy peptides have many positive effects on higher brain function in rodents and humans. However, the effects of soy peptide use on juvenile social isolation are unknown. Here, we demonstrated that soy peptides reduced the deterioration of behavioral and cellular functions resulting from juvenile socially-isolated rearing. We found that prolonged social isolation post-weaning in male C57BL/6J mice resulted in higher aggression and impulsivity and fear memory deficits at 7 weeks of age, and that these behavioral abnormalities, except impulsivity, were mitigated by ingestion of soy peptides. Furthermore, we found that daily intake of soy peptides caused upregulation of postsynaptic density 95 in the medial prefrontal cortex and phosphorylation of the cyclic adenosine monophosphate response element binding protein in the hippocampus of socially isolated mice, increased phosphorylation of the adenosine monophosphate-activated protein kinase in the hippocampus, and altered the microbiota composition. These results suggest that soy peptides have protective effects against juvenile social isolation-induced behavioral deficits via synaptic maturation and cellular functionalization., (© 2024. The Author(s).)
- Published
- 2024
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167. Using Three-Dimensional Information to Predict and Interpret the Facial Selectivities of Nucleophilic Additions to Cyclic Ketones.
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Sakaguchi D and Gotoh H
- Subjects
- Models, Molecular, Molecular Conformation, Ketones chemistry
- Abstract
In this study, we devised a new method to predict facial selectivity by quantifying steric and orbital factors for the nucleophile approaching both π-plane faces. Using this method, we quantified the total electron density and frontier orbital distributions of 163 cyclic ketones with various structures and quantitatively explained the surface selectivity of 323 reactions with eight nucleophiles (BH
3 , LiAlH4 , NaBH4 , LiAl(OMe)3 H, MeLi, MeMgI, PhLi, and PnMgI). Importance analysis showed a large orbital effect for BH3 , LiAlH4 , and NaBH4 and the dominance of the steric effect for LiAl(OMe)3 H, MeLi, MeMgI, PhLi, and PhMgI. Our method analyzes three-dimensional features based on Gaussian cube files, which can be easily obtained using mainstream computational chemistry software packages, and this approach should prove useful for predicting the rates and facial selectivity of other reactions.- Published
- 2024
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168. Histological Observation of Helmet Development in the Treehopper Poppea capricornis (Insecta: Hemiptera: Membracidae).
- Author
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Sugiura K, Terano T, Adachi H, Hagiwara J, Matsuda K, Nishida K, Hanson P, Kondo S, and Gotoh H
- Subjects
- Animals, Head Protective Devices, Species Specificity, Hemiptera
- Abstract
The treehoppers (Hemiptera, Membracidae) are known for possessing a large three-dimensional structure called a helmet. Although some ecological functions of the helmet have already been elucidated, the developmental mechanisms underlying the complex and diverse morphology of the helmet are still largely unknown. The process of helmet formation was first described in Antianthe expansa , which possesses a simple roof-shaped helmet. However, the developmental process in species with more complex helmet morphologies remains largely unexplored. Hence, in this study, we used Poppea capricornis , which possesses a more complex helmet structure than A. expansa , to investigate the helmet development using paraffin sections, micro-CT, and scanning electronic microscopy. Our focus was on the overall helmet developmental process common to both species and formation of structures unique to Poppea and its comparison to Antianthe . As a result, we discovered that miniature structures were also formed in Poppea , similar to Antianthe , during the helmet formation. Common structures that were shared between the two species were discernible at this stage. Additionally, we observed that suprahumeral horns and posterior horns, two morphological traits specific to the Poppea helmet that are apparently similar anatomically, are formed through two distinctly different developmental mechanisms. The suprahumeral horns appeared to be formed by utilizing the nymphal suprahumeral bud as a mold, while we could not detect any nymphal structures potentially used for a mold in the posterior horns formation. Our findings suggest that the helmet formation mechanisms of Antianthe and Poppea employ a common mechanism but form species-specific structures by multiple mechanisms.
- Published
- 2024
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169. Effect on Rotation Speed on Thermal Dehydration Characteristics of Waste Gypsum Particles in a Constant Volume Rotary Vessel by Heating.
- Author
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Ogata K, Arimura K, Gotoh H, Satoh K, Tokumaru K, Kawahara H, and Sano H
- Abstract
This study examined the thermal dehydration characteristics of CaSO
4 ∙2H2 O in a constant-volume rotary vessel. The experiment used CaSO4 ∙2H2 O particles obtained from the crushed waste gypsum board. The particle size ranged from 850 to 2000 μm, and the experiment was carried out at varying rotation speeds of 1, 10, and 35 rpm, with the vessel temperature heated to 180 °C. Temperature and pressure inside the vessel were measured simultaneously using the thermocouple and the pressure sensor. The XRPD measurement analyzed the transition of CaSO4 ∙2H2 O after the heating of particles. The result showed that the temperature growth rate was similar for high rotation speeds of 10 and 35 rpm, while periodic temperature changes occurred at the low rotation speed of 1 rpm. A distinguishing flow pattern was observed at the low rotation speed, and the particles inside the vessel collapsed periodically downward. This particle behavior was related to the temperature distribution of the rotation speed of 1 rpm. Additionally, the pressure in the vessel increased rapidly at higher rotation speeds. This trend indicates the desorption of the crystal water of CaSO4 ∙2H2 O due to the increasing temperature in the case of high rotation speed. Also, the XRPD measurement results showed the appearance of CaSO4 ∙0.5H2 O under the higher rotation speed conditions, and the mass fraction of CaSO4 ∙0.5H2 O increased with the rotation speed. Overall, the present study suggests that rotation speed plays a crucial role in determining the heat conduction and heat transfer of particles in a constant-volume rotary vessel.- Published
- 2024
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170. DPPH Measurements and Structure-Activity Relationship Studies on the Antioxidant Capacity of Phenols.
- Author
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Yamauchi M, Kitamura Y, Nagano H, Kawatsu J, and Gotoh H
- Abstract
The consumption of foods that are high in antioxidant capacity is believed to contribute to good health. Moreover, the addition of highly antioxidant compounds to foods is believed to prevent food deterioration. Among the known antioxidants in food, phenols have been identified as the primary antioxidants. The 2,2-diphenyl-1-picrylhydrazyl (DPPH) assay is a simple, inexpensive, and rapid method widely used to evaluate the antioxidant capacity. Although the results of the DPPH assay depend on conditions such as the reaction time and concentration, the experimental conditions have not been standardized. Further, previous research that compared the antioxidant capacity determined through the DPPH assay largely focused on the differences in the specific substructures of approximately several dozen compounds. In this study, we conducted DPPH assays on 169 phenols under the same experimental conditions and summarized the correlation between their structures and activity. This DPPH assay study is the first single-laboratory investigation of the largest number of components in terms of their Trolox equivalent antioxidant capacities. Further, the analysis method was reproduced in an interlaboratory collaborative study, enabling its application in the reproduction and comparison of measurements in other laboratories.
- Published
- 2024
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171. Compound Classification and Consideration of Correlation with Chemical Descriptors from Articles on Antioxidant Capacity Using Natural Language Processing.
- Author
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Matsumoto Y and Gotoh H
- Subjects
- Flavonoids analysis, Flavonoids chemistry, Antioxidants pharmacology, Antioxidants analysis, Antioxidants chemistry, Natural Language Processing
- Abstract
In recent times, there has been a substantial increase in the number of articles focusing on antioxidants. However, the development of a comprehensive estimator for antioxidant capacity remains elusive due to the challenge of integrating information from these articles. Furthermore, the complexity of the antioxidant mechanism, which involves a multitude of factors, makes it difficult to establish a simple equation or correlation. Hence, there is a pressing need for a model that can effectively interpret the collective knowledge from these articles, especially from a chemistry perspective. In this research, we employed natural language processing techniques, specifically Word2Vec, to analyze articles related to antioxidant capacity. We extracted representation vectors of compound names from these documents and organized them into 10 distinct clusters. In our investigation of two of these clusters, we unveiled that the majority of the compounds in question were flavonoids and flavonoid glycosides. To establish a link between the descriptors and clusters, we utilized kernel density estimation and generated scatter plots to visualize their similarity. These visualizations clearly indicated a strong relationship between the descriptors and clusters, affirming that a tangible connection exists between word vectors and compound descriptors through a document analysis conducted with natural language processing techniques. This study represents a pioneering approach that utilizes document analysis to shed light on the field of antioxidant capacity research, marking a significant advancement in this domain.
- Published
- 2024
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172. Unveiling the role of differential growth in 3D morphogenesis: An inference method to analyze area expansion rate distribution in biological systems.
- Author
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Morikawa K, Morita S, Sakura K, Maeno A, Gotoh H, Niimi T, and Inoue Y
- Subjects
- Animals, Reproducibility of Results, Morphogenesis, Flowers, Plant Leaves, Coleoptera
- Abstract
The three-dimensional (3D) morphologies of many organs in organisms, such as the curved shapes of leaves and flowers, the branching structure of lungs, and the exoskeletal shape of insects, are formed through surface growth. Although differential growth, a mode of surface growth, has been qualitatively identified as 3D morphogenesis, a quantitative understanding of the mechanical contribution of differential growth is lacking. To address this, we developed a quantitative inference method to analyze the distribution of the area expansion rate, which governs the growth of surfaces into 3D morphology. To validate the accuracy of our method, we tested it on a basic 3D morphology that allowed for the theoretical derivation of the area expansion rate distribution, and then assessed the difference between the predicted outcome and the theoretical solution. We also applied this method to complex 3D shapes and evaluated its accuracy through numerical experiments. The findings of the study revealed a linear decrease in error on a log-log scale with an increase in the number of meshes in both evaluations. This affirmed the reliability of the predictions for meshes that are sufficiently refined. Moreover, we employed our methodology to analyze the developmental process of the Japanese rhinoceros beetle Trypoxylus dichotomus, which is characterized by differential growth regulating 3D morphogenesis. The results indicated a notably high rate of area expansion on the left and right edges of the horn primordium, which is consistent with the experimental evidence of a higher rate of cell division in these regions. Hence, these findings confirm the efficacy of the proposed method in analyzing biological systems., Competing Interests: Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2023 The Author(s). Published by Elsevier Ltd.. All rights reserved.)
- Published
- 2023
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173. A Neanderthal/Denisovan GLI3 variant contributes to anatomical variations in mice.
- Author
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Agata A, Ohtsuka S, Noji R, Gotoh H, Ono K, and Nomura T
- Abstract
Changes in genomic structures underlie phenotypic diversification in organisms. Amino acid-changing mutations affect pleiotropic functions of proteins, although little is known about how mutated proteins are adapted in existing developmental programs. Here we investigate the biological effects of a variant of the GLI3 transcription factor (GLI3
R1537C ) carried in Neanderthals and Denisovans, which are extinct hominins close to modern humans. R1537C does not compromise protein stability or GLI3 activator-dependent transcriptional activities. In contrast, R1537C affects the regulation of downstream target genes associated with developmental processes. Furthermore, genome-edited mice carrying the Neanderthal/Denisovan GLI3 mutation exhibited various alterations in skeletal morphology. Our data suggest that an extinct hominin-type GLI3 contributes to species-specific anatomical variations, which were tolerated by relaxed constraint in developmental programs during human evolution., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2023 Agata, Ohtsuka, Noji, Gotoh, Ono and Nomura.)- Published
- 2023
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174. Evolution of horn length and lifting strength in the Japanese rhinoceros beetle Trypoxylus dichotomus.
- Author
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Weber JN, Kojima W, Boisseau RP, Niimi T, Morita S, Shigenobu S, Gotoh H, Araya K, Lin CP, Thomas-Bulle C, Allen CE, Tong W, Lavine LC, Swanson BO, and Emlen DJ
- Subjects
- Animals, Male, Biomechanical Phenomena physiology, Lifting, Sex Characteristics, Japan, Biological Evolution, Coleoptera anatomy & histology, Coleoptera growth & development, Coleoptera physiology, Horns anatomy & histology, Horns growth & development, Horns physiology
- Abstract
What limits the size of nature's most extreme structures? For weapons like beetle horns, one possibility is a tradeoff associated with mechanical levers: as the output arm of the lever system-the beetle horn-gets longer, it also gets weaker. This "paradox of the weakening combatant" could offset reproductive advantages of additional increases in weapon size. However, in contemporary populations of most heavily weaponed species, males with the longest weapons also tend to be the strongest, presumably because selection drove the evolution of compensatory changes to these lever systems that ameliorated the force reductions of increased weapon size. Therefore, we test for biomechanical limits by reconstructing the stages of weapon evolution, exploring whether initial increases in weapon length first led to reductions in weapon force generation that were later ameliorated through the evolution of mechanisms of mechanical compensation. We describe phylogeographic relationships among populations of a rhinoceros beetle and show that the "pitchfork" shaped head horn likely increased in length independently in the northern and southern radiations of beetles. Both increases in horn length were associated with dramatic reductions to horn lifting strength-compelling evidence for the paradox of the weakening combatant-and these initial reductions to horn strength were later ameliorated in some populations through reductions to horn length or through increases in head height (the input arm for the horn lever system). Our results reveal an exciting geographic mosaic of weapon size, weapon force, and mechanical compensation, shedding light on larger questions pertaining to the evolution of extreme structures., Competing Interests: Declaration of interests The authors declare no competing interests., (Copyright © 2023 Elsevier Inc. All rights reserved.)
- Published
- 2023
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175. Malnutrition- inflammation- atherosclerosis (MIA) syndrome associates with periodontitis in end-stage renal disease patients undergoing hemodialysis: a cross-sectional study.
- Author
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Mikami R, Mizutani K, Gohda T, Matsuyama Y, Gotoh H, Nakagawa K, Takemura S, Aoyama N, Matsuura T, Kido D, Takeda K, Saito N, Izumi Y, and Iwata T
- Subjects
- Humans, Aged, Cross-Sectional Studies, Inflammation complications, Renal Dialysis adverse effects, Periodontitis complications, Kidney Failure, Chronic complications, Kidney Failure, Chronic therapy, Atherosclerosis complications, Malnutrition complications
- Abstract
Malnutrition-inflammation-atherosclerosis (MIA) syndrome is a significant risk factor for mortality in patients undergoing hemodialysis. This study aimed to investigate the association between MIA syndrome and oral health status in hemodialysis patients. A cross-sectional study was conducted on 254 hemodialysis patients. Comprehensive medical and dental examinations were performed. Three components were included to define MIA syndrome: Geriatric Nutritional Risk Index, serum high-sensitivity C-reactive protein, and history of cardiovascular events as indicators of malnutrition, inflammation, and atherosclerosis, respectively. The association of MIA syndrome components with periodontitis and occlusal support was examined by multiple-ordered logistic regression analysis. Of 254 participants, 188 (74.0%) had at least one component of MIA syndrome. After adjusting for possible confounding factors, severe periodontitis was significantly associated with presence of more components of MIA syndrome (odds ratio [OR]: 2.64, 95% confidence interval [CI], 1.44-4.84, p = 0.002) and inflammation and malnutrition components (OR: 2.47 and 3.46, 95% CI 1.16-5.28 and 1.70-7.05, p = 0.020 and 0.001). On the other hand, occlusal support, evaluated by Eichner index, was not significantly associated with MIA syndrome or any of its components. In conclusion, periodontitis is associated with MIA syndrome, particularly with inflammation and malnutrition in hemodialysis patients, independent of occlusal support., (© 2023. The Author(s).)
- Published
- 2023
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176. Gut Microbiome and Microbiome-Derived Metabolites in Patients with End-Stage Kidney Disease.
- Author
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Koshida T, Gohda T, Sugimoto T, Asahara T, Asao R, Ohsawa I, Gotoh H, Murakoshi M, Suzuki Y, and Yamashiro Y
- Subjects
- Humans, Cross-Sectional Studies, Gastrointestinal Microbiome, Diabetes Mellitus, Type 2, Kidney Failure, Chronic therapy, Renal Insufficiency, Chronic therapy, Microbiota
- Abstract
The composition of the gut microbiome is altered in patients with chronic kidney disease (CKD). Dysbiosis leads to decreased levels of stool organic acids (OAs) and systemic inflammation, followed by accumulation of uremic toxins (UTs) and the development of end-stage kidney disease (ESKD). We assessed the relationship between the microbiome and UT levels or the development of ESKD by comparing patients undergoing hemodialysis (HD) and those with normal renal function (NRF). This cross-sectional study recruited 41 patients undergoing HD and 38 sex- and age-matched patients with NRF, and gut microbiome, levels of plasma UTs, inflammatory markers, and stool OAs were compared. The indices of beta-diversity differed significantly between patients with NRF and those undergoing HD, and between patients undergoing HD with and without type 2 diabetes. The levels of stool total OA, inflammatory markers, and UTs differed significantly between the patients with NRF and those undergoing HD. The combined main effects of type 2 diabetes and kidney function status were accumulation of indoxyl sulfate and p-cresyl sulfate. The relative abundances of Negativicutes and Megamonas were associated with development of ESKD and with the levels of UTs, even after adjustment for factors associated with the progression of ESKD. The present study indicates that the gut environment differs between patients with NRF and those undergoing HD and between patients undergoing HD with and without type 2 diabetes. Moreover, ESKD patients with diabetes accumulate more UTs derived from the gut microbiome, which might be associated with cardio-renal diseases and poor prognosis.
- Published
- 2023
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177. The draft genome sequence of the Japanese rhinoceros beetle Trypoxylus dichotomus septentrionalis towards an understanding of horn formation.
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Morita S, Shibata TF, Nishiyama T, Kobayashi Y, Yamaguchi K, Toga K, Ohde T, Gotoh H, Kojima T, Weber JN, Salvemini M, Bino T, Mase M, Nakata M, Mori T, Mori S, Cornette R, Sakura K, Lavine LC, Emlen DJ, Niimi T, and Shigenobu S
- Subjects
- Animals, Female, Male, Phenotype, Sex Characteristics, Coleoptera genetics
- Abstract
The Japanese rhinoceros beetle Trypoxylus dichotomus is a giant beetle with distinctive exaggerated horns present on the head and prothoracic regions of the male. T. dichotomus has been used as a research model in various fields such as evolutionary developmental biology, ecology, ethology, biomimetics, and drug discovery. In this study, de novo assembly of 615 Mb, representing 80% of the genome estimated by flow cytometry, was obtained using the 10 × Chromium platform. The scaffold N50 length of the genome assembly was 8.02 Mb, with repetitive elements predicted to comprise 49.5% of the assembly. In total, 23,987 protein-coding genes were predicted in the genome. In addition, de novo assembly of the mitochondrial genome yielded a contig of 20,217 bp. We also analyzed the transcriptome by generating 16 RNA-seq libraries from a variety of tissues of both sexes and developmental stages, which allowed us to identify 13 co-expressed gene modules. We focused on the genes related to horn formation and obtained new insights into the evolution of the gene repertoire and sexual dimorphism as exemplified by the sex-specific splicing pattern of the doublesex gene. This genomic information will be an excellent resource for further functional and evolutionary analyses, including the evolutionary origin and genetic regulation of beetle horns and the molecular mechanisms underlying sexual dimorphism., (© 2023. The Author(s).)
- Published
- 2023
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178. Feature Selection for the Interpretation of Antioxidant Mechanisms in Plant Phenolics.
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Fujimoto T and Gotoh H
- Subjects
- Reactive Oxygen Species chemistry, Plant Extracts chemistry, Plants, Antioxidants pharmacology, Antioxidants chemistry, Phenols chemistry
- Abstract
Antioxidants, represented by plant phenolics, protect living tissues by scavenging reactive oxygen species through diverse reaction mechanisms. Research on antioxidants is often individualized, for example, focusing on the evaluation of their activity against a single reactive oxygen species or examining the antioxidant properties of compounds with similar structures. In this study, multivariate analysis was used to comprehensively examine antioxidant properties. Eighteen features were selected to explain the results of the antioxidant capacity tests. These selected features were then evaluated by supervised learning, using the results of the antioxidant capacity assays. Dimension-reduction techniques were also used to represent the compound space with antioxidants as a two-dimensional distribution. A small amount of data obtained from several assays provided us with comprehensive information on the relationships between the structures and activities of antioxidants.
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- 2023
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179. Synthesis and Late-Stage Diversification of BN-Embedded Dibenzocorannulenes as Efficient Fluorescence Organic Light-Emitting Diode Emitters.
- Author
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Okada N, Nakatsuka S, Kawasumi R, Gotoh H, Yasuda N, and Hatakeyama T
- Subjects
- Fluorescence, Alkynes, Nitrogen
- Abstract
We report the synthesis and late-stage diversification of a new class of hetero-buckybowl, BN-embedded dibenzocorannulenes (B
2 N2 -DBCs). The synthesis is achieved via one-shot halogenative borylation, comprising the nitrogen-directed haloboration of alkyne and an intramolecular bora-Friedel-Crafts reaction, which provides BN-embedded dibenzocorannulene possessing two bromo substituents (B2 N2 -DBC-Br). B2 N2 -DBC-Br undergoes diversification via coupling reactions to provide a variety of arylated derivatives (B2 N2 -DBC-R), exhibiting strong blue fluorescence. An organic light-emitting diode (OLED) employing one of the derivatives as an emitter exhibited a high external quantum efficiency of 6.6 % and long operational lifetime of 907 h at an initial luminance of 1000 cd m-2 , indicating the significant potential for the development of efficient and stable hetero-buckybowl-based OLED materials., (© 2022 Wiley-VCH GmbH.)- Published
- 2023
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180. Disruption of the anterior commissure in Olig2 deficient mice.
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Gotoh H, Maruyama K, Yoshii K, Yamauchi N, Nomura T, Ohtsuka S, Shirasaki R, Takebayashi H, and Ono K
- Subjects
- Animals, Mice, Mice, Knockout, Oligodendrocyte Transcription Factor 2 genetics, Oligodendrocyte Transcription Factor 2 metabolism, Prosencephalon metabolism, Axons physiology
- Abstract
In the present study, we examined neural circuit formation in the forebrain of the Olig2 knockout (Olig2-KO) mouse model and found disruption of the anterior commissure at the late foetal stage. Axon bundles of the anterior commissure encountered the wall of the third ventricle and ceased axonal extension. L1-CAM immunohistochemistry showed that Olig2-KO mice lose decussation formation in the basal forebrain. DiI tracing revealed that the thin bundles of the anterior commissure axons crossed the midline but ceased further extension into the deep part of the contralateral side. Furthermore, some fractions of DiI-labelled axons were oriented dorsolaterally, which was not observed in the control mouse forebrain. The rostral part of the third ventricle was much wider in the Olig2-KO mice than in wild-type mice, which likely resulted in the delay of midline fusion and subsequent delay and malformation of the anterior commissure. We analysed gene expression alterations in the Olig2-KO mice using a public database and found multiple genes, which are related to axon guidance and epithelial-mesenchymal transition, showing subtle expression changes. These results suggest that Olig2 is essential for anterior commissure formation, likely by regulating multiple biological processes., (© 2022 Federation of European Neuroscience Societies and John Wiley & Sons Ltd.)
- Published
- 2023
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181. Ultrastructural characteristics of oligodendrocyte precursor cells in the early postnatal mouse optic nerve observed by serial block-face scanning electron microscopy.
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Ono K, Gotoh H, Nomura T, Morita T, Baba O, Matsumoto M, Saitoh S, and Ohno N
- Subjects
- Mice, Animals, Microscopy, Electron, Scanning, Optic Nerve, Eye, Centrioles, Antioxidants, Oligodendrocyte Precursor Cells
- Abstract
Oligodendrocyte precursor cells (OPC) arise from restricted regions of the central nervous system (CNS) and differentiate into myelin-forming cells after migration, but their ultrastructural characteristics have not been fully elucidated. This study examined the three-dimensional ultrastructure of OPCs in comparison with other glial cells in the early postnatal optic nerve by serial block-face scanning electron microscopy. We examined 70 putative OPCs (pOPC) that were distinct from other glial cells according to established morphological criteria. The pOPCs were unipolar in shape with relatively few processes, and their Golgi apparatus were localized in the perinuclear region with a single cisterna. Astrocytes abundant in the optic nerve were distinct from pOPCs and had a greater number of processes and more complicated Golgi apparatus morphology. All pOPCs and astrocytes contained a pair of centrioles (basal bodies). Among them, 45% of pOPCs extended a short cilium, and 20% of pOPCs had centrioles accompanied by vesicles, whereas all astrocytes with basal bodies had cilia with invaginated ciliary pockets. These results suggest that the fine structures of pOPCs during the developing and immature stages may account for their distinct behavior. Additionally, the vesicular transport of the centrioles, along with a short cilium length, suggests active ciliogenesis in pOPCs., Competing Interests: The authors have declared that no competing interests exist., (Copyright: © 2022 Ono et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.)
- Published
- 2022
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182. STAT3 transcriptionally regulates the expression of genes related to glycogen metabolism in developing motor neurons.
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Gotoh H, Chimhanda TA, Nomura T, and Ono K
- Subjects
- Glycogen metabolism, Motor Neurons metabolism, Gene Expression Regulation, Glycogen Synthase genetics, Glycogen Synthase metabolism, Glycogenolysis
- Abstract
Motor neurons in the spinal cord are essential for movement. During the embryonic period, developing motor neurons store glycogen to protect against hypoglycemic and hypoxic stress. However, the mechanisms by which glycogen metabolism is regulated in motor neurons remain unclear. We herein investigated the transcriptional regulation of genes related to glycogen metabolism in the developing spinal cord. We focused on the regulatory mechanism of glycogen synthase (Gys1) and glycogen phosphorylase brain isoform (PygB), which play central roles in glycogen metabolism, and found that the transcription factor STAT3 regulated the expression of Gys1 and PygB via cis-regulatory promoter sequences in the developing spinal cord. These results suggest that STAT3 is important for the regulation of glycogen metabolism during motor neuron development., (© 2022 Federation of European Biochemical Societies.)
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- 2022
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183. Evaluation of Body Size Indicators for Morphological Analyses in Two Sister Species of Genus Dorcus (Coleoptera, Lucanidae).
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Ohtsu I, Chikami Y, Umino T, and Gotoh H
- Subjects
- Animals, Body Size, Coleoptera anatomy & histology
- Abstract
The relationship between trait and body size, i.e., the scaling relationship or static allometry, is an essential concept for investigating trait size. However, usage of an inappropriate body size indicator can lead to misinterpretation of morphology. In this study, we examined several possible body size indicators in two closely related stag beetle species, Dorcus rectus and Dorcus amamianus. We raised animals in captivity and used pupal weight as a measure of true, or overall body size, and then evaluated six adult morphological traits to test whether these traits could be reliably used as body size indicators in static scaling relationship comparisons. We analyzed two comparisons, between sexes in same species and between species in same sex. We showed that the most appropriate body size indicators differ depending on the comparisons. Our results indicated that the scaling relationship of focal traits could be over- or under-estimated depending on which body size indicators are used., (© The Author(s) 2022. Published by Oxford University Press on behalf of Entomological Society of America.)
- Published
- 2022
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184. Recent advances in understanding horn formation in the Japanese rhinoceros beetle Trypoxylus dichotomus using next-generation sequencing technology.
- Author
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Morita S, Sakura K, Gotoh H, Emlen DJ, and Niimi T
- Subjects
- Animals, High-Throughput Nucleotide Sequencing, Japan, Perissodactyla genetics, Sex Characteristics, Technology, Coleoptera anatomy & histology
- Abstract
The exaggerated horns of beetles are attractive models for studying the origin of novel traits and morphological evolution. Closely related species often differ profoundly in the size, number, and shape of their horns, and in the body region from which they extend. In addition, beetle horns exhibit exquisite nutrition-dependent phenotypic plasticity, leading to disproportionate growth of the horns in the largest, best-condition individuals and much smaller - even stunted - horn sizes in poor-condition individuals. These exciting phenomena in beetle horns have recently been revealed at the molecular level with the advent of next-generation sequencing. This section reviews the latest research on a horned beetle, the Japanese rhinoceros beetle Trypoxylus dichotomus, whose genome was recently sequenced., (Copyright © 2022 Elsevier Inc. All rights reserved.)
- Published
- 2022
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185. Association of type 2 diabetes with periodontitis and tooth loss in patients undergoing hemodialysis.
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Mikami R, Mizutani K, Matsuyama Y, Gohda T, Gotoh H, Aoyama N, Matsuura T, Kido D, Takeda K, Saito N, Fujiwara T, Izumi Y, and Iwata T
- Subjects
- Female, Humans, Male, Cross-Sectional Studies, Renal Dialysis, Diabetes Mellitus, Type 2 complications, Periodontitis complications, Tooth Loss complications
- Abstract
Background: Limited evidence are available regarding the influence of diabetes on periodontitis in hemodialysis patients, although the association between diabetes and periodontal disease is well-known., Objective: This study aimed to investigate the influence of type 2 diabetes mellitus (T2D) and its control level on periodontal disease and the number of missing teeth in patients undergoing hemodialysis., Subjects and Methods: A single-center cross-sectional study was conducted on 246 Japanese patients with end-stage renal disease undergoing hemodialysis. Comprehensive medical and dental examinations were performed. The association between severity of periodontitis and T2D was examined by multiple ordered logistic regression analysis. A multiple linear regression model was fitted to assess the association of periodontal probing depth (PPD) ≥4 mm and the number of missing teeth with T2D (n = 125). A subgroup analysis involving only the patients with T2D was performed to investigate the factors associated with missing teeth among them., Results: After adjusting for confounders, the classification of periodontitis severity was significantly advanced in patients with T2D (odds ratio: 1.64, 95% confidence interval [CI]: 1.02-2.65, p = 0.04). The proportion of PPD≥4 mm sites and the number of missing teeth was significantly associated with T2D (coefficient: 4.1 and 5.7, 95% CI: 0.2-8.0 and 3.4-8.0, p = 0.04 and <0.001, respectively). Subgroup analysis of T2D patients revealed that glycoalbumin levels (coefficient: 0.4, 95% CI: 0.03-0.80, p = 0.03), but not hemoglobin A1c levels (coefficient: 0.8, 95% CI: -1.0-2.7, p = 0.37), were significantly associated with the number of missing teeth., Conclusion: T2D was significantly associated with periodontitis and the number of missing teeth in hemodialysis patients. Moreover, it is first documented that poor glycemic control, as determined by glycoalbumin levels, was significantly associated with the number of missing teeth in hemodialysis patients with T2D., Competing Interests: The authors have declared that no competing interests exist.
- Published
- 2022
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186. Development of novel deep multimodal representation learning-based model for the differentiation of liver tumors on B-mode ultrasound images.
- Author
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Sato M, Kobayashi T, Soroida Y, Tanaka T, Nakatsuka T, Nakagawa H, Nakamura A, Kurihara M, Endo M, Hikita H, Sato M, Gotoh H, Iwai T, Tateishi R, Koike K, and Yatomi Y
- Subjects
- Area Under Curve, Humans, Neural Networks, Computer, Ultrasonography methods, Liver Neoplasms diagnostic imaging
- Abstract
Background and Aim: Recently, multimodal representation learning for images and other information such as numbers or language has gained much attention. The aim of the current study was to analyze the diagnostic performance of deep multimodal representation model-based integration of tumor image, patient background, and blood biomarkers for the differentiation of liver tumors observed using B-mode ultrasonography (US)., Method: First, we applied supervised learning with a convolutional neural network (CNN) to 972 liver nodules in the training and development sets to develop a predictive model using segmented B-mode tumor images. Additionally, we also applied a deep multimodal representation model to integrate information about patient background or blood biomarkers to B-mode images. We then investigated the performance of the models in an independent test set of 108 liver nodules., Results: Using only the segmented B-mode images, the diagnostic accuracy and area under the curve (AUC) values were 68.52% and 0.721, respectively. As the information about patient background and blood biomarkers was integrated, the diagnostic performance increased in a stepwise manner. The diagnostic accuracy and AUC value of the multimodal DL model (which integrated B-mode tumor image, patient age, sex, aspartate aminotransferase, alanine aminotransferase, platelet count, and albumin data) reached 96.30% and 0.994, respectively., Conclusion: Integration of patient background and blood biomarkers in addition to US image using multimodal representation learning outperformed the CNN model using US images. We expect that the deep multimodal representation model could be a feasible and acceptable tool for the definitive diagnosis of liver tumors using B-mode US., (© 2021 Journal of Gastroenterology and Hepatology Foundation and John Wiley & Sons Australia, Ltd.)
- Published
- 2022
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187. Induced Radionuclides and Their Activity Concentration in Gel Dosimeters Irradiated by Carbon Ion Beam.
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Toyohara M, Minohara S, Kusano Y, Gotoh H, Tanaka Y, Yuhara M, Yamashita Y, and Shimono Y
- Abstract
Radioactivity was measured in a micellar gel dosimeter, a polymer gel dosimeter, and water was irradiated by carbon ion beams at various beam energy conditions. Monte Carlo simulation was also performed to estimate the radioactivity. Short-lived positron-emitting nuclides were observed immediately after irradiation, but they decayed rapidly into the background. At 24 h post-irradiation, the dominant measured radioactivity was of
7 Be. The simulation also showed minor activity of24 Na and3 H; however, they were not experimentally observed. The measured radioactivity was independent of the type of gel dosimeter under all irradiation conditions, suggesting that the radioactivity was induced by the interaction of carbon ions with water (the main component of the gel dosimeters). The ratio between the simulated and measured radioactivity was within 0.9-1.5. The activity concentration of7 Be was found to be less than 1/10 of the value derived using the exemption concept proposed by the International Atomic Energy Agency. This result should be applicable to irradiated gel dosimeters containing mainly water and 0-4 wt.% C and 0-1.7 wt.% N.- Published
- 2022
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188. Cell Type-Specific Transcriptional Control of Gsk3β in the Developing Mammalian Neocortex.
- Author
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Nomura T, Gotoh H, Kiyonari H, and Ono K
- Abstract
Temporal control of neurogenesis is central for the development and evolution of species-specific brain architectures. The balance between progenitor expansion and neuronal differentiation is tightly coordinated by cell-intrinsic and cell-extrinsic cues. Wnt signaling plays pivotal roles in the proliferation and differentiation of neural progenitors in a temporal manner. However, regulatory mechanisms that adjust intracellular signaling amplitudes according to cell fate progression remain to be elucidated. Here, we report the transcriptional controls of Gsk3 β, a critical regulator of Wnt signaling, in the developing mouse neocortex. Gsk3 β expression was higher in ventricular neural progenitors, while it gradually declined in differentiated neurons. We identified active cis -regulatory module (CRM) of Gsk3 β that responded to cell type-specific transcription factors, such as Sox2, Sox9, and Neurogenin2. Furthermore, we found extensive conservation of the CRM among mammals but not in non-mammalian amniotes. Our data suggest that a mammalian-specific CRM drives the cell type-specific activity of Gsk3 β to fine tune Wnt signaling, which contributes to the tight control of neurogenesis during neocortical development., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2022 Nomura, Gotoh, Kiyonari and Ono.)
- Published
- 2022
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189. Mechanism for the photodegradation of 9,10-dibutoxyanthracene in the presence of air.
- Author
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Seto R, Sato A, Iuchi K, Himori S, and Gotoh H
- Subjects
- Photolysis, Oxygen, Singlet Oxygen
- Abstract
The photoreactivity of anthracene has been previously verified for a range of its derivatives. 9,10-Dibutoxyanthracene is commonly used as an electron transfer sensitizer for photopolymerization because of its favorable optical properties. This study experimentally demonstrated that 9,10-dibutoxyanthracene produces an endoperoxide species upon reaction with the oxygen present in air. A secondary decomposition product formed during the photodecomposition of the endoperoxide species was also isolated and identified. The proposed reaction pathway is supported by singlet oxygen scavenger studies and calculations of the singlet-triplet transition energies. Our findings suggest that 9,10-dibutoxyanthracene can be used as a photo-induced oxygen scavenger., Competing Interests: The authors have declared that no competing interests exist.
- Published
- 2022
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190. Hydrophilic oxygen radical absorbance capacity values of low-molecular-weight phenolic compounds containing carbon, hydrogen, and oxygen.
- Author
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Sakurai S, Kikuchi A, and Gotoh H
- Abstract
The antioxidant capacity of an antioxidant reflects its ability to remove reactive oxygen species (ROS). In this study, the hydrophilic oxygen radical absorbance capacity (H-ORAC) method was used to quantitatively evaluate the antioxidant capacities of natural phenols and their derivatives against peroxyl radicals. This method was comprehensively applied to low-molecular-weight phenols to construct a database. Although no macroscopic correlation was observed for values related to the antioxidant capacity expression, we observed a difference in the trend of the H-ORAC values for each functional group. Thus, this database will serve as a new benchmark and tool for molecular design., Competing Interests: There are no conflicts to declare., (This journal is © The Royal Society of Chemistry.)
- Published
- 2022
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191. Genomic and transcriptomic analyses of the subterranean termite Reticulitermes speratus : Gene duplication facilitates social evolution.
- Author
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Shigenobu S, Hayashi Y, Watanabe D, Tokuda G, Hojo MY, Toga K, Saiki R, Yaguchi H, Masuoka Y, Suzuki R, Suzuki S, Kimura M, Matsunami M, Sugime Y, Oguchi K, Niimi T, Gotoh H, Hojo MK, Miyazaki S, Toyoda A, Miura T, and Maekawa K
- Subjects
- Animals, Biological Evolution, Cellulases metabolism, Female, Gene Duplication, Gene Expression, Gene Expression Profiling, Insect Proteins genetics, Isoptera genetics, Genomics, Insect Proteins metabolism, Isoptera physiology, Social Evolution, Transcriptome
- Abstract
Termites are model social organisms characterized by a polyphenic caste system. Subterranean termites (Rhinotermitidae) are ecologically and economically important species, including acting as destructive pests. Rhinotermitidae occupies an important evolutionary position within the clade representing a transitional taxon between the higher (Termitidae) and lower (other families) termites. Here, we report the genome, transcriptome, and methylome of the Japanese subterranean termite Reticulitermes speratus Our analyses highlight the significance of gene duplication in social evolution in this termite. Gene duplication associated with caste-biased gene expression was prevalent in the R. speratus genome. The duplicated genes comprised diverse categories related to social functions, including lipocalins (chemical communication), cellulases (wood digestion and social interaction), lysozymes (social immunity), geranylgeranyl diphosphate synthase (social defense), and a novel class of termite lineage-specific genes with unknown functions. Paralogous genes were often observed in tandem in the genome, but their expression patterns were highly variable, exhibiting caste biases. Some of the assayed duplicated genes were expressed in caste-specific organs, such as the accessory glands of the queen ovary and the frontal glands of soldier heads. We propose that gene duplication facilitates social evolution through regulatory diversification, leading to caste-biased expression and subfunctionalization and/or neofunctionalization conferring caste-specialized functions., Competing Interests: The authors declare no competing interest., (Copyright © 2022 the Author(s). Published by PNAS.)
- Published
- 2022
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192. Temperature sensitivity of Notch signaling underlies species-specific developmental plasticity and robustness in amniote brains.
- Author
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Nomura T, Nagao K, Shirai R, Gotoh H, Umeda M, and Ono K
- Subjects
- Animals, Cell Membrane metabolism, Chick Embryo, Chickens, Embryo, Mammalian, Gene Expression Regulation, Developmental, Jagged-1 Protein genetics, Jagged-1 Protein metabolism, Mice, Mice, Inbred ICR, Neocortex cytology, Neocortex growth & development, Neurons cytology, Phosphatidylethanolamines biosynthesis, Protein Isoforms genetics, Protein Isoforms metabolism, Receptor, Notch1 metabolism, Species Specificity, Temperature, Transcription Factor HES-1 genetics, Transcription Factor HES-1 metabolism, Turtles, Body Temperature genetics, Embryonic Development genetics, Neocortex metabolism, Neurons metabolism, Receptor, Notch1 genetics, Signal Transduction genetics
- Abstract
Ambient temperature significantly affects developmental timing in animals. The temperature sensitivity of embryogenesis is generally believed to be a consequence of the thermal dependency of cellular metabolism. However, the adaptive molecular mechanisms that respond to variations in temperature remain unclear. Here, we report species-specific thermal sensitivity of Notch signaling in the developing amniote brain. Transient hypothermic conditions increase canonical Notch activity and reduce neurogenesis in chick neural progenitors. Increased biosynthesis of phosphatidylethanolamine, a major glycerophospholipid components of the plasma membrane, mediates hypothermia-induced Notch activation. Furthermore, the species-specific thermal dependency of Notch signaling is associated with developmental robustness to altered Notch signaling. Our results reveal unique regulatory mechanisms for temperature-dependent neurogenic potentials that underlie developmental and evolutionary adaptations to a range of ambient temperatures in amniotes., (© 2022. The Author(s).)
- Published
- 2022
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193. Linagliptin Inhibits Interleukin-6 Production Through Toll-Like Receptor 4 Complex and Lipopolysaccharide-Binding Protein Independent Pathway in vitro Model.
- Author
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Saito H, Nakamura Y, Inagaki M, Yamadera S, Misawa H, Sato N, Oguchi T, Inagaki T, Tsuji Y, Tsuji M, Ohsawa I, Gotoh H, and Kiuchi Y
- Abstract
Purpose: Lipopolysaccharides (LPS) induce inflammation by binding to the Toll-like receptor (TLR) 4 complex, including LPS-binding protein (LBP). The anti-inflammatory effects of linagliptin in LPS-induced inflammation in the TLR4-independent pathway have not been examined before. We examined the anti-inflammatory effects of linagliptin in the TLR4- and the LBP-independent pathway., Methods: U937 cells were cultured in the medium supplemented with 10% fetal bovine serum (FBS) and treated with 100 nM phorbol myristate acetate for 48 h. Cells were then left untreated or were treated with 10 μg/mL anti-TLR4 antibodies alone or in combination with linagliptin for 1 h in media supplemented with or without 10% FBS. The cells were divided into 5 groups: a) control cells (untreated) b) cells treated with LPS c) cells treated with 10 μg/mL anti-TLR4 antibodies d) cells treated with LPS and 10 μg/mL anti-TLR4 antibodies and e) cells treated with LPS, 10 μg/mL anti-TLR4 antibodies, and linagliptin. The LPS concentrations used were 50 pg/mL or 100 pg/mL for cells treated in the presence of 10% FBS and 100 pg/mL or 1 μg/mL for cells treated in the absence of FBS. Linagliptin concentrations of 1 nM, 10 nM, and 100 nM were used for treatment. The supernatants were analyzed for interleukin (IL)-6 production after 24 h of various treatments., Results: LPS increased IL-6 production compared to the untreated control cells, and anti-TLR4 antibody suppressed LPS-induced increased IL-6 levels. Linagliptin suppressed LPS-induced IL-6 production in a concentration-dependent manner in the presence of FBS. However, only 100 nM linagliptin could suppress LPS-induced IL-6 production in the absence of FBS., Conclusion: Concentration-dependent and -independent inflammatory suppression was observed following linagliptin treatment after LPS induction in an experimental model of TLR4 inhibition by anti-TLR4 antibodies. Our results showed that linagliptin may inhibit inflammation through multiple mechanisms centered around the TLR-4-mediated pathway., Competing Interests: The authors report no conflicts of interest in this work., (© 2021 Saito et al.)
- Published
- 2021
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194. Prediction and Chemical Interpretation of Singlet-Oxygen-Scavenging Activity of Small Molecule Compounds by Using Machine Learning.
- Author
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Fujimoto T and Gotoh H
- Abstract
A chemically explainable machine learning model was constructed with a small dataset to quantitatively predict the singlet-oxygen-scavenging ability. In this model, ensemble learning based on decision trees resulted in high accuracy. For explanatory variables, molecular descriptors by computational chemistry and Morgan fingerprints were used for achieving high accuracy and simple prediction. The singlet-oxygen-scavenging mechanism was explained by the feature importance obtained from machine learning outputs. The results are consistent with conventional chemical knowledge. The use of machine learning and reduction in the number of measurements for screening high-antioxidant-capacity compounds can considerably improve prediction accuracy and efficiency.
- Published
- 2021
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195. Publisher Correction: Evolutionary transition of doublesex regulation from sex-specific splicing to male-specific transcription in termites.
- Author
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Miyazaki S, Fujiwara K, Kai K, Masuoka Y, Gotoh H, Niimi T, Hayashi Y, Shigenobu S, and Maekawa K
- Published
- 2021
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196. Hypsochromic Shift of Multiple-Resonance-Induced Thermally Activated Delayed Fluorescence by Oxygen Atom Incorporation.
- Author
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Tanaka H, Oda S, Ricci G, Gotoh H, Tabata K, Kawasumi R, Beljonne D, Olivier Y, and Hatakeyama T
- Abstract
Herein, we reported an ultrapure blue multiple-resonance-induced thermally activated delayed fluorescence (MR-TADF) material (ν-DABNA-O-Me) with a high photoluminescence quantum yield and a large rate constant for reverse intersystem crossing. Because of restricted π-conjugation of the HOMO rather than the LUMO induced by oxygen atom incorporation, ν-DABNA-O-Me shows a hypsochromic shift compared to the parent MR-TADF material (ν-DABNA). An organic light-emitting diode based on this material exhibits an emission at 465 nm, with a small full-width at half-maximum of 23 nm and Commission Internationale de l'Eclairage coordinates of (0.13, 0.10), and a high maximum external quantum efficiency of 29.5 %. Moreover, ν-DABNA-O-Me facilitates a drastically improved efficiency roll-off and a device lifetime compared to ν-DABNA, which demonstrates significant potential of the oxygen atom incorporation strategy., (© 2021 Wiley-VCH GmbH.)
- Published
- 2021
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197. Evolutionary transition of doublesex regulation from sex-specific splicing to male-specific transcription in termites.
- Author
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Miyazaki S, Fujiwara K, Kai K, Masuoka Y, Gotoh H, Niimi T, Hayashi Y, Shigenobu S, and Maekawa K
- Subjects
- Animals, Binding Sites, Female, Isoptera metabolism, Male, Protein Isoforms, RNA-Seq, Sex Factors, Transcription Factors metabolism, Biological Evolution, Gene Expression Regulation, Insect Proteins genetics, Isoptera genetics, RNA Splicing, Transcription Factors genetics
- Abstract
The sex determination gene doublesex (dsx) encodes a transcription factor with two domains, oligomerization domain 1 (OD1) and OD2, and is present throughout insects. Sex-specific Dsx splicing isoforms regulate the transcription of target genes and trigger sex differentiation in all Holometabola examined to date. However, in some hemimetabolous insects, dsx is not spliced sexually and its sequence is less conserved. Here, to elucidate evolutionary changes in dsx in domain organisation and regulation in termites, we searched genome and/or transcriptome databases for the dsx OD1 and OD2 in seven termite species and their sister group (Cryptocercus woodroaches). Molecular phylogenetic and synteny analyses identified OD1 sequences of termites and C. punctulatus that clustered with dsx of Holometabola and regarded them as dsx orthologues. The Cryptocercus dsx orthologue containing OD2 was spliced sexually, as previously shown in other insects. However, OD2 was not found in all termite dsx orthologues. These orthologues were encoded by a single exon in three termites for which genome information is available; they were not alternatively spliced but transcribed in a male-specific manner in two examined species. Evolution of dsx regulation from sex-specific splicing to male-specific transcription may have occurred at an early stage of social evolution in termites., (© 2021. The Author(s).)
- Published
- 2021
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198. Epithelial folding determines the final shape of beetle horns.
- Author
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Gotoh H, Adachi H, Matsuda K, and Lavine LC
- Subjects
- Animals, Coleoptera anatomy & histology, Coleoptera growth & development, Epithelium anatomy & histology, Epithelium growth & development, Gene Expression Regulation, Developmental genetics, Horns growth & development, Species Specificity, Biological Evolution, Body Patterning genetics, Coleoptera genetics, Horns anatomy & histology
- Abstract
The elaborate ornaments and weapons of sexual selection, such as the vast array of horns observed in scarab beetles, are some of the most striking outcomes of evolution. How these novel traits have arisen, develop, and respond to condition is governed by a complex suite of interactions that require coordination between the environment, whole-animal signals, cell-cell signals, and within-cell signals. Endocrine factors, developmental patterning genes, and sex-specific gene expression have been shown to regulate beetle horn size, shape, and location, yet no overarching mechanism of horn shape has been described. Recent advances in microscopy and computational analyses combined with a functional genetic approach have revealed that patterning genes combined with intricate epithelial folding and movement are responsible for the final shape of a beetle head horn., (Copyright © 2021. Published by Elsevier Ltd.)
- Published
- 2021
- Full Text
- View/download PDF
199. Syntheses and Physical Properties of Cationic BN-Embedded Polycyclic Aromatic Hydrocarbons.
- Author
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Gotoh H, Nakatsuka S, Tanaka H, Yasuda N, Haketa Y, Maeda H, and Hatakeyama T
- Abstract
Cationic BN-embedded polycyclic aromatic hydrocarbons (BN-PAH
+ s) were synthesized from a nitrogen-containing macrocycle via pyridine-directed tandem C-H borylation. Incorporating BN into PAH+ resulted in a remarkable hypsochromic shift due to an increase in the LUMO energy and the symmetry changes of the HOMO and LUMO. Electrophilic substitution or anion exchange of BN-PAH+ possessing tetrabromoborate as a counter anion (BN+ [BBr4 - ]) afforded air-stable BN-PAH/PAH+ s. Of these, BN+ [TfO- ] allowed reversible two-electron reduction and the formation of two-dimensional brickwork-type π-electronic ion pair with 1,2,3,4,5-pentacyanocyclopentadienyl anion, demonstrating the potential application of BN-PAH+ as electronic materials., (© 2021 Wiley-VCH GmbH.)- Published
- 2021
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200. Survey of actual conditions of erythema marginatum as a prodromal symptom in Japanese patients with hereditary angioedema.
- Author
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Ohsawa I, Fukunaga A, Imamura S, Iwamoto K, Tanaka A, Hide M, Honda D, Yamashita K, Fujiwara C, Ishikawa O, Yamaguchi T, Maehara J, Hirose T, Ieko M, Umekita K, Nakamura Y, and Gotoh H
- Abstract
Background: Hereditary angioedema (HAE) is a rare but life-threatening condition. HAE types I and II (HAE-1/2) result from C1-inhibitor (C1-INH) deficiency. However, recent genetic analysis has established a new type of HAE with normal C1-INH (HAEnC1-INH). The mutations of factor XII, plasminogen, angiopoietin 1, and kininogen 1 genes may be the cause of HAEnC1-INH. Nevertheless, other causative molecules (HAE-unknown) may be involved. The Japanese therapeutic environment for HAE has been improving owing to the self-subcutaneous injection of icatibant, which was approved for the treatment of acute attack and enables early therapy. Erythema marginatum (EM) is a visible prodromal symptom which occasionally occurs prior to an angioedema attack; hence, recognizing the risk of an acute attack is important for early treatment. However, the detailed characteristics of EM remain unclear. In this study, we first investigated the clinical manifestations of EM in Japanese patients with HAE., Methods: A 20-point survey was developed and distributed to 40 physicians to gather clinical data on EM from patients with HAE., Results: Data on 68 patients with HAE (58 patients with HAE-1/2 and 10 patients with HAE-unknown) were collected. Of the patients with HAE-1/2, 53.4% experienced EM, whereas 43.1% did not. The forearm was the most frequent area of EM (64.5%), followed by the abdomen (29.0%) and upper arm and precordium (19.3%). Of the HAE-1/2 patients with EM, 41.9% always had angioedema following EM, while 29.0% always had colocalization of EM with angioedema. Moreover, 3.2% showed a correlation between the awareness of EM and severity of an angioedema attack. In 60.9% of HAE-1/2 patients with EM, the interval between the awareness of EM and appearance of angioedema was <3 h. Of the patients with HAE-unknown, 30.0% also experienced EM., Conclusion: We confirmed that more than one-half of Japanese patients with HAE-1/2 and one-third of those with HAE-unknown develop EM as the prodromal symptom of an angioedema attack. Physicians should communicate the significance of EM to patients with HAE to prepare them for possible imminent attacks., Competing Interests: The authors report no conflicts of interest., (© 2021 The Authors.)
- Published
- 2021
- Full Text
- View/download PDF
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