456 results on '"Godkin, Andrew"'
Search Results
152. Potent T cell agonism mediated by a very rapid TCR/pMHC interaction
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Boulter, Jonathan M., primary, Schmitz, Nicole, additional, Sewell, Andrew K., additional, Godkin, Andrew J., additional, Bachmann, Martin F., additional, and Gallimore, Awen M., additional
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- 2007
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153. Regulatory T cells inhibit Fas ligand-induced innate and adaptive tumour immunity
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Simon, Anna Katharina, primary, Jones, Emma, additional, Richards, Hannah, additional, Wright, Kate, additional, Betts, Gareth, additional, Godkin, Andrew, additional, Screaton, Gavin, additional, and Gallimore, Awen, additional
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- 2007
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154. A distinct chemokine axis does not account for enrichment of Foxp3+ CD4+ T cells in carcinogen-induced fibrosarcomas.
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Ondondo, Beatrice, Colbeck, Emily, Jones, Emma, Smart, Kathryn, Lauder, Sarah N., Hindley, James, Godkin, Andrew, Moser, Bernhard, Ager, Ann, and Gallimore, Awen
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CHEMOKINES ,FORKHEAD transcription factors ,CD4 antigen ,T cells ,CARCINOGENS ,FIBROSARCOMA ,TUMOR immunology - Abstract
The frequency of CD4
+ Foxp3+ regulatory T (Treg) cells is often significantly increased in the blood of tumour-bearing mice and people with cancer. Moreover, Treg cell frequencies are often higher in tumours compared with blood and lymphoid organs. We wished to determine whether certain chemokines expressed within the tumour mass selectively recruit Treg cells, thereby contributing to their enrichment within the tumour-infiltrating lymphocyte pool. To achieve this goal, the chemokine profile of carcinogen-induced fibrosarcomas was determined, and the chemokine receptor expression profiles of both CD4+ Foxp3− and CD4+ Foxp3+ T cells were compared. These analyses revealed that the tumours are characterized by expression of inflammatory chemokines ( CCL2, CCL5, CCL7, CCL8, CCL12, CXCL9, CXCL10 and CX3 CL1), reflected by an enrichment of activated Foxp3− and Foxp3+ T cells expressing T helper type 1-associated chemokine receptors. Notably, we found that CXCR3+ T cells were significantly enriched in the tumours although curiously we found no evidence that CXCR3 was required for their recruitment. Instead, CXCR3 marks a population of activated Foxp3− and Foxp3+ T cells, which use multiple and overlapping ligand receptor pairs to guide their migration to tumours. Collectively, these data indicate that enrichment of Foxp3+ cells in tumours characterized by expression of inflammatory chemokines, does not occur via a distinct chemokine axis, thus selective chemokine blockade is unlikely to represent a meaningful therapeutic strategy for preventing Treg cell accumulation in tumours. [ABSTRACT FROM AUTHOR]- Published
- 2015
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155. Structural basis for ineffective T-cell responses to MHC anchor residue-improved 'heteroclitic' peptides.
- Author
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Madura, Florian, Rizkallah, Pierre J., Holland, Christopher J., Fuller, Anna, Bulek, Anna, Godkin, Andrew J., Schauenburg, Andrea J., Cole, David K., and Sewell, Andrew K.
- Abstract
MHC anchor residue-modified 'heteroclitic' peptides have been used in many cancer vaccine trials and often induce greater immune responses than the wild-type peptide. The best-studied system to date is the decamer MART-1/Melan-A
26-35 peptide, EAAGIGILTV, where the natural alanine at position 2 has been modified to leucine to improve human leukocyte antigen (HLA)-A*0201 anchoring. The resulting E LAGIGILTV peptide has been used in many studies. We recently showed that T cells primed with the E LAGIGILTV peptide can fail to recognize the natural tumor-expressed peptide efficiently, thereby providing a potential molecular reason for why clinical trials of this peptide have been unsuccessful. Here, we solved the structure of a TCR in complex with HLA-A*0201-EAAGIGILTV peptide and compared it with its heteroclitic counterpart , HLA-A*0201-E LAGIGILTV. The data demonstrate that a suboptimal anchor residue at position 2 enables the TCR to 'pull' the peptide away from the MHC binding groove, facilitating extra contacts with both the peptide and MHC surface. These data explain how a TCR can distinguish between two epitopes that differ by only a single MHC anchor residue and demonstrate how weak MHC anchoring can enable an induced-fit interaction with the TCR. Our findings constitute a novel demonstration of the extreme sensitivity of the TCR to minor alterations in peptide conformation. [ABSTRACT FROM AUTHOR]- Published
- 2015
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156. CD4+CD25+FOXP3+ Regulatory T Cells Suppress Anti-Tumor Immune Responses in Patients with Colorectal Cancer
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Clarke, Sarah L., primary, Betts, Gareth J., additional, Plant, Andrea, additional, Wright, Kate L., additional, El-Shanawany, Tariq M., additional, Harrop, Richard, additional, Torkington, Jared, additional, Rees, Brian I., additional, Williams, Geraint T., additional, Gallimore, Awen M., additional, and Godkin, Andrew J., additional
- Published
- 2006
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157. Molecular analysis of HLA class II associations with hepatitis B virus clearance and vaccine nonresponsiveness
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Godkin, Andrew, primary, Davenport, Miles, additional, and Hill, Adrian V.S., additional
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- 2005
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158. Evolution of Epitope-Specific Memory CD4+ T Cells After Clearance of Hepatitis C Virus
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Godkin, Andrew J., primary, Thomas, Howard C., additional, and Openshaw, Peter J., additional
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- 2002
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159. Naturally Processed HLA Class II Peptides Reveal Highly Conserved Immunogenic Flanking Region Sequence Preferences That Reflect Antigen Processing Rather Than Peptide-MHC Interactions
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Godkin, Andrew J., primary, Smith, Kathrine J., additional, Willis, Anthony, additional, Tejada-Simon, Maria V., additional, Zhang, Jingwu, additional, Elliott, Tim, additional, and Hill, Adrian V. S., additional
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- 2001
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160. Characterization of novel HLA-DR11-restricted HCV epitopes reveals both qualitative and quantitative differences in HCV-specific CD4+ T cell responses in chronically infected and non-viremic patients
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Godkin, Andrew, primary, Jeanguet, Nathalie, additional, Thursz, Mark, additional, Openshaw, Peter, additional, and Thomas, Howard, additional
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- 2001
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161. The paradox of NKp46+ natural killer cells: drivers of severe hepatitis C virus-induced pathology but in-vivo resistance to interferon α treatment.
- Author
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Pembroke, Tom, Christian, Adam, Jones, Emma, Hills, Robert K., Wang, Eddie C. Y., Gallimore, Awen M., and Godkin, Andrew
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KILLER cells ,VIRAL disease prevention ,VIRUS diseases ,IMMUNOLOGY ,INTERFERONS ,HEPATITIS C virus - Abstract
Objective There is evidence that natural killer (NK) cells help control persistent viral infections including hepatitis C virus (HCV). The phenotype and function of blood and intrahepatic NK cells, in steady state and after interferon (IFN) α treatment has not been fully elucidated. Design We performed a comparison of NK cells derived from blood and intrahepatic compartments in multiple paired samples from patients with a variety of chronic liver diseases. Furthermore, we obtained serial paired samples from an average of five time points in HCV patients treated with IFNα. Results Liver NK cells demonstrate a distinct activated phenotype compared to blood manifested as downregulation of the NK cell activation receptors CD16, NKG2D, and NKp30; with increased spontaneous degranulation and IFN production. In contrast, NKp46 expression was not downregulated. Indeed, NKp46-rich NK populations were the most activated, correlating closely with the severity of liver inflammation. Following initiation of IFNα treatment there was a significant increase in the proportion of intrahepatic NK cells at days 1 and 3. NKp46-rich NK populations demonstrated no reserve activation capacity with IFNa treatment and were associated with poor viral control on treatment and treatment failure. Conclusions NKp46 marks out pathologically activated NK cells, which may result from a loss of homeostatic control of activating receptor expression in HCV. Paradoxically these pathological NK cells do not appear to be involved in viral control in IFNa-treated individuals and, indeed, predict slower rates of viral clearance. [ABSTRACT FROM AUTHOR]
- Published
- 2014
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162. Use of Complete Eluted Peptide Sequence Data from HLA-DR and -DQ Molecules to Predict T Cell Epitopes, and the Influence of the Nonbinding Terminal Regions of Ligands in Epitope Selection
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Godkin, Andrew J., primary, Davenport, Miles P., additional, Willis, Anthony, additional, Jewell, Derek P., additional, and Hill, Adrian V. S., additional
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- 1998
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163. Re-directing CD4+ T cell responses with the flanking residues of MHC class II-bound peptides: the core is not enough.
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Holland, Christopher J., Cole, David K., and Godkin, Andrew
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PEPTIDES ,HISTOCOMPATIBILITY ,T-cell receptor genes ,CRYSTAL structure ,CELL membranes ,CYTOSOL ,EPITOPES - Abstract
Recombinant αβT cell receptors, expressed onT cell membranes, recognize short peptides presented at the cell surface in complex with MHC molecules.There are two main subsets of αβ T cells: CD8+ T cells that recognize mainly cytosol-derived peptides in the context of MHC class I (pMHC-I), and CD4+ T cells that recognize peptides usually derived from exogenous proteins presented by MHC class II (pMHC-II). Unlike the more uniform peptide lengths (usually 8-13mers) bound in the MHC-I closed groove, MHC-II presented peptides are of a highly variable length.The bound peptides consist of a core bound 9mer (reflecting the binding motif for the particular MHC-II type) but with variable peptide flanking residues (PFRs) that can extend from both the N- and C-terminus of the MHC-II binding groove. Although pMHC-I and pMHC-II play a virtually identical role during T cell responses (T cell antigen presentation) and are very similar in overall conformation, there exist a number of subtle but important differences that may govern the functional dichotomy observed between CD8+ and CD4+T cells. Here, we provide an overview of the impact of structural differences between pMHC-I and pMHC-II and the molecular interactions with the T cell receptor including the functional importance of MHC-II PFRs. We consider how factors such as anatomical location, inflammatory milieu, and particular types of antigen presenting cell might, in theory, contribute to the quantitative (i.e., pMHC ligand frequency) as well as qualitative (i.e., variable PFR) nature of peptide epitopes, and hence offer a means of control and influence of a CD4+ T cell response. Lastly, we review our recent findings showing how modifications to MHC-II PFRs can modify CD4+ T cell antigen recognition. These findings may have novel applications for the development of CD4+ T cell peptide vaccines and diagnostics. [ABSTRACT FROM AUTHOR]
- Published
- 2013
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164. Avidity of influenza-specific memory CD8+ T-cell populations decays over time compromising antiviral immunity.
- Author
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Humphreys, Ian R., Clement, Mathew, Marsden, Morgan, Ladell, Kristin, McLaren, James E., Smart, Kathryn, Hindley, James P., Bridgeman, Hayley M., van den Berg, Hugo A., Price, David A., Ager, Ann, Wooldridge, Linda, Godkin, Andrew, and Gallimore, Awen M.
- Abstract
Decline of cell-mediated immunity is often attributed to decaying T-cell numbers and their distribution in peripheral organs. This study examined the hypothesis that qualitative as well as quantitative changes contribute to the declining efficacy of CD8
+ T-cell memory. Using a model of influenza virus infection, where loss of protective CD8+ T-cell immunity was observed 6 months postinfection, we found no decline in antigen-specific T-cell numbers or migration to the site of secondary infection. There was, however, a large reduction in antigen-specific CD8+ T-cell degranulation, cytokine secretion, and polyfunctionality. A profound loss of high-avidity T cells over time indicated that failure to confer protective immunity resulted from the inferior functional capacity of remaining low avidity cells. These data imply that high-avidity central memory T cells wane with declining antigen levels, leaving lower avidity T cells with reduced functional capabilities. [ABSTRACT FROM AUTHOR]- Published
- 2012
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165. Rapid early innate control of hepatitis C virus during IFN-α treatment compromises adaptive CD4+ T-cell immunity.
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Pembroke, Tom, Rees, Ian, Gallagher, Kathleen, Jones, Emma, Mizen, Paul, Navruzov, Timur, Freedman, Andrew, Fielding, Ceri, Humphreys, Ian R., Wang, Eddie C. Y., Gallimore, Awen M., and Godkin, Andrew
- Abstract
The ability to control HCV with IFN-α-based treatments provides an opportunity in humans to study how the rate of viral clearance in vivo impinges on the development of antiviral responses. Ex vivo ( IFN-γ-producing) and cultured antiviral CD4
+ T cells, serum cytokines, and viral loads were measured repeatedly in a cohort of chronically HCV-infected subjects ( n = 33) receiving IFN-α. Rapid control of virus indicated by an increased calculated rate of virus clearance, occurred in those subjects demonstrating absent/minimal T-cell responses ( p < 0.0006). Surprisingly, in subjects who demonstrated the most robust T-cell responses (and reduced serum IL-10), there was actually a reduced rate of early virus clearance. A subsequent analysis of NK-cell function in available subjects ( n = 8) revealed an inverse correlation between pretreatment NK-cell expression of NKp46 and the potential to upregulate cytotoxic function on exposure to IFN-α ( p < 0.004), as well as the subsequent measured rate of viral clearance ( p = 0.045). Thus, the CD4+ T-cell response during IFN-α treatment appears to be shaped by the rate of innate virus suppression. These data suggest that individuals who respond most effectively to immune intervention may be most in need of subsequent vaccination to prevent reinfection. [ABSTRACT FROM AUTHOR]- Published
- 2012
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166. Expansion of hepatitis C–specific CD4+CD25+ regulatory T cells after viral clearance: A mechanism to limit collateral damage?
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Godkin, Andrew, Ng, Wan Fai, Gallagher, Kathleen, Betts, Gareth, Thomas, Howard C., and Lechler, Robert I.
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HEPATITIS ,INFLAMMATION ,LIVER diseases - Abstract
Background: Data from rodent models suggest that a subpopulation of CD4
+ T cells, characterized by the constitutive expression of CD25, play a key role in regulating many immune responses. Human CD4+ CD25+ T cells also appear to possess a regulatory function, but their role in infections is not fully defined. Objectives: We sought to explore the possibility of a role for CD4+ CD25+ T cells in controlling immunity to hepatitis C virus (HCV). We hypothesized that CD4+ CD25+ T cells might account for the paucity of immune responses measurable in chronically viremic patients by suppressing the immune responses to HCV antigens. Methods: We compared the responses of PBMCs to 3 different recombinant HCV antigens before and after depletion of CD25+ cells in 15 chronically viremic patients, 14 nonviremic HCV antibody–positive subjects, and 14 healthy control subjects. We also tested the ability of CD4+ CD25+ T cells purified from HLA-matched viremic or nonviremic blood to suppress the responses of HCV epitope–specific T-cell clones. Results: To our surprise, depletion of peripheral blood CD25+ cells led to a pronounced increase in proliferation of and IFN-γ production by PBMCs only in nonviremic patients. Furthermore, the CD4+ CD25+ T cells purified from HLA-matched nonviremic blood (in contrast to CD4+ CD25+ T cells isolated from chronically viremic blood) inhibited the responses of HCV epitope–specific T-cell clones. Conclusion: HCV-specific CD4+ CD25+ regulatory T cells appear to accompany successful viral clearance. [Copyright &y& Elsevier]- Published
- 2008
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167. Interleukin-6 Is Crucial for Recall of Influenza-Specific Memory CD4+ T Cells.
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Longhi, Maria Paula, Wright, Kate, Lauder, Sarah N., Nowell, Mari A., Jones, Gareth W., Godkin, Andrew J., Jones, Simon A., and Gallimore, Awen M.
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INTERLEUKIN-6 ,CELL proliferation ,INFLUENZA viruses ,RESPIRATORY infections ,CELL division - Abstract
Currently, our understanding of mechanisms underlying cell-mediated immunity and particularly of mechanisms that promote robust T cell memory to respiratory viruses is incomplete. Interleukin (IL)-6 has recently re-emerged as an important regulator of T cell proliferation and survival. Since IL-6 is abundant following infection with influenza virus, we analyzed virus-specific T cell activity in both wild type and IL-6 deficient mice. Studies outlined herein highlight a novel role for IL-6 in the development of T cell memory to influenza virus. Specifically, we find that CD4+ but not CD8
+ T cell memory is critically dependent upon IL-6. This effect of IL-6 includes its ability to suppress CD4+ CD25+ regulatory T cells (Treg). We demonstrate that influenza-induced IL-6 limits the activity of virus-specific Tregs, thereby facilitating the activity of virusspecific memory CD4+ T cells. These experiments reveal a critical role for IL-6 in ensuring, within the timeframe of an acute infection with a cytopathic virus, that antigen-specific Tregs have no opportunity to down-modulate the immune response, thereby favoring pathogen clearance and survival of the host. [ABSTRACT FROM AUTHOR]- Published
- 2008
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168. Response to COVID-19 booster vaccinations in seronegative people with multiple sclerosis
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Tallantyre, Emma C, Scurr, Martin J, Vickaryous, Nicola, Richards, Aidan, Anderson, Valerie, Baker, David, Chance, Randy, Evangelou, Nikos, George, Katila, Giovannoni, Gavin, Harding, Katharine E, Hibbert, Aimee, Ingram, Gillian, Jolles, Stephen, Jones, Meleri, Kang, Angray S, Loveless, Samantha, Moat, Stuart J, Robertson, Neil P, Rios, Francesca, Schmierer, Klaus, Willis, Mark, Godkin, Andrew, and Dobson, Ruth
- Abstract
•PwMS on certain DMTs have attenuated response to initial COVID-19 vaccination.•Booster vaccinations result in seroconversion in one third.•Almost half of pwMS on fingolimod seroconverted after a booster vaccine.•COVID-19 T-cell responses are often present in people on ocrelizumab.
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- 2022
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169. A distinctive peptide binding motif for HLA-DRB1 * 0407, an HLA-DR4 subtype not associated with rheumatoid arthritis.
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Davenport, M. P., Godkin, Andrew, Friede, Thomas, Stevanović, Stefan, Willis, Anthony C., Hill, Adrian V. S., and Rammensee, Hans-Georg
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- 1997
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170. T-cell response following COVID booster vaccination in seronegative people with multiple sclerosis
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Tallantyre, Emma, Vickaryous, Nicola, Richards, Aidan, Rios, Francesca, George, Katila, Scurr, Martin, Godkin, Andrew, Loveless, Samantha, and Dobson, Ruth
- Abstract
BackgroundAttenuated vaccine response is a concern in people receiving immunosuppression. It is unclear whether booster vaccinations improve immunity in this context.MethodsT-cell and antibody responses to Sars-COV-2 RBD (spike protein) were measured following third COVID-19 vaccine (v3) in people with MS who were IgG seronegative after vaccines 1&2.Results41 people with MS (30:11 female:male; mean age 45.6 years) were included; 28 receiving ocreli- zumab and 6 fingolimod, the remainder were on other immunosuppressants. Samples were taken 4-8 weeks following v3. Anti-RBD seroconversion after v3 occurred in 10/28 (36%) on ocrelizumab and 5/6 (83%) on fingolimod. T-cell responses were detected in 24/28 (86%) treated with ocrelizumab and 0/6 (0%) treated with fingolimod. All those with T-cell responses had seroconverted. There was an association between evidence of previous infection and seroconversion (p=0.0025), but not T-cell response to vaccination following v3 (Fisher’s exact p=0.2). Four patients (all on ocrelizumab) had experienced confirmed COVID since March 2020; 2 were admitted to hospital.ConclusionsSeroconversion occurs in a proportion of seronegative people following COVID-19 vaccine dose 3. T-cell response is frequently seen despite the lack of humoral immunity. The clinical correlates of antibody and T cell responses to COVID-19 remain to be established.
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- 2022
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171. TCR‐induced alteration of primary MHC peptide anchor residue
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Madura, Florian, Rizkallah, Pierre J., Legut, Mateusz, Holland, Christopher J., Fuller, Anna, Bulek, Anna, Schauenburg, Andrea J., Trimby, Andrew, Hopkins, Jade R., Wells, Stephen A., Godkin, Andrew, Miles, John J., Sami, Malkit, Li, Yi, Liddy, Nathaniel, Jakobsen, Bent K., Loveridge, E. Joel, Cole, David K., and Sewell, Andrew K.
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172. Tracking the kinetics of intrahepatic immune responses by repeated fine needle aspiration of the liver
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Pembroke, Tom, Gallimore, Awen, and Godkin, Andrew
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Intrahepatic lymphocytes ,Immunology ,Immunology and Allergy ,Natural killer cells ,Fine needle aspiration - Abstract
Liver disease is an increasing global health burden. The final sequalae of cirrhosis, liver failure and hepatocellular carcinoma are often the result of inflammation driven by intrahepatic lymphocytes. Accurate assessment of organ-specific diseases ideally employs tissue sampling though this is rarely performed. Here we report our experiences of utilising repeated fine needle aspirations (FNAs) to assess liver-derived leukocytes. In 88 patient samples, we obtained a mean of 36,959 lymphocytes from each FNA-derived biopsy (SD 22,319 cells, range 5034–91,242 cells) measured by flow cytometry. This quick technique required minimal analgesia compared to liver biopsy (p=0.03); was well tolerated and safe, and hence repeated sampling up to 3 times within a week was feasible. We detail the technique to rapidly derive a single cell suspension suitable for multiparameter flow cytometry analysis. Finally we illustrate the importance of organ-derived sampling by showing that natural killer (NK) cells from FNA samples have a markedly altered phenotype compared to those assessed in peripheral blood. In combination these data validate FNA as a powerful and well-tolerated method of sampling intrahepatic lymphocytes to study the immunology of acute and chronic liver diseases.
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173. High endothelial venules: Help or hindrance in the quest for antitumor immunity?
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Gallimore, Awen, Godkin, Andrew, and Ager, Ann
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ENDOTHELIAL cells , *ANTINEOPLASTIC agents , *IMMUNE response , *BLOOD vessels , *NEOPLASTIC cell transformation - Abstract
Recently, a number of studies have documented the presence of high endothelial venules in both mouse and human tumors. The significance of these highly specialized blood vessels within neoplastic lesions, and notably their capacity to influence anticancer immune responses and tumor progression, remains to be fully understood. [ABSTRACT FROM AUTHOR]
- Published
- 2013
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174. CD4+T Cells Recognize Conserved Influenza A Epitopes through Shared Patterns of V-Gene Usage and Complementary Biochemical Features
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Greenshields-Watson, Alexander, Attaf, Meriem, MacLachlan, Bruce J., Whalley, Thomas, Rius, Cristina, Wall, Aaron, Lloyd, Angharad, Hughes, Hywel, Strange, Kathryn E., Mason, Georgina H., Schauenburg, Andrea J., Hulin-Curtis, Sarah L., Geary, James, Chen, Yuan, Lauder, Sarah N., Smart, Kathryn, Vijaykrishna, Dhanasekaran, Grau, Miguel L., Shugay, Mikhail, Andrews, Robert, Dolton, Garry, Rizkallah, Pierre J., Gallimore, Awen M., Sewell, Andrew K., Godkin, Andrew J., and Cole, David K.
- Abstract
T cell recognition of peptides presented by human leukocyte antigens (HLAs) is mediated by the highly variable T cell receptor (TCR). Despite this built-in TCR variability, individuals can mount immune responses against viral epitopes by using identical or highly related TCRs expressed on CD8+T cells. Characterization of these TCRs has extended our understanding of the molecular mechanisms that govern the recognition of peptide-HLA. However, few examples exist for CD4+T cells. Here, we investigate CD4+T cell responses to the internal proteins of the influenza A virus that correlate with protective immunity. We identify five internal epitopes that are commonly recognized by CD4+T cells in five HLA-DR1+subjects and show conservation across viral strains and zoonotic reservoirs. TCR repertoire analysis demonstrates several shared gene usage biases underpinned by complementary biochemical features evident in a structural comparison. These epitopes are attractive targets for vaccination and other T cell therapies.
- Published
- 2020
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175. The Ussing chamber system for measuring intestinal permeability in health and disease.
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Thomson, Amanda, Smart, Kathryn, Somerville, Michelle S., Lauder, Sarah N., Appanna, Gautham, Horwood, James, Sunder Raj, Lawrence, Srivastava, Brijesh, Durai, Dharmaraj, Scurr, Martin J., Keita, Åsa V., Gallimore, Awen M., and Godkin, Andrew
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CROHN'S disease ,PERMEABILITY ,ULCERATIVE colitis ,INTESTINAL diseases ,SODIUM sulfate ,ANIMALS ,COLITIS ,COLON (Anatomy) ,DEXTRAN ,ELECTRODIAGNOSIS ,INTESTINAL mucosa ,LIGHT ,MICE - Abstract
Background: The relationship between intestinal epithelial integrity and the development of intestinal disease is of increasing interest. A reduction in mucosal integrity has been associated with ulcerative colitis, Crohn's disease and potentially could have links with colorectal cancer development. The Ussing chamber system can be utilised as a valuable tool for measuring gut integrity. Here we describe step-by-step methodology required to measure intestinal permeability of both mouse and human colonic tissue samples ex vivo, using the latest equipment and software. This system can be modified to accommodate other tissues.Methods: An Ussing chamber was constructed and adapted to support both mouse and human tissue to measure intestinal permeability, using paracellular flux and electrical measurements. Two mouse models of intestinal inflammation (dextran sodium sulphate treatment and T regulatory cell depletion using C57BL/6-FoxP3DTR mice) were used to validate the system along with human colonic biopsy samples.Results: Distinct regional differences in permeability were consistently identified within mouse and healthy human colon. In particular, mice showed increased permeability in the mid colonic region. In humans the left colon is more permeable than the right. Furthermore, inflammatory conditions induced chemically or due to autoimmunity reduced intestinal integrity, validating the use of the system.Conclusions: The Ussing chamber has been used for many years to measure barrier function. However, a clear and informative methods paper describing the setup of modern equipment and step-by-step procedure to measure mouse and human intestinal permeability isn't available. The Ussing chamber system methodology we describe provides such detail to guide investigation of gut integrity. [ABSTRACT FROM AUTHOR]- Published
- 2019
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176. Whole blood-based measurement of SARS-CoV-2-specific T cell responses reveals asymptomatic infection and vaccine efficacy in healthy subjects and patients with solid organ cancers
- Author
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Scurr, Martin J., Zelek, Wioleta M., Lippiatt, George, Somerville, Michelle, Burnell, Stephanie E. A., Capitani, Lorenzo, Davies, Kate, Lawton, Helen, Tozer, Thomas, Rees, Tara, Roberts, Kerry, Evans, Mererid, Jackson, Amanda, Young, Charlotte, Fairclough, Lucy, Wills, Mark, Westwell, Andrew D., Morgan, B. Paul, Gallimore, Awen, and Godkin, Andrew
- Abstract
Accurate assessment of SARS-CoV-2 immunity in the population is critical to evaluating vaccine efficacy and devising public health policies. Whilst the exact nature of effective immunity remains incompletely defined, SARS-CoV-2-specific T cell responses are a critical feature of the immune response that will likely form a key correlate of protection against COVID-19. Here, we developed and optimised a high-throughput whole blood-based assay to determine the T cell response associated with prior SARS-CoV-2 infection and/or vaccination amongst 156 healthy donors and 67 cancer patients. Following overnight in vitro stimulation with SARS-CoV-2-specific peptides, blood plasma samples were harvested and analysed for TH1-type effector cytokines (IFN-γ and IL-2). Amongst healthy donors, highly significant differential IFN-γ+/IL-2+ SARS-CoV-2-specific T cell responses were seen amongst vaccinated or previously infected COVID-19-positive individuals in comparison to unknown/naïve individuals (P < 0.0001). IL-2 production from T cells in response to SARS-CoV-2 derived antigens was a highly predictive diagnostic assay (P < 0.0001; 96.0% sensitivity, 93.9% specificity); measurement of IFN-γ+ SARS-CoV-2 specific T cell responses was equally effective at identifying asymptomatic (antibody and T cell positive) participants. A single dose of COVID-19 vaccine induced IFN-γ and/or IL-2 SARS-CoV-2-specific T cell responses in 28/29 (96.6%) of healthy donors, reducing significantly to 27/56 (48.2%) when measured in cancer patients (P = 0.0003). Overall, this cost-effective standardisable test ensures accurate and comparable assessments of SARS-CoV-2-specific T cell responses amenable to widespread population immunity testing.
177. Additional file 2: of The Ussing chamber system for measuring intestinal permeability in health and disease
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Thomson, Amanda, Smart, Kathryn, Somerville, Michelle, Lauder, Sarah, Gautham Appanna, Horwood, James, Raj, Lawrence Sunder, Brijesh Srivastava, Dharmaraj Durai, Scurr, Martin, Ă Sa Keita, Awen Gallimore, and Godkin, Andrew
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3. Good health - Abstract
ARRIVE Guidelines Checklist. (DOCX 658 kb)
178. Additional file 3: of The Ussing chamber system for measuring intestinal permeability in health and disease
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Thomson, Amanda, Smart, Kathryn, Somerville, Michelle, Lauder, Sarah, Gautham Appanna, Horwood, James, Raj, Lawrence Sunder, Brijesh Srivastava, Dharmaraj Durai, Scurr, Martin, Ă Sa Keita, Awen Gallimore, and Godkin, Andrew
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food and beverages ,human activities ,3. Good health - Abstract
Figure S1. TER of colonic regions from male and female untreated FoxP3DTR mice. (A) TER of male and female (A) distal, (B) mid and (C) proximal colonic regions. Mann-Whitney tests used for statistical analyses. Error bars show +/â SEM. (DOCX 82 kb)
179. Additional file 4: of The Ussing chamber system for measuring intestinal permeability in health and disease
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Thomson, Amanda, Smart, Kathryn, Somerville, Michelle, Lauder, Sarah, Gautham Appanna, Horwood, James, Raj, Lawrence Sunder, Brijesh Srivastava, Dharmaraj Durai, Scurr, Martin, Ă Sa Keita, Awen Gallimore, and Godkin, Andrew
- Subjects
3. Good health - Abstract
Figure S2. Correlation between TER and lucifer yellow flux. (A) Correlation between TER and lucifer yellow in the right side of the colon and (B) the left side of the colon. Spearmanâ s correlation used for statistical analysis. (DOCX 77 kb)
180. Additional file 4: of The Ussing chamber system for measuring intestinal permeability in health and disease
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Thomson, Amanda, Smart, Kathryn, Somerville, Michelle, Lauder, Sarah, Gautham Appanna, Horwood, James, Raj, Lawrence Sunder, Brijesh Srivastava, Dharmaraj Durai, Scurr, Martin, Ă Sa Keita, Awen Gallimore, and Godkin, Andrew
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3. Good health - Abstract
Figure S2. Correlation between TER and lucifer yellow flux. (A) Correlation between TER and lucifer yellow in the right side of the colon and (B) the left side of the colon. Spearmanâ s correlation used for statistical analysis. (DOCX 77 kb)
181. Additional file 2: of The Ussing chamber system for measuring intestinal permeability in health and disease
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Thomson, Amanda, Smart, Kathryn, Somerville, Michelle, Lauder, Sarah, Gautham Appanna, Horwood, James, Raj, Lawrence Sunder, Brijesh Srivastava, Dharmaraj Durai, Scurr, Martin, Ă Sa Keita, Awen Gallimore, and Godkin, Andrew
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3. Good health - Abstract
ARRIVE Guidelines Checklist. (DOCX 658 kb)
182. Additional file 1: of The Ussing chamber system for measuring intestinal permeability in health and disease
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Thomson, Amanda, Smart, Kathryn, Somerville, Michelle, Lauder, Sarah, Gautham Appanna, Horwood, James, Raj, Lawrence Sunder, Brijesh Srivastava, Dharmaraj Durai, Scurr, Martin, Ă Sa Keita, Awen Gallimore, and Godkin, Andrew
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3. Good health - Abstract
Table S1. Patient Characteristics. (DOCX 16 kb)
183. Additional file 3: of The Ussing chamber system for measuring intestinal permeability in health and disease
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Thomson, Amanda, Smart, Kathryn, Somerville, Michelle, Lauder, Sarah, Gautham Appanna, Horwood, James, Raj, Lawrence Sunder, Brijesh Srivastava, Dharmaraj Durai, Scurr, Martin, Ă Sa Keita, Awen Gallimore, and Godkin, Andrew
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food and beverages ,human activities ,3. Good health - Abstract
Figure S1. TER of colonic regions from male and female untreated FoxP3DTR mice. (A) TER of male and female (A) distal, (B) mid and (C) proximal colonic regions. Mann-Whitney tests used for statistical analyses. Error bars show +/â SEM. (DOCX 82 kb)
184. Additional file 1: of The Ussing chamber system for measuring intestinal permeability in health and disease
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Thomson, Amanda, Smart, Kathryn, Somerville, Michelle, Lauder, Sarah, Gautham Appanna, Horwood, James, Raj, Lawrence Sunder, Brijesh Srivastava, Dharmaraj Durai, Scurr, Martin, Ă Sa Keita, Awen Gallimore, and Godkin, Andrew
- Subjects
3. Good health - Abstract
Table S1. Patient Characteristics. (DOCX 16 kb)
185. 956 Molecular interactions of hepatitis B virus nucleocapsid and envelope peptides with HLA-DR1, -DR3, -DR7 and -DR13 glycoproteins
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Godkin, Andrew J., Davenport, Miles, Thursz, Mark, and Hill, Adrian V.S.
- Published
- 2003
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186. Effect of Modified Vaccinia Ankara–5T4 and Low-Dose Cyclophosphamide on Antitumor Immunity in Metastatic Colorectal Cancer: A Randomized Clinical Trial
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Scurr, Martin, Pembroke, Tom, Bloom, Anja, Roberts, David, Thomson, Amanda, Smart, Kathryn, Bridgeman, Hayley, Adams, Richard, Brewster, Alison, Jones, Robert, Gwynne, Sarah, Blount, Daniel, Harrop, Richard, Wright, Melissa, Hills, Robert, Gallimore, Awen, and Godkin, Andrew
- Abstract
IMPORTANCE: The success of immunotherapy with checkpoint inhibitors is not replicated in most cases of colorectal cancer; therefore, different strategies are urgently required. The oncofetal antigen 5T4 is expressed in more than 90% of cases of metastatic colorectal cancer (mCRC). Preliminary data using modified vaccinia Ankara–5T4 (MVA-5T4) in mCRC demonstrated that it safely induced serologic and T-cell responses. OBJECTIVE: To determine whether antitumor immunity in mCRC could be increased using MVA-5T4, metronomic low-dose cyclophosphamide, or a combination of both treatments. DESIGN, SETTING, AND PARTICIPANTS: In this randomized clinical trial, 55 patients with inoperable mCRC and prior stable disease after standard chemotherapy were enrolled at a single center and randomized to watch and wait (n = 9), cyclophosphamide treatment only (n = 9), MVA-5T4 only (n = 19), and a combination of MVA-5T4 and cyclophosphamide (n = 18). Patients were enrolled and treated from July 9, 2012, through February 8, 2016, and follow-up was completed on December 13, 2016. Data were analyzed based on intention to treat. INTERVENTIONS: Patients randomized to a cyclophosphamide group received 50 mg twice daily on treatment days 1 to 7 and 15 to 21. Patients randomized to a MVA-5T4 group received an intramuscular injection at a dose of 1 × 109 50% tissue culture infectious dose on treatment days 22, 36, 50, 64, 78, and 106. MAIN OUTCOMES AND MEASURES: The predefined primary end point was the magnitude of anti-5T4 immune responses (5T4-specific T-cell and antibody levels) generated at treatment week 7. Secondary end points included analysis of the kinetics of anti-5T4 responses, progression-free survival (PFS), and overall survival (OS). RESULTS: Fifty-two patients (38 men and 14 women; mean [SD] age, 64.2 [10.1] years) were included in the study analysis. The 5T4-specific antibody immune responses were significantly increased in the MVA-5T4 (83.41 [36.09] relative units [RU]; P = .02) and combination treatment (65.81 [16.68] RU; P = .002) groups compared with no treatment (20.09 [7.20] RU). Cyclophosphamide depleted regulatory T cells in 24 of 27 patients receiving MVA-5T4, independently prolonging PFS (5.0 vs 2.5 months; hazard ratio [HR], 0.48; 95% CI, 0.21-1.11; P = .09). MVA-5T4 doubled baseline anti-5T4 responses in 16 of 35 patients, resulting in significantly prolonged PFS (5.6 vs 2.4 months; HR, 0.21; 95% CI, 0.09-0.47; P < .001) and OS (20.0 vs 10.3 months; HR, 0.32; 95% CI, 0.14-0.74; P = .008). No grade 3 or 4 adverse events were observed. CONCLUSIONS AND RELEVANCE: This initial randomized clinical immunotherapy study demonstrates a significant survival benefit in mCRC. Prior depletion of regulatory T cells by cyclophosphamide did not increase immune responses generated by MVA-5T4 vaccination; however, cyclophosphamide and MVA-5T4 each independently induced beneficial antitumor immune responses, resulting in prolonged survival without toxic effects. Larger clinical trials are planned to further validate these data. TRIAL REGISTRATION: isrctn.org Identifier: ISRCTN54669986
- Published
- 2017
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187. Assessing the prognostic value of preoperative carcinoembryonic antigen-specific T-cell responses in colorectal cancer.
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Scurr, Martin J, Brown, Clare M, Costa Bento, Diana F, Betts, Gareth J, Rees, Brian I, Hills, Robert K, Gallimore, Awen, and Godkin, Andrew
- Abstract
Current dogma suggests that tumor-reactive IFN-γ-producing (TH1-type) T-cells are beneficial to patient outcome; however, the clinical consequence of these responses with respect to long-term prognosis in colorectal cancer (CRC) is not understood. Here, we compared the utility of preoperative, peripheral blood-derived IFN-γ(+) T-cell responses specific to carcinoembryonic antigen (CEA), 5T4, or control antigens (n = 64) with tumor staging and clinical details (n = 87) in predicting five-year outcome of CRC patients who underwent resection with curative intent. Although disease recurrence was more likely in patients with stage III tumors, the presence of preoperative, CEA-specific IFN-γ-producing T-cells identified patients at a statistically significantly greater risk of tumor recurrence following surgical resection, irrespective of tumor stage (odds ratio = 5.00, 95% confidence interval = 1.96 to 12.77, two-sided P <.001). Responses to other antigens, including 5T4, did not reflect outcome. Whilst these results initially appear surprising, they could improve prognostication and help redirect adjuvant treatments. [ABSTRACT FROM AUTHOR]
- Published
- 2015
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188. Treg-driven tumour control by PI3Kδ inhibition limits myeloid-derived suppressor cell expansion.
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Lauder, Sarah N., Smart, Kathryn, Bart, Valentina M. T., Pires, Ana, Scott, Jake, Milutinovic, Stefan, Godkin, Andrew, Vanhaesebroeck, Bart, and Gallimore, Awen
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- *
CELL physiology , *IMPACT of Event Scale , *RESEARCH funding , *TUMORS , *T cells , *ANIMALS , *MICE - Abstract
Background: Recent studies have demonstrated that blocking the PI3Kδ signalling enzyme (by administering a small molecule inhibitor, PI-3065) can potently improve the anti-tumour T-cell response through direct inhibition of Tregs. This treatment also has a negative impact on MDSC numbers but the primary mechanism driving this effect has remained unclear.Methods: The 4T1 breast cancer mouse model was used in combination with PI-3065 to gain insights into the effect of PI3Kδ inhibition on MDSCs.Results: PI-3065 treatment resulted in a concomitant reduction in MDSC expansion and tumour size. However, targeting Tregs independent of PI-3065 was also associated with reduced tumour volume and MDSC numbers. Surgical removal of tumours resulted in a rapid and significant decline in MDSC numbers, whilst ex vivo studies using cells from PI-3065-treated mice demonstrated no direct effect of the inhibitor on MDSC activity.Conclusions: Our data suggest that MDSCs are not inhibited directly by PI-3065 treatment but that their reduced recruitment and immunosuppression within the tumour microenvironment is an indirect consequence of PI3Kδ-inhibition-driven tumour control. This indicates that PI3Kδ inhibition drives tumour immunity by breaking down multiple immunosuppressive pathways through both direct mechanisms (on Treg) and indirect mechanisms, secondary to tumour control (on MDSCs). [ABSTRACT FROM AUTHOR]- Published
- 2022
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189. Persistent COVID-19 Infection in Wiskott-Aldrich Syndrome Cleared Following Therapeutic Vaccination: a Case Report.
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Bradley, Rachel E., Ponsford, Mark J., Scurr, Martin J., Godkin, Andrew, Jolles, Stephen, On behalf of the Immunodeficiency Centre for Wales, Bramhall, Kathryn, Price, Colin R., Evans, Kimberly, Carne, Emily, El-Shanawany, Tariq, and Cousins, Richard
- Subjects
- *
POLIO , *COVID-19 , *WISKOTT-Aldrich syndrome , *REVERSE transcriptase polymerase chain reaction - Abstract
We find that mRNA vaccination allowed induction of humoral and cellular immune responses to SARS-CoV-2, which had not been triggered by the ongoing infection itself, followed by viral clearance. Importantly, vaccination proved well-tolerated and successfully elicited humoral and cellular responses which had not been induced after 120 days of PCR-confirmed SARS-CoV-2 infection. [Extracted from the article]
- Published
- 2022
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190. Pouring petrol on the flames: Using oncolytic virotherapies to enhance tumour immunogenicity.
- Author
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Teijeira Crespo, Alicia, Burnell, Stephanie, Capitani, Lorenzo, Bayliss, Rebecca, Moses, Elise, Mason, Georgina H., Davies, James A., Godkin, Andrew J., Gallimore, Awen M., and Parker, Alan L.
- Subjects
- *
TUMOR microenvironment , *GASOLINE , *FLAME , *VIRAL genomes , *CELL death - Abstract
Oncolytic viruses possess the ability to infect, replicate and lyse malignantly transformed tumour cells. This oncolytic activity amplifies the therapeutic advantage and induces a form of immunogenic cell death, characterized by increased CD8 + T‐cell infiltration into the tumour microenvironment. This important feature of oncolytic viruses can result in the warming up of immunologically 'cold' tumour types, presenting the enticing possibility that oncolytic virus treatment combined with immunotherapies may enhance efficacy. In this review, we assess some of the most promising candidates that might be used for oncolytic virotherapy: immunotherapy combinations. We assess their potential as separate agents or as agents combined into a single therapy, where the immunotherapy is encoded within the genome of the oncolytic virus. The development of such advanced agents will require increasingly sophisticated model systems for their preclinical assessment and evaluation. In vivo rodent model systems are fraught with limitations in this regard. Oncolytic viruses replicate selectively within human cells and therefore require human xenografts in immune‐deficient mice for their evaluation. However, the use of immune‐deficient rodent models hinders the ability to study immune responses against any immunomodulatory transgenes engineered within the viral genome and expressed within the tumour microenvironment. There has therefore been a shift towards the use of more sophisticated ex vivo patient‐derived model systems based on organoids and explant co‐cultures with immune cells, which may be more predictive of efficacy than contrived and artificial animal models. We review the best of those model systems here. [ABSTRACT FROM AUTHOR]
- Published
- 2021
- Full Text
- View/download PDF
191. Prognostic significance of interleukin-17A-producing colorectal tumour antigen-specific T cells.
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Thomson, Amanda, Bento, Diana F. Costa, Scurr, Martin J., Smart, Kathryn, Somerville, Michelle S., Keita, Åsa V., Gallimore, Awen, Godkin, Andrew, and Keita, Åsa V
- Subjects
- *
INTERLEUKINS , *SURVIVAL , *RESEARCH , *RESEARCH methodology , *CANCER relapse , *CASE-control method , *PROGNOSIS , *MEDICAL cooperation , *EVALUATION research , *COLORECTAL cancer , *INTERFERONS , *COMPARATIVE studies , *RESEARCH funding , *TUMOR antigens , *T cells , *MEDICAL specialties & specialists , *LONGITUDINAL method - Abstract
Background: The T cell cytokine profile is a key prognostic indicator of post-surgical outcome for colorectal cancer (CRC). Whilst TH1 (IFN-γ+) cell-mediated responses generated in CRC are well documented and are associated with improved survival, antigen-specific TH17 (IL-17A+) responses have not been similarly measured.Methods: We sought to determine the cytokine profile of circulating tumour antigen-(5T4/CEA) specific T cells of 34 CRC patients to address whether antigen-specific IL-17A responses were detectable and whether these were distinct to IFN-γ responses.Results: As with IFN-γ-producing T cells, anti-5T4/CEA TH17 responses were detectable predominantly in early stage (TNM I/II) CRC patients. Moreover, whilst IL-17A was always produced in association with IFN-γ, this release was mainly from two distinct T cell populations rather than by 'dual producing' T cells. Patients mounting both tumour-specific TH1+/TH17+ responses exhibited prolonged relapse-free survival.Conclusions: Tumour antigen-specific TH17 responses play a beneficial role in preventing post-operative colorectal tumour recurrence. [ABSTRACT FROM AUTHOR]- Published
- 2021
- Full Text
- View/download PDF
192. The nature of the human T cell response to the cancer antigen 5T4 is determined by the balance of regulatory and inflammatory T cells of the same antigen-specificity: implications for vaccine design.
- Author
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Besneux, Matthieu, Greenshields-Watson, Alexander, Scurr, Martin J., MacLachlan, Bruce J., Christian, Adam, Davies, Michael M., Hargest, Rachel, Phillips, Simon, Godkin, Andrew, and Gallimore, Awen
- Subjects
- *
T cells , *ANTIGENS , *CELLS , *TH1 cells , *PROTEINS , *COLON cancer - Abstract
The oncofoetal antigen 5T4 is a promising T cell target in the context of colorectal cancer, as demonstrated by a recent clinical study where 5T4-specific T cell responses, induced by vaccination or cyclophosphamide, were associated with a significantly prolonged survival of patients with metastatic disease. Whilst Th1-type (IFN-γ+) responses specific to 5T4, and other oncofoetal antigens, are often readily detectable in early stage CRC patients and healthy donors, their activity is suppressed as the cancer progresses by CD4+CD25hiFoxp3+ regulatory T cells (Treg) which contribute to the immunosuppressive environment conducive to tumour growth. This study mapped the fine specificity of Th1 and Treg cell responses to the 5T4 protein. Surprisingly, both immunogenic peptides and those recognised by Tregs clustered in the same HLA-DR transcending epitope-rich hotspots within the 5T4 protein. Similarly, regions of low Th1-cell immunogenicity also did not contain peptides capable of stimulating Tregs, further supporting the notion that Treg and Th1 cells recognise the same peptides. Understanding the rules which govern the balance of Th1 and Treg cells responding to a given peptide specificity is, therefore, of fundamental importance to designing strategies for manipulating the balance in favour of Th1 cells, and thus the most effective anti-cancer T cell responses. [ABSTRACT FROM AUTHOR]
- Published
- 2019
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193. Remarkably low affinity of CD4/peptide-major histocompatibility complex class II protein interactions.
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Jönsson, Peter, Southcombe, Jennifer H., Santos, Ana Mafalda, Jiandong Huo, Fernandes, Ricardo A., McColl, James, Lever, Melissa, Evans, Edward J., Hudson, Alexander, Chang, Veronica T., Hanke, Tomáš, Godkin, Andrew, Dunne, Paul D., Horrocks, Mathew H., Palayret, Matthieu, Screaton, Gavin R., Petersen, Jan, Rossjohn, Jamie, Fugger, Lars, and Dushek, Omer
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CD4 antigen , *PEPTIDES , *HISTOCOMPATIBILITY , *PROTEINS , *B cells - Abstract
The αβ T-cell coreceptor CD4 enhances immune responses more than 1 million-fold in some assays, and yet the affinity of CD4 for its ligand, peptide-major histocompatibility class II (pMHC II) on antigen-presenting cells, is so weak that it was previously unquantifiable. Here, we report that a soluble form of CD4 failed to bind detectably to pMHC II in surface plasmon resonance-based assays, establishing a new upper limit for the solution affinity at 2.5 mM. However, when presented multivalently on magnetic beads, soluble CD4 bound pMHC II-expressing B cells, confirming that it is active and allowing mapping of the native coreceptor binding site on pMHC II. Whereas binding was undetectable in solution, the affinity of the CD4/pMHC II interaction could be measured in 2D using CD4- and adhesion molecule-functionalized, supported lipid bilayers, yielding a 2D Kd of ~5,000 molecules/μm2. This value is two to three orders of magnitude higher than previously measured 2D Kd values for interacting leukocyte surface proteins. Calculations indicated, however, that CD4/pMHC II binding would increase rates of T-cell receptor (TCR) complex phosphorylation by threefold via the recruitment of Lck, with only a small, 2-20% increase in the effective affinity of the TCR for pMHC II. The affinity of CD4/pMHC II therefore seems to be set at a value that increases T-cell sensitivity by enhancing phosphorylation, without compromising ligand discrimination. [ABSTRACT FROM AUTHOR]
- Published
- 2016
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194. Enhanced Detection of Antigen-Specific CD4+ T Cells Using Altered Peptide Flanking Residue Peptide-MHC Class II Multimers.
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Holland, Christopher J., Dolton, Garry, Scurr, Martin, Ladell, Kristin, Schauenburg, Andrea J., Miners, Kelly, Madura, Florian, Sewell, Andrew K., Price, David A., Cole, David K., and Godkin, Andrew J.
- Subjects
- *
FLUOROPHORES , *PEPTIDES , *T cells , *CELL populations , *CELL proliferation , *COOPERATIVE binding (Biochemistry) , *BINDING sites , *LIGAND binding (Biochemistry) - Abstract
Fluorochrome-conjugated peptide-MHC (pMHC) class I multimers are staple components of the immunologist's toolbox, enabling reliable quantification and analysis of Ag-specific CD8+ T cells irrespective of functional outputs. In contrast, widespread use of the equivalent pMHC class II (pMHC-II) reagents has been hindered by intrinsically weaker TCR affinities for pMHC-II, a lack of cooperative binding between the TCR and CD4 coreceptor, and a low frequency of Ag-specific CD4+ T cell populations in the peripheral blood. In this study, we show that peptide flanking regions, extending beyond the central nonamer core of MHC-IIbound peptides, can enhance TCR-pMHC-II binding and T cell activation without loss of specificity. Consistent with these findings, pMHC-II multimers incorporating peptide flanking residue modifications proved superior for the ex vivo detection, characterization, and manipulation of Ag-specific CD4+ T cells, highlighting an unappreciated feature of TCR-pMHC-II interactions. [ABSTRACT FROM AUTHOR]
- Published
- 2015
- Full Text
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195. Monitoring regulatory T cells in clinical samples: consensus on an essential marker set and gating strategy for regulatory T cell analysis by flow cytometry.
- Author
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Santegoets, Saskia, Dijkgraaf, Eveline, Battaglia, Alessandra, Beckhove, Philipp, Britten, Cedrik, Gallimore, Awen, Godkin, Andrew, Gouttefangeas, Cecile, Gruijl, Tanja, Koenen, Hans, Scheffold, Alexander, Shevach, Ethan, Staats, Janet, Taskén, Kjetil, Whiteside, Theresa, Kroep, Judith, Welters, Marij, and Burg, Sjoerd
- Subjects
- *
T cells , *FLOW cytometry , *BIOMARKERS , *IMMUNOSUPPRESSION , *CANCER immunotherapy , *HEALTH outcome assessment - Abstract
Regulatory T cell (Treg)-mediated immunosuppression is considered a major obstacle for successful cancer immunotherapy. The association between clinical outcome and Tregs is being studied extensively in clinical trials, but unfortunately, no consensus has been reached about (a) the markers and (b) the gating strategy required to define human Tregs in this context, making it difficult to draw final conclusions. Therefore, we have organized an international workshop on the detection and functional testing of Tregs with leading experts in the field, and 40 participants discussing different analyses and the importance of different markers and context in which Tregs were analyzed. This resulted in a rationally composed ranking list of 'Treg markers'. Subsequently, the proposed Treg markers were tested to get insight into the overlap/differences between the most frequently used Treg definitions and their utility for Treg detection in various human tissues. Here, we conclude that the CD3, CD4, CD25, CD127, and FoxP3 markers are the minimally required markers to define human Treg cells. Staining for Ki67 and CD45RA showed to provide additional information on the activation status of Tregs. The use of markers was validated in a series of PBMC from healthy donors and cancer patients, as well as in tumor-draining lymph nodes and freshly isolated tumors. In conclusion, we propose an essential marker set comprising antibodies to CD3, CD4, CD25, CD127, Foxp3, Ki67, and CD45RA and a corresponding robust gating strategy for the context-dependent analysis of Tregs by flow cytometry. [ABSTRACT FROM AUTHOR]
- Published
- 2015
- Full Text
- View/download PDF
196. More tricks with tetramers: a practical guide to staining T cells with peptide- MHC multimers.
- Author
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Dolton, Garry, Tungatt, Katie, Lloyd, Angharad, Bianchi, Valentina, Theaker, Sarah M., Trimby, Andrew, Holland, Christopher J., Donia, Marco, Godkin, Andrew J., Cole, David K., Thor Straten, Per, Peakman, Mark, Svane, Inge Marie, and Sewell, Andrew K.
- Subjects
- *
IMMUNOSTAINING , *T cells , *MAJOR histocompatibility complex , *PEPTIDES , *IMMUNOGLOBULINS , *FLOW cytometry , *CELL populations - Abstract
Analysis of antigen-specific T-cell populations by flow cytometry with peptide- MHC ( pMHC) multimers is now commonplace. These reagents allow the tracking and phenotyping of T cells during infection, autoimmunity and cancer, and can be particularly revealing when used for monitoring therapeutic interventions. In 2009, we reviewed a number of 'tricks' that could be used to improve this powerful technology. More recent advances have demonstrated the potential benefits of using higher order multimers and of 'boosting' staining by inclusion of an antibody against the pMHC multimer. These developments now allow staining of T cells where the interaction between the pMHC and the T-cell receptor is over 20-fold weaker ( KD > 1 m m) than could previously be achieved. Such improvements are particularly relevant when using pMHC multimers to stain anti-cancer or autoimmune T-cell populations, which tend to bear lower affinity T-cell receptors. Here, we update our previous work to include discussion of newer tricks that can produce substantially brighter staining even when using log-fold lower concentrations of pMHC multimer. We further provide a practical guide to using pMHC multimers that includes a description of several common pitfalls and how to circumvent them. [ABSTRACT FROM AUTHOR]
- Published
- 2015
- Full Text
- View/download PDF
197. Anti-CD8 Antibodies Can Trigger CD8+ T Cell Effector Function in the Absence of TCR Engagement and Improve Peptide-MHCI Tetramer Staining.
- Author
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Clement, Mathew, Ladell, Kristin, Ekeruche-Makinde, Julia, Miles, John J., Edwards, Emily S. J., cDolton, Garry, Williams, Tamsin, Schauenburg, Andrea J. A., Cole, David K., Lauder, Sarah N., Gallimore, Awen M., Godkin, Andrew J., Burrows, Scott R., Price, David A., Sewell, Andrew K., and Wooldridge, Linda
- Subjects
- *
IMMUNOGLOBULINS , *T cells , *PEPTIDES , *MONOCLONAL antibodies , *CELL membranes - Abstract
CD8+ T cells recognize immunogenic peptides presented at the cell surface bound to MHCI molecules. Ag recognition involves the binding of both TCR and CD8 coreceptor to the same peptide-MHCI (pMHCI) ligand. Specificity is determined by the TCR, whereas CD8 mediates effects on Ag sensitivity. Anti-CD8 Abs have been used extensively to examine the role of CD8 in CD8+ T cell activation. However, as previous studies have yielded conflicting results, it is unclear from the literature whether anti-CD8 Abs per se are capable of inducing effector function. In this article, we report on the ability of seven monoclonal anti-human CD8 Abs to activate six human CD8+ T cell clones with a total of five different specificities. Six of seven anti-human CD8 Abs tested did not activate CD8+ T cells. In contrast, one anti-human CD8 Ab, OKT8, induced effector function in all CD8+ T cells examined. Moreover, OKT8 was found to enhance TCR/pMHCI on-rates and, as a consequence, could be used to improve pMHCI tetramer staining and the visualization of Ag-specific CD8+ T cells. The anti-mouse CD8 Abs, CT-CD8a and CT-CD8b, also activated CD8+ T cells despite opposing effects on pMHCI tetramer staining. The observed heterogeneity in the ability of anti-CD8 Abs to trigger T cell effector function provides an explanation for the apparent incongruity observed in previous studies and should be taken into consideration when interpreting results generated with these reagents. Furthermore, the ability of Ab-mediated CD8 engagement to deliver an activation signal underscores the importance of CD8 in CD8+ T cell signaling. [ABSTRACT FROM AUTHOR]
- Published
- 2011
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- View/download PDF
198. AS062 - The progression of liver disease in 69,290 individuals in Wales from 1999–2019: tracking the evolution of liver disease.
- Author
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Pembroke, Tom, John, Gareth, Michalak, Oliwia, Puyk, Berry, Salmon, Jane, Godkin, Andrew, and Yeoman, Andrew
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LIVER diseases , *DISEASE progression - Published
- 2020
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199. A targeted single mutation in influenza A virus universal epitope transforms immunogenicity and protective immunity via CD4 + T cell activation.
- Author
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Hulin-Curtis S, Geary JK, MacLachlan BJ, Altmann DM, Baillon L, Cole DK, Greenshields-Watson A, Hesketh SJ, Humphreys IR, Jones IM, Lauder SN, Mason GH, Smart K, Scourfield DO, Scott J, Sukhova K, Stanton RJ, Wall A, Rizkallah PJ, Barclay WS, Gallimore A, and Godkin A
- Subjects
- Animals, Female, Humans, Mice, CD8-Positive T-Lymphocytes immunology, Epitopes immunology, Influenza, Human immunology, Influenza, Human virology, Influenza, Human prevention & control, Lymphocyte Activation immunology, Orthomyxoviridae Infections immunology, Orthomyxoviridae Infections virology, CD4-Positive T-Lymphocytes immunology, Influenza A virus immunology, Influenza A virus genetics, Mutation, Receptors, Antigen, T-Cell immunology, Receptors, Antigen, T-Cell metabolism, Receptors, Antigen, T-Cell genetics
- Abstract
CD4
+ T cells are central to adaptive immunity. Their role in cross-protection in viral infections such as influenza and severe acute respiratory syndrome (SARS) is well documented; however, molecular rules governing T cell receptor (TCR) engagement of peptide-human leukocyte antigen (pHLA) class II are less understood. Here, we exploit an aspect of HLA class II presentation, the peptide-flanking residues (PFRs), to "tune" CD4+ T cell responses within an in vivo model system of influenza. Using a recombinant virus containing targeted substitutions at immunodominant HLA-DR1 epitopes, we demonstrate limited weight loss and improved clinical scores after heterosubtypic re-challenge. We observe enhanced protection linked to lung-derived influenza-specific CD4+ and CD8+ T cells prior to re-infection. Structural analysis of the ternary TCR:pHLA complex identifies that flanking amino acids influence side chains in the core 9-mer peptide, increasing TCR affinity. Augmentation of CD4+ T cell immunity is achievable with a single mutation, representing a strategy to enhance adaptive immunity that is decoupled from vaccine modality., Competing Interests: Declaration of interests The authors declare no competing interests., (Copyright © 2024 The Authors. Published by Elsevier Inc. All rights reserved.)- Published
- 2024
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200. Lower Humoral and Cellular Immunity Following Asymptomatic SARS-CoV-2 Infection Compared to Symptomatic Infection in Education (The ACE Cohort).
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Hopkins G, Gomez N, Tucis D, Bartlett L, Steers G, Burns E, Brown M, Harvey-Cowlishaw T, Santos R, Lauder SN, Scurr M, Capitani L, Burnell S, Rees T, Smart K, Somerville M, Gallimore A, Perera M, Potts M, Metaxaki M, Krishna B, Jackson H, Tighe P, Onion D, Godkin A, Wills M, and Fairclough L
- Subjects
- Humans, Male, Female, Young Adult, Adult, COVID-19 Vaccines immunology, Cohort Studies, Longitudinal Studies, Vaccination, Immunoglobulin G blood, Immunoglobulin G immunology, United Kingdom epidemiology, Adolescent, Spike Glycoprotein, Coronavirus immunology, COVID-19 immunology, SARS-CoV-2 immunology, Antibodies, Viral blood, Antibodies, Neutralizing blood, Antibodies, Neutralizing immunology, Asymptomatic Infections, Immunity, Cellular, Immunity, Humoral
- Abstract
Purpose: Asymptomatic SARS-CoV-2 infections were widely reported during the COVID-19 pandemic, acting as a hidden source of infection. Many existing studies investigating asymptomatic immunity failed to recruit true asymptomatic individuals. Thus, we conducted a longitudinal cohort study to evaluate humoral- and cell-mediated responses to infection and vaccination in well-defined asymptomatic young adults (the Asymptomatic COVID-19 in Education [ACE] cohort)., Methods: Asymptomatic testing services located at three UK universities identified asymptomatic young adults who were subsequently recruited with age- and sex-matched symptomatic and uninfected controls. Blood and saliva samples were collected after SARS-CoV-2 Wuhan infection, and again after vaccination. 51 participant's anti-spike antibody titres, neutralizing antibodies, and spike-specific T-cell responses were measured, against both Wuhan and Omicron B.1.1.529.1., Results: Asymptomatic participants exhibited reduced Wuhan-specific neutralization antibodies pre- and post-vaccination, as well as fewer Omicron-specific neutralization antibodies post-vaccination, compared to symptomatic participants. Lower Wuhan and Omicron-specific IgG titres in asymptomatic individuals were also observed pre- and post-vaccination, compared to symptomatic participants. There were no differences in salivary IgA levels. Conventional flow cytometry analysis and multi-dimensional clustering analysis indicated unvaccinated asymptomatic participants had significantly fewer Wuhan-specific IL-2 secreting CD4
+ CD45RA+ T cells and activated CD8+ T cells than symptomatic participants, though these differences dissipated after vaccination., Conclusions: Asymptomatic infection results in decreased antibody and T cell responses to further exposure to SARS-CoV-2 variants, compared to symptomatic infection. Post-vaccination, antibody responses are still inferior, but T cell immunity increases to match symptomatic subjects, emphasising the importance of vaccination to help protect asymptomatic individuals against future variants., (© 2024. The Author(s).)- Published
- 2024
- Full Text
- View/download PDF
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