19,775 results on '"Gina, M"'
Search Results
152. Paleodietary reconstruction of Equus simplicidens from the Hagerman Horse Quarry (Idaho, USA) highlights high abrasive habits in North American fossil equids during the Pliocene
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Cirilli, Omar, Semprebon, Gina M., and Bernor, Raymond L.
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- 2024
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153. Hungry for relief: Potential for neurotensin to address comorbid obesity and pain
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Khan, Rabail, Laumet, Geoffroy, and Leinninger, Gina M.
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- 2024
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154. An experimental and chemical kinetic modeling study of 4-butoxyheptane combustion
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Cooper, Sean P., Naser, Nimal, Chatterjee, Tanusree, Kim, Yeonjoon, Kukkadapu, Goutham, Fioroni, Gina M., Kim, Seonah, Mathieu, Olivier, Petersen, Eric L., Pitz, William J., and McCormick, Robert
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- 2024
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155. Health Humanities: A Baseline Survey of Baccalaureate and Graduate Programs in North America
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Berry, Sarah L., Klugman, Craig M., Adams, Charise Alexander, Williams, Anna-leila, Camodeca, Gina M., Leavelle, Tracy N., and Lamb, Erin G.
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- 2023
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156. Phylogeny and historical biogeography of the swallow family (Hirundinidae) inferred from comparisons of thousands of UCE loci
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Schield, Drew R., Brown, Clare E., Shakya, Subir B., Calabrese, Gina M., Safran, Rebecca J., and Sheldon, Frederick H.
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- 2024
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157. The importance of citizen participation in improving comfort and health in obsolete neighbourhoods affected by energy poverty
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Clavijo-Núñez, Susana, Núñez-Camarena, Gina M., Herrera-Limones, Rafael, Hernández-Valencia, Miguel, and Millán-Jiménez, Antonio
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- 2024
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158. Succession of Fungal Communities and Their Functional Profiles in a Decaying Foundation Species
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Rippel, Tyler M. and Wimp, Gina M.
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- 2023
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159. The State of Urotrauma Education Among Residency Programs in the United States: A Systematic Review and Meta-Analysis
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Han, David S., Ingram, Justin W., Gorroochurn, Prakash, Badalato, Gina M., Anderson, Christopher B., Joice, Gregory A., and Simhan, Jay
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- 2023
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160. Inherited CD19 Deficiency Does Not Impair Plasma Cell Formation or Response to CXCL12
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Walker, Kieran, Mistry, Anoop, Watson, Christopher M., Nadat, Fatima, O’Callaghan, Eleanor, Care, Matthew, Crinnion, Laura A., Arumugakani, Gururaj, Bonthron, David T., Carter, Clive, Doody, Gina M., and Savic, Sinisa
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- 2023
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161. Prevalence of Shared Decision-making in Prostate Cancer Screening in New York State
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Mattick, Lindsey J., Biney, Kofi, Dacus, Heather M., O’Sullivan, Gina M., and Ochs-Balcom, Heather M.
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- 2023
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162. Quantification of treprostinil concentration in rat and human using a novel validated and rapid liquid chromatography-tandem mass spectrometry method: Experimental and clinical applications in ischemia–reperfusion injury
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Gallucci, Gina M., Agbabiaka, Mariam Oladepo, Ding, Meiwen, Gohh, Reginald, and Ghonem, Nisanne S.
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- 2024
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163. A patatin-like phospholipase mediates Rickettsia parkeri escape from host membranes.
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Borgo, Gina M, Burke, Thomas P, Tran, Cuong J, Lo, Nicholas TN, Engström, Patrik, and Welch, Matthew D
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Cytosol ,Animals ,Mice ,Rickettsia ,Rickettsia Infections ,Phospholipases ,Amino Acid Transport Systems ,Symporters ,Vector-Borne Diseases ,Infectious Diseases ,Vaccine Related ,Emerging Infectious Diseases ,Biodefense ,Prevention ,Infection ,Good Health and Well Being - Abstract
Rickettsia species of the spotted fever group are arthropod-borne obligate intracellular bacteria that can cause mild to severe human disease. These bacteria invade host cells, replicate in the cell cytosol, and spread from cell to cell. To access the host cytosol and avoid immune detection, they escape membrane-bound vacuoles by expressing factors that disrupt host membranes. Here, we show that a patatin-like phospholipase A2 enzyme (Pat1) facilitates Rickettsia parkeri infection by promoting escape from host membranes and cell-cell spread. Pat1 is important for infection in a mouse model and, at the cellular level, is crucial for efficiently escaping from single and double membrane-bound vacuoles into the host cytosol, and for avoiding host galectins that mark damaged membranes. Pat1 is also important for avoiding host polyubiquitin, preventing recruitment of autophagy receptor p62, and promoting actin-based motility and cell-cell spread.
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- 2022
164. Whole-genome sequence and methylome profiling of the almond [Prunus dulcis (Mill.) D.A. Webb] cultivar ‘Nonpareil’
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D’Amico-Willman, Katherine M, Ouma, Wilberforce Z, Meulia, Tea, Sideli, Gina M, Gradziel, Thomas M, and Fresnedo-Ramírez, Jonathan
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Genetics ,Human Genome ,Epigenome ,Flowers ,Genome ,Plant ,Plant Breeding ,Prunus dulcis ,almond ,Nonpareil ,enzymatic methylation sequencing ,cytosine methylation ,multiplatform genome assembly - Abstract
Almond [Prunus dulcis (Mill.) D.A. Webb] is an economically important, specialty nut crop grown almost exclusively in the United States. Breeding and improvement efforts worldwide have led to the development of key, productive cultivars, including 'Nonpareil,' which is the most widely grown almond cultivar. Thus far, genomic resources for this species have been limited, and a whole-genome assembly for 'Nonpareil' is not currently available despite its economic importance and use in almond breeding worldwide. We generated a 571X coverage genome sequence using Illumina, PacBio, and optical mapping technologies. Gene prediction revealed 49,321 putative genes using MinION Oxford nanopore and Illumina RNA sequencing, and genome annotation found that 68% of predicted models are associated with at least one biological function. Furthermore, epigenetic signatures of almond, namely DNA cytosine methylation, have been implicated in a variety of phenotypes including self-compatibility, bud dormancy, and development of noninfectious bud failure. In addition to the genome sequence and annotation, this report also provides the complete methylome of several almond tissues, including leaf, flower, endocarp, mesocarp, exocarp, and seed coat. Comparisons between methylation profiles in these tissues revealed differences in genome-wide weighted % methylation and chromosome-level methylation enrichment.
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- 2022
165. Patient Health Literacy and Communication with Providers Among Women Living with HIV: A Mixed Methods Study
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Budhwani, Henna, Gakumo, C Ann, Yigit, Ibrahim, Rice, Whitney S, Fletcher, Faith E, Whitfield, Samantha, Ross, Shericia, Konkle-Parker, Deborah J, Cohen, Mardge H, Wingood, Gina M, Metsch, Lisa R, Adimora, Adaora A, Taylor, Tonya N, Wilson, Tracey E, Weiser, Sheri D, Sosanya, Oluwakemi, Goparaju, Lakshmi, Gange, Stephen, Kempf, Mirjam-Colette, Turan, Bulent, and Turan, Janet M
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Health Services and Systems ,Public Health ,Health Sciences ,Sexually Transmitted Infections ,Health Disparities ,Health Services ,Clinical Research ,Minority Health ,HIV/AIDS ,Prevention ,Women's Health ,Infectious Diseases ,Behavioral and Social Science ,7.1 Individual care needs ,Infection ,Good Health and Well Being ,Anti-Retroviral Agents ,Communication ,Female ,HIV Infections ,Health Literacy ,Humans ,Trust ,United States ,Health communication ,Health literacy ,HIV ,African American ,Latina ,Public Health and Health Services ,Social Work ,Public health - Abstract
In this mixed-methods study, we examine the relationship between provider communication and patient health literacy on HIV continuum of care outcomes among women living with HIV in the United States. We thematically coded qualitative data from focus groups and interviews (N = 92) and conducted mediation analyses with quantitative survey data (N = 1455) collected from Women's Interagency HIV Study participants. Four qualitative themes related to provider communication emerged: importance of respect and non-verbal cues; providers' expressions of condescension and judgement; patient health literacy; and unclear, insufficient provider communication resulting in diminished trust. Quantitative mediation analyses suggest that higher health literacy is associated with higher perceived patient-provider interaction quality, which in turn is associated with higher levels of trust in HIV providers, improved antiretroviral medication adherence, and reduced missed clinical visits. Findings indicate that enhancing provider communication and bolstering patient health literacy could have a positive impact on the HIV continuum of care.
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- 2022
166. Mendelian randomization supports bidirectional causality between telomere length and clonal hematopoiesis of indeterminate potential
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Nakao, Tetsushi, Bick, Alexander G, Taub, Margaret A, Zekavat, Seyedeh M, Uddin, Md M, Niroula, Abhishek, Carty, Cara L, Lane, John, Honigberg, Michael C, Weinstock, Joshua S, Pampana, Akhil, Gibson, Christopher J, Griffin, Gabriel K, Clarke, Shoa L, Bhattacharya, Romit, Assimes, Themistocles L, Emery, Leslie S, Stilp, Adrienne M, Wong, Quenna, Broome, Jai, Laurie, Cecelia A, Khan, Alyna T, Smith, Albert V, Blackwell, Thomas W, Codd, Veryan, Nelson, Christopher P, Yoneda, Zachary T, Peralta, Juan M, Bowden, Donald W, Irvin, Marguerite R, Boorgula, Meher, Zhao, Wei, Yanek, Lisa R, Wiggins, Kerri L, Hixson, James E, Gu, C Charles, Peloso, Gina M, Roden, Dan M, Reupena, Muagututi’a S, Hwu, Chii-Min, DeMeo, Dawn L, North, Kari E, Kelly, Shannon, Musani, Solomon K, Bis, Joshua C, Lloyd-Jones, Donald M, Johnsen, Jill M, Preuss, Michael, Tracy, Russell P, Peyser, Patricia A, Qiao, Dandi, Desai, Pinkal, Curran, Joanne E, Freedman, Barry I, Tiwari, Hemant K, Chavan, Sameer, Smith, Jennifer A, Smith, Nicholas L, Kelly, Tanika N, Hidalgo, Bertha, Cupples, L Adrienne, Weeks, Daniel E, Hawley, Nicola L, Minster, Ryan L, Deka, Ranjan, Naseri, Take T, de las Fuentes, Lisa, Raffield, Laura M, Morrison, Alanna C, Vries, Paul S, Ballantyne, Christie M, Kenny, Eimear E, Rich, Stephen S, Whitsel, Eric A, Cho, Michael H, Shoemaker, M Benjamin, Pace, Betty S, Blangero, John, Palmer, Nicholette D, Mitchell, Braxton D, Shuldiner, Alan R, Barnes, Kathleen C, Redline, Susan, Kardia, Sharon LR, Abecasis, Gonçalo R, Becker, Lewis C, Heckbert, Susan R, He, Jiang, Post, Wendy, Arnett, Donna K, Vasan, Ramachandran S, Darbar, Dawood, Weiss, Scott T, McGarvey, Stephen T, de Andrade, Mariza, Chen, Yii-Der Ida, Kaplan, Robert C, Meyers, Deborah A, Custer, Brian S, and Correa, Adolfo
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Cardiovascular ,Genetics ,Aging ,Heart Disease ,Heart Disease - Coronary Heart Disease ,Human Genome ,Atherosclerosis ,Aetiology ,2.1 Biological and endogenous factors ,Good Health and Well Being ,Samoan Obesity ,Lifestyle and Genetic Adaptations Study (OLaGA) Group ,NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium - Abstract
Human genetic studies support an inverse causal relationship between leukocyte telomere length (LTL) and coronary artery disease (CAD), but directionally mixed effects for LTL and diverse malignancies. Clonal hematopoiesis of indeterminate potential (CHIP), characterized by expansion of hematopoietic cells bearing leukemogenic mutations, predisposes both hematologic malignancy and CAD. TERT (which encodes telomerase reverse transcriptase) is the most significantly associated germline locus for CHIP in genome-wide association studies. Here, we investigated the relationship between CHIP, LTL, and CAD in the Trans-Omics for Precision Medicine (TOPMed) program (n = 63,302) and UK Biobank (n = 47,080). Bidirectional Mendelian randomization studies were consistent with longer genetically imputed LTL increasing propensity to develop CHIP, but CHIP then, in turn, hastens to shorten measured LTL (mLTL). We also demonstrated evidence of modest mediation between CHIP and CAD by mLTL. Our data promote an understanding of potential causal relationships across CHIP and LTL toward prevention of CAD.
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- 2022
167. Sanctuary People: Faith-Based Organizing in Latina/o Communities
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Gina M. Pérez
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- 2024
168. The New York Section EMPIRE Collaborative: Piloting a Multi-Institutional, Simulation-Based Surgical Skills Boot Camp for Junior Urology Residents
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Lee, Justin, Venishetty, Nikit, Movassaghi, Miyad, Kovac, Evan, Winer, Andrew, Anderson, Christopher B., Small, Alexander C., Badalato, Gina M., Atallah, William, Basralian, Kevin, Dwivedi, Priyanka, Ernst, Michael, Winer, Andrew, Ghodoussipour, Saum, Jang, Thomas, Kanofsky, Jamie, Kim, Jason, Marean, Michael, Munver, Ravi, Phillips, Courtney, Polland, Allison, Sadiq, Areeba, Say, Rollin, Stone, Nelson, and Veneziano, Domenico
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- 2024
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169. Telehealth and Telemedicine: Regulatory and Medicolegal Landscape
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Bonica, Gina M., Johns, Richard W., and Jadvar, Hossein
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- 2024
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170. A reversible system based on hybrid toggle radius-4 cellular automata and its application as a block cipher
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Lira, Everton R., de Macêdo, Heverton B., Lima, Danielli A., Alt, Leonardo, and Oliveira, Gina M. B.
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Computer Science - Cryptography and Security ,Computer Science - Neural and Evolutionary Computing ,E.3 ,F.1.1 - Abstract
The dynamical system described herein uses a hybrid cellular automata (CA) mechanism to attain reversibility, and this approach is adapted to create a novel block cipher algorithm called HCA. CA are widely used for modeling complex systems and employ an inherently parallel model. Therefore, applications derived from CA have a tendency to fit very well in the current computational paradigm where scalability and multi-threading potential are quite desirable characteristics. HCA model has recently received a patent by the Brazilian agency INPI. Several evaluations and analyses performed on the model are presented here, such as theoretical discussions related to its reversibility and an analysis based on graph theory, which reduces HCA security to the well-known Hamiltonian cycle problem that belongs to the NP-complete class. Finally, the cryptographic robustness of HCA is empirically evaluated through several tests, including avalanche property compliance and the NIST randomness suite., Comment: 34 pages, 12 figures
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- 2021
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171. Antimicrobial Susceptibility Trends in E. coli Causing Pediatric Urinary Tract Infections in the United States
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Simren Mahajan, Neena Kanwar, Gina M. Morgan, Rodrigo E. Mendes, Brian R. Lee, Dithi Banerjee, and Rangaraj Selvarangan
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antimicrobial susceptibility ,pediatric ,MIC ,E. coli ,UTI ,susceptibility trends ,Medicine - Abstract
Urinary tract infections (UTIs) are among the most common pediatric infections. This study evaluated the antimicrobial susceptibility patterns of 3511 uropathogenic E. coli (UPEC) isolated from pediatric patients in the United States from 2014 to 2023. The database from the SENTRY antimicrobial surveillance program from 89 medical centers was utilized as a data source. The antimicrobial susceptibility was tested using the microbroth dilution technique against 24 antimicrobial agents. MICs were determined using the CLSI/EUCAST/FDA breakpoint criteria. All the antimicrobials reported susceptibility rates above 80% except for tetracycline (76.2%), trimethoprim–sulfamethoxazole (69.7%), and ampicillin–sulbactam (55.7%). During the study period, the susceptibility rates remained stable for most antimicrobial agents. However, significant differences were observed among age, gender, and U.S. census regions, with the Middle Atlantic showing the lowest and the Mountain region the highest susceptibility rates, for most antimicrobials. The incidence of ESBL UPEC increased from 7.1% to 10.8% between 2014 and 2023, while the prevalence of the MDR phenotype remained relatively stable. The prevalence of both ESBL and MDR phenotypes was highest among infants and young children (0–24 months), with the highest resistance rates from the Pacific region. Knowledge of the landscape of antibiotic resistance in pediatric UPEC will help healthcare providers to better tailor empiric treatment regimens for most UTI infections.
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- 2024
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172. Gender Differences in Cardiac Chronotropic Control: Implications for Heart Rate Variability Research
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Williams, DeWayne P, Joseph, Nicholas, Gerardo, Gina M, Hill, LaBarron K, Koenig, Julian, and Thayer, Julian F
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Cardiovascular ,Heart Disease ,Female ,Heart ,Heart Rate ,Humans ,Male ,Sex Characteristics ,Sex Factors ,Heart period ,Heart rate variability ,Heart rate ,Gender differences ,Sex differences ,Psychology ,Cognitive Sciences ,Experimental Psychology - Abstract
There is a continuing debate concerning "adjustments" to heart period variability [i.e., heart rate variability (HRV)] for the heart period [i.e., increases inter-beat-intervals (IBI)]. To date, such arguments have not seriously considered the impact a demographic variable, such as gender, can have on the association between HRV and the heart period. A prior meta-analysis showed women to have greater HRV compared to men despite having shorter IBI and higher heart rate (HR). Thus, it is plausible that men and women differ in the association between HRV and HR/IBI. Thus, the present study investigates the potential moderating effect of gender on the association between HRV and indices of cardiac chronotropy, including both HR and IBI. Data from 633 participants (339 women) were available for analysis. Cardiac measures were assessed during a 5-min baseline-resting period. HRV measures included the standard deviation of inter-beat-intervals, root mean square of successive differences, and autoregressive high frequency power. Moderation analyses showed gender significantly moderated the association between all HRV variables and both HR and IBI (each p
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- 2022
173. Organic Chemical Contaminants in Water System Infrastructure Following Wildfire
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Draper, William M, Li, Na, Solomon, Gina M, Heaney, Yvonne C, Crenshaw, Reese B, Hinrichs, Richard L, and Chandrasena, R Esala P
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Environmental Sciences ,Pollution and Contamination ,Foodborne Illness ,drinking water infrastructure ,wildfire damage ,organic chemical contaminants ,sources ,mechanisms - Abstract
Wildfires have destroyed multiple residential communities in California in recent years. After fires in 2017 and 2018, high concentrations of benzene and other volatile organic compounds (VOCs) were found in public drinking water systems in fire-affected areas. The sources of the contamination and appropriate remediation have been urgent matters for investigation. This study characterizes target and non-target VOCs and semi volatile organic compounds (SVOCs) in water from a highly contaminated service line after the 2018 Camp Fire (Paradise, CA). Ninety-five organic compounds were identified or tentatively identified in the service line. Laboratory combustion experiments with drinking water pipes made of polyvinyl chloride (PVC), cross-linked polyethylene (PEX) and high-density polyethylene (HDPE) and a review of the literature were used to evaluate potential sources of the detected chemicals. Among the service line contaminants were thirty-two compounds associated with PVC pyrolysis and twenty-eight organic compounds also associated with the pyrolysis of polyethylene. The service line sample also contained fifty-five compounds associated with uncontrolled burning of biomass and waste materials. The findings support hypotheses that wildfires can contaminate drinking water systems both by thermal damage to plastic pipes and intrusion of smoke. Residual chlorine disinfectant in the water system modifies the contaminant distribution observed.
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- 2022
174. Connecting copper and cancer: from transition metal signalling to metalloplasia
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Ge, Eva J, Bush, Ashley I, Casini, Angela, Cobine, Paul A, Cross, Justin R, DeNicola, Gina M, Dou, Q Ping, Franz, Katherine J, Gohil, Vishal M, Gupta, Sanjeev, Kaler, Stephen G, Lutsenko, Svetlana, Mittal, Vivek, Petris, Michael J, Polishchuk, Roman, Ralle, Martina, Schilsky, Michael L, Tonks, Nicholas K, Vahdat, Linda T, Van Aelst, Linda, Xi, Dan, Yuan, Peng, Brady, Donita C, and Chang, Christopher J
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2.1 Biological and endogenous factors ,Aetiology ,Cancer ,Autophagy ,Cell Proliferation ,Copper ,Humans ,Neoplasms ,Signal Transduction ,Medical and Health Sciences ,Oncology & Carcinogenesis - Abstract
Copper is an essential nutrient whose redox properties make it both beneficial and toxic to the cell. Recent progress in studying transition metal signalling has forged new links between researchers of different disciplines that can help translate basic research in the chemistry and biology of copper into clinical therapies and diagnostics to exploit copper-dependent disease vulnerabilities. This concept is particularly relevant in cancer, as tumour growth and metastasis have a heightened requirement for this metal nutrient. Indeed, the traditional view of copper as solely an active site metabolic cofactor has been challenged by emerging evidence that copper is also a dynamic signalling metal and metalloallosteric regulator, such as for copper-dependent phosphodiesterase 3B (PDE3B) in lipolysis, mitogen-activated protein kinase kinase 1 (MEK1) and MEK2 in cell growth and proliferation and the kinases ULK1 and ULK2 in autophagy. In this Perspective, we summarize our current understanding of the connection between copper and cancer and explore how challenges in the field could be addressed by using the framework of cuproplasia, which is defined as regulated copper-dependent cell proliferation and is a representative example of a broad range of metalloplasias. Cuproplasia is linked to a diverse array of cellular processes, including mitochondrial respiration, antioxidant defence, redox signalling, kinase signalling, autophagy and protein quality control. Identifying and characterizing new modes of copper-dependent signalling offers translational opportunities that leverage disease vulnerabilities to this metal nutrient.
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- 2022
175. The Interplay of Environmental Exposures and Mental Health: Setting an Agenda
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Reuben, Aaron, Manczak, Erika M, Cabrera, Laura Y, Alegria, Margarita, Bucher, Meghan L, Freeman, Emily C, Miller, Gary W, Solomon, Gina M, and Perry, Melissa J
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Public Health ,Health Sciences ,Behavioral and Social Science ,Prevention ,Mental Health ,Mental health ,Good Health and Well Being ,Environmental Exposure ,Environmental Health ,Humans ,Environmental Sciences ,Medical and Health Sciences ,Toxicology ,Biomedical and clinical sciences ,Environmental sciences ,Health sciences - Abstract
BackgroundTo date, health-effects research on environmental stressors has rarely focused on behavioral and mental health outcomes. That lack of research is beginning to change. Science and policy experts in the environmental and behavioral health sciences are coming together to explore converging evidence on the relationship-harmful or beneficial-between environmental factors and mental health.ObjectivesTo organize evidence and catalyze new findings, the National Academy of Sciences, Engineering, and Medicine (NASEM) hosted a workshop 2-3 February 2021 on the interplay of environmental exposures and mental health outcomes.MethodsThis commentary provides a nonsystematic, expert-guided conceptual review and interdisciplinary perspective on the convergence of environmental and mental health, drawing from hypotheses, findings, and research gaps presented and discussed at the workshop. Featured is an overview of what is known about the intersection of the environment and mental health, focusing on the effects of neurotoxic pollutants, threats related to climate change, and the importance of health promoting environments, such as urban green spaces.DiscussionWe describe what can be gained by bridging environmental and psychological research disciplines and present a synthesis of what is needed to advance interdisciplinary investigations. We also consider the implications of the current evidence for a) foundational knowledge of the etiology of mental health and illness, b) toxicant policy and regulation, c) definitions of climate adaptation and community resilience, d) interventions targeting marginalized communities, and e) the future of research training and funding. We include a call to action for environmental and mental health researchers, focusing on the environmental contributions to mental health to unlock primary prevention strategies at the population level and open equitable paths for preventing mental disorders and achieving optimal mental health for all. https://doi.org/10.1289/EHP9889.
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- 2022
176. Author Correction: Detection of COVID-19 using multimodal data from a wearable device: results from the first TemPredict Study
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Mason, Ashley E, Hecht, Frederick M, Davis, Shakti K, Natale, Joseph L, Hartogensis, Wendy, Damaso, Natalie, Claypool, Kajal T, Dilchert, Stephan, Dasgupta, Subhasis, Purawat, Shweta, Viswanath, Varun K, Klein, Amit, Chowdhary, Anoushka, Fisher, Sarah M, Anglo, Claudine, Puldon, Karena Y, Veasna, Danou, Prather, Jenifer G, Pandya, Leena S, Fox, Lindsey M, Busch, Michael, Giordano, Casey, Mercado, Brittany K, Song, Jining, Jaimes, Rafael, Baum, Brian S, Telfer, Brian A, Philipson, Casandra W, Collins, Paula P, Rao, Adam A, Wang, Edward J, Bandi, Rachel H, Choe, Bianca J, Epel, Elissa S, Epstein, Stephen K, Krasnoff, Joanne B, Lee, Marco B, Lee, Shi-Wen, Lopez, Gina M, Mehta, Arpan, Melville, Laura D, Moon, Tiffany S, Mujica-Parodi, Lilianne R, Noel, Kimberly M, Orosco, Michael A, Rideout, Jesse M, Robishaw, Janet D, Rodriguez, Robert M, Shah, Kaushal H, Siegal, Jonathan H, Gupta, Amarnath, Altintas, Ilkay, and Smarr, Benjamin L
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Information and Computing Sciences ,Human-Centred Computing ,Good Health and Well Being - Published
- 2022
177. Chemical contaminant levels in edible seaweeds of the Salish Sea and implications for their consumption
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Hahn, Jennifer L, Van Alstyne, Kathryn L, Gaydos, Joseph K, Wallis, Lindsay K, West, James E, Hollenhorst, Steven J, Ylitalo, Gina M, Poppenga, Robert H, Bolton, Jennie L, McBride, David E, and Sofield, Ruth M
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Environmental Sciences ,Pollution and Contamination ,Clinical Research ,Benzo(a)pyrene ,Cadmium ,Dibenzofurans ,Environmental Monitoring ,Fluorocarbons ,Halogenated Diphenyl Ethers ,Humans ,Lead ,Mercury ,Persistent Organic Pollutants ,Pesticides ,Polychlorinated Biphenyls ,Polychlorinated Dibenzodioxins ,Seaweed ,Water Pollutants ,Chemical ,General Science & Technology - Abstract
Despite growing interest in edible seaweeds, there is limited information on seaweed chemical contaminant levels in the Salish Sea. Without this knowledge, health-based consumption advisories can not be determined for consumers that include Tribes and First Nations, Asian and Pacific Islander community members, and recreational harvesters. We measured contaminant concentrations in edible seaweeds (Fucus distichus, F. spiralis, and Nereocystis luetkeana) from 43 locations in the Salish Sea. Metals were analyzed in all samples, and 94 persistent organic pollutants (POPs) (i.e. 40 PCBs, 15 PBDEs, 17 PCDD/Fs, and 22 organochlorine pesticides) and 51 PAHs were analyzed in Fucus spp. We compared concentrations of contaminants to human health-based screening levels calculated from the USEPA and to international limits. We then worked with six focal contaminants that either exceeded screening levels or international limits (Cd, total Hg, Pb, benzo[a]pyrene [BaP], and PCBs) or are of regional interest (total As). USEPA cancer-based screening levels were exceeded in 30 samples for the PCBs and two samples for BaP. Cadmium concentrations did not exceed the USEPA noncancer-based screening level but did exceed international limits at all sites. Lead exceeded international limits at three sites. Because there are no screening levels for total Hg and total As, and to be conservative, we made comparisons to methyl Hg and inorganic As screening levels. All samples were below the methyl Hg and above the inorganic As screening levels. Without knowledge of the As speciation, we cannot assess the health risk associated with the As. While seaweed was the focus, we did not consider contaminant exposure from consuming other foods. Other chemicals, such as contaminants of emerging concern (e.g., PFAS, pharmaceuticals and personal care products), should also be considered. Additionally, although we focused on toxicological aspects, there are cultural and health benefits of seaweed use that may affect consumer choice.
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- 2022
178. Whole genome sequence analysis of blood lipid levels in >66,000 individuals
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Selvaraj, Margaret Sunitha, Li, Xihao, Li, Zilin, Pampana, Akhil, Zhang, David Y, Park, Joseph, Aslibekyan, Stella, Bis, Joshua C, Brody, Jennifer A, Cade, Brian E, Chuang, Lee-Ming, Chung, Ren-Hua, Curran, Joanne E, de las Fuentes, Lisa, de Vries, Paul S, Duggirala, Ravindranath, Freedman, Barry I, Graff, Mariaelisa, Guo, Xiuqing, Heard-Costa, Nancy, Hidalgo, Bertha, Hwu, Chii-Min, Irvin, Marguerite R, Kelly, Tanika N, Kral, Brian G, Lange, Leslie, Li, Xiaohui, Lisa, Martin, Lubitz, Steven A, Manichaikul, Ani W, Michael, Preuss, Montasser, May E, Morrison, Alanna C, Naseri, Take, O’Connell, Jeffrey R, Palmer, Nicholette D, Peyser, Patricia A, Reupena, Muagututia S, Smith, Jennifer A, Sun, Xiao, Taylor, Kent D, Tracy, Russell P, Tsai, Michael Y, Wang, Zhe, Wang, Yuxuan, Bao, Wei, Wilkins, John T, Yanek, Lisa R, Zhao, Wei, Arnett, Donna K, Blangero, John, Boerwinkle, Eric, Bowden, Donald W, Chen, Yii-Der Ida, Correa, Adolfo, Cupples, L Adrienne, Dutcher, Susan K, Ellinor, Patrick T, Fornage, Myriam, Gabriel, Stacey, Germer, Soren, Gibbs, Richard, He, Jiang, Kaplan, Robert C, Kardia, Sharon LR, Kim, Ryan, Kooperberg, Charles, Loos, Ruth JF, Viaud-Martinez, Karine A, Mathias, Rasika A, McGarvey, Stephen T, Mitchell, Braxton D, Nickerson, Deborah, North, Kari E, Psaty, Bruce M, Redline, Susan, Reiner, Alexander P, Vasan, Ramachandran S, Rich, Stephen S, Willer, Cristen, Rotter, Jerome I, Rader, Daniel J, Lin, Xihong, Peloso, Gina M, and Natarajan, Pradeep
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Biological Sciences ,Biomedical and Clinical Sciences ,Genetics ,Epidemiology ,Health Sciences ,Biotechnology ,Heart Disease - Coronary Heart Disease ,Cardiovascular ,Heart Disease ,Human Genome ,Aetiology ,2.1 Biological and endogenous factors ,Good Health and Well Being ,Alleles ,Cholesterol ,LDL ,Genome-Wide Association Study ,Humans ,Lipids ,Whole Genome Sequencing ,NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium - Abstract
Blood lipids are heritable modifiable causal factors for coronary artery disease. Despite well-described monogenic and polygenic bases of dyslipidemia, limitations remain in discovery of lipid-associated alleles using whole genome sequencing (WGS), partly due to limited sample sizes, ancestral diversity, and interpretation of clinical significance. Among 66,329 ancestrally diverse (56% non-European) participants, we associate 428M variants from deep-coverage WGS with lipid levels; ~400M variants were not assessed in prior lipids genetic analyses. We find multiple lipid-related genes strongly associated with blood lipids through analysis of common and rare coding variants. We discover several associated rare non-coding variants, largely at Mendelian lipid genes. Notably, we observe rare LDLR intronic variants associated with markedly increased LDL-C, similar to rare LDLR exonic variants. In conclusion, we conducted a systematic whole genome scan for blood lipids expanding the alleles linked to lipids for multiple ancestries and characterize a clinically-relevant rare non-coding variant model for lipids.
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- 2022
179. Non-linear machine learning models incorporating SNPs and PRS improve polygenic prediction in diverse human populations
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Elgart, Michael, Lyons, Genevieve, Romero-Brufau, Santiago, Kurniansyah, Nuzulul, Brody, Jennifer A, Guo, Xiuqing, Lin, Henry J, Raffield, Laura, Gao, Yan, Chen, Han, de Vries, Paul, Lloyd-Jones, Donald M, Lange, Leslie A, Peloso, Gina M, Fornage, Myriam, Rotter, Jerome I, Rich, Stephen S, Morrison, Alanna C, Psaty, Bruce M, Levy, Daniel, Redline, Susan, and Sofer, Tamar
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Biological Sciences ,Aetiology ,2.1 Biological and endogenous factors ,Genetic Predisposition to Disease ,Genome-Wide Association Study ,Humans ,Machine Learning ,Multifactorial Inheritance ,Polymorphism ,Single Nucleotide ,NHLBI’s Trans-Omics in Precision Medicine (TOPMed) Consortium ,Biological sciences ,Biomedical and clinical sciences - Abstract
Polygenic risk scores (PRS) are commonly used to quantify the inherited susceptibility for a trait, yet they fail to account for non-linear and interaction effects between single nucleotide polymorphisms (SNPs). We address this via a machine learning approach, validated in nine complex phenotypes in a multi-ancestry population. We use an ensemble method of SNP selection followed by gradient boosted trees (XGBoost) to allow for non-linearities and interaction effects. We compare our results to the standard, linear PRS model developed using PRSice, LDpred2, and lassosum2. Combining a PRS as a feature in an XGBoost model results in a relative increase in the percentage variance explained compared to the standard linear PRS model by 22% for height, 27% for HDL cholesterol, 43% for body mass index, 50% for sleep duration, 58% for systolic blood pressure, 64% for total cholesterol, 66% for triglycerides, 77% for LDL cholesterol, and 100% for diastolic blood pressure. Multi-ancestry trained models perform similarly to specific racial/ethnic group trained models and are consistently superior to the standard linear PRS models. This work demonstrates an effective method to account for non-linearities and interaction effects in genetics-based prediction models.
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- 2022
180. Mechanisms governing target search and binding dynamics of hypoxia-inducible factors
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Chen, Yu, Cattoglio, Claudia, Dailey, Gina M, Zhu, Qiulin, Tjian, Robert, and Darzacq, Xavier
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Genetics ,Biotechnology ,Cancer ,Human Genome ,2.1 Biological and endogenous factors ,1.1 Normal biological development and functioning ,Aetiology ,Underpinning research ,Humans ,Basic Helix-Loop-Helix Transcription Factors ,Gene Expression Regulation ,Hypoxia ,DNA ,Chromatin ,Hypoxia-Inducible Factor 1 ,alpha Subunit ,single particle tracking ,transcription factors ,intrinsically disordered regions ,Human ,chromosomes ,gene expression ,human ,molecular biophysics ,structural biology ,Biochemistry and Cell Biology - Abstract
Transcription factors (TFs) are classically attributed a modular construction, containing well-structured sequence-specific DNA-binding domains (DBDs) paired with disordered activation domains (ADs) responsible for protein-protein interactions targeting co-factors or the core transcription initiation machinery. However, this simple division of labor model struggles to explain why TFs with identical DNA-binding sequence specificity determined in vitro exhibit distinct binding profiles in vivo. The family of hypoxia-inducible factors (HIFs) offer a stark example: aberrantly expressed in several cancer types, HIF-1α and HIF-2α subunit isoforms recognize the same DNA motif in vitro - the hypoxia response element (HRE) - but only share a subset of their target genes in vivo, while eliciting contrasting effects on cancer development and progression under certain circumstances. To probe the mechanisms mediating isoform-specific gene regulation, we used live-cell single particle tracking (SPT) to investigate HIF nuclear dynamics and how they change upon genetic perturbation or drug treatment. We found that HIF-α subunits and their dimerization partner HIF-1β exhibit distinct diffusion and binding characteristics that are exquisitely sensitive to concentration and subunit stoichiometry. Using domain-swap variants, mutations, and a HIF-2α specific inhibitor, we found that although the DBD and dimerization domains are important, another main determinant of chromatin binding and diffusion behavior is the AD-containing intrinsically disordered region (IDR). Using Cut&Run and RNA-seq as orthogonal genomic approaches, we also confirmed IDR-dependent binding and activation of a specific subset of HIF target genes. These findings reveal a previously unappreciated role of IDRs in regulating the TF search and binding process that contribute to functional target site selectivity on chromatin.
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- 2022
181. Advanced one-pot deconstruction and valorization of lignocellulosic biomass into triacetic acid lactone using Rhodosporidium toruloides
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Otoupal, Peter B, Geiselman, Gina M, Oka, Asun M, Barcelos, Carolina A, Choudhary, Hemant, Dinh, Duy, Zhong, Wenqing, Hwang, HeeJin, Keasling, Jay D, Mukhopadhyay, Aindrila, Sundstrom, Eric, Haushalter, Robert W, Sun, Ning, Simmons, Blake A, and Gladden, John M
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Biological Sciences ,Industrial Biotechnology ,Responsible Consumption and Production ,Affordable and Clean Energy ,Microbiology ,Biotechnology - Abstract
BackgroundRhodosporidium toruloides is capable of co-utilization of complex carbon sources and robust growth from lignocellulosic hydrolysates. This oleaginous yeast is therefore an attractive host for heterologous production of valuable bioproducts at high titers from low-cost, deconstructed biomass in an economically and environmentally sustainable manner. Here we demonstrate this by engineering R. toruloides to produce the polyketide triacetic acid lactone (TAL) directly from unfiltered hydrolysate deconstructed from biomass with minimal unit process operations.ResultsIntroduction of the 2-pyrone synthase gene into R. toruloides enabled the organism to produce 2.4 g/L TAL from simple media or 2.0 g/L from hydrolysate produced from sorghum biomass. Both of these titers are on par with titers from other better-studied microbial hosts after they had been heavily engineered. We next demonstrate that filtered hydrolysates produced from ensiled sorghum are superior to those derived from dried sorghum for TAL production, likely due to the substantial organic acids produced during ensiling. We also demonstrate that the organic acids found in ensiled biomass can be used for direct synthesis of ionic liquids within the biomass pretreatment process, enabling consolidation of unit operations of in-situ ionic liquid synthesis, pretreatment, saccharification, and fermentation into a one-pot, separations-free process. Finally, we demonstrate this consolidation in a 2 L bioreactor using unfiltered hydrolysate, producing 3.9 g/L TAL.ConclusionMany steps involved in deconstructing biomass into fermentable substrate can be combined into a distinct operation, and directly fed to cultures of engineered R. toruloides cultures for subsequent valorization into gram per liter titers of TAL in a cost-effective manner.
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- 2022
182. Evaluation of engineered low-lignin poplar for conversion into advanced bioproducts
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Lin, Chien-Yuan, Geiselman, Gina M, Liu, Di, Magurudeniya, Harsha D, Rodriguez, Alberto, Chen, Yi-Chun, Pidatala, Venkataramana, Unda, Faride, Amer, Bashar, Baidoo, Edward EK, Mansfield, Shawn D, Simmons, Blake A, Singh, Seema, Scheller, Henrik V, Gladden, John M, and Eudes, Aymerick
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Biological Sciences ,Industrial Biotechnology ,Woody biomass ,Rhodosporidium toruloides ,Ionic liquid ,Saccharification ,Aromatics ,Fermentation ,Chemical Engineering ,Biochemistry and cell biology ,Industrial biotechnology - Abstract
BackgroundLignocellulosic resources are promising feedstocks for the manufacture of bio-based products and bioenergy. However, the inherent recalcitrance of biomass to conversion into simple sugars currently hinders the deployment of advanced bioproducts at large scale. Lignin is a primary contributor to biomass recalcitrance as it protects cell wall polysaccharides from degradation and can inhibit hydrolytic enzymes via non-productive adsorption. Several engineering strategies have been designed to reduce lignin or modify its monomeric composition. For example, expression of bacterial 3-dehydroshikimate dehydratase (QsuB) in poplar trees resulted in a reduction in lignin due to redirection of metabolic flux toward 3,4-dihydroxybenzoate at the expense of lignin. This reduction was accompanied with remarkable changes in the pools of aromatic compounds that accumulate in the biomass.ResultsThe impact of these modifications on downstream biomass deconstruction and conversion into advanced bioproducts was evaluated in the current study. Using ionic liquid pretreatment followed by enzymatic saccharification, biomass from engineered trees released more glucose and xylose compared to wild-type control trees under optimum conditions. Fermentation of the resulting hydrolysates using Rhodosporidium toruloides strains engineered to produce α-bisabolene, epi-isozizaene, and fatty alcohols showed no negative impact on cell growth and yielded higher titers of bioproducts (as much as + 58%) in the case of QsuB transgenics trees.ConclusionOur data show that low-recalcitrant poplar biomass obtained with the QsuB technology has the potential to improve the production of advanced bioproducts.
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- 2022
183. Identification of Putative Markers of Non-infectious Bud Failure in Almond [Prunus dulcis (Mill.) D.A. Webb] Through Genome Wide DNA Methylation Profiling and Gene Expression Analysis in an Almond × Peach Hybrid Population
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D’Amico-Willman, Katherine M, Sideli, Gina M, Allen, Brian J, Anderson, Elizabeth S, Gradziel, Thomas M, and Fresnedo-Ramírez, Jonathan
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Agricultural ,Veterinary and Food Sciences ,Biological Sciences ,Genetics ,Human Genome ,Aetiology ,2.1 Biological and endogenous factors ,Good Health and Well Being ,DNA methylation ,non-infectious bud failure ,differentially methylated regions ,Prunus interspecific hybrids ,quantitative RT-PCR ,methylome ,Plant Biology ,Crop and pasture production ,Plant biology - Abstract
Almond [Prunus dulcis (Mill.) D.A. Webb] is an economically important nut crop susceptible to the genetic disorder, Non-infectious Bud Failure (NBF). Despite the severity of exhibition in several prominent almond cultivars, no causal mechanism has been identified underlying NBF development. The disorder is hypothesized to be associated with differential DNA methylation patterns based on patterns of inheritance (i.e., via sexual reproduction and clonal propagation) and previous work profiling methylation in affected trees. Peach (Prunus persica L. Batsch) is a closely related species that readily hybridizes with almond; however, peach is not known to exhibit NBF. A cross between an NBF-exhibiting 'Carmel' cultivar and early flowering peach ('40A17') produced an F1 where ∼50% of progeny showed signs of NBF, including canopy die-back, erratic branching patterns (known as "crazy-top"), and rough bark. In this study, whole-genome DNA methylation profiles were generated for three F1 progenies exhibiting NBF and three progenies considered NBF-free. Subsequent alignment to both the almond and peach reference genomes showed an increase in genome-wide methylation levels in NBF hybrids in CG and CHG contexts compared to no-NBF hybrids when aligned to the almond genome but no difference in methylation levels when aligned to the peach genome. Significantly differentially methylated regions (DMRs) were identified by comparing methylation levels across the genome between NBF- and no-NBF hybrids in each methylation context. In total, 115,635 DMRs were identified based on alignment to the almond reference genome, and 126,800 DMRs were identified based on alignment to the peach reference genome. Nearby genes were identified as associated with the 39 most significant DMRs occurring either in the almond or peach alignments alone or occurring in both the almond and peach alignments. These DMR-associated genes include several uncharacterized proteins and transposable elements. Quantitative PCR was also performed to analyze the gene expression patterns of these identified gene targets to determine patterns of differential expression associated with differential DNA methylation. These DMR-associated genes, particularly those showing corresponding patterns of differential gene expression, represent key targets for almond breeding for future cultivars and mitigating the effects of NBF-exhibition in currently affected cultivars.
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- 2022
184. Detecting molecular interactions in live-cell single-molecule imaging with proximity-assisted photoactivation (PAPA)
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Graham, Thomas GW, Ferrie, John Joseph, Dailey, Gina M, Tjian, Robert, and Darzacq, Xavier
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Biochemistry and Cell Biology ,Biological Sciences ,Biotechnology ,Generic health relevance ,Chromatin ,Fluorescence Resonance Energy Transfer ,Fluorescent Dyes ,Receptors ,Androgen ,Rhodamines ,Single Molecule Imaging ,single-molecule fluorescence ,single-particle tracking ,protein-protein interactions ,live-cell imaging ,fluorophore photoactivation ,Human ,cell biology ,human ,molecular biophysics ,protein–protein interactions ,structural biology ,Biological sciences ,Biomedical and clinical sciences ,Health sciences - Abstract
Single-molecule imaging provides a powerful way to study biochemical processes in live cells, yet it remains challenging to track single molecules while simultaneously detecting their interactions. Here, we describe a novel property of rhodamine dyes, proximity-assisted photoactivation (PAPA), in which one fluorophore (the 'sender') can reactivate a second fluorophore (the 'receiver') from a dark state. PAPA requires proximity between the two fluorophores, yet it operates at a longer average intermolecular distance than Förster resonance energy transfer (FRET). We show that PAPA can be used in live cells both to detect protein-protein interactions and to highlight a subpopulation of labeled protein complexes in which two different labels are in proximity. In proof-of-concept experiments, PAPA detected the expected correlation between androgen receptor self-association and chromatin binding at the single-cell level. These results establish a new way in which a photophysical property of fluorophores can be harnessed to study molecular interactions in single-molecule imaging of live cells.
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- 2022
185. Notes from the Field: Harmful Algal Bloom Affecting Private Drinking Water Intakes — Clear Lake, California, June–November 2021
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Solomon, Gina M, Stanton, Beckye, Ryan, Sarah, Little, Amy, Carpenter, Catherine, and Paulukonis, Susan
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California ,Drinking Water ,Environmental Monitoring ,Harmful Algal Bloom ,Humans ,Lakes ,General & Internal Medicine - Published
- 2022
186. Genetic Loci Associated With COVID-19 Positivity and Hospitalization in White, Black, and Hispanic Veterans of the VA Million Veteran Program
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Peloso, Gina M, Tcheandjieu, Catherine, McGeary, John E, Posner, Daniel C, Ho, Yuk-Lam, Zhou, Jin J, Hilliard, Austin T, Joseph, Jacob, O’Donnell, Christopher J, Efird, Jimmy T, Crawford, Dana C, Wu, Wen-Chih, Arjomandi, Mehrdad, Sun, Yan V, Assimes, Themistocles L, and Huffman, Jennifer E
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Biological Sciences ,Genetics ,Coronaviruses Disparities and At-Risk Populations ,Emerging Infectious Diseases ,Human Genome ,Coronaviruses ,Infectious Diseases ,2.1 Biological and endogenous factors ,Good Health and Well Being ,COVID-19 ,genome-wide association study ,million veteran program ,hospitalization ,ABO ,VA Million Veteran Program COVID-19 Science Initiative ,Clinical Sciences ,Law - Abstract
SARS-CoV-2 has caused symptomatic COVID-19 and widespread death across the globe. We sought to determine genetic variants contributing to COVID-19 susceptibility and hospitalization in a large biobank linked to a national United States health system. We identified 19,168 (3.7%) lab-confirmed COVID-19 cases among Million Veteran Program participants between March 1, 2020, and February 2, 2021, including 11,778 Whites, 4,893 Blacks, and 2,497 Hispanics. A multi-population genome-wide association study (GWAS) for COVID-19 outcomes identified four independent genetic variants (rs8176719, rs73062389, rs60870724, and rs73910904) contributing to COVID-19 positivity, including one novel locus found exclusively among Hispanics. We replicated eight of nine previously reported genetic associations at an alpha of 0.05 in at least one population-specific or the multi-population meta-analysis for one of the four MVP COVID-19 outcomes. We used rs8176719 and three additional variants to accurately infer ABO blood types. We found that A, AB, and B blood types were associated with testing positive for COVID-19 compared with O blood type with the highest risk for the A blood group. We did not observe any genome-wide significant associations for COVID-19 severity outcomes among those testing positive. Our study replicates prior GWAS findings associated with testing positive for COVID-19 among mostly White samples and extends findings at three loci to Black and Hispanic individuals. We also report a new locus among Hispanics requiring further investigation. These findings may aid in the identification of novel therapeutic agents to decrease the morbidity and mortality of COVID-19 across all major ancestral populations.
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- 2022
187. Detection of COVID-19 using multimodal data from a wearable device: results from the first TemPredict Study
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Mason, Ashley E, Hecht, Frederick M, Davis, Shakti K, Natale, Joseph L, Hartogensis, Wendy, Damaso, Natalie, Claypool, Kajal T, Dilchert, Stephan, Dasgupta, Subhasis, Purawat, Shweta, Viswanath, Varun K, Klein, Amit, Chowdhary, Anoushka, Fisher, Sarah M, Anglo, Claudine, Puldon, Karena Y, Veasna, Danou, Prather, Jenifer G, Pandya, Leena S, Fox, Lindsey M, Busch, Michael, Giordano, Casey, Mercado, Brittany K, Song, Jining, Jaimes, Rafael, Baum, Brian S, Telfer, Brian A, Philipson, Casandra W, Collins, Paula P, Rao, Adam A, Wang, Edward J, Bandi, Rachel H, Choe, Bianca J, Epel, Elissa S, Epstein, Stephen K, Krasnoff, Joanne B, Lee, Marco B, Lee, Shi-Wen, Lopez, Gina M, Mehta, Arpan, Melville, Laura D, Moon, Tiffany S, Mujica-Parodi, Lilianne R, Noel, Kimberly M, Orosco, Michael A, Rideout, Jesse M, Robishaw, Janet D, Rodriguez, Robert M, Shah, Kaushal H, Siegal, Jonathan H, Gupta, Amarnath, Altintas, Ilkay, and Smarr, Benjamin L
- Subjects
Prevention ,Clinical Research ,Good Health and Well Being ,Adolescent ,Adult ,Aged ,Aged ,80 and over ,Algorithms ,Body Temperature ,COVID-19 ,Female ,Humans ,Male ,Middle Aged ,SARS-CoV-2 ,Wearable Electronic Devices ,Young Adult - Abstract
Early detection of diseases such as COVID-19 could be a critical tool in reducing disease transmission by helping individuals recognize when they should self-isolate, seek testing, and obtain early medical intervention. Consumer wearable devices that continuously measure physiological metrics hold promise as tools for early illness detection. We gathered daily questionnaire data and physiological data using a consumer wearable (Oura Ring) from 63,153 participants, of whom 704 self-reported possible COVID-19 disease. We selected 73 of these 704 participants with reliable confirmation of COVID-19 by PCR testing and high-quality physiological data for algorithm training to identify onset of COVID-19 using machine learning classification. The algorithm identified COVID-19 an average of 2.75 days before participants sought diagnostic testing with a sensitivity of 82% and specificity of 63%. The receiving operating characteristic (ROC) area under the curve (AUC) was 0.819 (95% CI [0.809, 0.830]). Including continuous temperature yielded an AUC 4.9% higher than without this feature. For further validation, we obtained SARS CoV-2 antibody in a subset of participants and identified 10 additional participants who self-reported COVID-19 disease with antibody confirmation. The algorithm had an overall ROC AUC of 0.819 (95% CI [0.809, 0.830]), with a sensitivity of 90% and specificity of 80% in these additional participants. Finally, we observed substantial variation in accuracy based on age and biological sex. Findings highlight the importance of including temperature assessment, using continuous physiological features for alignment, and including diverse populations in algorithm development to optimize accuracy in COVID-19 detection from wearables.
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- 2022
188. Examining Educational Leadership Dispositions: A Valid and Reliable Assessment of Leadership Dispositions
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Wilson, Adrianne, Almerico, Gina M., Johnston, Pattie, and Ensmann, Suzanne
- Abstract
Through a thorough review of research related to effective dispositional behaviors of educational leaders and with extensive input from subject matter experts, this research highlights twenty actionable behaviors associated with successful leadership in K-12 educational settings. The leadership dispositional behaviors identified in this study are indicative of promoting positive student outcomes, supporting the professional development of teachers, and creating positive work conditions for faculty and staff. The identification of leadership dispositions leading to performance-based growth and development in the discipline highlighted the need to address how postsecondary institutions can better prepare educational leadership candidates using sound measures. Adding to the body of educational leadership research, the Educational Leadership Disposition Assessment tool (EDLDA) was developed in this study using a systematic analysis of dispositional performance expectations in the discipline. The methodology for this research includes an extensive summary of steps taken to develop the EDLDA. Additionally, the psychometric evaluation of validated dispositional behaviors with calculated reliability estimates is presented in this research. Lastly, evidence of construct validity is also provided by aligning the validated dispositions with quality standards of the profession.
- Published
- 2020
189. Student Clickstream Data: Does Time of Day Matter?
- Author
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Ricker, Gina M., Koziarski, Mathew, and Walters, Alyssa M.
- Abstract
The relationship between student activity data and performance in the online classroom is well-documented, yet the parameters of this relationship and their implications for K-12 online schools are not yet well understood. This study examined the role of student chronotype (defined here as the time of day a student is most active in an online course) and overall activity level on course performance. Clickstream data captured by a Learning Management System from 414 students enrolled in an eleventh-grade English course in the fall of 2018 at two Midwestern full-time K-12 virtual schools were used to determine chronotype and activity level. Students were classified as one of four possible chronotypes given the mode of their click activity. Results of an ANCOVA showed that students who were most active in the morning significantly outperformed students who were most active in the afternoon and evening. Morning students also tended to be the most active overall. The results of a hierarchical regression revealed that, while chronotype was related to student performance, total student activity had an even greater impact on performance suggesting an interesting interplay between the two factors.
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- 2020
190. ICT Literacy and School Performance
- Author
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Santos, Gina M. M. C., Ramos, Eleusina M. C. P. S. L., Escola, Joaquim, and Reis, Manuel J. C. S.
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There is no doubt that Information and Communication Technologies (ICT) are now an integral part of the life of children and young people. Some of the recent literature studies on literacy in ICT show that this should incorporate Internet literacy, Computer literacy and Information literacy, and being these three forms of literacy indispensable in many aspects of human life in the 21st century. To determine the relationships between these three dimensions of literacy in ICT, the importance of parental and teachers support and use of the Internet as a pedagogical tool, as well as the influence of these factors on school performance and assess how they relate to explain, in general, why ICT literacy influences school performance, structural equation models have been used. The results show that ICT literacy is undoubtedly a factor in school performance of students of the 3rd cycle of basic education and secondary education (7th to 12th grades) in the district of Vila Real, Portugal. It was further found that the use of the Internet as a pedagogical tool is a major factor in school performance, and that parental and teacher support has a positive influence on ICT literacy.
- Published
- 2019
191. The mitochondrial multi-omic response to exercise training across rat tissues
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Adkins, Joshua N., Armenteros, Jose Juan Almagro, Amper, Mary Anne S., Bae, Dam, Bamman, Marcas, Bararpour, Nasim, Barnes, Jerry, Bergman, Bryan C., Bessesen, Daniel H., Broskey, Nicholas T., Buford, Thomas W., Carr, Steven, Chambers, Toby L., Chavez, Clarisa, Chiu, Roxanne, Clark, Natalie, Cutter, Gary, Evans, Charles R., Franczak, Edziu, Gagne, Nicole, Ge, Yongchao, Hennig, Krista M., Houmard, Joseph A., Huffman, Kim M., Hung, Chia-Jui, Hutchinson-Bunch, Chelsea, Ilkayeva, Olga, Jackson, Bailey E., Jankowski, Catherine M., Jin, Christopher A., Johannsen, Neil M., Katz, Daniel H., Keshishian, Hasmik, Kohrt, Wendy M., Kramer, Kyle S., Kraus, William E., Lester, Bridget, Li, Jun Z., Lira, Ana K., Lowe, Adam, Mani, D.R., Many, Gina M., May, Sandy, Melanson, Edward L., Moore, Samuel G., Moreau, Kerrie L., Musi, Nicolas, Nachun, Daniel, Nair, Venugopalan D., Newgard, Christopher, Nudelman, German, Piehowski, Paul D., Pincas, Hanna, Qian, Wei-Jun, Rankinen, Tuomo, Rasmussen, Blake B., Ravussin, Eric, Rooney, Jessica L., Rushing, Scott, Samdarshi, Mihir, Sanford, James A., Schauer, Irene E., Sealfon, Stuart C., Smith, Kevin S., Smith, Gregory R., Snyder, Michael, Stowe, Cynthia L., Talton, Jennifer W., Teng, Christopher, Thalacker-Mercer, Anna, Tracy, Russell, Trappe, Scott, Trappe, Todd A., Vasoya, Mital, Vetr, Nikolai G., Volpi, Elena, Walkup, Michael P., Wiel, Laurens, Wu, Si, Yan, Zhen, Yu, Jiye, Zaslavsky, Elena, Zebarjadi, Navid, Zhen, Jimmy, Amar, David, Gay, Nicole R., Jimenez-Morales, David, Jean Beltran, Pierre M., Ramaker, Megan E., Raja, Archana Natarajan, Zhao, Bingqing, Sun, Yifei, Marwaha, Shruti, Gaul, David A., Hershman, Steven G., Ferrasse, Alexis, Xia, Ashley, Lanza, Ian, Fernández, Facundo M., Montgomery, Stephen B., Hevener, Andrea L., Ashley, Euan A., Walsh, Martin J., Sparks, Lauren M., Burant, Charles F., Rector, R. Scott, Thyfault, John, Wheeler, Matthew T., Goodpaster, Bret H., Coen, Paul M., Schenk, Simon, Bodine, Sue C., and Lindholm, Malene E.
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- 2024
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192. Fuel property evaluation of unique fatty acid methyl esters containing β-hydroxy esters from engineered microorganisms
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McCormick, Robert L., Fioroni, Gina M., Mohamed, Samah Y., Naser, Nimal, Alleman, Teresa L., Kim, Seonah, Wang, Ziyu, Lin, Ying, Ju, Yiguang, and Kar, Kenneth
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- 2024
- Full Text
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193. A Comparative Review of Oral Board Delivery Across Procedural Disciplines
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Schoenfeld, Daniel, Lemack, Gary E., and Badalato, Gina M.
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- 2024
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194. Pediatric Gender Care in Primary Care Settings in West Virginia: Provider Knowledge, Attitudes, and Educational Experiences
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Kidd, Kacie M., Slekar, Alana, Sequeira, Gina M., Kahn, Nicole F., Costello, Lisa M., Negrin, Isabela, Farjo, Sara, Lusk, Savannah, Huzurbazar, Snehalata, and Narumanchi, Janani
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- 2024
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195. Parents of Gender Diverse Youth: Support Sought, Received, and Still Needed
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Kidd, Kacie M., Didden, El, Harman, Hayley, Sequeira, Gina M., Faeder, Morgan, Inwards-Breland, David J., Voss, Raina V., and Katz-Wise, Sabra L.
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- 2024
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196. Phase 1b study of mirvetuximab soravtansine, a folate receptor alpha (FRα)–targeting antibody-drug conjugate, in combination with carboplatin and bevacizumab in patients with platinum-sensitive ovarian cancer
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Richardson, Debra L., Moore, Kathleen N., Vergote, Ignace, Gilbert, Lucy, Martin, Lainie P., Mantia-Smaldone, Gina M., Castro, Cesar M., Provencher, Diane, Matulonis, Ursula A., Stec, James, Wang, Yuemei, Method, Michael, and O'Malley, David M.
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- 2024
- Full Text
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197. An Analysis of American Urological Association Census Trends: Earlier Planned Retirement and Practice Pattern Changes May Exacerbate the Urology Workforce Shortage
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Pellegrino, Christopher, Koo, Kevin, North, Amanda C., Badalato, Gina M., Badlani, Gopal, Fang, Raymond, Helsel, Alexis, Meeks, William, and Chien, Gary W.
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- 2024
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198. Resident Remediation: A National Survey of Urology Program Directors
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Han, David S., Badalato, Gina M., Murano, Tiffany E., and Anderson, Christopher B.
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- 2024
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199. Hospital Policy Variation in Addressing Decisions to Withhold and Withdraw Life-Sustaining Treatment
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Piscitello, Gina M., Lyons, Patrick G., Koch, Valerie Gutmann, Parker, William F., and Huber, Michael T.
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- 2024
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200. Perceived importance of weight loss and exercise among endometrial cancer survivors with overweight or obesity: Implications for lifestyle modification interventions
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Erin K. Tagai, Gina M. Mantia‐Smaldone, Andrew Belfiglio, Christina S. Chu, Emmanuel Lapitan, Heather Santos, Enrique Hernandez, David B. Sarwer, and Suzanne M. Miller
- Subjects
diet ,endometrial cancer ,exercise ,weight loss ,Internal medicine ,RC31-1245 - Abstract
Abstract Objective Type 1 endometrial cancer (EC) survivors who are overweight or obese are at increased risk of comorbidities and reduced quality of life. Lifestyle modification interventions (e.g., healthy eating, exercise) may help these women reduce excess weight and improve their quality of life. However, existing interventions have shown limited success. Guided by Self‐Determination Theory, the proposed study sought to identify factors associated with perceived importance of weight loss and exercise as well as interest in lifestyle modification interventions (components of extrinsic and intrinsic motivation) among EC survivors with overweight or obesity to inform future intervention development. Methods One hundred type 1 EC survivors [body mass index (BMI) ≥ 25 kg/m2] completed a cross‐sectional survey assessing sociodemographics, medical factors, exercise, risk perceptions and provider communication, quality of life, barriers to dieting and exercise, perceived importance of healthy lifestyles, and desired intervention content. Results EC survivors who were aware obesity is a risk factor for EC were significantly more likely to perceive weight loss as important and were interested in weight loss programs and receiving information about exercise (ps
- Published
- 2023
- Full Text
- View/download PDF
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