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Studies in community genetics have often revealed a relationship between genetic diversity of the focal species and species diversity of the associated biotic communities. This relationship was studied in forest communities dominated by black alder (Alnus glutinosa Gaertn.), one of the few tree species tolerating an anoxic environment of waterlogged soils. It is a dominant species of tree overstory in two types of communities: alder carrs, forest swamps with stagnating water, and riparian forests occurring along smaller waterflows, periodically flooded with a considerable water level fluctuation during the vegetation period. Plant community composition and genetic variation of alder populations were studied in 218 black alder communities of both types distributed along a broad latitudinal transect from the Pannonian lowland to the Western Carpathians (Hungary, Slovakia, Poland). Species diversity was significantly higher in riparian stands than in alder carrs, while no difference was observed in the genetic diversity. The analysis of population structure revealed differentiation between Pannonian and Carpathian populations, which may be attributed to different migration pathways during the Holocene. No correlation was observed between genetic diversity of alder and species diversity of the associated vascular plant communities. On the other hand, using the ddRAD-sequencing approach applied to 96 trees, we identified 19 single-nucleotide polymorphisms significantly associated with climatic and soil variables. However, the hypothesized bioindication function of the plant community composition on the genetic variation of black alder as a focal species was not confirmed. [Display omitted] • Alnus glutinosa forests are specific communities of waterlogged soils – swamps and riparian sites. • There is no link between species diversity of plant community and genetic diversity of the tree layer in alder forests. • Plant species diversity but not tree genetic variation differ between swamps and riparian forests. • Climate, soil and watershed properties determine variation at specific DNA polymorphic sites. [ABSTRACT FROM AUTHOR]

Background and Aims Diversity of the genus Sorbus has been affected by interspecific hybridizations. Pinkflowered hybrid species have been insufficiently studied so far. They comprise bigenomic hybrid species derived from crosses S. aria s.l. × S. chamaemespilus and trigenomic ones, where S. aucuparia was involved as well. The main objective of the present study was to reconstruct their hybrid origins as well as to assess genetic distinction among several morphologically recognized hybrid species. Methods Samples from putative maternal species and eight pink-flowered and two white-flowered hybrid species were collected in the Western Carpathians and the Sudetes. In total, 370 specimens were analysed. Six chloroplast microsatellites were used to infer parentage, whereas nuclear amplified fragment length polymorphism (AFLP) markers were employed for the identification of clones and patterns of genetic variation. Ploidy levels were estimated by flow cytometry on a subset of 140 individuals. Key Results Genetic data supported their hybrid origins proposed based on flower and leaf morphology, and chloroplast DNA (cpDNA) revealed recurrent origins (S. caeruleomontana, S. haljamovae), even from bidirectional hybridization events (S. zuzanae). All bigenomic and trigenomic hybrid species (except triploid S. zuzanae) were found to be tetraploid. In addition to polyploidy, low genetic variation and the presence of clones within and among populations were observed, suggesting predominantly apomictic reproduction of the hybrid species. Most of the described hybrid species appeared also genetically distinct. Conclusions The data suggest that multiple hybridization events in the Western Carpathian Sorbus have led to the formation of separate, partially reproductively isolated genetic lineages, which may or may not be discriminated morphologically. Even bidirectional hybridization can produce individuals classified to the same taxon based on phenotype. For some hybrid taxa, hybridization pathways were proposed based on their genetic proximity to parental species and differences in genome sizes. [ABSTRACT FROM AUTHOR]

Two provenance experiments with Norway spruce in Slovakia were used to reveal trends in the behaviour of provenances after their transfer. Regressions between the average height and survival of provenances and the differences between the geographic and selected climatic characteristics of the place of origin and provenance plots were significant for most of the characteristics tested. Data from the experiment with Polish and Slovak provenances from 1972 indicated that transfer into warmer regions with a longer vegetation period results in improved height growth and survival, with the exception of survival at initial stages. The experiment from 1964 with a broader altitudinal range of provenance plots, but with unadjusted latest measurements at individual plots available, revealed the best height growth of Slovak Norway spruce provenances after their transfer to sites with the mean annual temperature approximately 1°C higher and with the vegetation period 12 days longer than at places of origin. Transfer into lower altitudes, a warmer climate and a longer vegetation period improved survival. In both experiments, transfer to areas with increased rainfall had a negative effect on growth, which is probably associated with the fact that provenances are not able to exploit additional precipitation for the growth in areas with a colder climate and a shorter vegetation period. [ABSTRACT FROM AUTHOR]

• Here, palaeobotanical and genetic data for common beech ( Fagus sylvatica) in Europe are used to evaluate the genetic consequences of long-term survival in refuge areas and postglacial spread. • Four large datasets are presented, including over 400 fossil-pollen sites, 80 plant-macrofossil sites, and 450 and 600 modern beech populations for chloroplast and nuclear markers, respectively. • The largely complementary palaeobotanical and genetic data indicate that: (i) beech survived the last glacial period in multiple refuge areas; (ii) the central European refugia were separated from the Mediterranean refugia; (iii) the Mediterranean refuges did not contribute to the colonization of central and northern Europe; (iv) some populations expanded considerably during the postglacial period, while others experienced only a limited expansion; (v) the mountain chains were not geographical barriers for beech but rather facilitated its diffusion; and (vi) the modern genetic diversity was shaped over multiple glacial–interglacial cycles. • This scenario differs from many recent treatments of tree phylogeography in Europe that largely focus on the last ice age and the postglacial period to interpret genetic structure and argue that the southern peninsulas (Iberian, Italian and Balkan) were the main source areas for trees in central and northern Europe. [ABSTRACT FROM AUTHOR]

Local adaptation is key for ecotypic differentiation and species evolution. Understanding underlying genomic patterns can allow the prediction of future maladaptation and ecosystem stability. Here, we report the whole-genome resequencing of 874 individuals from 100 range-wide populations of European beech (Fagus sylvatica L.), an important forest tree species in Europe. We show that genetic variation closely mirrors geography with a clear pattern of isolation-by-distance. Genome-wide analyses for genotype-environment associations (GEAs) identify relatively few potentially adaptive variants after correcting for an overwhelming signal of statistically significant but non-causal GEAs. We characterize the single high confidence genomic region and pinpoint a candidate gene possibly involved in winter temperature adaptation via modulation of spring phenology. Surprisingly, allelic variation at this locus does not result in any apparent fitness differences in a common garden. More generally, reciprocal transplant experiments across large climate distances suggest extensive phenotypic plasticity. Nevertheless, we find indications of polygenic adaptation which may be essential in natural ecosystems. This polygenic signal exhibits broad- and fine-scale variation across the landscape, highlighting the relevance of spatial resolution. In summary, our results emphasize the importance, but also exemplify the complexity, of employing natural genetic variation for forest conservation under climate change., (© 2024. The Author(s).)

This review summarizes the development of population genetics and population genomics studies of forest trees in Slovakia during the past 40 years. Various protein and DNA markers have been applied during this period to address several topics in evolutionary genetics and biogeography of trees: allozymes, uniparentally inherited chloroplast and mitochondrial markers, simple sequence repeats and single nucleotide polymorphisms. The main object of studies of phylogeny and postglacial migration were Fagus sylvatica s.l . and eastern-Mediterranean firs ( Abies Mill. section Abies ), where the divergence of genetic lineages (species and subspecific taxa) in time, as well as colonization of the current ranges during the Holocene were reconstructed. The studies on intraspecific gene flow and homoploid hybridization focused on hybrid swarms Pinus sylvestris/P. mugo and firs. Unusual maternal inheritance of chloroplast DNA was revealed in P. mugo × P. sylvestris crosses. Contrasting geographical structures of hybrid zones were revealed in wind-dispersed vs. animal-dispersed trees. Within the studies of adaptation, signals of selection were identified both in field observations and common-garden experiments on Picea abies, F. sylvatica and A. alba . Perspectives of ongoing research employing next-generation sequencing were shortly outlined., Competing Interests: Conflicts of interest/competing interestsThe authors do not perceive any conflict of interests., (© Slovak Academy of Sciences 2021.)