259 results on '"Fazi S."'
Search Results
152. Petroclival meningioma mimicking the presentation of a transient ischemic attack
- Author
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Fazi, S., primary and Barthelemy, M., additional
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- 2009
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153. Variazione dei tassi di decomposizione del detrito vegetale e delle caratteristiche trofiche della comunita’ detritivora lungo un gradiente di urbanizzazione (Fiume Tevere- Roma-)
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Fazi, S., Solimini, A. G., Tarallo, G. A., and Rossi, Loreto
- Published
- 1992
154. Ecological study at two levels of hierarchical organization of detritus system
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Rossi, Loreto, Costantini, Maria Letizia, and Fazi, S.
- Published
- 1992
155. Modificazioni strutturali di reti alimentari a base detrito in presenza di Cyprinus carpio
- Author
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Fazi, S. and Rossi, Loreto
- Published
- 1991
156. Towards wise coastal management practice in a tropical megacity—Jakarta
- Author
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Nur, Y, primary, Fazi, S, additional, Wirjoatmodjo, N, additional, and Han, Q, additional
- Published
- 2001
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157. CAN THE ASSOCIATION OF CICLOSPORINE A AND METHOTREXATE MAINTAIN REMISSION/LOW DISEASE ACTIVITY INDUCED BY ETANERCEPT IN EARLY RHEUMATOID ARTHRITIS PATIENTS? EVALUATION BY MAGNETIC RESONANCE IMAGING.
- Author
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PICCHIANTI DIAMANTI, A., ARGENTO, G., PODESTÀ, E., GERMANO, V., FAZI, S., MIGLIORE, A., DAVID, V., D'AMELIO, R., and LAGANÀ, B.
- Published
- 2012
- Full Text
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158. Sediment microbial communities rely on different dissolved organic matter sources along a Mediterranean river continuum
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Freixa, A., Ejarque, E., Crognale, S., Amalfitano, S., Fazi, S., Butturini, A., and Romani, A. M.
- Subjects
Mediterranean rivers ,bactera - Abstract
Heterotrophic bacteria play a key role in the degradation of organic matter and carbon cycling in river sediments. These bacterial communities are directly influenced by environmental variables that differ spatially and temporally in rivers. Here, we studied the longitudinal patterns of sediment bacterial community composition and dissolved organic matter utilization under base flow and drought conditions in a Mediterranean river. Our results indicated that sediment microbial communities were affected by dissolved organic matter quality and origin along the river continuum. In headwaters the potential degradation of cellulose and hemicellulose was greater (i.e., higher beta-glucosidase and beta-xylosidase activities), suggesting higher microbial utilization of allochthonous detritus from terrestrial origin. Conversely, the accumulation and transport of more recalcitrant compounds (i.e., decrease in the recalcitrant index) became potentially relevant downstream. Furthermore, discharge fluctuations had clear effects on bacterial community composition and dissolved organic matter use. The hydrological fragmentation of the river continuum during drought period generated sediment microhabitats dominated by gamma and delta-Proteobacteria, with a greater potential capacity to degrade a wide range of compounds, particularly nitrogen containing moieties. During base flow conditions, we observed a higher occurrence of alpha-Proteobacteria and a greater potential use of more recalcitrant carbon compounds, mostly of terrestrial origin. Overall, our findings suggest an upstream-downstream longitudinal transition of sediment microbial communities that rely on allochthonous to autochthonous dissolved organic matter, and a shift toward autochthonous dissolved organic matter reliance during drought.
159. Etude des rythmes de base chez le sujet normal et pathologique par la cartographie EEG
- Author
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SAMSONDOLLFUS, D, primary, DELMER, C, additional, FAZI, S, additional, DREANO, E, additional, FODIL, D, additional, BLASQUEZ, R, additional, and TERRISSE, V, additional
- Published
- 1987
- Full Text
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160. Petroclival meningioma mimicking the presentation of a transient ischemic attack.
- Author
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Fazi, S. and Barthelemy, M.
- Published
- 1994
- Full Text
- View/download PDF
161. Sediment structural properties mediating dominant feeding types patterns in soft-bottom macrobenthos of the Northern Adriatic Sea
- Author
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Rossi, L., Mancinelli, G., and Fazi, S.
- Subjects
LIMNOLOGY ,MARINE biology ,SEDIMENTS - Abstract
In sediments sampled in Northern Adriatic Sea invertebrate benthic macrofauna was examined in comparison with both substratum bulk parameters (average grain size, sorting, total organic matter content) and attributes of grain size classes (specific organic matter content of dimensional fractions). The aims were: 1) to determine whether variations of community overall parameters (total spatial density, number of taxa) and in numerically dominant feeding types (deposit-feeders and suspension-feeders) patterns were related to changes in sediment general properties; 2) to evaluate whether the observed patterns of abundance for deposit- and filter-feeders had more valid correlates in specific properties of substratum dimensional fractions.Number of taxaand animal spatial density resulted conventionally related to substratum bulk parameters while feeding types patterns in comparison with sediment total organic matter content exhibited a reciprocal negativeeffect; only when both feeding types and sediment structure were resolved to their specific attributes in terms of prevalence of tubicolous taxa among deposit-feeders and organic matter richness of single dimensional fractions, the analysis emphasized patterns unequally affected by specific size fractions abundance and organic matter content:deposit feeders demonstrated to be related to the presence in the substrate of intermediate grain size classes necessary for tube-building. Those intermediate fractions proved to be more adequate descriptors than average grain size or other overall sediment parameters per seof relations actually established between feeding types and the complex nature of bottom sediments. Our results emphasize that in the Northern Adriatic Sea, sediment organic matter content may represent a factor of minor importance in comparison with other substrate attributes, for which it may be necessary a detailed analysis of sediment structure. Thus, we concluded that the complexity of soft-bottom communities [ABSTRACT FROM AUTHOR]
- Published
- 1998
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162. Size distribution of the amphipod Paramoera walkeri Stebbing along adepth gradient in Antarctica
- Author
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Rossi, L., Costantini, M. L., and Fazi, S.
- Subjects
MARINE biology - Published
- 1996
163. Anaerobic electrogenic oxidation of toluene in a continuous-flow bioelectrochemical reactor: Process performance, microbial community analysis, and biodegradation pathways
- Author
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Matteo Daghio, Anna Espinoza Tofalos, Andrea Franzetti, Federico Aulenta, Enza Palma, Marco Petrangeli Papini, Carolina Cruz Viggi, Stefano Fazi, Palma, E, Daghio, M, ESPINOZA TOFALOS, A, Franzetti, A, Cruz Viggi, C, Fazi, S, Petrangeli Papini, M, and Aulenta, F
- Subjects
Environmental Engineering ,biology ,Chemistry ,Benzylsuccinate ,In situ bioremediation ,Biodegradation ,biology.organism_classification ,Electrochemistry ,Toluene ,Bioelectric well ,Toluene oxidation ,Microbial Electrochemical System ,chemistry.chemical_compound ,Bioelectrochemical reactor ,bioremediation ,Environmental chemistry ,Anaerobic exercise ,Faraday efficiency ,Water Science and Technology ,Geobacter - Abstract
Microbial electrochemical systems (MES) represent an innovative reagent-free technology for in situ remediation of groundwater contaminated by petroleum hydrocarbons. Here we describe the long-term (>160 days) anaerobic treatment of synthetic groundwater containing toluene (25 mg L−1) in a novel laboratory-scale, continuous-flow bioelectrochemical reactor, termed the “bioelectric well”. Under optimal operating conditions (i.e., anode potential potentiostatically controlled at +0.2 V vs. SHE and recycle flow-rate set at 75 mL min−1), the observed electrogenic toluene oxidation rate was 67.2 ± 5.7 mg L d−1, a value which is among the highest reported in the literature for laboratory-scale anaerobic treatment systems. Correspondingly, electric current was 5.1 ± 0.1 mA and the Coulombic efficiency (i.e., the yield of toluene conversion into electric current) was 79 ± 7%. Electrogenic toluene oxidation was most likely catalyzed by Geobacter species, which were found to dominate the surface of the graphite anode. The combined application of GC-MS (for detection and identification of metabolites) and qPCR (for quantification of functional genes) revealed that toluene degradation was initiated by fumarate addition, an activation pathway that is widely distributed among anaerobic hydrocarbon-degrading microorganisms. Collectively, the results of this study indicate that the bioelectric well holds remarkable potential for in situ treatment of groundwater contaminated by petroleum hydrocarbons.
- Published
- 2018
164. DNAqua-Net: Developing new genetic tools for bioassessment and monitoring of aquatic ecosystems in Europe
- Author
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Jóhannes Guðbrandsson, Peter M. Hollingsworth, Berry van der Hoorn, Irma Vitonytė, Per Sundberg, Agnès Bouchez, Snaedis H. Bjornsdottir, Pavel Stoev, Lyubomir Penev, Vallo Mulk, Trude Vrålstad, Daniel Hering, Ana Rotter, Adam Petrusek, Mary Kelly-Quinn, Jeremy J. Piggott, Emre Keskin, Zuzana Ciamporova-Zatovicova, Martin Pfannkuchen, Astrid Schmidt-Kloiber, Matteo Montagna, Baruch Rinkevich, Martyn Kelly, Roman Wenne, Filipe O. Costa, Atle M. Bones, Diego Fontaneto, Marlen Vasquez Hadjilyra, Maja Mejdandzic, Sigitas Šulčius, Craig R. Primmer, Patricia Mergen, Wolfram Graf, Jan Pawlowski, Alice Valentini, Lieven Bervoets, Belma Kalamujić Stroil, Florian Leese, Costas S. Tsigenopoulos, Kristian Meissner, Frédéric Rimet, Zrinka Ljubešić, Torbjørn Ekrem, Arjen G. C. L. Speksnijder, Kristel Panksep, Marieta Costache, Maria Kahlert, Panagiotis Kasapidis, Bella Japoshvili, Zoltán Csabai, Alexander M. Weigand, Michael Grabowski, Kessy Abarenkov, Wolfgang Wägele, Kristy Deiner, Michael Traugott, Jonas Zimmermann, Jens Carlsson, Anne Winding, Yaron Hershkovitz, Gábor Várbíró, Bojana Zegura, Judit Padisák, Urmas Kõljalg, Florian Altermatt, Elvira Mächler, Jean-François Flot, John Jones, Micaela Hellström, Dirk Steinke, Andrew R. Mahon, Georgina Mircheva, Stina Drakare, Simon Creer, Alfried P. Vogler, Pedro Segurado, Ion Năvodaru, Ángel DelValls, Pedro Beja, Andreja Naumoski, Irena Maček, Marketa Marečková, Pierre Taberlet, J.R. Viguri, Stefano Fazi, Ángel Borja, Malin Strand, Eric Coissac, Guy Woodward, Vera G. Fonseca, Snæbjörn Pálsson, Tina Elersek, Angela Boggero, Cene Fišer, Xavier Turon, Christian Moritz, Fedor Čiampor, Vojislava Bursić, Kat Bruce, Pieter Boets, Sofia Alexandra Ferreira Duarte, European Commission, Leese, F., Altermatt, F., Bouchez, A., Ekrem, T., Hering, D., Meissner, K., Mergen, P., Pawlowski, J., Piggott, J. J., Rimet, F., Steinke, D., Taberlet, P., Weigand, A. M., Abarenkov, K., Beja, P., Bervoets, L., Björnsdóttir, S., Boets, P., Boggero, A., Magnar Bones, A., Borja, Á., Bruce, K., Bursić, V., Carlsson, J., Čiampor, F., Čiamporová-Zatovičová, Z., Coissac, E., Costa, F., Costache, M., Creer, S., Csabai, Z., Deiner, K., Delvalls, Á., Drakare, S., Duarte, S., Eleršek, T., Fazi, S., Fišer, C., Flot, J. F., Fonseca, V., Fontaneto, D., Grabowski, M., Graf, W., Guðbrandsson, J., Hershkovitz, Y., Hollingsworth, P., Japoshvili, B., Jones, J. I., Kahlert, M., Kalamujic Stroil, B., Kasapidis, P., Kelly, M. G., Kelly- Quinn, M., Keskin, E., Kõljalg, U., Ljubešić, Z., Maček, I., Mächler, E., Mahon, A., Marečková, M., Mejdandzic, M., Mircheva, G., Montagna, M., Moritz, C., Mulk, V., Naumoski, A., Navodaru, I., Padisák, J., Pálsson, S., Panksep, K., Penev, L., Petrusek, A., Pfannkuchen, M. A., Primmer, C. R., Rinkevich, B., Rotter, A., Schmidt-Kloiber, A., Segurado, P., Speksnijder, A., Stoev, P., Strand, M., Šulčius, S., Traugott, M., Tsigenopoulos, C., Turon, X., Valentini, A., van der Hoorn, B., Várbíró, G., Vasquez Hadjilyra, M. I., Viguri, J., Vitonytė, I., Vogler, A., Vrålstad, T., Wägele, W., Wenne, R., Winding, A., Woodward, G., Zegura, B., Zimmermann, J., [et al.], Universidad de Cantabria, and Universidade do Minho
- Subjects
DNAqua-Net ,genetic tools ,bioassessment ,monitoring ,0106 biological sciences ,0301 basic medicine ,Emerging technologies ,Ecology (disciplines) ,water ,Biodiversity ,dna ,Biology ,010603 evolutionary biology ,01 natural sciences ,Training (civil) ,Task (project management) ,taxonomy ,03 medical and health sciences ,14. Life underwater ,lcsh:Science ,Ecology ,business.industry ,Aquatic ecosystem ,Environmental resource management ,Environmental Sciences (social aspects to be 507) ,General Medicine ,Directive ,6. Clean water ,030104 developmental biology ,Conceptual framework ,Génétique, cytogénétique ,13. Climate action ,Systématique des espèces [zoologie] ,metabarcoding ,lcsh:Q ,business - Abstract
24 páginas, 2 figuras, 1 tabla., The protection, preservation and restoration of aquatic ecosystems and their functions are of global importance. For European states it became legally binding mainly through the EUWater Framework Directive (WFD). In order to assess the ecological status of a given water body, aquatic biodiversity data are obtained and compared to a reference water body. The quantified mismatch obtained determines the extent of potential management actions. The current approach to biodiversity assessment is based on morpho-taxonomy. This approach has many drawbacks such as being time consuming, limited in temporal and spatial resolution, and error-prone due to the varying individual taxonomic expertise of the analysts. Novel genomic tools can overcome many of the aforementioned problems and could complement or even replace traditional bioassessment. Yet, a plethora of approaches are independently developed in different institutions, thereby hampering any concerted routine application. The goal of this Action is to nucleate a group of researchers across disciplines with the task to identify gold-standard genomic tools and novel ecogenomic indices for routine application in biodiversity assessments of European fresh- and marine water bodies. Furthermore, DNAqua-Net will provide a platform for training of the next generation of European researchers preparing them for the new technologies. Jointly with water managers, politicians, and other stakeholders, the group will develop a conceptual framework for the standard application of eco-genomic tools as part of legally binding assessments.
- Published
- 2016
165. Structural properties and microbial diversity of the biofilm colonizing plastic substrates in Terra Nova Bay (Antarctica).
- Author
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Papale M, Fazi S, Severini M, Scarinci R, Dell'Acqua O, Azzaro M, Venuti V, Fazio B, Fazio E, Crupi V, Irrera A, Rizzo C, Giudice AL, and Caruso G
- Subjects
- Antarctic Regions, RNA, Ribosomal, 16S, Bacteria classification, Biofouling, Biofilms, Plastics, Bays microbiology, Microbiota
- Abstract
Microbial colonization on plastic polymers has been extensively explored, however the temporal dynamics of biofilm community in Antarctic environments are almost unknown. As a contribute to fill this knowledge gap, the structural characteristics and microbial diversity of the biofilm associated with polyvinyl chloride (PVC) and polyethylene (PE) panels submerged at 5 m of depth and collected after 3, 9 and 12 months were investigated in four coastal sites of the Ross Sea. Additional panels placed at 5 and 20 m were retrieved after 12 months. Chemical characterization was performed by FTIR-ATR and Raman (through Surface-Enhanced Raman Scattering, SERS) spectroscopy. Bacterial community composition was quantified at a single cell level by Catalyzed Reporter Deposition Fluorescence In Situ Hybridization (CARD-FISH) and Confocal Laser Scanning Microscopy (CLSM); microbial diversity was assessed by 16S rRNA gene sequencing. This multidisciplinary approach has provided new insights into microbial community dynamics during biofouling process, shedding light on the biofilm diversity and temporal succession on plastic substrates in the Ross Sea. Significant differences between free-living and microbial biofilm communities were found, with a more consolidated and structured community composition on PVC compared to PE. Spectral features ascribable to tyrosine, polysaccharides, nucleic acids and lipids characterized the PVC-associated biofilms. Pseudomonadota (among Gamma-proteobacteria) and Alpha-proteobacteria dominated the microbial biofilm community. Interestingly, in Road Bay, close to the Italian "Mario Zucchelli" research station, the biofilm growth - already observed during summer season, after 3 months of submersion - continued afterwards leading to a massive microbial abundance at the end of winter (after 12 months). After 3 months, higher percentages of Gamma-proteobacteria in Road Bay than in the not-impacted site were found. These observations lead us to hypothesize that in this site microbial fouling developed during the first 3 months could serve as a starter pioneering community stimulating the successive growth during winter., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper. This research article has not been submitted previously, it is not under consideration for publication elsewhere, its publication is approved by all authors and, if accepted, it will not be published elsewhere in the same form in English or in any other language, including electronically, without the written consent of the copyright-holder. No generative artificial intelligence (AI) and AI-assisted technologies were used in the writing process., (Copyright © 2024 The Authors. Published by Elsevier B.V. All rights reserved.)
- Published
- 2024
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166. Anaerobic treatment of groundwater co-contaminated by toluene and copper in a single chamber bioelectrochemical system.
- Author
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Resitano M, Tucci M, Mezzi A, Kaciulis S, Matturro B, D'Ugo E, Bertuccini L, Fazi S, Rossetti S, Aulenta F, and Cruz Viggi C
- Subjects
- Anaerobiosis, Biodegradation, Environmental, Electrochemical Techniques methods, Oxidation-Reduction, Biofilms, Water Purification methods, Bioelectric Energy Sources microbiology, Toluene chemistry, Toluene metabolism, Copper chemistry, Groundwater chemistry, Groundwater microbiology, Water Pollutants, Chemical metabolism, Electrodes
- Abstract
Addressing the simultaneous removal of multiple coexisting groundwater contaminants poses a significant challenge, primarily because of their different physicochemical properties. Indeed, different chemical compounds may necessitate establishing distinct, and sometimes conflicting, (bio)degradation and/or removal pathways. In this work, we investigated the concomitant anaerobic treatment of toluene and copper in a single-chamber bioelectrochemical cell with a potential difference of 1 V applied between the anode and the cathode. As a result, the electric current generated by the bioelectrocatalytic oxidation of toluene at the anode caused the abiotic reduction and precipitation of copper at the cathode, until the complete removal of both contaminants was achieved. Open circuit potential (OCP) experiments confirmed that the removal of copper and toluene was primarily associated with polarization. Analogously, abiotic experiments, at an applied potential of 1 V, confirmed that neither toluene was oxidized nor copper was reduced in the absence of microbial activity. At the end of each experiment, both electrodes were characterized by means of a comprehensive suite of chemical and microbiological analyses, evidencing a highly selected microbial community competent in the biodegradation of toluene in the anodic biofilm, and a uniform electrodeposition of spherical Cu
2 O nanoparticles over the cathode surface., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 The Author(s). Published by Elsevier B.V. All rights reserved.)- Published
- 2024
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167. Carbonate precipitation and phosphate trapping by microbialite isolates from an alkaline insular lake (Bagno dell'Acqua, Pantelleria Island, Italy).
- Author
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Mazzoni C, Piacentini A, Di Bella L, Aldega L, Perinelli C, Conte AM, Ingrassia M, Ruspandini T, Bonfanti A, Caraba B, Falese FG, Chiocci FL, and Fazi S
- Abstract
The Bagno dell'Acqua lake is characterized by CO
2 emissions, alkaline waters (pH = 9) and Eh values which indicate strongly oxidizing conditions. A typical feature of the lake is the presence of actively growing microbialites rich in calcium carbonates and silica precipitates. Mineralogy, petrography and morphology analyses of the microbialites were coupled with the analysis of the microbial community, combining molecular and cultivation approaches. The DNA sequencing revealed distinct patterns of microbial diversity, showing pronounced differences between emerged and submerged microbialite, with the upper layer of emerged samples exhibiting the most distinctive composition, both in terms of prokaryotes and eukaryotes. In particular, the most representative phyla in the microbial community were Proteobacteria, Actinobacteriota, and Bacteroidota, while Cyanobacteria were present only with an average of 5%, with the highest concentration in the submerged intermediate layer (12%). The role of microorganisms in carbonate mineral formation was clearly demonstrated as most of the isolates were able to precipitate calcium carbonate and five of them were characterized at molecular level. Interestingly, when microbial isolates were cultivated only in filtered water, the precipitation of hazenite was observed (up to 85%), opening new prospective in P (phosphate) recovery from P depleted environments., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2024 Mazzoni, Piacentini, Di Bella, Aldega, Perinelli, Conte, Ingrassia, Ruspandini, Bonfanti, Caraba, Falese, Chiocci and Fazi.)- Published
- 2024
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168. Overview and Challenges of Large-Scale Cultivation of Photosynthetic Microalgae and Cyanobacteria.
- Author
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Novoveská L, Nielsen SL, Eroldoğan OT, Haznedaroglu BZ, Rinkevich B, Fazi S, Robbens J, Vasquez M, and Einarsson H
- Subjects
- Automation, Biofilms, Food, Microalgae, Cyanobacteria
- Abstract
Microalgae and cyanobacteria are diverse groups of organisms with great potential to benefit societies across the world. These organisms are currently used in food, feed, pharmaceutical and cosmetic industries. In addition, a variety of novel compounds are being isolated. Commercial production of photosynthetic microalgae and cyanobacteria requires cultivation on a large scale with high throughput. However, scaling up production from lab-based systems to large-scale systems is a complex and potentially costly endeavor. In this review, we summarise all aspects of large-scale cultivation, including aims of cultivation, species selection, types of cultivation (ponds, photobioreactors, and biofilms), water and nutrient sources, temperature, light and mixing, monitoring, contamination, harvesting strategies, and potential environmental risks. Importantly, we also present practical recommendations and discuss challenges of profitable large-scale systems associated with economical design, effective operation and maintenance, automation, and shortage of experienced phycologists.
- Published
- 2023
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169. Interplay between abiotic and microbial biofilm-mediated processes for travertine formation: Insights from a thermal spring (Piscine Carletti, Viterbo, Italy).
- Author
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Venturi S, Crognale S, Di Benedetto F, Montegrossi G, Casentini B, Amalfitano S, Baroni T, Rossetti S, Tassi F, Capecchiacci F, Vaselli O, and Fazi S
- Subjects
- Allyl Compounds, Bacteria metabolism, Biofilms, Calcium Carbonate chemistry, Calcium Sulfate chemistry, Carbon Dioxide metabolism, Minerals metabolism, Sulfides, Sulfur metabolism, Hot Springs microbiology
- Abstract
Active hydrothermal travertine systems are ideal environments to investigate how abiotic and biotic processes affect mineralization mechanisms and mineral fabric formation. In this study, a biogeochemical characterization of waters, dissolved gases, and microbial mats was performed together with a mineralogical investigation on travertine encrustations occurring at the outflow channel of a thermal spring. The comprehensive model, compiled by means of TOUGHREACT computational tool from measured parameters, revealed that mineral phases were differently influenced by either abiotic conditions or microbially driven processes. Microbial mats are shaped by light availability and temperature gradient of waters flowing along the channel. Mineralogical features were homogeneous throughout the system, with euhedral calcite crystals, related to inorganic precipitation induced by CO
2 degassing, and calcite shrubs associated with organomineralization processes, thus indicating an indirect microbial participation to the mineral deposition (microbially influenced calcite). The microbial activity played a role in driving calcite redissolution processes, resulting in circular pits on calcite crystal surfaces possibly related to the metabolic activity of sulfur-oxidizing bacteria found at a high relative abundance within the biofilm community. Sulfur oxidation might also explain the occurrence of gypsum crystals embedded in microbial mats, since gypsum precipitation could be induced by a local increase in sulfate concentration mediated by S-oxidizing bacteria, regardless of the overall undersaturated environmental conditions. Moreover, the absence of gypsum dissolution suggested the capability of microbial biofilm in modulating the mobility of chemical species by providing a protective envelope on gypsum crystals., (© 2022 John Wiley & Sons Ltd.)- Published
- 2022
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170. Geochemical and microbiological profiles in hydrothermal extreme acidic environments (Pisciarelli Spring, Campi Flegrei, Italy).
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Crognale S, Venturi S, Tassi F, Rossetti S, Cabassi J, Capecchiacci F, Bicocchi G, Vaselli O, Morrison HG, Sogin ML, and Fazi S
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- Acids metabolism, Bacteria, Extreme Environments, Phylogeny, RNA, Ribosomal, 16S genetics, Archaea, Microbiota genetics
- Abstract
Although terrestrial hydrothermal systems are considered among the most fascinating environments, how their unique and extreme conditions can affect microorganisms selection and the role in biogeochemical cycles has not yet been well elucidated. A combined geochemical and microbiological exploration in waters and sediments from 10 sampling points along a sharp temperature gradient (15-90°C) within an extremely acidic hydrothermal system (Pisciarelli Spring, Campi Flegrei area, southern Italy) displayed how hydrothermal fluids influence the microbial dynamics. This area was characterized by high levels of reduced gaseous species (e.g. H2S, H2, CH4, CO) and very low pH values (<2.3). Thermodynamic calculations revealed a high microbial catabolic potential in oxidation/reduction reactions of N-, S- and Fe-bearing species. Overall, an increase of the archaeal/bacterial abundance ratio was observed by decreasing temperature and pH values. In particular, Archaea and Bacteria were present in almost equal cell abundance (up to 1.1 × 109 and 9.3 × 108 cell/g, respectively) in the <70°C sampling points (average pH = 2.09); on the contrary, the highest temperature waters (85-90°C; average pH = 2.26) were characterized by a low abundance of archaeal cells. The high-throughput sequencing of the 16S rRNA genes indicated strong differences in archaeal and bacterial communities composition along the temperature gradient. However, the microbiome in this extreme environment was mainly constituted by chemoautotrophic microorganisms that were likely involved in N-, S- and Fe-bearing species transformations (e.g. Acidianus infernus, Ferroplasma acidarmanus, Acidithiobacillus,Sulfobacillus,Thaumarchaeota), in agreement with thermodynamic calculations., (© The Author(s) 2022. Published by Oxford University Press on behalf of FEMS.)
- Published
- 2022
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171. Combined treatment with inhibitors of ErbB Receptors and Hh signaling pathways is more effective than single treatment in reducing the growth of malignant mesothelioma both in vitro and in vivo.
- Author
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Bei R, Benvenuto M, Focaccetti C, Fazi S, Moretti M, Nardozi D, Angiolini V, Ciuffa S, Cifaldi L, Carrano R, Palumbo C, Miele MT, Bei R, Barillari G, Manzari V, De Smaele E, Modesti A, and Masuelli L
- Subjects
- Animals, Cell Line, Tumor, Hedgehog Proteins, Humans, Mice, Signal Transduction, Zinc Finger Protein GLI1, ErbB Receptors metabolism, Mesothelioma, Malignant
- Abstract
Malignant mesothelioma (MM) is a rare orphan aggressive neoplasia with low survival rates. Among the other signaling pathways, ErbB receptors and Hh signaling are deregulated in MM. Thus, molecules involved in these signaling pathways could be used for targeted therapy approaches. The aim of this study was to evaluate the effects of inhibitors of Hh- (GANT-61) and ErbB receptors (Afatinib)-mediated signaling pathways, when used alone or in combination, on growth, cell cycle, cell death and autophagy, modulation of molecules involved in transduction pathways, in three human MM cell lines of different histotypes. The efficacy of the combined treatment was also evaluated in a murine epithelioid MM cell line both in vitro and in vivo. This study demonstrated that combined treatment with two inhibitors counteracting the activation of two different signaling pathways involved in neoplastic transformation and progression, such as those activated by ErbB and Hh signaling, is more effective than the single treatments in reducing MM growth in vitro and in vivo. This study may have clinical implications for the development of targeted therapy approaches for MM., (© 2022. The Author(s).)
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- 2022
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172. Polyphenols affect the humoral response in cancer, infectious and allergic diseases and autoimmunity by modulating the activity of T H 1 and T H 2 cells.
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Benvenuto M, Focaccetti C, Ciuffa S, Fazi S, Bei A, Miele MT, Albonici L, Cifaldi L, Masuelli L, and Bei R
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- Cytokines, Humans, Th1 Cells immunology, Th2 Cells immunology, Autoimmune Diseases immunology, Hypersensitivity immunology, Infections immunology, Neoplasms immunology, Polyphenols pharmacology
- Abstract
Polyphenols are a wide class of natural substances, pleiotropic molecules capable of modulating several processes, involved in the humoral and cellular immune response. The activation, differentiation of B cells, and production of antibodies to protein antigens by plasma cells depend on T helper (T
H ) CD4+ cells and secreted cytokines. Cancer, infectious, allergic, and autoimmune diseases are characterized by an imbalance of TH 1/TH 2 immunity and abnormal activation of the humoral response. Accordingly, polyphenols modulate the TH 1/TH 2 ratio, the secretion of multiple cytokines, the levels of antibodies, and therefore could contribute to recovering the state of health in these diseases. In this review, we summarize the current knowledge on the effects of polyphenols in modulating the humoral response in cancer, infectious and allergic diseases and in autoimmunity by affecting the activity of TH 1 and TH 2 cells., (Copyright © 2021 Elsevier Ltd. All rights reserved.)- Published
- 2021
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173. Proteasome inhibition by bortezomib parallels a reduction in head and neck cancer cells growth, and an increase in tumor-infiltrating immune cells.
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Benvenuto M, Ciuffa S, Focaccetti C, Sbardella D, Fazi S, Scimeca M, Tundo GR, Barillari G, Segni M, Bonanno E, Manzari V, Modesti A, Masuelli L, Coletta M, and Bei R
- Subjects
- Animals, Apoptosis drug effects, Cell Cycle drug effects, Humans, Male, Mice, Mice, Transgenic, Tumor Microenvironment drug effects, Antineoplastic Agents pharmacology, Bortezomib pharmacology, Cell Proliferation drug effects, Head and Neck Neoplasms pathology, Lymphocytes, Tumor-Infiltrating pathology, Protease Inhibitors pharmacology, Proteasome Endopeptidase Complex drug effects
- Abstract
Head and neck cancer (HNC) has frequently an aggressive course for the development of resistance to standard chemotherapy. Thus, the use of innovative therapeutic drugs is being assessed. Bortezomib is a proteasome inhibitor with anticancer effects. In vitro antitumoral activity of Bortezomib was investigated employing human tongue (SCC-15, CAL-27), pharynx (FaDu), salivary gland (A-253) cancer cell lines and a murine cell line (SALTO-5) originated from a salivary gland adenocarcinoma arising in BALB-neuT male mice transgenic for the oncogene neu. Bortezomib inhibited cell proliferation, triggered apoptosis, modulated the expression and activation of pro-survival signaling transduction pathways proteins activated by ErbB receptors and inhibited proteasome activity in vitro. Intraperitoneal administration of Bortezomib delayed tumor growth of SALTO-5 cells transplanted in BALB-neuT mice, protracted mice survival and adjusted tumor microenvironment by increasing tumor-infiltrating immune cells (CD4
+ and CD8+ T cells, B lymphocytes, macrophages, and Natural Killer cells) and by decreasing vessels density. In addition, Bortezomib modified the expression of proteasome structural subunits in transplanted SALTO-5 cells. Our findings further support the use of Bortezomib for the treatment of HNC and reveal its ineffectiveness in counteracting the activation of deregulated specific signaling pathways in HNC cell lines when resistance to proteasome inhibition is developed., (© 2021. The Author(s).)- Published
- 2021
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174. Two different approaches of microbial community structure characterization in riverine epilithic biofilms under multiple stressors conditions: Developing molecular indicators.
- Author
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Pin L, Eiler A, Fazi S, and Friberg N
- Subjects
- Environmental Biomarkers, Environmental Monitoring, In Situ Hybridization, Fluorescence, Biofilms, Ecosystem, Microbiota, Rivers microbiology
- Abstract
Microbial communities are major players in the biogeochemical processes and ecosystem functioning of river networks. Despite their importance in the ecosystem, biomonitoring tools relying on prokaryotes are still lacking. Only a few studies have employed both metabarcoding and quantitative techniques such as catalysed reported deposition fluorescence in situ hybridization (CARD-FISH) to analyse prokaryotic communities of epilithic biofilms in river ecosystems. We intended to investigate the efficacy of both techniques in detecting changes in microbial community structure associated with environmental drivers. We report a significant correlation between the prokaryotic community composition and pH in rivers from two different geographical areas in Norway. Both CARD-FISH and metabarcoding data were following the pattern of the environmental variables, but the main feature distinguishing the community composition was the regional difference itself. Beta-dispersion analyses on both CARD-FISH abundance and metabarcoding data revealed higher accuracy of metabarcoding to differentiate regions and river systems. The CARD-FISH results showed high variability, even for samples within the same river, probably due to some unmeasured microscale ecological variability which we could not resolve. We also present a statistical method, which uses variation coefficient and overall prevalence of taxonomic groups, to detect possible biological indicators among prokaryotes using metabarcoding data. The development of new prokaryotic bioindicators would benefit from both techniques used in this study, but metabarcoding seems to be faster and more reliable than CARD-FISH for large scale bio-assessment., (© 2021 The Authors. Molecular Ecology Resources published by John Wiley & Sons Ltd.)
- Published
- 2021
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175. Adaptation of Microbial Communities to Environmental Arsenic and Selection of Arsenite-Oxidizing Bacteria From Contaminated Groundwaters.
- Author
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Zecchin S, Crognale S, Zaccheo P, Fazi S, Amalfitano S, Casentini B, Callegari M, Zanchi R, Sacchi GA, Rossetti S, and Cavalca L
- Abstract
Arsenic mobilization in groundwater systems is driven by a variety of functionally diverse microorganisms and complex interconnections between different physicochemical factors. In order to unravel this great ecosystem complexity, groundwaters with varying background concentrations and speciation of arsenic were considered in the Po Plain (Northern Italy), one of the most populated areas in Europe affected by metalloid contamination. High-throughput Illumina 16S rRNA gene sequencing, CARD-FISH and enrichment of arsenic-transforming consortia showed that among the analyzed groundwaters, diverse microbial communities were present, both in terms of diversity and functionality. Oxidized inorganic arsenic [arsenite, As(III)] was the main driver that shaped each community. Several uncharacterized members of the genus Pseudomonas , putatively involved in metalloid transformation, were revealed in situ in the most contaminated samples. With a cultivation approach, arsenic metabolisms potentially active at the site were evidenced. In chemolithoautotrophic conditions, As(III) oxidation rate linearly correlated to As(III) concentration measured at the parental sites, suggesting that local As(III) concentration was a relevant factor that selected for As(III)-oxidizing bacterial populations. In view of the exploitation of these As(III)-oxidizing consortia in biotechnology-based arsenic bioremediation actions, these results suggest that contaminated aquifers in Northern Italy host unexplored microbial populations that provide essential ecosystem services., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2021 Zecchin, Crognale, Zaccheo, Fazi, Amalfitano, Casentini, Callegari, Zanchi, Sacchi, Rossetti and Cavalca.)
- Published
- 2021
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176. Targeting the tumor immune microenvironment with "nutraceuticals": From bench to clinical trials.
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Masuelli L, Benvenuto M, Focaccetti C, Ciuffa S, Fazi S, Bei A, Miele MT, Piredda L, Manzari V, Modesti A, and Bei R
- Subjects
- Animals, Dietary Supplements, Humans, Plant Extracts, Vitamins, Neoplasms drug therapy, Tumor Microenvironment
- Abstract
The occurrence of immune effector cells in the tissue microenvironment during neoplastic progression is critical in determining tumor growth outcomes. On the other hand, tumors may also avoid immune system-mediated elimination by recruiting immunosuppressive leukocytes and soluble factors, which coordinate a tumor microenvironment that counteracts the efficiency of the antitumor immune response. Checkpoint inhibitor therapy results have indicated a way forward via activation of the immune system against cancer. Widespread evidence has shown that different compounds in foods, when administered as purified substances, can act as immunomodulators in humans and animals. Although there is no universally accepted definition of nutraceuticals, the term identifies a wide category of natural compounds that may impact health and disease statuses and includes purified substances from natural sources, plant extracts, dietary supplements, vitamins, phytonutrients, and various products with combinations of functional ingredients. In this review, we summarize the current knowledge on the immunomodulatory effects of nutraceuticals with a special focus on the cancer microenvironment, highlighting the conceptual benefits or drawbacks and subtle cell-specific effects of nutraceuticals for envisioning future therapies employing nutraceuticals as chemoadjuvants., (Copyright © 2020 Elsevier Inc. All rights reserved.)
- Published
- 2021
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177. Extensive Histopathological Characterization of Inflamed Bowel in the Dextran Sulfate Sodium Mouse Model with Emphasis on Clinically Relevant Biomarkers and Targets for Drug Development.
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Bonfiglio R, Galli F, Varani M, Scimeca M, Borri F, Fazi S, Cicconi R, Mattei M, Campagna G, Schönberger T, Raymond E, Wunder A, Signore A, and Bonanno E
- Subjects
- Animals, Colitis pathology, Cytokines metabolism, Dextran Sulfate, Disease Models, Animal, Female, Integrins metabolism, Intestinal Mucosa pathology, Mice, Inbred C57BL, Vascular Endothelial Growth Factor Receptor-2 metabolism, Mice, Biomarkers metabolism, Drug Development, Inflammatory Bowel Diseases pathology
- Abstract
This study aims to develop a reliable and reproducible inflammatory bowel disease (IBD) murine model based on a careful spatial-temporal histological characterization. Secondary aims included extensive preclinical studies focused on the in situ expression of clinically relevant biomarkers and targets involved in IBD. C57BL/6 female mice were used to establish the IBD model. Colitis was induced by the oral administration of 2% Dextran Sulfate Sodium (DSS) for 5 days, followed by 2, 4 or 9 days of water. Histological analysis was performed by sectioning the whole colon into rings of 5 mm each. Immunohistochemical analyses were performed for molecular targets of interest for monitoring disease activity, treatment response and predicting outcome. Data reported here allowed us to develop an original scoring method useful as a tool for the histological assessment of preclinical models of DSS-induced IBD. Immunohistochemical data showed a significant increase in TNF-α, α4β7, VEGFRII, GR-1, CD25, CD3 and IL-12p40 expression in DSS mice if compared to controls. No difference was observed for IL-17, IL-23R, IL-36R or F480. Knowledge of the spatial-temporal pattern distribution of the pathological lesions of a well-characterized disease model lays the foundation for the study of the tissue expression of meaningful predictive biomarkers, thereby improving translational success rates of preclinical studies for a personalized management of IBD patients.
- Published
- 2021
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178. Polyphenol-Mediated Autophagy in Cancer: Evidence of In Vitro and In Vivo Studies.
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Benvenuto M, Albonici L, Focaccetti C, Ciuffa S, Fazi S, Cifaldi L, Miele MT, De Maio F, Tresoldi I, Manzari V, Modesti A, Masuelli L, and Bei R
- Subjects
- Animals, Humans, Polyphenols pharmacology, Autophagy drug effects, Neoplasms drug therapy, Polyphenols therapeutic use
- Abstract
One of the hallmarks of cellular transformation is the altered mechanism of cell death. There are three main types of cell death, characterized by different morphological and biochemical features, namely apoptosis (type I), autophagic cell death (type II) and necrosis (type III). Autophagy, or self-eating, is a tightly regulated process involved in stress responses, and it is a lysosomal degradation process. The role of autophagy in cancer is controversial and has been associated with both the induction and the inhibition of tumor growth. Autophagy can exert tumor suppression through the degradation of oncogenic proteins, suppression of inflammation, chronic tissue damage and ultimately by preventing mutations and genetic instability. On the other hand, tumor cells activate autophagy for survival in cellular stress conditions. Thus, autophagy modulation could represent a promising therapeutic strategy for cancer. Several studies have shown that polyphenols, natural compounds found in foods and beverages of plant origin, can efficiently modulate autophagy in several types of cancer. In this review, we summarize the current knowledge on the effects of polyphenols on autophagy, highlighting the conceptual benefits or drawbacks and subtle cell-specific effects of polyphenols for envisioning future therapies employing polyphenols as chemoadjuvants.
- Published
- 2020
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179. In vivo and in vitro inhibition of osteosarcoma growth by the pan Bcl-2 inhibitor AT-101.
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Masuelli L, Benvenuto M, Izzi V, Zago E, Mattera R, Cerbelli B, Potenza V, Fazi S, Ciuffa S, Tresoldi I, Lucarelli E, Modesti A, and Bei R
- Subjects
- Animals, Apoptosis drug effects, Autophagy drug effects, Bone Neoplasms metabolism, Cell Line, Tumor, Cell Proliferation drug effects, Gossypol pharmacology, Humans, MAP Kinase Signaling System drug effects, Mice, Mice, Inbred BALB C, Osteosarcoma metabolism, Polyphenols pharmacology, Reactive Oxygen Species metabolism, Signal Transduction drug effects, p38 Mitogen-Activated Protein Kinases metabolism, Antineoplastic Agents pharmacology, Bone Neoplasms drug therapy, Gossypol analogs & derivatives, Osteosarcoma drug therapy, Proto-Oncogene Proteins c-bcl-2 antagonists & inhibitors
- Abstract
Osteosarcoma (OS) is the most common primary malignant bone tumor and mainly affects children and adolescents. The OS five-year survival rate remains very low. Thus, novel therapeutic protocols for the treatment of OS are needed. Several approaches targeting deregulated signaling pathways have been proposed. The antitumoral effects of polyphenols, which are naturally occurring compounds with potent antioxidant and anti-inflammatory activity, have been investigated in different tumors. Gossypol, which is a natural polyphenolic aldehyde isolated from the seeds of the cotton plant, has been shown to exert antitumoral activity in leukemia and lymphoma and in breast, head and neck, colon and prostate cancers. Therefore, in this study, we evaluated the effect of AT-101, which is the (-) enantiomer and more active form of gossypol, on the growth of human and murine OS cells in vitro and in vivo. Several clinical trials employing AT-101 have been performed, and some clinical trials are ongoing. Our results showed for the first time that AT-101 significantly inhibits OS cell growth in a dose- and time-dependent manner, inducing apoptosis and necrosis and partially activating autophagy. Our results demonstrated that AT-101 inhibits prosurvival signaling pathways depending on Akt, p38 MAPK and JNK. In addition, treatment with AT-101 increases the survival of OS-bearing mice. Overall, these results suggest that AT-101 is a candidate chemo-supportive molecule for the development of novel chemotherapeutic protocols for the treatment of OS.
- Published
- 2020
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180. Investigating the influences of quorum quenching and nutrient conditions on activated sludge flocs at a short-time scale.
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Salehiziri M, Amalfitano S, Gallipoli A, Gianico A, Rad HA, Braguglia CM, and Fazi S
- Subjects
- Biofouling, Bioreactors, Enzymes, Immobilized, Nutrients, Sewage, Wastewater, Quorum Sensing physiology, Waste Disposal, Fluid methods
- Abstract
Quorum sensing signals regulate various functions within activated sludge processes such as formation of microbial aggregates. Disturbance of this signaling system, known as quorum quenching (QQ), provides opportunities for eliminating some problems related to biological wastewater treatment (e.g., biofouling and excess sludge production). However, it is poorly understood how and to what extent QQ systems can affect the microbial aggregation processes and the following floc formation. In particular, an in-depth structural characterization at the scale of microbial aggregate while considering nutrient conditions in the reactor is still largely disregarded. Here, we evaluated the QQ effects at the short-term time scale (i.e., after 4 h for the exogenous period and 19 h for exogenous/endogenous period), by combining advanced techniques for microbial characterization (flow cytometry, CARD-FISH, and confocal laser scanning microscopy) and conventional physical-chemical assessments. The results indicated that by implementing QQ agents (immobilized Acylase I enzyme in porous alginate beads) the abundance of single cells and suspended microbial aggregates in the supernatant did not show significant changes during the exogenous period. Conversely, at the end of the exogenous/endogenous period a significant increase of single prokaryotic cells, small and large microbial aggregates favored the growth of grazers, including free-living nanoflagellates and ciliates. Flocs became looser and thinner than those in the control reactor, thus affecting the sludge settling behavior. Inability of microbial community in degradation of soluble protein during the endogenous period confirmed that the QQ agents are likely to inhibit the secretion of protease enzyme within microbial communities of activated sludge., (Copyright © 2020 Elsevier Ltd. All rights reserved.)
- Published
- 2020
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181. Curcumin Enhances the Antitumoral Effect Induced by the Recombinant Vaccinia Neu Vaccine (rV- neu T) in Mice with Transplanted Salivary Gland Carcinoma Cells.
- Author
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Focaccetti C, Benvenuto M, Ciuffa S, Fazi S, Scimeca M, Nardi A, Miele MT, Battisti A, Bonanno E, Modesti A, Masuelli L, and Bei R
- Subjects
- Animals, Cancer Vaccines immunology, Carcinoma immunology, Disease Models, Animal, Genes, erbB-2 immunology, Mice, Mice, Inbred BALB C, Recombination, Genetic immunology, Salivary Gland Neoplasms immunology, Vaccinia virus immunology, Antibody-Dependent Cell Cytotoxicity drug effects, Antineoplastic Agents pharmacology, Carcinoma drug therapy, Curcumin pharmacology, Salivary Gland Neoplasms drug therapy, Salivary Glands immunology
- Abstract
The survival rate for head and neck cancer patients has not substantially changed in the last two decades. We previously showed that two rV- neu T intratumoral injections induced an efficient antitumor response and rejection of transplanted Neu (rat ErbB2/neu oncogene-encoded protein)-overexpressing salivary gland tumor cells in BALB- neu T mice (BALB/c mice transgenic for the rat ErbB2/neu oncogene). However, reiterated poxviral vaccinations increase neutralizing antibodies to viral proteins in humans that prevent immune response against the recombinant antigen expressed by the virus. Curcumin (CUR) is a polyphenol with antineoplastic and immunomodulatory properties. The aim of this study was to employ CUR administration to boost the anti-Neu immune response and anticancer activity induced by one rV- neu T intratumoral vaccination in BALB- neu T mice. Here, we demonstrated that the combined rV-n eu T+CUR treatment was more effective at reducing tumor growth and increasing mouse survival, anti-Neu humoral response, and IFN-γ/IL-2 T-cell release in vitro than the individual treatment. rV- neu T+CUR-treated mice showed an increased infiltration of CD4
+ /CD8+ T lymphocytes within the tumor as compared to those that received the individual treatment. Overall, CUR enhanced the antitumoral effect and immune response to Neu induced by the rV- neu T vaccine in mice. Thus, the combined treatment might represent a successful strategy to target ErbB2/Neu-overexpressing tumors., Competing Interests: The authors declare no conflict of interest. The funders had no role in the design of the study; in the collection, analyses, or interpretation of data; in the writing of the manuscript, or in the decision to publish the results.- Published
- 2020
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182. Microbiomes in Soils Exposed to Naturally High Concentrations of CO 2 (Bossoleto Mofette Tuscany, Italy).
- Author
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Fazi S, Ungaro F, Venturi S, Vimercati L, Cruz Viggi C, Baronti S, Ugolini F, Calzolari C, Tassi F, Vaselli O, Raschi A, and Aulenta F
- Abstract
Direct and indirect effects of extremely high geogenic CO
2 levels, commonly occurring in volcanic and hydrothermal environments, on biogeochemical processes in soil are poorly understood. This study investigated a sinkhole in Italy where long-term emissions of thermometamorphic-derived CO2 are associated with accumulation of carbon in the topsoil and removal of inorganic carbon in low pH environments at the bottom of the sinkhole. The comparison between interstitial soil gasses and those collected in an adjacent bubbling pool and the analysis of the carbon isotopic composition of CO2 and CH4 clearly indicated the occurrence of CH4 oxidation and negligible methanogenesis in soils at the bottom of the sinkhole. Extremely high CO2 concentrations resulted in higher microbial abundance (up to 4 × 109 cell g-1 DW) and a lower microbial diversity by favoring bacteria already reported to be involved in acetogenesis in mofette soils (i.e., Firmicutes, Chloroflexi, and Acidobacteria). Laboratory incubations to test the acetogenic and methanogenic potential clearly showed that all the mofette soil supplied with hydrogen gas displayed a remarkable CO2 fixation potential, primarily due to the activity of acetogenic microorganisms. By contrast, negligible production of acetate occurred in control tests incubated with the same soils, under identical conditions, without the addition of hydrogen. In this study, we report how changes in diversity and functions of the soil microbial community - induced by high CO2 concentration - create peculiar biogeochemical profile. CO2 emission affects carbon cycling through: (i) inhibition of the decomposition of the organic carbon and (ii) promotion of CO2 -fixation via the acetyl-CoA pathway. Sites naturally exposed to extremely high CO2 levels could potentially represent an untapped source of microorganisms with unique capabilities to catalytically convert CO2 into valuable organic chemicals and fuels., (Copyright © 2019 Fazi, Ungaro, Venturi, Vimercati, Cruz Viggi, Baronti, Ugolini, Calzolari, Tassi, Vaselli, Raschi and Aulenta.)- Published
- 2019
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183. Programmed death ligand 1 expression in prostate cancer cells is associated with deep changes of the tumor inflammatory infiltrate composition.
- Author
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Scimeca M, Bonfiglio R, Urbano N, Cerroni C, Anemona L, Montanaro M, Fazi S, Schillaci O, Mauriello A, and Bonanno E
- Subjects
- C-Reactive Protein biosynthesis, Humans, Inflammation pathology, Male, Middle Aged, Prostatic Neoplasms pathology, Retrospective Studies, Serum Amyloid P-Component biosynthesis, B7-H1 Antigen biosynthesis, Prostatic Neoplasms metabolism
- Abstract
Background: The main aim of this study was to investigate the putative correlation between the composition of intratumoral inflammatory infiltrate and the expression of programmed death ligand 1 (PD-L1) by prostate cancer cells. In addition, we evaluated the correlation between the expression of PD-L1 and PTX3., Methods: We enrolled 100 patients from which we collected one surgical sample each. Paraffin serial sections were obtained to perform histological classifications and tissues microarray construction. Serial tissues microarray paraffin sections were also used for PD-L1 analysis and intratumoral inflammatory infiltrate characterization (CD4, CD8, CD57, CD3, PD1, PSGL-1, TIGIT, CD20, CD38, CD68, CD163, and PTX3) by immunohistochemistry ., Results: Our result showed a significant increase of the number of both PD-L1 and PTX3 positive cells in prostate tumors respect to benign lesions. Inflammatory infiltrate of PD-L1 positive prostate cancer lesions was characterized by a decrease of both PD1 positive lymphocytes and tumor-infiltrated macrophages, mainly M2 subpopulation. Also, PTX3 expression showed an inverse correlation with the number of PD-L1 positive prostate cancer cells., Conclusions: If confirmed, our data could be useful to predict the variations of the inflammatory population related to PD-L1 expression in prostate cancer. This can lay the foundation to establish therapeutic protocols able to inhibit the PD-L1 activity and, at the same time, to reactivate the antitumor inflammatory process., (Copyright © 2019 Elsevier Inc. All rights reserved.)
- Published
- 2019
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184. Polyphenols as Immunomodulatory Compounds in the Tumor Microenvironment: Friends or Foes?
- Author
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Focaccetti C, Izzi V, Benvenuto M, Fazi S, Ciuffa S, Giganti MG, Potenza V, Manzari V, Modesti A, and Bei R
- Subjects
- Animals, Humans, Immunologic Factors therapeutic use, Immunotherapy, Inflammation drug therapy, Inflammation immunology, Inflammation metabolism, Polyphenols therapeutic use, Tumor Microenvironment genetics, Immunologic Factors metabolism, Polyphenols metabolism, Tumor Microenvironment physiology
- Abstract
Polyphenols are natural antioxidant compounds ubiquitously found in plants and, thus, ever present in human nutrition (tea, wine, chocolate, fruits and vegetables are typical examples of polyphenol-rich foods). Widespread evidence indicate that polyphenols exert strong antioxidant, anti-inflammatory, anti-microbial and anti-cancer activities, and thus, they are generally regarded to as all-purpose beneficial nutraceuticals or supplements whose use can only have a positive influence on the body. A closer look to the large body of results of years of investigations, however, present a more complex scenario where polyphenols exert different and, sometimes, paradoxical effects depending on dose, target system and cell type and the biological status of the target cell. Particularly, the immunomodulatory potential of polyphenols presents two opposite faces to researchers trying to evaluate their usability in future cancer therapies: on one hand, these compounds could be beneficial suppressors of peri-tumoral inflammation that fuels cancer growth. On the other hand, they might suppress immunotherapeutic approaches and give rise to immunosuppressive cell clones that, in turn, would aid tumor growth and dissemination. In this review, we summarize knowledge of the immunomodulatory effects of polyphenols with a particular focus on cancer microenvironment and immunotherapy, highlighting conceptual pitfalls and delicate cell-specific effects in order to aid the design of future therapies involving polyphenols as chemoadjuvants., Competing Interests: The authors declare no conflict of interest.
- Published
- 2019
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185. Biological As(III) oxidation in biofilters by using native groundwater microorganisms.
- Author
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Crognale S, Casentini B, Amalfitano S, Fazi S, Petruccioli M, and Rossetti S
- Subjects
- Bacteria genetics, Filtration, Flow Cytometry, High-Throughput Nucleotide Sequencing, Oxidation-Reduction, Polymerase Chain Reaction, RNA, Bacterial analysis, RNA, Ribosomal, 16S analysis, Arsenic metabolism, Bacteria metabolism, Drinking Water analysis, Groundwater analysis, Groundwater microbiology, Water Pollutants, Chemical metabolism, Water Purification
- Abstract
Arsenic (As) contamination in drinking water represents a worldwide threat to human health. During last decades, the exploitation of microbial As-transformations has been proposed for bioremediation applications. Among biological methods for As-contaminated water treatment, microbial As(III)-oxidation is one of the most promising approaches since it can be coupled to commonly used adsorption removal technologies, without requiring the addition of chemicals and producing toxic by-products. Despite the As(III) oxidation capability has been described in several bacterial pure or enrichment cultures, very little is known about the real potentialities of this process when mixed microbial communities, naturally occurring in As contaminated waters, are used. This study highlighted the contribution of native groundwater bacteria to As(III)-oxidation in biofilters, under conditions suitable for a household-scale treatment system. This work elucidated the influence of a variety of experimental conditions (i.e., various filling materials, flow rates, As(III) inflow concentration, As(III):As(V) ratio, filter volumes) on the microbially-mediated As(III)-oxidation process in terms of oxidation efficiency and rate. The highest oxidation efficiencies (up to 90% in 3 h) were found on coarse sand biofilters treating total initial As concentration of 100 μg L
-1 . The detailed microbial characterization of the As(III) oxidizing biofilms revealed the occurrence of several OTUs affiliated with families known to oxidize As(III) (e.g., Burkholderiaceae, Comamonadaceae, Rhodobacteraceae, Xanthomonadaceae). Furthermore, As-related functional genes increased in biofilter systems in line with the observed oxidative performances., (Copyright © 2018 Elsevier B.V. All rights reserved.)- Published
- 2019
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186. Microbiome profiling in extremely acidic soils affected by hydrothermal fluids: the case of the Solfatara Crater (Campi Flegrei, southern Italy).
- Author
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Crognale S, Venturi S, Tassi F, Rossetti S, Rashed H, Cabassi J, Capecchiacci F, Nisi B, Vaselli O, Morrison HG, Sogin ML, and Fazi S
- Subjects
- Acids, Archaea genetics, Bacteria genetics, Biodiversity, Italy, Soil Microbiology, Archaea classification, Bacteria classification, Microbiota physiology, Soil chemistry
- Abstract
An integrated geochemical and microbiological investigation of soils from the Solfatara Crater (Campi Flegrei, southern Italy) demonstrated that interstitial soil gases dominated by CO2 and other typical hydrothermal gaseous species (e.g. H2S, CH4, ethane, benzene, alkenes and S-bearing organic compounds) influenced the composition of microbial communities. The relatively high concentrations of hydrothermal fluids permeating the soil produced acidic conditions and whitish deposits that characterize the Solfatara Crater floor. Archaea and Bacteria showed almost equal cell abundance (up to 3.2 × 107 and 4.2 × 107 cell/g, respectively) with relatively low levels of biodiversity and equitability in sites characterized by elevated temperatures (up to 70°C), very low pH values (up to 2.2) and reducing conditions. In these sites, high-throughput sequencing showed the marked selection of microorganisms, mainly affiliated with the genera Thermoplasma, Ferroplasma and Acidithiobacillus. A relatively high biodiversity and concomitant distinctive structure of the microbial community were observed in soils poorly affected by fumarolic emissions that were oxic and rich in organic matter.
- Published
- 2018
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187. The biogeochemical vertical structure renders a meromictic volcanic lake a trap for geogenic CO2 (Lake Averno, Italy).
- Author
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Tassi F, Fazi S, Rossetti S, Pratesi P, Ceccotti M, Cabassi J, Capecchiacci F, Venturi S, and Vaselli O
- Subjects
- Geology, Italy, Water Microbiology, Carbon Dioxide, Lakes microbiology, Volcanic Eruptions
- Abstract
Volcanic lakes are characterized by physicochemical favorable conditions for the development of reservoirs of C-bearing greenhouse gases that can be dispersed to air during occasional rollover events. By combining a microbiological and geochemical approach, we showed that the chemistry of the CO2- and CH4-rich gas reservoir hosted within the meromictic Lake Averno (Campi Flegrei, southern Italy) are related to the microbial niche differentiation along the vertical water column. The simultaneous occurrence of diverse functional groups of microbes operating under different conditions suggests that these habitats harbor complex microbial consortia that impact on the production and consumption of greenhouse gases. In the epilimnion, the activity of aerobic methanotrophic bacteria and photosynthetic biota, together with CO2 dissolution at relatively high pH, enhanced CO2- and CH4 consumption, which also occurred in the hypolimnion. Moreover, results from computations carried out to evaluate the dependence of the lake stability on the CO2/CH4 ratios, suggested that the water density vertical gradient was mainly controlled by salinity and temperature, whereas the effect of dissolved gases was minor, excepting if extremely high increases of CH4 are admitted. Therefore, biological processes, controlling the composition of CO2 and CH4, contributed to stabilize the lake stratification of the lake. Overall, Lake Averno, and supposedly the numerous worldwide distributed volcanic lakes having similar features (namely bio-activity lakes), acts as a sink for the CO2 supplied from the hydrothermal/magmatic system, displaying a significant influence on the local carbon budget.
- Published
- 2018
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188. Deconvolution model to resolve cytometric microbial community patterns in flowing waters.
- Author
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Amalfitano S, Fazi S, Ejarque E, Freixa A, Romaní AM, and Butturini A
- Subjects
- Nucleic Acids analysis, Flow Cytometry methods, Microbiota physiology, Models, Biological, Rivers microbiology
- Abstract
Flow cytometry is suitable to discriminate and quantify aquatic microbial cells within a spectrum of fluorescence and light scatter signals. Using fixed gating and operational settings, we developed a finite distribution mixture model, followed by the Voronoi tessellation, to resolve bivariate cytometric profiles into cohesive subgroups of events. This procedure was applied to outline recurrent patterns and quantitative changes of the aquatic microbial community along a river hydrologic continuum. We found five major subgroups within each of the commonly retrieved populations of cells with Low and High content of Nucleic Acids (namely, LNA, and HNA cells). Moreover, the advanced analysis allowed assessing changes of community patterns perturbed by a wastewater feed. Our approach for cytometric data deconvolution confirmed that flow cytometry could represent a prime candidate technology for assessing microbial community patterns in flowing waters. © 2017 International Society for Advancement of Cytometry., (© 2017 International Society for Advancement of Cytometry.)
- Published
- 2018
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189. Enhancing methane production from food waste fermentate using biochar: the added value of electrochemical testing in pre-selecting the most effective type of biochar.
- Author
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Cruz Viggi C, Simonetti S, Palma E, Pagliaccia P, Braguglia C, Fazi S, Baronti S, Navarra MA, Pettiti I, Koch C, Harnisch F, and Aulenta F
- Abstract
Background: Recent studies have suggested that addition of electrically conductive biochar particles is an effective strategy to improve the methanogenic conversion of waste organic substrates, by promoting syntrophic associations between acetogenic and methanogenic organisms based on interspecies electron transfer processes. However, the underlying fundamentals of the process are still largely speculative and, therefore, a priori identification, screening, and even design of suitable biochar materials for a given biotechnological process are not yet possible., Results: Here, three charcoal-like products (i.e., biochars) obtained from the pyrolysis of different lignocellulosic materials, (i.e., wheat bran pellets, coppiced woodlands, and orchard pruning) were tested for their capacity to enhance methane production from a food waste fermentate. In all biochar-supplemented (25 g/L) batch experiments, the complete methanogenic conversion of fermentate volatile fatty acids proceeded at a rate that was up to 5 times higher than that observed in the unamended (or sand-supplemented) controls. Fluorescent in situ hybridization analysis coupled with confocal laser scanning microscopy revealed an intimate association between archaea and bacteria around the biochar particles and provided a clear indication that biochar also shaped the composition of the microbial consortium. Based on the application of a suite of physico-chemical and electrochemical characterization techniques, we demonstrated that the positive effect of biochar is directly related to the electron-donating capacity (EDC) of the material, but is independent of its bulk electrical conductivity and specific surface area. The latter properties were all previously hypothesized to play a major role in the biochar-mediated interspecies electron transfer process in methanogenic consortia., Conclusions: Collectively, these results of this study suggest that for biochar addition in anaerobic digester operation, the screening and identification of the most suitable biochar material should be based on EDC determination, via simple electrochemical tests.
- Published
- 2017
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190. Phylogenetic Structure and Metabolic Properties of Microbial Communities in Arsenic-Rich Waters of Geothermal Origin.
- Author
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Crognale S, Zecchin S, Amalfitano S, Fazi S, Casentini B, Corsini A, Cavalca L, and Rossetti S
- Abstract
Arsenic (As) is a toxic element released in aquatic environments by geogenic processes or anthropic activities. To counteract its toxicity, several microorganisms have developed mechanisms to tolerate and utilize it for respiratory metabolism. However, still little is known about identity and physiological properties of microorganisms exposed to natural high levels of As and the role they play in As transformation and mobilization processes. This work aims to explore the phylogenetic composition and functional properties of aquatic microbial communities in As-rich freshwater environments of geothermal origin and to elucidate the key microbial functional groups that directly or indirectly may influence As-transformations across a natural range of geogenic arsenic contamination. Distinct bacterial communities in terms of composition and metabolisms were found. Members of Proteobacteria , affiliated to Alpha - and Betaproteobacteria were mainly retrieved in groundwaters and surface waters, whereas Gammaproteobacteria were the main component in thermal waters. Most of the OTUs from thermal waters were only distantly related to 16S rRNA gene sequences of known taxa, indicating the occurrence of bacterial biodiversity so far unexplored. Nitrate and sulfate reduction and heterotrophic As(III)-oxidization were found as main metabolic traits of the microbial cultivable fraction in such environments. No growth of autotrophic As(III)-oxidizers, autotrophic and heterotrophic As(V)-reducers, Fe-reducers and oxidizers, Mn-reducers and sulfide oxidizers was observed. The ars genes, involved in As(V) detoxifying reduction, were found in all samples whereas aioA [As(III) oxidase] and arrA genes [As(V) respiratory reductase] were not found. Overall, we found that As detoxification processes prevailed over As metabolic processes, concomitantly with the intriguing occurrence of novel thermophiles able to tolerate high levels of As.
- Published
- 2017
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191. Quality and reactivity of dissolved organic matter in a Mediterranean river across hydrological and spatial gradients.
- Author
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Ejarque E, Freixa A, Vazquez E, Guarch A, Amalfitano S, Fazi S, Romaní AM, and Butturini A
- Abstract
Understanding DOM transport and reactivity in rivers is essential to having a complete picture of the global carbon cycle. In this study, we explore the effects of hydrological variability and downstream transport on dissolved organic matter (DOM) dynamics in a Mediterranean river. We sampled the main stem of the river Tordera from the source to the sea, over a range of fifteen hydrological conditions including extreme events (flood and drought). By exploring spatial and temporal gradients of DOM fluorescence properties, river hydrology was found to be a significant predictor of DOM spatial heterogeneity. An additional space-resolved mass balance analysis performed on four contrasting hydrological conditions revealed that this was due to a shift in the biogeochemical function of the river. Flood conditions caused a conservative transport of DOM, generating a homogeneous, humic-like spatial profile of DOM quality. Lower flows induced a non-conservative, reactive transport of DOM, which enhanced the spatial heterogeneity of DOM properties. Moreover, the downstream evolution of DOM chemostatic behaviour revealed that the role of hydrology in regulating DOM properties increased gradually downstream, indicating an organised inter-dependency between the spatial and the temporal dimensions. Overall, our findings reveal that riverine DOM dynamics is in constant change owing to varying hydrological conditions, and emphasize that in order to fully understand the role of rivers in the global carbon cycle, it is necessary to take into account the full range of hydrological variability, from floods to droughts., (Copyright © 2017 The Authors. Published by Elsevier B.V. All rights reserved.)
- Published
- 2017
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192. Arsenic removal by discontinuous ZVI two steps system for drinking water production at household scale.
- Author
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Casentini B, Falcione FT, Amalfitano S, Fazi S, and Rossetti S
- Subjects
- Groundwater, Iron, Water Pollutants, Chemical, Water Purification, Arsenic, Drinking Water microbiology
- Abstract
Different countries in Europe still suffer of elevated arsenic (As) concentration in groundwaters used for human consumption. In the case of households not connected to the distribution system, decentralized water supply systems, such as Point of Use (POU) and Point of Entry (POE), offer a direct benefit for the consumers. Field scale ex-situ treatment systems based on metallic iron (ZVI) are already available for the production of reduced volumes of drinking water in remote areas (village scale). To address drinking water needs at larger scale, we designed a pilot unit able to produce an elevated daily volume of water for human consumption. We tested the long-term As removal efficiency of a two steps ZVI treatment unit for the production of 400 L/day clean water based on the combination of ZVI corrosion process with sedimentation and retention of freshly formed Fe precipitates. The system treated 100 μg/L As(V)-contaminated oxic groundwater in a discontinuous operation mode at a flow rate of 1 L/min for 31 days. Final removal was 77-96% and the most performing step was aeration/sedimentation (A/S) tank with a 60-94% efficiency. Arsenic in the outflow slightly exceeded the drinking water limit of 10 μg/L only after 6000 L treated and Fe concentration was always below 0.2 mg/L. Under proposed operating conditions ZVI passivation readily occurred and, as a consequence, Fe production sharply decreased. Arsenic mobility attached to particulate was 13-60% after ZVI column and 37-100% after A/S tank. Uniform amorphous cluster of Fe nanoparticles (100 nm) formed during aeration drove As removal process with an adsorption capacity corresponding to 20.5 mg
As /gFe . Research studies often focus only on chemico-physical aspects disregarding the importance of biological processes that may co-occur and interfere with ZVI corrosion, As removal and safe water production. We explored the microbial transport dynamics by flow cytometry, proved as a suitable tool to monitor the fate of both single cells and bioactive particles along the treatment train of the pilot unit. A net release of bioactive particles, representing on average 26.5% of flow cytometric events, was promoted by the ZVI filter, with densities 10 times higher than those found in the inflow. In conclusion, the proposed system was efficient to treat large daily volumes of As contaminated groundwater. However, filter design and operating conditions should be carefully adapted to specific situation, since several key factors affect As removal efficiency. An effort in the optimization of ZVI filter design should be made to reduce fast observed ZVI passivation and low As adsorption capacity of the whole filter. More attention to biomass retention and bioactive particles travelling within the unit should be given in order to elucidate bacteria influences on As removal efficiency and related sanitary risks on long term basis., (Copyright © 2016 Elsevier Ltd. All rights reserved.)- Published
- 2016
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193. Chlamydial seasonal dynamics and isolation of 'Candidatus Neptunochlamydia vexilliferae' from a Tyrrhenian coastal lake.
- Author
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Pizzetti I, Schulz F, Tyml T, Fuchs BM, Amann R, Horn M, and Fazi S
- Subjects
- Chlamydiales classification, Chlamydiales genetics, In Situ Hybridization, Fluorescence, Islands, Phylogeny, RNA, Ribosomal, 16S genetics, Seasons, Chlamydiales isolation & purification, Lakes microbiology
- Abstract
The Chlamydiae are a phylum of obligate intracellular bacteria comprising important human and animal pathogens, yet their occurrence in the environment, their phylogenetic diversity and their host range has been largely underestimated. We investigated the seasonality of environmental chlamydiae in a Tyrrhenian coastal lake. By catalysed reporter deposition fluorescence in situ hybridization, we quantified the small planktonic cells and detected a peak in the abundance of environmental chlamydiae in early autumn with up to 5.9 × 10(4) cells ml(-1) . Super-resolution microscopy improved the visualization and quantification of these bacteria and enabled the detection of pleomorphic chlamydial cells in their protist host directly in an environmental sample. To isolate environmental chlamydiae together with their host, we applied a high-throughput limited dilution approach and successfully recovered a Vexillifera sp., strain harbouring chlamydiae (93% 16S rRNA sequence identity to Simkania negevensis), tentatively named 'Candidatus Neptunochlamydia vexilliferae'. Transmission electron microscopy in combination with fluorescence in situ hybridization was used to prove the intracellular location of these bacteria representing the first strain of marine chlamydiae stably maintained alongside with their host in a laboratory culture. Taken together, this study contributes to a better understanding of the distribution and diversity of environmental chlamydiae in previously neglected marine environments., (© 2015 Society for Applied Microbiology and John Wiley & Sons Ltd.)
- Published
- 2016
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194. The Arsenite Oxidation Potential of Native Microbial Communities from Arsenic-Rich Freshwaters.
- Author
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Fazi S, Crognale S, Casentini B, Amalfitano S, Lotti F, and Rossetti S
- Subjects
- Alphaproteobacteria isolation & purification, Alphaproteobacteria metabolism, Betaproteobacteria isolation & purification, Betaproteobacteria metabolism, Biomass, Deltaproteobacteria isolation & purification, Deltaproteobacteria metabolism, Fresh Water chemistry, Groundwater chemistry, Groundwater microbiology, RNA, Ribosomal, 16S genetics, Sequence Analysis, DNA, Water Pollutants, Chemical analysis, Arsenic analysis, Arsenites metabolism, Fresh Water microbiology, Oxidation-Reduction, Water Microbiology
- Abstract
Microorganisms play an important role in speciation and mobility of arsenic in the environment, by mediating redox transformations of both inorganic and organic species. Since arsenite [As(III)] is more toxic than arsenate [As(V)] to the biota, the microbial driven processes of As(V) reduction and As(III) oxidation may play a prominent role in mediating the environmental impact of arsenic contamination. However, little is known about the ecology and dynamics of As(III)-oxidizing populations within native microbial communities exposed to natural high levels of As. In this study, two techniques for single cell quantification (i.e., flow cytometry, CARD-FISH) were used to analyze the structure of aquatic microbial communities across a gradient of arsenic (As) contamination in different freshwater environments (i.e., groundwaters, surface and thermal waters). Moreover, we followed the structural evolution of these communities and their capacity to oxidize arsenite, when experimentally exposed to high As(III) concentrations in experimental microcosms. Betaproteobacteria and Deltaproteobacteria were the main groups retrieved in groundwaters and surface waters, while Beta and Gammaproteobacteria dominated the bacteria community in thermal waters. At the end of microcosm incubations, the communities were able to oxidize up to 95 % of arsenite, with an increase of Alphaproteobacteria in most of the experimental conditions. Finally, heterotrophic As(III)-oxidizing strains (one Alphaproteobacteria and two Gammaproteobacteria) were isolated from As rich waters. Our findings underlined that native microbial communities from different arsenic-contaminated freshwaters can efficiently perform arsenite oxidation, thus contributing to reduce the overall As toxicity to the aquatic biota.
- Published
- 2016
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195. Microbial responses to polycyclic aromatic hydrocarbon contamination in temporary river sediments: Experimental insights.
- Author
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Zoppini A, Ademollo N, Amalfitano S, Capri S, Casella P, Fazi S, Marxsen J, and Patrolecco L
- Subjects
- Biomass, Polycyclic Aromatic Hydrocarbons toxicity, Water Pollutants, Chemical toxicity, Environmental Monitoring, Polycyclic Aromatic Hydrocarbons analysis, Rivers chemistry, Water Microbiology, Water Pollutants, Chemical analysis
- Abstract
Temporary rivers are characterized by dry-wet phases and represent an important water resource in semi-arid regions worldwide. The fate and effect of contaminants have not been firmly established in temporary rivers such as in other aquatic environments. In this study, we assessed the effects of sediment amendment with Polycyclic Aromatic Hydrocarbons (PAHs) on benthic microbial communities. Experimental microcosms containing natural (Control) and amended sediments (2 and 20 mg PAHs kg(-1) were incubated for 28 days. The PAH concentrations in sediments were monitored weekly together with microbial community structural (biomass and phylogenetic composition by TGGE and CARD-FISH) and functional parameters (ATP concentration, community respiration rate, bacterial carbon production rate, extracellular enzyme activities). The concentration of the PAH isomers did not change significantly with the exception of phenanthrene. No changes were observed in the TGGE profiles, whereas the occurrence of Alpha- and Beta-Proteobacteria was significantly affected by the treatments. In the amended sediments, the rates of carbon production were stimulated together with aminopeptidase enzyme activity. The community respiration rates showed values significantly lower than the Control after 1 day from the amendment then recovering the Control values during the incubation. A negative trend between the respiration rates and ATP concentration was observed only in the amended sediments. This result indicates a potential toxic effect on the oxidative phosphorylation processes. The impoverishment of the energetic resources that follows the PAH impact may act as a domino on the flux of energy from prokaryotes to the upper level of the trophic chain, with the potential to alter the temporary river functioning.
- Published
- 2016
- Full Text
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196. Marine amoebae with cytoplasmic and perinuclear symbionts deeply branching in the Gammaproteobacteria.
- Author
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Schulz F, Tyml T, Pizzetti I, Dyková I, Fazi S, Kostka M, and Horn M
- Subjects
- Aquatic Organisms classification, Aquatic Organisms isolation & purification, Aquatic Organisms microbiology, Cytoplasm microbiology, Gammaproteobacteria isolation & purification, Species Specificity, Amoeba classification, Amoeba microbiology, Cell Nucleus microbiology, Gammaproteobacteria classification, Gammaproteobacteria physiology, Symbiosis physiology
- Abstract
Amoebae play an important ecological role as predators in microbial communities. They also serve as niche for bacterial replication, harbor endosymbiotic bacteria and have contributed to the evolution of major human pathogens. Despite their high diversity, marine amoebae and their association with bacteria are poorly understood. Here we describe the isolation and characterization of two novel marine amoebae together with their bacterial endosymbionts, tentatively named 'Candidatus Occultobacter vannellae' and 'Candidatus Nucleophilum amoebae'. While one amoeba strain is related to Vannella, a genus common in marine habitats, the other represents a novel lineage in the Amoebozoa. The endosymbionts showed only low similarity to known bacteria (85-88% 16S rRNA sequence similarity) but together with other uncultured marine bacteria form a sister clade to the Coxiellaceae. Using fluorescence in situ hybridization and transmission electron microscopy, identity and intracellular location of both symbionts were confirmed; one was replicating in host-derived vacuoles, whereas the other was located in the perinuclear space of its amoeba host. This study sheds for the first time light on a so far neglected group of protists and their bacterial symbionts. The newly isolated strains represent easily maintainable model systems and pave the way for further studies on marine associations between amoebae and bacterial symbionts.
- Published
- 2015
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197. Anaerobic arsenite oxidation with an electrode serving as the sole electron acceptor: a novel approach to the bioremediation of arsenic-polluted groundwater.
- Author
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Pous N, Casentini B, Rossetti S, Fazi S, Puig S, and Aulenta F
- Subjects
- Aerobiosis, Biodegradation, Environmental, Electrodes, Graphite, Oxidation-Reduction, Arsenic chemistry, Arsenites chemistry, Gammaproteobacteria metabolism, Groundwater chemistry, Water Pollutants, Chemical chemistry
- Abstract
Arsenic contamination of soil and groundwater is a serious problem worldwide. Here we show that anaerobic oxidation of As(III) to As(V), a form which is more extensively and stably adsorbed onto metal-oxides, can be achieved by using a polarized (+497 mV vs. SHE) graphite anode serving as terminal electron acceptor in the microbial metabolism. The characterization of the microbial populations at the electrode, by using in situ detection methods, revealed the predominance of gammaproteobacteria. In principle, the proposed bioelectrochemical oxidation process would make it possible to provide As(III)-oxidizing microorganisms with a virtually unlimited, low-cost and low-maintenance electron acceptor as well as with a physical support for microbial attachment., (Copyright © 2014 Elsevier B.V. All rights reserved.)
- Published
- 2015
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198. Magnetite particles triggering a faster and more robust syntrophic pathway of methanogenic propionate degradation.
- Author
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Cruz Viggi C, Rossetti S, Fazi S, Paiano P, Majone M, and Aulenta F
- Subjects
- Acetates metabolism, Archaea cytology, Archaea drug effects, Archaea metabolism, Bacteria cytology, Bacteria drug effects, Bacteria metabolism, Biodegradation, Environmental drug effects, Butyrates metabolism, Diffusion, Electron Transport drug effects, Hydrogen chemistry, In Situ Hybridization, Fluorescence, Kinetics, Partial Pressure, Time Factors, Ferrosoferric Oxide pharmacology, Methane metabolism, Propionates metabolism
- Abstract
Interspecies electron transfer mechanisms between Bacteria and Archaea play a pivotal role during methanogenic degradation of organic matter in natural and engineered anaerobic ecosystems. Growing evidence suggests that in syntrophic communities electron transfer does not rely exclusively on the exchange of diffusible molecules and energy carriers such as hydrogen or formate, rather microorganisms have the capability to exchange metabolic electrons in a more direct manner. Here, we show that supplementation of micrometer-size magnetite (Fe3O4) particles to a methanogenic sludge enhanced (up to 33%) the methane production rate from propionate, a key intermediate in the anaerobic digestion of organic matter and a model substrate to study energy-limited syntrophic communities. The stimulatory effect most probably resulted from the establishment of a direct interspecies electron transfer (DIET), based on magnetite particles serving as electron conduits between propionate-oxidizing acetogens and carbon dioxide-reducing methanogens. Theoretical calculations revealed that DIET allows electrons to be transferred among syntrophic partners at rates which are substantially higher than those attainable via interspecies H2 transfer. Besides the remarkable potential for improving anaerobic digestion, which is a proven biological strategy for renewable energy production, the herein described conduction-based DIET could also have a role in natural methane emissions from magnetite-rich soils and sediments.
- Published
- 2014
- Full Text
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199. Stream hydrological fragmentation drives bacterioplankton community composition.
- Author
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Fazi S, Vázquez E, Casamayor EO, Amalfitano S, and Butturini A
- Subjects
- Actinobacteria classification, Actinobacteria genetics, Bacteroidetes classification, Bacteroidetes genetics, Colony Count, Microbial, DNA, Bacterial classification, Ecosystem, Fresh Water chemistry, Hydrology, Phylogeny, Plankton classification, Plankton genetics, Proteobacteria classification, Proteobacteria genetics, RNA, Ribosomal, 16S classification, Seasons, Seawater chemistry, Sequence Analysis, DNA, Spain, Actinobacteria isolation & purification, Bacteroidetes isolation & purification, DNA, Bacterial genetics, Microbial Consortia physiology, Plankton isolation & purification, Proteobacteria isolation & purification, RNA, Ribosomal, 16S genetics
- Abstract
In Mediterranean intermittent streams, the hydrological fragmentation in summer and the successive water flow re-convergence in autumn allow exploring how local processes shape the microbial community within the same habitat. The objectives of this study were to determine how bacterial community composition responded to hydrological fragmentation in summer, and to evaluate whether the seasonal shifts in community composition predominate over the effects of episodic habitat fragmentation. The bacterial community was assessed along the intermittent stream Fuirosos (Spain), at different levels of phylogenetic resolution by in situ hybridization, fingerprinting, and 16S rRNA gene sequencing. The hydrological fragmentation of the stream network strongly altered the biogeochemical conditions with the depletion of oxidized solutes and caused changes in dissolved organic carbon characteristics. In the isolated ponds, beta-Proteobacteria and Actinobacteria increased their abundance with a gradual reduction of the alpha-diversity as pond isolation time increased. Moreover, fingerprinting analysis clearly showed a shift in community composition between summer and autumn. In the context of a seasonal shift, the temporary stream fragmentation simultaneously reduced the microbial dispersion and affected local environmental conditions (shift in redox regime and quality of the dissolved organic matter) tightly shaping the bacterioplankton community composition.
- Published
- 2013
- Full Text
- View/download PDF
200. High abundance of novel environmental chlamydiae in a Tyrrhenian coastal lake (Lago di Paola, Italy).
- Author
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Pizzetti I, Fazi S, Fuchs BM, and Amann R
- Abstract
For a long time the bacterial phylum of Chlamydiae exclusively consisted of one family of obligate intracellular bacteria, the Chlamydiaceae, which encompassed causative agents of severe diseases. In the 1990s, environmental chlamydiae were discovered as symbionts of free-living amoebae and other eukaryotic hosts. During a sampling campaign in September 2008, while monitoring Planctomycetes, we retrieved 20 almost full-length 16S rRNA gene sequences affiliated with Chlamydiales from a lake at the Tyrrhenian coast of central Italy (Lago di Paola, Latium). Two main clusters were identified. The nine sequences within the tight cluster I shared ∼98% identity, just like the six sequences of cluster II. The 16S rRNA sequence identity between the two novel groups was with 88% higher than with all known families of the order Chlamydiales. Four types of less frequent chlamydial 16S rRNA sequences were also detected. Two oligonucleotide probes were designed, and optimized. Chl282 targets the cluster I and almost all other Chlamydiales, while Chl282bis targets the cluster II and few other sequences. By catalysed reporter deposition fluorescence in situ hybridization (CARD-FISH), we identified in the Lago di Paola picoplankton abundant tiny cells with dot-shaped morphology and, interestingly, rarely also protists with intracellular pleomorphic chlamydiae. Abundances of the novel chlamydial clusters were up to 5 × 10(4) cells per millilitre. The two clusters were also detected in similar numbers during a second sampling in October 2010. This confirmed the relevance of the two newly described clusters of chlamydiae in Lago di Paola, not only enlarging the knowledge on the biodiversity of environmental chlamydiae in aquatic habitats, but also raising sanitary issues that should be addressed in the future., (© 2012 Society for Applied Microbiology and Blackwell Publishing Ltd.)
- Published
- 2012
- Full Text
- View/download PDF
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