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Flux transfer events (FTEs) are signatures of transient reconnection at the dayside magnetopause, transporting flux from the dayside of the magnetosphere into the magnetotail lobes. They have previously been observed to contain a combination of magnetosheath and magnetospheric plasma. On 12 February 2007, the four Cluster spacecraft were widely separated across the magnetopause and observed a crater-like FTE as they crossed the Earth's dayside magnetopause through its low-latitude boundary layer. The particle instruments on the Cluster spacecraft were in burst mode and returning data providing 3-D velocity distribution functions (VDFs) at 4 s resolution during the observation of this FTE. Moreover, the magnetic field observed during the event remained closely aligned with the spacecraft spin axis and thus we have been able to use these 3-D data to reconstruct nearly full pitch angle distributions of electrons and ions at high time resolution (up to 32 times faster than available from the normal mode data stream). These observations within the boundary layer and inside the core of the FTE show that both the interior and the surrounding structure of the FTE consist of multiple individual layers of plasma, in greater number than previously identified. Our observations show a cold plasma inside the core, a thin layer of antiparallel-moving electrons at the edge of FTE itself, and field-aligned ions with Alfvénic speeds at the trailing edge of the FTE. We discuss the plasma characteristics in these FTE layers, their possible relevance to the magnetopause reconnection processes and attempt to distinguish which of the various different FTE models may be relevant in this case. These data are particularly relevant given the impending launch of NASA's MMS mission, for which similar observations are expected to be more routine.

The Plasma Electron and Current Experiment (PEACE) instruments operate on all four of the Cluster spacecraft and measure the 3-D velocity distribution of electrons in the energy range from 0.59 eV to 26.4 keV during each spacecraft spin. Pitch angle distributions and moments of the velocity distribution are also produced. As the mission has progressed, the efficiency of the detectors has declined. Several factors may play a role in this decline such as exposure to radiation, high electron fluxes and spacecraft thruster firings. To account for these variations, continuous in-flight calibration work is essential. The purpose of this paper is to describe the PEACE calibration parameters, focussing in particular on those that vary over time, and to describe the methods which are used to determine their evolution.

The precise mechanism for the formation of magnetic islands in the magnetotail and the subsequent evolution are still controversial. New investigations have provided the first observational evidence of secondary reconnection in the earthward outflow jet of primary reconnection in the magnetotail. The secondary reconnection takes place 38 c/ωpi earthward from the primary reconnection site and results in the birth of a magnetic island observed. This generation mechanism is different from the widely used model of multiple reconnection X-lines. The duration of the secondary reconnection was approximate one ion gyration period (5 s). The observations resemble recent numerical simulations where magnetic reconnection could spontaneously and transiently happen in the outflow jet, called secondary reconnection, which was used to explain the formation of the dipolarization fronts. Coincidentally, another magnetic island moving earthward passed through three satellites successively. By this chance we find the magnetic island was accelerated towards Earth with an acceleration of about 9 km s−2 at −19 RE in the magnetotail.

This paper reflects on the importance of study groups in contributing to a positive postgraduate experience and explores specific concepts, such as "disappearing behaviours" in contrasting the "official" languages of universities with the beneficial behaviours found through study groups. Additionally the paper advocates the systematic inclusion of strategies such as study groups in the postgraduate experience. Funding arrangements and research frameworks for higher education in Australia focus on student progress and completion, as well as comparison of research quality within and between universities. As a result, there is a significant emphasis on timely completion of postgraduate degrees. This paper posits that there is an apparent contradiction between the indicators of success in this area, such as completion rates and annual progress reports and the positive contribution that study groups can make to the doctoral student experience. (Contains 2 figures.)

The Taylor microscale is one of the fundamental turbulence scales. Not easily estimated in the interplanetary medium employing single spacecraft data, it has generally been studied through two point correlations. In this paper we present an alternative, albeit mathematically equivalent, method for estimating the Taylor microscale (λT). We make two independent determinations employing multi-spacecraft data sets from the Cluster mission, one using magnetic field data and a second using electron velocity data. Our results using the magnetic field data set yields a scale length of 1538 ± 550 km, slightly less than, but within the same range as, values found in previous magnetic-field-based studies. During time periods where both magnetic field and electron velocity data can be used, the two values can be compared. Relative comparisons show λT computed from the velocity is often significantly smaller than that from the magnetic field data. Due to a lack of events where both measurements are available, the absolute λT based on the electron fluid velocity is not able to be determined.

Modelling plasma entry in the polar cusp has been successful in reproducing ion dispersions observed in the cusp at low and mid-altitudes. The use of a realistic convection pattern, when the IMF-By is large and stable, allowed Wing et al. (2001) to predict double cusp signatures that were subsequently observed by the DMSP spacecraft. In this paper we present a cusp crossing where two cusp populations are observed, separated by a gap around 1° Invariant Latitude (ILAT) wide. Cluster 1 (C1) and Cluster 2 (C2) observed these two cusp populations with a time delay of 3 min, and about 15 and 42 min later Cluster 4 (C4) and Cluster 3 (C3) observed, respectively, a single cusp population. A peculiarity of this event is the fact that the second cusp population seen on C1 and C2 was observed at the same time as the first cusp population on C4. This would tend to suggest that the two cusp populations had spatial features similar to the double cusp. Due to the nested crossing of C1 and C2 through the gap between the two cusp populations, C2 being first to leave the cusp and last to re-enter it, these observations are difficult to be explained by two distinct cusps with a gap in between. However, since we observe the cusp in a narrow area of local time post-noon, a second cusp may have been present in the pre-noon sector but could not be observed. On the other hand, these observations are in agreement with a motion of the cusp first dawnward and then back duskward due to the effect of the IMF-By component.

In response to stimuli, biological processes are tightly controlled by dynamic cellular signaling mechanisms. Reversible protein phosphorylation occurs on rapid time-scales (milliseconds to seconds), making it an ideal carrier of these signals. Advances in mass spectrometry-based proteomics have led to the identification of many tens of thousands of phosphorylation sites, yet for the majority of these the kinase is unknown and the underlying network topology of signaling networks therefore remains obscured. Identifying kinase substrate relationships (KSRs) is therefore an important goal in cell signaling research. Existing consensus sequence motif based prediction algorithms do not consider the biological context of KSRs, and are therefore insensitive to many other mechanisms guiding kinase-substrate recognition in cellular contexts. Here, we use temporal information to identify biologically relevant KSRs from Large-scale In Vivo Experiments (KSR-LIVE) in a data-dependent and automated fashion. First, we used available phosphorylation databases to construct a repository of existing experimentally-predicted KSRs. For each kinase in this database, we used time-resolved phosphoproteomics data to examine how its substrates changed in phosphorylation over time. Although substrates for a particular kinase clustered together, they often exhibited a different temporal pattern to the phosphorylation of the kinase. Therefore, although phosphorylation regulates kinase activity, our findings imply that substrate phosphorylation likely serve as a better proxy for kinase activity than kinase phosphorylation. KSR-LIVE can thereby infer which kinases are regulated within a biological context. Moreover, KSR-LIVE can also be used to automatically generate positive training sets for the subsequent prediction of novel KSRs using machine learning approaches. We demonstrate that this approach can distinguish between Akt and Rps6kb1, two kinases that share the same linear consensus motif, and provide evidence suggesting IRS-1 S265 as a novel Akt site. KSR-LIVE is an open-access algorithm that allows users to dissect phosphorylation signaling within a specific biological context, with the potential to be included in the standard analysis workflow for studying temporal high-throughput signal transduction data.

The Kelvin-Helmholtz Instability (KHI) can drive waves at the magnetopause. These waves can grow to form rolled-up vortices and facilitate transfer of plasma into the magnetosphere. To investigate the persistence and frequency of such waves at the magnetopause we have carried out a survey of all Double Star 1 magnetopause crossings, using a combination of ion and magnetic field measurements. Using criteria originally used in a Geotail study made by Hasegawa et al. (2006) (forthwith referred to as H2006), 17 candidate events were identified from the entire TC-1 mission (covering ~623 orbits where the magnetopause was sampled), a majority of which were on the dayside of the terminator. The relationship between density and shear velocity was then investigated, to identify the predicted signature of a rolled up vortex from H2006 and all 17 events exhibited some level of rolled up behavior. The location of the events had a clear dawn-dusk asymmetry, with 12 (71%) on the post noon, dusk flank suggesting preferential growth in this region.

Magnetic holes with relatively small scale sizes, detected by Cluster and TC-1 in the magnetotail plasma sheet, are studied in this paper. It is found that these magnetic holes are spatial structures and they are not magnetic depressions generated by the flapping movement of the magnetotail current sheet. Most of the magnetic holes (93%) were observed during intervals with Bz larger than Bx, i.e. they are more likely to occur in a dipolarized magnetic field topology. Our results also suggest that the occurrence of these magnetic holes might have a close relationship with the dipolarization process. The magnetic holes typically have a scale size comparable to the local proton Larmor radius and are accompanied by an electron energy flux enhancement at a 90° pitch angle, which is quite different from the previously observed isotropic electron distributions inside magnetic holes in the plasma sheet. It is also shown that most of the magnetic holes occur in marginally mirror-stable environments. Whether the plasma sheet magnetic holes are generated by the mirror instability related to ions or not, however, is unknown. Comparison of ratios, scale sizes and propagation direction of magnetic holes detected by Cluster and TC-1, suggests that magnetic holes observed in the vicinity of the TC-1 orbit (~7–12 RE) are likely to be further developed than those observed by Cluster (~7–18 RE).

Observations of a continual erosion of the strahl and build up of the halo with distance from the sun suggests that, at least in part, the halo may be formed as a result of scattering of the strahl. This hypothesis is supported in this paper by observation of intense scattering of strahl electrons, which gives rise to a proto-halo electron population. This population eventually merges into, or becomes the halo. The fact that observations of intense scattering of the strahl are not common implies that the formation of the halo may not be a continuous process, but one that occurs, in part, in bursts in regions where the conditions responsible for the scattering are optimum.

A data set of the Cluster cusp crossings over a 5-year period is studied for the interhemispheric comparison of the dipole tilt angle effect on the latitude of the mid-altitude cusp. The result shows that the dipole tilt angle has a clear control of the cusp latitudinal location. Although, the northern cusp moves 0.054° ILAT for every 1° increase in the dipole tilt angle at the mean altitude of 5.2 RE, the southern cusp moves 0.051° ILAT for every 1° increase in the dipole tilt angle at the mean altitude of 6.6 RE. The northern cusp dependence agrees with the trend formed by other observations of different satellites for different altitudes, whereas the southern cusp does not. We therefore suggest that there is an inter-hemispheric difference in the dipole tilt angle dependence of cusp, latitudinal location, which has an impact on other observations of different satellites in different altitudes.

We study the temperature ratio of protons and electrons based on statistics of Cluster observations in the Earth's magnetotail from 2001 to 2004. During these years, from June to November, the Cluster spacecraft visited the plasma sheet at the distance r~−19 RE. We use proton and electron moments collected in the central region of the plasma sheet (|Z|RE). We find an average ratio of proton and electron temperatures ⟨Tp/Te ⟩ ≈ 3.5. The dependence of Tp on Te can be approximated by the power-law function: Tp ≈ 11Te0.62, where Tp and Te are measured in MK. A previous reported ratio ⟨Tp/Te ⟩ ~ 7 is limited to small electron temperatures Te and curlometer current density is not found.

Travelling compression regions (TCRs) are perturbations in the magnetotail lobe magnetic field caused by structures moving Earthward or tailward within the plasma sheet. Previous works have suggested that these structures are created by either time-dependant reconnection occurring at a single X-line, forming a flux-bulge-type structure, or space-variant reconnection at multiple X-lines, forming flux-rope-type structures. In this study we examine an event in which Cluster 2 observed a TCR while the 3 remaining Cluster spacecraft observed the underlying magnetic structure at a range of distances from the neutral sheet. The magnetic structure has a velocity of (99, 154, −31) km s−1 in GSM (|V| = 186 km s−1), an estimated size of 1.19 RE along the direction of travel and a size between 1.94 and 2.86 RE in the direction perpendicular to the current sheet. As the structure passes the spacecraft, Cluster 1 and Cluster 4 observed a bipolar signature in BZ, plasma-sheet-like plasma and field-aligned electron flows. Cluster 3 passed closest to the centre of the structure and observed two separate reductions in the plasma density (with field-aligned electron flows); these drop-outs in the plasma sheet were possibly created by the actions of X-lines. The second drop-out in the plasma sheet also includes a reversal of the ion flow, a signature consistent with the passage of a reconnecting X-line past the spacecraft. Between the X-lines, the plasma outflow from the X-lines caused an increase in pressure which led to a localised expansion of the plasma and also the observations at Cluster 1 and Cluster 4 and the TCR. Our observations do not uniquely match either of the flux rope or the flux bulge predictions although the observation of two plasma sheet drop-outs (interpreted as X-lines, one active, one dormant) with plasma-sheet-like between them and only one TCR is a situation expected in multiple X-line reconnection.

From a limited number of observations it appears that vorticity is a common feature in the inner plasma sheet. With the four Cluster spacecraft and the four PEACE instruments positioned in a tetrahedral configuration, for the first time it is possible to directly estimate the electron fluid vorticity in a space plasma. We show examples of electron fluid vorticity from multiple plasma sheet crossings. These include three time periods when Cluster passed through a reconnection ion diffusion region. Enhancements in vorticity are seen in association with each crossing of the ion diffusion region.

A study of the interaction of solar wind magnetic field rotations with the Earth's magnetosphere is performed. For this event there is, for the first time, a full coverage over the dayside magnetosphere with multiple (multi)spacecraft missions from dawn to dusk, combined with ground magnetometers, radar and an auroral camera, this gives a unique coverage of the response of the Earth's magnetosphere. After a long period of southward IMF Bz and high dynamic pressure of the solar wind, the Earth's magnetosphere is eroded and compressed and reacts quickly to the turning of the magnetic field. We use data from the solar wind monitors ACE and Wind and from magnetospheric missions Cluster, THEMIS, DoubleStar and Geotail to investigate the behaviour of the magnetic rotations as they move through the bow shock and magnetosheath. The response of the magnetosphere is investigated through ground magnetometers and auroral keograms. It is found that the solar wind magnetic field drapes over the magnetopause, while still co-moving with the plasma flow at the flanks. The magnetopause reacts quickly to IMF Bz changes, setting up field aligned currents, poleward moving aurorae and strong ionospheric convection. Timing of the structures between the solar wind, magnetosheath and the ground shows that the advection time of the structures, using the solar wind velocity, correlates well with the timing differences between the spacecraft. The reaction time of the magnetopause and the ionospheric current systems to changes in the magnetosheath Bz seem to be almost immediate, allowing for the advection of the structure measured by the spacecraft closest to the magnetopause.

During April to July 2007 a combination of 10 spacecraft provided simultaneous monitoring of the dayside magnetopause across a wide range of local times. The array of four Cluster spacecraft, separated at large distances (10 000 km), were traversing the dawn-side magnetopause at high and low latitudes; the five THEMIS spacecraft were often in a 4 + 1 grouped configuration, traversing the low latitude, dusk-side magnetosphere, and the Double star, TC-1 spacecraft was in an equatorial orbit between the local times of the THEMIS and Cluster orbits. We show here a number of near simultaneous conjunctions of all 10 spacecraft at the magnetopause. One conjunction identifies an extended magnetic reconnection X-line, tilted in the low latitude, sub-solar region, which exists together with active anti-parallel reconnection sites extending to locations on the dawn-side flank. Oppositely moving FTE's are observed on all spacecraft, consistent with the initially strong IMF By conditions and the comparative locations of the spacecraft both dusk-ward and dawn-ward of noon. Comparison with other conjunctions of magnetopause crossings, which are also distributed over wide local times, supports the result that reconnection activity may occur at many sites simultaneously across the sub-solar and flank magnetopause, but linked to the large scale (extended) configuration of the merging line; broadly depending on IMF orientation. The occurrence of MR therefore inherently follows a "component" driven scenario irrespective of the guide field conditions. Some conjunctions allow the global magnetopause response to IMF changes to be observed and the distribution of spacecraft can directly confirm its shape, motion and deformation at local noon, dawn and dusk-side, simultaneously.

We describe the methodology used to set up and compute spatial derivatives of the electron moments using data acquired by the Plasma Electron And Current Experiment (PEACE) from the four Cluster spacecraft. The results are used to investigate electron vorticity in the foreshock. We find that much of the measured vorticity, under nominal conditions, appears to be caused by changes in the flow direction of the return (either reflected or leakage from the magnetosheath) and strahl electron populations as they couple to changes in the magnetic field orientation. This in turn results in deflections in the total bulk velocity producing the measured vorticity.