404,508 results on '"Elliott A"'
Search Results
152. Primary cilia signaling in astrocytes mediates development and regional-specific functional specification
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Wang, Lizheng, Guo, Qianqian, Acharya, Sandesh, Zheng, Xiao, Huynh, Vanessa, Whitmore, Brandon, Yimit, Askar, Malhotra, Mehr, Chatterji, Siddharth, Rosin, Nicole, Labit, Elodie, Chipak, Colten, Gorzo, Kelsea, Haidey, Jordan, Elliott, David A., Ram, Tina, Zhang, Qingrun, Kuipers, Hedwich, Gordon, Grant, Biernaskie, Jeff, and Guo, Jiami
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- 2024
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153. Cross-boundary effects of human impacts on animal assemblages in the coastal zone
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Ballantyne, Jasmine A., Henderson, Christopher J., Olds, Andrew D., Schlacher, Thomas A., Elliott, Brittany B., and Gilby, Ben L.
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- 2024
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154. High-Throughput Microstructural Characterization and Process Correlation Using Automated Electron Backscatter Diffraction
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Fowler, J. Elliott, Ruggles, Timothy J., Cillessen, Dale E., Johnson, Kyle L., Jauregui, Luis J., Craig, Robert L., Bianco, Nathan R., Henriksen, Amelia A., and Boyce, Brad L.
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- 2024
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155. Emergency department utilization by persons with rheumatoid arthritis: a population-based cohort study
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Contreras, Dani G., McLane, Patrick, Barber, Claire E.H., Lin, Katie, Elliott, Meghan J., Chomistek, Kelsey, McQuitty, Shanon, Davidson, Eileen, Hildebrandt, Clare, Katz, Steven, Lang, Eddy, Holroyd, Brian R., and Barnabe, Cheryl
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- 2024
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156. Radiologic Occult Metastases in Pancreatic Cancer: Analysis of Risk Factors and Survival Outcomes in the Age of Contemporary Neoadjuvant Multi-agent Chemotherapy
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Yee, Elliott J., Torphy, Robert J., Thielen, Otto N., Easwaran, Lavanya, Franklin, Oskar, Sugawara, Toshitaka, Bartsch, Christan, Garduno, Nicole, McCarter, Martin M., Ahrendt, Steven A., Schulick, Richard D., and Del Chiaro, Marco
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- 2024
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157. Plant-based diet adherence is associated with metabolic health status in adults living with and without obesity
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Carey, Mags T., Millar, Seán R., Elliott, Patrick S., Navarro, Pilar, Harrington, Janas M., Perry, Ivan J., and Phillips, Catherine M.
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- 2024
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158. Characteristics and situational aspects of seafood fraud: a comparative crime script analysis
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Lawrence, Sophie, van Ruth, Saskia, Elliott, Christopher, and Huisman, Wim
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- 2024
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159. Changing patterns in paediatric medical emergency team (MET) activations over 20 years in a single specialist paediatric hospital
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Jason Acworth, Louise Dodson, Elliott Acworth, and Julie McEniery
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Rapid response team ,Medical emergency team ,Paediatric ,Clinical deterioration ,Specialties of internal medicine ,RC581-951 - Abstract
Background: The Medical Emergency Team (MET) model was first introduced in the early 1990s and aimed to intervene at an earlier stage of patient clinical deterioration. This study aimed to describe the changes in patient demographics, patterns of activation and clinical outcomes of MET activations at our specialist paediatric hospital across a 20-year period providing the longest duration Medical Emergency Team data set published to date. Methods: This single-centre observational study prospectively collected data about MET events at a single specialist paediatric hospital in Australia from 1995 to 2014. Patient demographics, activation patterns and clinical outcomes from MET activations were analysed for the 20-year period. Results: 771 MET events were included in analysis. Most MET events involved children aged
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- 2020
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160. Extensão diatônica e compressão cromática como princípio básico unificador na Música para Cordas, Percussão e Celesta de Bartók
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Elliott Antokoletz
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Literature on music ,ML1-3930 ,Music ,M1-5000 - Abstract
Este artigo de Elliott Antokoletz (1942-2017) foi apresentado em um ciclo de cinco conferências que pronunciou, em outubro de 2009, como professor visitante na Universidade de São Paulo, em um curso de pós-graduação sobre a música de Béla Bartók. Após a visita, Antokoletz autorizou a publicação das conferências em tradução para o português. Entretanto isso só foi possível ser feito em etapas, em função da dificuldade de produção, tanto das traduções como dos complexos exemplos musicais. Este artigo é o último artigo do ciclo a ser publicado. A versão revisada e traduzida baseia-se no trabalho apresentado no Bartók International Congress, em março de 2000, do qual Antokoletz foi Chair, e cuja versão original foi publicada em inglês no International Journal of Musicology, Vol. 9 (2000), p. 303–328. A tradução foi feita por Cinthia Rangel de Freitas, com revisão e produção dos editores de Musica Theorica.
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- 2020
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161. Communicating Evidence for Impact
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Elliott, Iris
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- 2024
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162. Conclusion: Directions for Future Research
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Elliott, Iris, Mallon, Sharon, and Good, Anne
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- 2024
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163. Introduction
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Mallon, Sharon, Good, Anne, and Elliott, Iris
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- 2024
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164. Submesoscale coupling of krill and whales revealed by aggregative Lagrangian coherent structures.
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Fahlbusch, James, Cade, David, Hazen, Elliott, Elliott, Meredith, Saenz, Benjamin, Goldbogen, Jeremy, and Jahncke, Jaime
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Lagrangian coherent structures ,california current system ,cetaceans ,finite-time Lyapunov exponent (ftle) ,krill ,physical–biological coupling ,Animals ,Whales ,Ecosystem ,Euphausiacea ,Seawater - Abstract
In the marine environment, dynamic physical processes shape biological productivity and predator-prey interactions across multiple scales. Identifying pathways of physical-biological coupling is fundamental to understand the functioning of marine ecosystems yet it is challenging because the interactions are difficult to measure. We examined submesoscale (less than 100 km) surface current features using remote sensing techniques alongside ship-based surveys of krill and baleen whale distributions in the California Current System. We found that aggregative surface current features, represented by Lagrangian coherent structures (LCS) integrated over temporal scales between 2 and 10 days, were associated with increased (a) krill density (up to 2.6 times more dense), (b) baleen whale presence (up to 8.3 times more likely) and (c) subsurface seawater density (at depths up to 10 m). The link between physical oceanography, krill density and krill-predator distributions suggests that LCS are important features that drive the flux of energy and nutrients across trophic levels. Our results may help inform dynamic management strategies aimed at reducing large whales ship strikes and help assess the potential impacts of environmental change on this critical ecosystem.
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- 2024
165. Researching COVID to enhance recovery (RECOVER) pediatric study protocol: Rationale, objectives and design.
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Gross, Rachel, Thaweethai, Tanayott, Rosenzweig, Erika, Chan, James, Chibnik, Lori, Cicek, Mine, Elliott, Amy, Flaherman, Valerie, Foulkes, Andrea, Gage Witvliet, Margot, Gallagher, Richard, Gennaro, Maria, Jernigan, Terry, Karlson, Elizabeth, Katz, Stuart, Kinser, Patricia, Kleinman, Lawrence, Lamendola-Essel, Michelle, Milner, Joshua, Mohandas, Sindhu, Mudumbi, Praveen, Newburger, Jane, Rhee, Kay, Salisbury, Amy, Snowden, Jessica, Stein, Cheryl, Stockwell, Melissa, Tantisira, Kelan, Thomason, Moriah, Truong, Dongngan, Warburton, David, Wood, John, Ahmed, Shifa, Akerlundh, Almary, Alshawabkeh, Akram, Anderson, Brett, Aschner, Judy, Atz, Andrew, Aupperle, Robin, Baker, Fiona, Balaraman, Venkataraman, Banerjee, Dithi, Barch, Deanna, Baskin-Sommers, Arielle, Bhuiyan, Sultana, Bind, Marie-Abele, Bogie, Amanda, Bradford, Tamara, Buchbinder, Natalie, Bueler, Elliott, Bükülmez, Hülya, Casey, B, Chang, Linda, Chrisant, Maryanne, Clark, Duncan, Clifton, Rebecca, Clouser, Katharine, Cottrell, Lesley, Cowan, Kelly, DSa, Viren, Dapretto, Mirella, Dasgupta, Soham, Dehority, Walter, Dionne, Audrey, Dummer, Kirsten, Elias, Matthew, Esquenazi-Karonika, Shari, Evans, Danielle, Faustino, E, Fiks, Alexander, Forsha, Daniel, Foxe, John, Friedman, Naomi, Fry, Greta, Gaur, Sunanda, Gee, Dylan, Gray, Kevin, Handler, Stephanie, Harahsheh, Ashraf, Hasbani, Keren, Heath, Andrew, Hebson, Camden, Heitzeg, Mary, Hester, Christina, Hill, Sophia, Hobart-Porter, Laura, Hong, Travis, Horowitz, Carol, Hsia, Daniel, Huentelman, Matthew, Hummel, Kathy, Irby, Katherine, Jacobus, Joanna, Jacoby, Vanessa, Jone, Pei-Ni, Kaelber, David, Kasmarcak, Tyler, Kluko, Matthew, Kosut, Jessica, and Laird, Angela
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Humans ,COVID-19 ,Adolescent ,Child ,Child ,Preschool ,Female ,Young Adult ,Adult ,Male ,Infant ,SARS-CoV-2 ,Infant ,Newborn ,Prospective Studies ,Research Design ,Cohort Studies ,Post-Acute COVID-19 Syndrome - Abstract
IMPORTANCE: The prevalence, pathophysiology, and long-term outcomes of COVID-19 (post-acute sequelae of SARS-CoV-2 [PASC] or Long COVID) in children and young adults remain unknown. Studies must address the urgent need to define PASC, its mechanisms, and potential treatment targets in children and young adults. OBSERVATIONS: We describe the protocol for the Pediatric Observational Cohort Study of the NIHs REsearching COVID to Enhance Recovery (RECOVER) Initiative. RECOVER-Pediatrics is an observational meta-cohort study of caregiver-child pairs (birth through 17 years) and young adults (18 through 25 years), recruited from more than 100 sites across the US. This report focuses on two of four cohorts that comprise RECOVER-Pediatrics: 1) a de novo RECOVER prospective cohort of children and young adults with and without previous or current infection; and 2) an extant cohort derived from the Adolescent Brain Cognitive Development (ABCD) study (n = 10,000). The de novo cohort incorporates three tiers of data collection: 1) remote baseline assessments (Tier 1, n = 6000); 2) longitudinal follow-up for up to 4 years (Tier 2, n = 6000); and 3) a subset of participants, primarily the most severely affected by PASC, who will undergo deep phenotyping to explore PASC pathophysiology (Tier 3, n = 600). Youth enrolled in the ABCD study participate in Tier 1. The pediatric protocol was developed as a collaborative partnership of investigators, patients, researchers, clinicians, community partners, and federal partners, intentionally promoting inclusivity and diversity. The protocol is adaptive to facilitate responses to emerging science. CONCLUSIONS AND RELEVANCE: RECOVER-Pediatrics seeks to characterize the clinical course, underlying mechanisms, and long-term effects of PASC from birth through 25 years old. RECOVER-Pediatrics is designed to elucidate the epidemiology, four-year clinical course, and sociodemographic correlates of pediatric PASC. The data and biosamples will allow examination of mechanistic hypotheses and biomarkers, thus providing insights into potential therapeutic interventions. CLINICAL TRIALS.GOV IDENTIFIER: Clinical Trial Registration: http://www.clinicaltrials.gov. Unique identifier: NCT05172011.
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- 2024
166. Adapting, Innovating, and Scaling Foundational Learning: Four Lessons from Scaling Teaching at the Right Level in Botswana. Executive Summary
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Brookings Institution, Center for Universal Education, Molly Curtiss Wyss, Ghulam Omar Qargha, Gabrielle Arenge, Tendekai Mukoyi, Maya Elliott, Moitshepi Matsheng, and Karen Clune
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Millions Learning, a project of the Center for Universal Education (CUE) at the Brookings Institution, explores scaling and sustaining effective innovations leading to improved system-wide approaches. CUE is implementing a series of Real-time Scaling Labs (RTSLs), in partnership with local institutions in several countries, to generate evidence and provide practical recommendations around the process of scaling in global education. CUE, in partnership with Youth Impact, launched an RTSL in Botswana focused on the process of implementing, adapting, scaling, and sustaining the Teaching at the Right Level (TaRL) approach in primary schools across the country. The case of TaRL in Botswana offers a rich example of how an innovation developed and refined in one context can be adapted to and strategically expanded in a new location by a local organization in partnership with the government. While TaRL's scaling journey in Botswana is still unfolding, the case provides an opportunity to investigate key facilitating factors, decisions, and barriers that have contributed to and constrained the scaling process to date. This summary, and the report it draws from, explores four key lessons that have emerged from the work of scaling TaRL in Botswana.
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- 2023
167. Libfork: portable continuation-stealing with stackless coroutines
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Williams, Conor John and Elliott, James
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Computer Science - Distributed, Parallel, and Cluster Computing - Abstract
Fully-strict fork-join parallelism is a powerful model for shared-memory programming due to its optimal time scaling and strong bounds on memory scaling. The latter is rarely achieved due to the difficulty of implementing continuation stealing in traditional High Performance Computing (HPC) languages -- where it is often impossible without modifying the compiler or resorting to non-portable techniques. We demonstrate how stackless coroutines (a new feature in C++20) can enable fully-portable continuation stealing and present libfork a lock-free fine-grained parallelism library, combining coroutines with user-space, geometric segmented-stacks. We show our approach is able to achieve optimal time/memory scaling, both theoretically and empirically, across a variety of benchmarks. Compared to openMP (libomp), libfork is on average 7.2x faster and consumes 10x less memory. Similarly, compared to Intel's TBB, libfork is on average 2.7x faster and consumes 6.2x less memory. Additionally, we introduce non-uniform memory access (NUMA) optimizations for schedulers that demonstrate performance matching busy-waiting schedulers.
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- 2024
168. Interferometry of Atomic Matter Waves in the Cold Atom Lab onboard the International Space Station
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Williams, Jason R., Sackett, Charles A., Ahlers, Holger, Aveline, David C., Boegel, Patrick, Botsi, Sofia, Charron, Eric, Elliott, Ethan R., Gaaloul, Naceur, Giese, Enno, Herr, Waldemar, Kellogg, James R., Kohel, James M., Lay, Norman E., Meister, Matthias, Müller, Gabriel, Müller, Holger, Oudrhiri, Kamal, Phillips, Leah, Pichery, Annie, Rasel, Ernst M., Roura, Albert, Sbroscia, Matteo, Schleich, Wolfgang P., Schneider, Christian, Schubert, Christian, Sen, Bejoy, Thompson, Robert J., and Bigelow, Nicholas P.
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Physics - Atomic Physics ,Physics - Space Physics ,Quantum Physics - Abstract
Ultracold atomic gases hold unique promise for space science by capitalizing on quantum advantages and extended freefall, afforded in a microgravity environment, to enable next-generation precision sensors. Atom interferometers are a class of quantum sensors which can use freely falling gases of atoms cooled to sub-photon-recoil temperatures to provide unprecedented sensitivities to accelerations, rotations, and gravitational forces, and are currently being developed for space-based applications in gravitational, earth, and planetary sciences, as well as to search for subtle forces that could signify physics beyond General Relativity and the Standard Model. NASA's Cold Atom Lab (CAL) operates onboard the International Space Station as a multi-user facility for studies of ultracold atoms and to mature quantum technologies, including atom interferometry, in persistent microgravity. In this paper, we report on path-finding experiments utilizing ultracold $^{87}$Rb atoms in the CAL atom interferometer, which was enabled by an on-orbit upgrade of the CAL science module: A three-pulse Mach-Zehnder interferometer was studied to understand limitations from the influence of ISS vibrations. Additionally, Ramsey shear-wave interferometry was used to manifest interference patterns in a single run that were observable for over 150 ms free-expansion time. Finally, the CAL atom interferometer was used to remotely measure the photon recoil from the atom interferometer laser as a demonstration of the first quantum sensor using matter-wave interferometry in space., Comment: 14 pages, 5 figures
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- 2024
169. De-Biasing the Bias: Methods for Improving Disparity Assessments with Noisy Group Measurements
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Wastvedt, Solvejg, Snoke, Joshua, Agniel, Denis, Lai, Julie, Elliott, Marc N., and Martino, Steven C.
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Statistics - Methodology - Abstract
Health care decisions are increasingly informed by clinical decision support algorithms, but these algorithms may perpetuate or increase racial and ethnic disparities in access to and quality of health care. Further complicating the problem, clinical data often have missing or poor quality racial and ethnic information, which can lead to misleading assessments of algorithmic bias. We present novel statistical methods that allow for the use of probabilities of racial/ethnic group membership in assessments of algorithm performance and quantify the statistical bias that results from error in these imputed group probabilities. We propose a sensitivity analysis approach to estimating the statistical bias that allows practitioners to assess disparities in algorithm performance under a range of assumed levels of group probability error. We also prove theoretical bounds on the statistical bias for a set of commonly used fairness metrics and describe real-world scenarios where our theoretical results are likely to apply. We present a case study using imputed race and ethnicity from the Bayesian Improved Surname Geocoding (BISG) algorithm for estimation of disparities in a clinical decision support algorithm used to inform osteoporosis treatment. Our novel methods allow policy makers to understand the range of potential disparities under a given algorithm even when race and ethnicity information is missing and to make informed decisions regarding the implementation of machine learning for clinical decision support.
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- 2024
170. AFaCTA: Assisting the Annotation of Factual Claim Detection with Reliable LLM Annotators
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Ni, Jingwei, Shi, Minjing, Stammbach, Dominik, Sachan, Mrinmaya, Ash, Elliott, and Leippold, Markus
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Computer Science - Computation and Language ,Computer Science - Artificial Intelligence - Abstract
With the rise of generative AI, automated fact-checking methods to combat misinformation are becoming more and more important. However, factual claim detection, the first step in a fact-checking pipeline, suffers from two key issues that limit its scalability and generalizability: (1) inconsistency in definitions of the task and what a claim is, and (2) the high cost of manual annotation. To address (1), we review the definitions in related work and propose a unifying definition of factual claims that focuses on verifiability. To address (2), we introduce AFaCTA (Automatic Factual Claim deTection Annotator), a novel framework that assists in the annotation of factual claims with the help of large language models (LLMs). AFaCTA calibrates its annotation confidence with consistency along three predefined reasoning paths. Extensive evaluation and experiments in the domain of political speech reveal that AFaCTA can efficiently assist experts in annotating factual claims and training high-quality classifiers, and can work with or without expert supervision. Our analyses also result in PoliClaim, a comprehensive claim detection dataset spanning diverse political topics., Comment: ACL2024 Main Conference
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- 2024
171. Explicit large $N$ von Neumann algebras from matrix models
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Gesteau, Elliott and Santilli, Leonardo
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High Energy Physics - Theory ,Mathematical Physics ,Mathematics - Operator Algebras ,Quantum Physics - Abstract
We construct a large family of quantum mechanical systems that give rise to an emergent type III$_1$ von Neumann algebra in the large $N$ limit. Their partition functions are matrix integrals that appear in the study of various gauge theories. We calculate the real-time, finite temperature correlation functions in these systems and show that they are described by an emergent type III$_1$ von Neumann algebra at large $N$. The spectral density underlying this algebra is computed in closed form in terms of the eigenvalue density of a discrete matrix model. Furthermore, we explain how to systematically promote these theories to systems with a Hagedorn transition, and show that a type III$_1$ algebra only emerges above the Hagedorn temperature. Finally, we empirically observe in examples a correspondence between the space of states of the quantum mechanics and Calabi--Yau manifolds., Comment: 86 pages + appendices, 23 figures. v2: improvements and clarifications added, journal version
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- 2024
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172. Towards Faithful and Robust LLM Specialists for Evidence-Based Question-Answering
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Schimanski, Tobias, Ni, Jingwei, Kraus, Mathias, Ash, Elliott, and Leippold, Markus
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Computer Science - Computation and Language ,Computer Science - Machine Learning - Abstract
Advances towards more faithful and traceable answers of Large Language Models (LLMs) are crucial for various research and practical endeavors. One avenue in reaching this goal is basing the answers on reliable sources. However, this Evidence-Based QA has proven to work insufficiently with LLMs in terms of citing the correct sources (source quality) and truthfully representing the information within sources (answer attributability). In this work, we systematically investigate how to robustly fine-tune LLMs for better source quality and answer attributability. Specifically, we introduce a data generation pipeline with automated data quality filters, which can synthesize diversified high-quality training and testing data at scale. We further introduce four test sets to benchmark the robustness of fine-tuned specialist models. Extensive evaluation shows that fine-tuning on synthetic data improves performance on both in- and out-of-distribution. Furthermore, we show that data quality, which can be drastically improved by proposed quality filters, matters more than quantity in improving Evidence-Based QA.
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- 2024
173. Embedding memory-efficient stochastic simulators as quantum trajectories
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Elliott, Thomas J. and Gu, Mile
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Quantum Physics ,Condensed Matter - Statistical Mechanics - Abstract
By exploiting the complexity intrinsic to quantum dynamics, quantum technologies promise a whole host of computational advantages. One such advantage lies in the field of stochastic modelling, where it has been shown that quantum stochastic simulators can operate with a lower memory overhead than their best classical counterparts. This advantage is particularly pronounced for continuous-time stochastic processes; however, the corresponding quantum stochastic simulators heretofore prescribed operate only on a quasi-continuous-time basis, and suffer an ever-increasing circuit complexity with increasing temporal resolution. Here, by establishing a correspondence with quantum trajectories -- a method for modelling open quantum systems -- we show how truly continuous-time quantum stochastic simulators can be embedded in such open quantum systems, bridging this gap and obviating previous constraints. We further show how such an embedding can be made for discrete-time stochastic processes, which manifest as jump-only trajectories, and discuss how viewing the correspondence in the reverse direction provides new means of studying structural complexity in quantum systems themselves., Comment: 16 pages, 4 figures
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- 2024
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174. AI Art Neural Constellation: Revealing the Collective and Contrastive State of AI-Generated and Human Art
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Khan, Faizan Farooq, Kim, Diana, Jha, Divyansh, Mohamed, Youssef, Chang, Hanna H, Elgammal, Ahmed, Elliott, Luba, and Elhoseiny, Mohamed
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Computer Science - Computer Vision and Pattern Recognition - Abstract
Discovering the creative potentials of a random signal to various artistic expressions in aesthetic and conceptual richness is a ground for the recent success of generative machine learning as a way of art creation. To understand the new artistic medium better, we conduct a comprehensive analysis to position AI-generated art within the context of human art heritage. Our comparative analysis is based on an extensive dataset, dubbed ``ArtConstellation,'' consisting of annotations about art principles, likability, and emotions for 6,000 WikiArt and 3,200 AI-generated artworks. After training various state-of-the-art generative models, art samples are produced and compared with WikiArt data on the last hidden layer of a deep-CNN trained for style classification. We actively examined the various art principles to interpret the neural representations and used them to drive the comparative knowledge about human and AI-generated art. A key finding in the semantic analysis is that AI-generated artworks are visually related to the principle concepts for modern period art made in 1800-2000. In addition, through Out-Of-Distribution (OOD) and In-Distribution (ID) detection in CLIP space, we find that AI-generated artworks are ID to human art when they depict landscapes and geometric abstract figures, while detected as OOD when the machine art consists of deformed and twisted figures. We observe that machine-generated art is uniquely characterized by incomplete and reduced figuration. Lastly, we conducted a human survey about emotional experience. Color composition and familiar subjects are the key factors of likability and emotions in art appreciation. We propose our whole methodologies and collected dataset as our analytical framework to contrast human and AI-generated art, which we refer to as ``ArtNeuralConstellation''. Code is available at: https://github.com/faixan-khan/ArtNeuralConstellation
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- 2024
175. L2G2G: a Scalable Local-to-Global Network Embedding with Graph Autoencoders
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Ouyang, Ruikang, Elliott, Andrew, Limnios, Stratis, Cucuringu, Mihai, and Reinert, Gesine
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Computer Science - Machine Learning ,Computer Science - Artificial Intelligence ,Computer Science - Social and Information Networks ,Statistics - Machine Learning - Abstract
For analysing real-world networks, graph representation learning is a popular tool. These methods, such as a graph autoencoder (GAE), typically rely on low-dimensional representations, also called embeddings, which are obtained through minimising a loss function; these embeddings are used with a decoder for downstream tasks such as node classification and edge prediction. While GAEs tend to be fairly accurate, they suffer from scalability issues. For improved speed, a Local2Global approach, which combines graph patch embeddings based on eigenvector synchronisation, was shown to be fast and achieve good accuracy. Here we propose L2G2G, a Local2Global method which improves GAE accuracy without sacrificing scalability. This improvement is achieved by dynamically synchronising the latent node representations, while training the GAEs. It also benefits from the decoder computing an only local patch loss. Hence, aligning the local embeddings in each epoch utilises more information from the graph than a single post-training alignment does, while maintaining scalability. We illustrate on synthetic benchmarks, as well as real-world examples, that L2G2G achieves higher accuracy than the standard Local2Global approach and scales efficiently on the larger data sets. We find that for large and dense networks, it even outperforms the slow, but assumed more accurate, GAEs., Comment: 13 pages, 4 figures, Complex Networks 2023, Volume I, SCI 1141
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- 2024
176. The POKEMON Speckle Survey of Nearby M Dwarfs. III. The Stellar Multiplicity Rate of M Dwarfs within 15 pc
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Clark, Catherine A., van Belle, Gerard T., Horch, Elliott P., Ciardi, David R., von Braun, Kaspar, Skiff, Brian A., Winters, Jennifer G., Lund, Michael B., Everett, Mark E., Hartman, Zachary D., and Llama, Joe
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Astrophysics - Solar and Stellar Astrophysics ,Astrophysics - Earth and Planetary Astrophysics - Abstract
M dwarfs are ubiquitous in our galaxy, and the rate at which they host stellar companions, and the properties of these companions, provides a window into the formation and evolution of the star(s), and of any planets that they may host. The Pervasive Overview of 'Kompanions' of Every M dwarf in Our Neighborhood (POKEMON) speckle survey of nearby M dwarfs is volume-limited from M0V through M9V out to 15 pc, with additional targets at larger distances. In total, 1125 stars were observed, and 455 of these are within the volume-limited, 15-pc sample of M-dwarf primaries. When we combine the speckle observations with known companions from the literature, we find that the stellar multiplicity rate of M dwarfs within 15 pc is 23.5% plus or minus 2.0%, and that the companion rate is 28.8% plus or minus 2.1%. We also find that the projected separation distribution for multiples that are known to host planets peaks at 198 au, while the distribution for multiples that are not yet known to host planets peaks at 5.57 au. This result suggests that the presence of close-in stellar companions inhibits the formation of M-dwarf planetary systems, similar to what has been found for FGK stars., Comment: 18 pages, 5 figures. Accepted for publication in the Astronomical Journal
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- 2024
177. Quantum Oscillations Measurement of the Heavy Electron Mass near the van Hove Singularity in a Kagome Metal
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Rosenberg, Elliott, DeStefano, Jonathan, Lee, Yongbin, Hu, Chaowei, Shi, Yue, Graf, David, Benjamin, Shermane M., Ke, Liqin, and Chu, Jiun-Haw
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Condensed Matter - Strongly Correlated Electrons - Abstract
Kagome metals with the Fermi energy tuned near the van Hove singularities (vHss) have shown to host exotic phases including unconventional superconductivity and a chiral flux phase arising from a charge density wave. However, most quantum oscillations studies of the electronic structure of kagome metals focus on compounds which electronically or magnetically order, obscuring the unperturbed vHs. Here we present quantum oscillation measurements of YV$_6$Sn$_6$ which contains a pristine kagome lattice free from long range order. We discovered quantum oscillations corresponding to a large orbit ($\approx$70% of the Brillouin Zone area) with the heaviest mass ever observed in vanadium based kagome metals ($\approx3.3 m_e$), consistent with a Fermi pocket whose Fermi level is near the vHs. Comparing with first principles calculations suggests that the effective mass of this pocket is highly sensitive to the position of Fermi level. Our study establishes the enhanced density of states associated with a vHs in a kagome metal, allowing further insight into a potential driving mechanism for the unconventional electronic orderings in this class of materials.
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- 2024
178. Navier-Stokes-Cahn-Hilliard equations on evolving surfaces
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Elliott, Charles M. and Sales, Thomas
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Mathematics - Analysis of PDEs ,35K59 (Primary) 35Q35, 35K67 (Secondary) - Abstract
We derive a system of equations which can be seen as an evolving surface version of the diffuse interface "Model H" of Hohenberg and Halperin (1977). We then consider the well-posedness for the corresponding (tangential) system when one prescribes the evolution of the surface. Well-posedness is proved for smooth potentials in the Cahn-Hilliard equation with polynomial growth, and also for a thermodynamically relevant singular potential., Comment: 59 pages. Fixed even more typos, and corrected the long time existence result
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- 2024
179. Physics analysis for the HL-LHC: concepts and pipelines in practice with the Analysis Grand Challenge
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Held, Alexander, Kauffman, Elliott, Shadura, Oksana, and Wightman, Andrew
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High Energy Physics - Experiment - Abstract
Realistic environments for prototyping, studying and improving analysis workflows are a crucial element on the way towards user-friendly physics analysis at HL-LHC scale. The IRIS-HEP Analysis Grand Challenge (AGC) provides such an environment. It defines a scalable and modular analysis task that captures relevant workflow aspects, ranging from large-scale data processing and handling of systematic uncertainties to statistical inference and analysis preservation. By being based on publicly available Open Data, the AGC provides a point of contact for the broader community. Multiple different implementations of the analysis task that make use of various pipelines and software stacks already exist. This contribution presents an updated AGC analysis task. It features a machine learning component and expanded analysis complexity, including the handling of an extended and more realistic set of systematic uncertainties. These changes both align the AGC further with analysis needs at the HL-LHC and allow for probing an increased set of functionality. Another focus is the showcase of a reference AGC implementation, which is heavily based on the HEP Python ecosystem and uses modern analysis facilities. The integration of various data delivery strategies is described, resulting in multiple analysis pipelines that are compared to each other., Comment: 7 pages, 1 figure, proceedings of CHEP 2023, submitted to EPJ WoC
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- 2024
180. Machine Learning for Columnar High Energy Physics Analysis
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Kauffman, Elliott, Held, Alexander, and Shadura, Oksana
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High Energy Physics - Experiment - Abstract
Machine learning (ML) has become an integral component of high energy physics data analyses and is likely to continue to grow in prevalence. Physicists are incorporating ML into many aspects of analysis, from using boosted decision trees to classify particle jets to using unsupervised learning to search for physics beyond the Standard Model. Since ML methods have become so widespread in analysis and these analyses need to be scaled up for HL-LHC data, neatly integrating ML training and inference into scalable analysis workflows will improve the user experience of analysis in the HL-LHC era. We present the integration of ML training and inference into the IRIS-HEP Analysis Grand Challenge (AGC) pipeline to provide an example of how this integration can look like in a realistic analysis environment. We also utilize Open Data to ensure the project's reach to the broader community. Different approaches for performing ML inference at analysis facilities are investigated and compared, including performing inference through external servers. Since ML techniques are applied for many different types of tasks in physics analyses, we showcase options for ML integration that can be applied to various inference needs., Comment: Submitted as CHEP 2023 conference proceedings to EPJ (European Physical Journal)
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- 2024
181. Measuring the Stellar and Planetary Properties of the 51 Eridani System
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Elliott, Ashley, Boyajian, Tabetha, Ellis, Tyler, von Braun, Kaspar, Mann, Andrew W., and Schaefer, Gail
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Astrophysics - Earth and Planetary Astrophysics - Abstract
In order to study exoplanets, a comprehensive characterization of the fundamental properties of the host stars, such as angular diameter, temperature, luminosity, and age, is essential, as the formation and evolution of exoplanets are directly influenced by the host stars at various points in time. In this paper, we present interferometric observations taken of directly imaged planet host 51 Eridani at the CHARA Array. We measure the limb-darkened angular diameter of HD 29391 to be $\theta_{\rm LD} = 0.450\pm 0.006 \rm ~mas$ and combining with the Gaia zero-point corrected parallax, we get a stellar radius of $1.45 \pm 0.02 \rm~R_{\odot}$. We use the PARSEC isochrones to estimate an age of $23.2^{+1.7}_{-2.0} \rm ~Myr$ and a mass of $1.550^{+0.006}_{-0.005}\rm ~M_{\odot}$. The age and mass agree well with values in the literature, determined through a variety of methods ranging from dynamical age trace-backs to lithium depletion boundary methods. We derive a mass of $4.1 \pm 0.4\rm ~M_{Jup}$ for 51 Eri b using the Sonora Bobcat models, which further supports the possibility of 51 Eri b forming under either the hot-start formation model or the warm-start formation model., Comment: 11 pages, 6 figures, 3 tables
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- 2024
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182. Molecular analysis of primary and metastatic sites in patients with renal cell carcinoma.
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Gulati, Shuchi, Barata, Pedro, Elliott, Andrew, Bilen, Mehmet, Burgess, Earle, Choueiri, Toni, Darabi, Sourat, Dawson, Nancy, Gartrell, Benjamin, Hammers, Hans, Heath, Elisabeth, Magee, Daniel, Rao, Arpit, Ryan, Charles, Twardowski, Przemyslaw, Wei, Shuanzeng, Brugarolas, James, Zhang, Tian, Zibelman, Matthew, Nabhan, Chadi, and McKay, Rana
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Cancer ,Oncology ,Humans ,Carcinoma ,Renal Cell ,Kidney Neoplasms ,Tumor Microenvironment ,Female ,Male ,Neoplasm Metastasis ,Transcriptome ,Middle Aged ,Gene Expression Regulation ,Neoplastic ,Aged - Abstract
BACKGROUNDMetastases are the hallmark of lethal cancer, though underlying mechanisms that drive metastatic spread to specific organs remain poorly understood. Renal cell carcinoma (RCC) is known to have distinct sites of metastases, with lung, bone, liver, and lymph nodes being more common than brain, gastrointestinal tract, and endocrine glands. Previous studies have shown varying clinical behavior and prognosis associated with the site of metastatic spread; however, little is known about the molecular underpinnings that contribute to the differential outcomes observed by the site of metastasis.METHODSWe analyzed primary renal tumors and tumors derived from metastatic sites to comprehensively characterize genomic and transcriptomic features of tumor cells as well as to evaluate the tumor microenvironment at both sites.RESULTSWe included a total of 657 tumor samples (340 from the primary site [kidney] and 317 from various sites of metastasis). We show distinct genomic alterations, transcriptomic signatures, and immune and stromal tumor microenvironments across metastatic sites in a large cohort of patients with RCC.CONCLUSIONWe demonstrate significant heterogeneity among primary tumors and metastatic sites and elucidate the complex interplay between tumor cells and the extrinsic tumor microenvironment that is vital for developing effective anticancer therapies.
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- 2024
183. MP64-15 OUTCOMES FOLLOWING SURGERY FOR ADULT ACQUIRED BURIED PENIS: A MULTI-INSTITUTIONAL RETROSPECTIVE INVESTIGATION UTILIZING A NOVEL STAGING SYSTEM BASED ON THE STANDARDIZED EVALUATION OF THE PENIS, ABDOMEN AND SCROTUM
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Jamil, Marcus L, Pagura, Elizabeth J, Rozanski, Alexander, Ashouri, Kenan A, Jones, Charles P, Cho, Eric, Groves, Shawn, Alsikafi, Nejd, Breyer, Benjamin, Broghammer, Joshua, Buckley, Jill, Elliott, Sean, Erickson, Bradley A, Myers, Jeremy, Peterson, Andrew C, Rourke, Keith, Voelzke, Brian, Zhao, Lee, and Vanni, Alex J
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Biomedical and Clinical Sciences ,Clinical Sciences ,Clinical Research - Published
- 2024
184. MP32-03 THE IMPACT OF SOCIAL DEPRIVATION ON ANTERIOR URETHRAL STRICTURE RECURRENCE AFTER URETHROPLASTY—A TRAUMA AND UROLOGIC RECONSTRUCTIVE NETWORK OF SURGEONS (TURNS) ANALYSIS
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Patel, Hiren V, Li, Kevin D, Hansen, Samuel, Elliott, Sean P, Myers, Jeremy, Broghammer, Joshua, Vanni, Alex J, Peterson, Andrew C, Buckley, Jill C, Zhao, Lee C, Erickson, Bradley A, and Breyer, Benjamin N
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Biomedical and Clinical Sciences ,Clinical Sciences ,Urologic Diseases - Published
- 2024
185. MP06-14 MULTIVARIABLE OUTCOMES MODEL FOR BULBAR URETHROPLASTY SHOWS ACTIVE SMOKING IS PROTECTIVE AGAINST FUNCTIONAL SURGICAL FAILURE
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Tuong, Mei NE, Schlaepfer, Charles, Zorn, Alithea, Oleson, Jacob, Alsikafi, Nejd, Breyer, Benjamin, Broghammer, Joshua, Buckley, Jill, Cho, Eric, Dolendo, Isabella, Elliott, Sean, Grove, Shawn, Jamil, Marcus, Kurtzman, Jane, Myers, Jeremy, Patel, Hiren, Peterson, Andrew, Ratanawong, John, Rourke, Keith, Smith, Thomas, Vanni, Alex, Voelzke, Bryan, Zhao, Lee, and Erickson, Bradley
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Biomedical and Clinical Sciences ,Clinical Sciences ,Tobacco ,Tobacco Smoke and Health ,Patient Safety ,Prevention ,Cardiovascular - Published
- 2024
186. MP06-08 DEVELOPMENT OF THE ANTERIOR URETHRAL STRICTURE DISEASE STAGING WITH CLINICAL VALIDATION USING A PATIENT-CENTERED SURGICAL OUTCOME MEASURE
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Tuong, Mei NE, Schlaepfer, Charles, Zorn, Alithea, Oleson, Jacob, Alsikafi, Nejd, Breyer, Benjamin, Broghammer, Joshua, Buckley, Jill, Elliott, Sean, Grove, Shawn, Myers, Jeremy, Peterson, Andrew, Rourke, Keith, Smith, Thomas, Vanni, Alex, Voelzke, Bryan, Zhao, Lee, and Erickson, Bradley
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Biomedical and Clinical Sciences ,Clinical Sciences ,4.1 Discovery and preclinical testing of markers and technologies ,Good Health and Well Being - Published
- 2024
187. Technological developments and accelerator improvements for the FRIB beam power ramp-up
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Wei, J, Alleman, C, Ao, H, Arend, B, Barofsky, D, Beher, S, Bollen, G, Bultman, N, Casagrande, F, Chang, W, Choi, Y, Cogan, S, Cole, P, Compton, C, Cortesi, M, Curtin, J, Davidson, K, Di Carlo, S, Du, X, Elliott, K, Ewert, B, Facco, A, Fila, A, Fukushima, K, Ganni, V, Ganshyn, A, Ginter, T, Glasmacher, T, Gonzalez, A, Hao, Y, Hartung, W, Hasan, N, Hausmann, M, Holland, K, Hseuh, HC, Ikegami, M, Jager, D, Jones, S, Joseph, N, Kanemura, T, Kim, SH, Knowles, C, Konomi, T, Kortum, B, Kulkarni, N, Kwan, E, Lange, T, Larmann, M, Larter, T, Laturkar, K, LaVere, M, Laxdal, RE, LeTourneau, J, Li, Z-Y, Lidia, S, Machicoane, G, Magsig, C, Manwiller, P, Marti, F, Maruta, T, Metzgar, E, Miller, S, Momozaki, Y, Mugerian, M, Morris, D, Nesterenko, I, Nguyen, C, Ostroumov, P, Patil, M, Plastun, A, Popielarski, L, Portillo, M, Powers, A, Priller, J, Rao, X, Reaume, M, Rodriguez, S, Rogers, S, Saito, K, Sherrill, BM, Smith, MK, Song, J, Steiner, M, Stolz, A, Tarasov, O, Tousignant, B, Walker, R, Wang, X, Wenstrom, J, West, G, Witgen, K, Wright, M, Xu, T, Yamazaki, Y, Zhang, T, Zhao, Q, Zhao, S, Hurh, P, Prestemon, S, and Shen, T
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Nuclear and Plasma Physics ,Engineering ,Synchrotrons and Accelerators ,Physical Sciences ,Nuclear & Particles Physics ,Physical sciences - Abstract
The Facility for Rare Isotope Beams (FRIB) began operation with 1 kW beam power for scientific users in May 2022 upon completion of 8 years of project construction. The ramp-up to the ultimate beam power of 400 kW, planned over a 6-year period, will enable the facility to reach its full potential for scientific discovery in isotope science and applications. In December 2023, a record-high beam power of 10.4 kW uranium was delivered to the target. Technological developments and accelerator improvements are being made over the entire facility and are key to completion of the power ramp-up. Major technological developments entail the phased deployment of high-power beam-intercepting systems, including the charge strippers, the charge selection systems, the production target, and the beam dump, along with support systems, including non-conventional utilities (NCU) and remote handling facilities. Major accelerator improvements include renovations to aging legacy systems associated with experimental beam lines and system automation for improved operational efficiency and better machine availability. Experience must be gained to safely handle the increased radiological impacts associated with high beam power; extensive machine studies and advanced beam tuning procedures are needed to minimize uncontrolled beam losses for the desired operating conditions. This paper discusses the technological developments and accelerator improvements with emphasis on major R&D efforts.
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- 2024
188. Perinatal Outcomes during versus Prior to the COVID-19 Pandemic and the Role of Maternal Depression and Perceived Stress: A Report from the ECHO Program
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McKee, Kimberly S, Tang, Xiaodan, Tung, Irene, Wu, Guojing, Alshawabkeh, Akram N, Arizaga, Jessica A, Bastain, Theresa M, Brennan, Patricia A, Breton, Carrie V, Camargo, Carlos A, Cioffi, Camille C, Cordero, Jose F, Dabelea, Dana, Deutsch, Arielle R, Duarte, Cristiane S, Dunlop, Anne L, Elliott, Amy J, Ferrara, Assiamira, Karagas, Margaret R, Lester, Barry, McEvoy, Cindy T, Meeker, John, Neiderhiser, Jenae M, Herbstman, Julie, Trasande, Leonardo, O'Connor, Thomas G, Hipwell, Alison E, and Comstock, Sarah S
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Reproductive Medicine ,Midwifery ,Biomedical and Clinical Sciences ,Health Sciences ,Depression ,Perinatal Period - Conditions Originating in Perinatal Period ,Social Determinants of Health ,Conditions Affecting the Embryonic and Fetal Periods ,Infectious Diseases ,Minority Health ,Coronaviruses Disparities and At-Risk Populations ,Women's Health ,Health Disparities ,Maternal Health ,Coronaviruses ,Pediatric ,Brain Disorders ,Mental Illness ,Emerging Infectious Diseases ,Behavioral and Social Science ,Mental Health ,Clinical Research ,Pregnancy ,Maternal Morbidity and Mortality ,Reproductive health and childbirth ,Good Health and Well Being ,Humans ,Female ,COVID-19 ,Stress ,Psychological ,Adult ,Prenatal Care ,Pregnancy Outcome ,SARS-CoV-2 ,Pregnancy Complications ,Infant ,Newborn ,United States ,Gestational Age ,stress ,pregnancy ,perinatal ,birth weight ,gestational age ,program collaborators for Environmental influences on Child Health Outcomes ,Clinical Sciences ,Paediatrics and Reproductive Medicine ,Obstetrics & Reproductive Medicine ,Paediatrics ,Reproductive medicine - Abstract
ObjectiveWe sought to evaluate the impact of the coronavirus disease 2019 (COVID-19) pandemic on perinatal outcomes while accounting for maternal depression or perceived stress and to describe COVID-specific stressors, including changes in prenatal care, across specific time periods of the pandemic.Study designData of dyads from 41 cohorts from the National Institutes of Health Environmental influences on Child Health Outcomes Program (N = 2,983) were used to compare birth outcomes before and during the pandemic (n = 2,355), and a partially overlapping sample (n = 1,490) responded to a COVID-19 questionnaire. Psychosocial stress was defined using prenatal screening for depression and perceived stress. Propensity-score matching and general estimating equations with robust variance estimation were used to estimate the pandemic's effect on birth outcomes.ResultsSymptoms of depression and perceived stress during pregnancy were similar prior to and during the pandemic, with nearly 40% of participants reporting mild to severe stress, and 24% reporting mild depression to severe depression. Gestations were shorter during the pandemic (B = - 0.33 weeks, p = 0.025), and depression was significantly associated with shortened gestation (B = - 0.02 weeks, p = 0.015) after adjustment. Birth weights were similar (B = - 28.14 g, p = 0.568), but infants born during the pandemic had slightly larger birth weights for gestational age at delivery than those born before the pandemic (B = 0.15 z-score units, p = 0.041). More women who gave birth early in the pandemic reported being moderately or extremely distressed about changes to their prenatal care and delivery (45%) compared with those who delivered later in the pandemic. A majority (72%) reported somewhat to extremely negative views of the impact of COVID-19 on their life.ConclusionIn this national cohort, we detected no effect of COVID-19 on prenatal depression or perceived stress. However, experiencing the COVID-19 pandemic in pregnancy was associated with decreases in gestational age at birth, as well as distress about changes in prenatal care early in the pandemic.Key points· COVID-19 was associated with shortened gestations.. · Depression was associated with shortened gestations.. · However, stress during the pandemic remained unchanged.. · Most women reported negative impacts of the pandemic..
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- 2024
189. Trends and Disparities in Severe Maternal Morbidity Indicator Categories during Childbirth Hospitalization in California from 1997 to 2017.
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El Ayadi, Alison, Lyndon, Audrey, Kan, Peiyi, Mujahid, Mahasin, Leonard, Stephanie, Main, Elliott, and Carmichael, Suzan
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Humans ,Female ,California ,Pregnancy ,Adult ,Hospitalization ,Pregnancy Complications ,Health Status Disparities ,Young Adult ,Sepsis ,Ethnicity ,Logistic Models ,Healthcare Disparities ,Parturition ,Hispanic or Latino ,Morbidity ,Prevalence - Abstract
OBJECTIVE: Severe maternal morbidity (SMM) is increasing and characterized by substantial racial and ethnic disparities. Analyzing trends and disparities across time by etiologic or organ system groups instead of an aggregated index may inform specific, actionable pathways to equitable care. We explored trends and racial and ethnic disparities in seven SMM categories at childbirth hospitalization. STUDY DESIGN: We analyzed California birth cohort data on all live and stillbirths ≥ 20 weeks gestation from 1997 to 2017 (n = 10,580,096) using the Centers for Disease Control and Preventions SMM index. Cases were categorized into seven nonmutually exclusive indicator categories (cardiac, renal, respiratory, hemorrhage, sepsis, other obstetric, and other medical SMM). We compared prevalence and trends in SMM indicator categories overall and by racial and ethnic group using logistic and linear regression. RESULTS: SMM occurred in 1.16% of births and nontransfusion SMM in 0.54%. Hemorrhage SMM occurred most frequently (27 per 10,000 births), followed by other obstetric (11), respiratory (7), and sepsis, cardiac, and renal SMM (5). Hemorrhage, renal, respiratory, and sepsis SMM increased over time for all racial and ethnic groups. The largest disparities were for Black individuals, including over 3-fold increased odds of other medical SMM. Renal and sepsis morbidity had the largest relative increases over time (717 and 544%). Sepsis and hemorrhage SMM had the largest absolute changes over time (17 per 10,000 increase). Disparities increased over time for respiratory SMM among Black, U.S.-born Hispanic, and non-U.S.-born Hispanic individuals and for sepsis SMM among Asian or Pacific Islander individuals. Disparities decreased over time for sepsis SMM among Black individuals yet remained substantial. CONCLUSION: Our research further supports the critical need to address SMM and disparities as a significant public health priority in the United States and suggests that examining SMM subgroups may reveal helpful nuance for understanding trends, disparities, and potential needs for intervention. KEY POINTS: · By SMM subgroup, trends and racial and ethnic disparities varied yet Black individuals consistently had highest rates.. · Hemorrhage, renal, respiratory, and sepsis SMM significantly increased over time.. · Disparities increased for respiratory SMM among Black, U.S.-born Hispanic and non-U.S.-born Hispanic individuals and for sepsis SMM among Asian or Pacific Islander individuals..
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- 2024
190. Renal cell carcinoma histologic subtypes exhibit distinct transcriptional profiles.
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Barata, Pedro, Gulati, Shuchi, Elliott, Andrew, Hammers, Hans, Burgess, Earle, Gartrell, Benjamin, Darabi, Sourat, Bilen, Mehmet, Basu, Arnab, Geynisman, Daniel, Dawson, Nancy, Zibelman, Matthew, Zhang, Tian, Wei, Shuanzeng, Ryan, Charles, Heath, Elisabeth, Poorman, Kelsey, Nabhan, Chadi, and McKay, Rana
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Cancer ,Genetics ,Molecular genetics ,Oncology ,Urology ,Humans ,Carcinoma ,Renal Cell ,Kidney Neoplasms ,Transcriptome ,Female ,Male ,Gene Expression Regulation ,Neoplastic ,Middle Aged ,Aged ,Neoplasm Proteins ,Gene Expression Profiling - Abstract
Molecular profiling of clear cell renal cell carcinoma (ccRCC) tumors of patients in a clinical trial has identified distinct transcriptomic signatures with predictive value, yet data in non-clear cell variants (nccRCC) are lacking. We examined the transcriptional profiles of RCC tumors representing key molecular pathways, from a multi-institutional, real-world patient cohort, including ccRCC and centrally reviewed nccRCC samples. ccRCC had increased angiogenesis signature scores compared with the heterogeneous group of nccRCC tumors, while cell cycle, fatty acid oxidation/AMPK signaling, and fatty acid synthesis/pentose phosphate signature scores were increased in one or more nccRCC subtypes. Among both ccRCC and nccRCC tumors, T effector scores statistically correlated with increased immune cell infiltration and were more commonly associated with immunotherapy-related markers (PD-L1+/TMBhi/MSIhi). In conclusion, this study provides evidence of differential gene transcriptional profiles among ccRCC versus nccRCC tumors, providing insights for optimizing personalized and histology-specific therapeutic strategies for patients with advanced RCC.
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- 2024
191. MmcA is an electron conduit that facilitates both intracellular and extracellular electron transport in Methanosarcina acetivorans.
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Gupta, Dinesh, Chen, Keying, Elliott, Sean, and Nayak, Dipti
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Electron Transport ,Methanosarcina ,Electrons ,Oxidation-Reduction ,Cytochromes ,Methane - Abstract
Methanogens are a diverse group of Archaea that obligately couple energy conservation to the production of methane. Some methanogens encode alternate pathways for energy conservation, like anaerobic respiration, but the biochemical details of this process are unknown. We show that a multiheme c-type cytochrome called MmcA from Methanosarcina acetivorans is important for intracellular electron transport during methanogenesis and can also reduce extracellular electron acceptors like soluble Fe3+ and anthraquinone-2,6-disulfonate. Consistent with these observations, MmcA displays reversible redox features ranging from -100 to -450 mV versus SHE. Additionally, mutants lacking mmcA have significantly slower Fe3+ reduction rates. The mmcA locus is prevalent in members of the Order Methanosarcinales and is a part of a distinct clade of multiheme cytochromes that are closely related to octaheme tetrathionate reductases. Taken together, MmcA might act as an electron conduit that can potentially support a variety of energy conservation strategies that extend beyond methanogenesis.
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- 2024
192. Cu Promoted the Dynamic Evolution of Ni-Based Catalysts for Polyethylene Terephthalate Plastic Upcycling.
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Kang, Hongxing, He, Dong, Yan, Xingxu, Dao, Benjamin, Williams, Nicholas, Elliott, Gregory, Streater, Daniel, Nyakuchena, James, Huang, Jier, Pan, Xiaoqing, Xiao, Xiangheng, and Gu, Jing
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Upcycling plastic wastes into value-added chemicals is a promising approach to put end-of-life plastic wastes back into their ecocycle. As one of the polyesters that is used daily, polyethylene terephthalate (PET) plastic waste is employed here as the model substrate. Herein, a nickel (Ni)-based catalyst was prepared via electrochemically depositing copper (Cu) species on Ni foam (NiCu/NF). The NiCu/NF formed Cu/CuO and Ni/NiO/Ni(OH)2 core-shell structures before electrolysis and reconstructed into NiOOH and CuOOH/Cu(OH)2 active species during the ethylene glycol (EG) oxidation. After oxidation, the Cu and Ni species evolved into more reduced species. An indirect mechanism was identified as the main EG oxidation (EGOR) mechanism. In EGOR, NiCu60s/NF catalyst exhibited an optimal Faradaic efficiency (FE, 95.8%) and yield rate (0.70 mmol cm-2 h-1) for formate production. Also, over 80% FE of formate was achieved when a commercial PET plastic powder hydrolysate was applied. Furthermore, commercial PET plastic water bottle waste was employed as a substrate for electrocatalytic upcycling, and pure terephthalic acid (TPA) was recovered only after 1 h electrolysis. Lastly, density functional theory (DFT) calculation revealed that the key role of Cu was significantly reducing the Gibbs free-energy barrier (ΔG) of EGORs rate-determining step (RDS), promoting catalysts dynamic evolution, and facilitating the C-C bond cleavage.
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- 2024
193. Identifying predictors of translocation success in rare plant species
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Bellis, Joe, Osazuwa‐Peters, Oyomoare, Maschinski, Joyce, Keir, Matthew J, Parsons, Elliott W, Kaye, Thomas N, Kunz, Michael, Possley, Jennifer, Menges, Eric, Smith, Stacy A, Roth, Daniela, Brewer, Debbie, Brumback, William, Lange, James J, Niederer, Christal, Turner‐Skoff, Jessica B, Bontrager, Megan, Braham, Richard, Coppoletta, Michelle, Holl, Karen D, Williamson, Paula, Bell, Timothy, Jonas, Jayne L, McEachern, Kathryn, Robertson, Kathy L, Birnbaum, Sandra J, Dattilo, Adam, Dollard, John J, Fant, Jeremie, Kishida, Wendy, Lesica, Peter, Link, Steven O, Pavlovic, Noel B, Poole, Jackie, Reemts, Charlotte M, Stiling, Peter, Taylor, David D, Titus, Jonathan H, Titus, Priscilla J, Adkins, Edith D, Chambers, Timothy, Paschke, Mark W, Heineman, Katherine D, and Albrecht, Matthew A
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Climate Change Impacts and Adaptation ,Ecological Applications ,Biological Sciences ,Ecology ,Environmental Sciences ,Life on Land ,Conservation of Natural Resources ,Plants ,Reproduction ,Seeds ,Ecosystem ,endangered species ,population restoration ,reintroduction ,seedling recruitment ,species recovery ,threatened species ,especie amenazada ,especie en peligro ,reclutamiento de plántulas ,recuperación de especie ,reintroducción ,restauración poblacional ,出苗 ,受威胁物种 ,濒危物种 ,物种恢复 ,种群恢复 ,重引入 ,Agricultural and Veterinary Sciences ,Zoology ,Environmental management - Abstract
The fundamental goal of a rare plant translocation is to create self-sustaining populations with the evolutionary resilience to persist in the long term. Yet, most plant translocation syntheses focus on a few factors influencing short-term benchmarks of success (e.g., survival and reproduction). Short-term benchmarks can be misleading when trying to infer future growth and viability because the factors that promote establishment may differ from those required for long-term persistence. We assembled a large (n = 275) and broadly representative data set of well-documented and monitored (7.9 years on average) at-risk plant translocations to identify the most important site attributes, management techniques, and species' traits for six life-cycle benchmarks and population metrics of translocation success. We used the random forest algorithm to quantify the relative importance of 29 predictor variables for each metric of success. Drivers of translocation outcomes varied across time frames and success metrics. Management techniques had the greatest relative influence on the attainment of life-cycle benchmarks and short-term population trends, whereas site attributes and species' traits were more important for population persistence and long-term trends. Specifically, large founder sizes increased the potential for reproduction and recruitment into the next generation, whereas declining habitat quality and the outplanting of species with low seed production led to increased extinction risks and a reduction in potential reproductive output in the long-term, respectively. We also detected novel interactions between some of the most important drivers, such as an increased probability of next-generation recruitment in species with greater seed production rates, but only when coupled with large founder sizes. Because most significant barriers to plant translocation success can be overcome by improving techniques or resolving site-level issues through early intervention and management, we suggest that by combining long-term monitoring with adaptive management, translocation programs can enhance the prospects of achieving long-term success.
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- 2024
194. Performance of the Physical Functioning Activities of Daily Living Scale in the 2020 Medicare Health Outcomes Survey
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Hays, Ron D and Elliott, Marc N
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Health Services and Systems ,Health Sciences ,Prevention ,Rehabilitation ,Aging ,Generic health relevance ,Adult ,Humans ,Female ,Aged ,United States ,Male ,Activities of Daily Living ,Reproducibility of Results ,Medicare ,Surveys and Questionnaires ,Outcome Assessment ,Health Care ,Disability Evaluation ,Functional status ,Self-assessment ,Clinical Sciences ,Human Movement and Sports Sciences ,Public Health and Health Services ,Clinical sciences ,Allied health and rehabilitation science ,Sports science and exercise - Abstract
ObjectiveAssessing functional limitations for adults at high risk of frailty yields valuable information for identifying those in need of therapy. We evaluate a self-report measure used to assess physical function among Medicare recipients in the United States.DesignSecondary analysis of the 2020 Medicare Health Outcomes Survey.SettingA random sample of adult enrollees of 510 managed care plans.Participants287,476 adults (37% completion rate): 58% women; 16% were
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- 2024
195. Characterization and impact of non-canonical WNT signaling on outcomes of urothelial carcinoma.
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Meagher, Margaret, Krause, Harris, Elliott, Andrew, Farrell, Alex, Antonarakis, Emmanuel, Bastos, Bruno, Heath, Elisabeth, Jamieson, Christina, Stewart, Tyler, Bagrodia, Aditya, Nabhan, Chadi, Oberley, Matt, McKay, Rana, and Salmasi, Amirali
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FZD2 ,Non‐canonical ,ROR ,Urothelial carcinoma ,WNT signaling ,WNT5A ,Humans ,Wnt Proteins ,Carcinoma ,Transitional Cell ,Urinary Bladder Neoplasms ,Wnt Signaling Pathway ,Receptor Tyrosine Kinase-like Orphan Receptors ,Wnt-5a Protein - Abstract
BACKGROUND: Non-canonical WNT family (WNT5A pathway) signaling via WNT5A through ROR1 and its partner, ROR2, or Frizzled2 (FZD2) is linked to processes driving tumorigenesis and therapy resistance. We utilized a large dataset of urothelial carcinoma (UC) tumors to characterize non-canonical WNT signaling through WNT5A, ROR1, ROR2, or FZD2 expression. METHODS: NextGen Sequencing of DNA (592 genes or WES)/RNA (WTS) was performed for 4125 UC tumors submitted to Caris Life Sciences. High and low expression of WNT5A, ROR1, ROR2, and FZD2 was defined as ≥ top and
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- 2024
196. Phase 2 study of add-on parsaclisib for patients with myelofibrosis and suboptimal response to ruxolitinib: final results.
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Yacoub, Abdulraheem, Borate, Uma, Rampal, Raajit, Ali, Haris, Wang, Eunice, Gerds, Aaron, Hobbs, Gabriela, Kremyanskaya, Marina, Winton, Elliott, OConnell, Casey, Goel, Swati, Oh, Stephen, Schiller, Gary, McCloskey, James, Palmer, Jeanne, Holmes, Houston, Hager, Steven, Assad, Albert, Erickson-Viitanen, Susan, Zhou, Feng, and Daver, Naval
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Humans ,Primary Myelofibrosis ,Phosphatidylinositol 3-Kinases ,Pyrazoles ,Nitriles ,Pyrimidines ,Pyrrolidines - Abstract
Ruxolitinib reduces spleen volume, improves symptoms, and increases survival in patients with intermediate- or high-risk myelofibrosis. However, suboptimal response may occur, potentially because of signaling via the phosphoinositide 3-kinase (PI3K)/protein kinase B pathway. This phase 2 study evaluated dosing, efficacy, and safety of add-on PI3Kδ inhibitor parsaclisib for patients with primary or secondary myelofibrosis with suboptimal response to ruxolitinib. Eligible patients remained on a stable ruxolitinib dose and received add-on parsaclisib 10 or 20 mg, once daily for 8 weeks, and once weekly thereafter (daily-to-weekly dosing; n = 32); or parsaclisib 5 or 20 mg, once daily for 8 weeks, then 5 mg once daily thereafter (all-daily dosing; n = 42). Proportion of patients achieving a ≥10% decrease in spleen volume at 12 weeks was 28% for daily-to-weekly dosing and 59.5% for all-daily dosing. Proportions of patients achieving ≥50% decrease at week 12 in Myelofibrosis Symptom Assessment Form and Myeloproliferative Neoplasms Symptom Assessment Form symptom scores were 14% and 18% for daily-to-weekly dosing, and 28% and 32% for all-daily dosing, respectively. Most common nonhematologic treatment-emergent adverse events were nausea (23%), diarrhea (22%), abdominal pain and fatigue (each 19%), and cough and dyspnea (each 18%). New-onset grade 3 and 4 thrombocytopenia were observed in 19% of patients, each dosed daily-to-weekly, and in 26% and 7% of patients dosed all-daily, respectively, managed with dose interruptions. Hemoglobin levels remained steady. The addition of parsaclisib to stable-dose ruxolitinib can reduce splenomegaly and improve symptoms, with manageable toxicity in patients with myelofibrosis with suboptimal response to ruxolitinib. This trial was registered at www.clinicaltrials.gov as #NCT02718300.
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- 2024
197. Rash and Fever in a Returned Traveler
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Kons, Helena, Herron, Elliott D., Pacheco, Zachary S., and Shufflebarger, Erin F.
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fever in returned traveler ,tropical medicine ,Dengue fever - Abstract
Case Presentation: A 21-year-old, otherwise healthy female presented to the emergency department with fever among other nonspecific symptoms after recently returning from Ghana. On physical exam, she had a characteristic upper extremity rash, and a tourniquet test revealed numerous petechiae. The diagnosis of dengue was suspected and subsequently confirmed.Discussion: Dengue is one of many viral illnesses that should be considered in returning travelers presenting with fever and other nonspecific symptoms. Emergency physicians must keep a broad differential when evaluating fever in returned travelers and prioritize history and physical exam findings to help narrow the diagnosis and provide appropriate management and supportive care while awaiting further confirmatory testing.
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- 2024
198. Current clinical evidence is insufficient to support HMME–PDT as the first choice of treatment for young children with port wine birthmarks
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Gao, Chao, Nguyen, Vi, Hochman, Marcelo L, Gao, Lin, Chen, Elliott H, Friedman, Harold I, Nelson, John Stuart, and Tan, Wenbin
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Biomedical and Clinical Sciences ,Clinical Sciences ,Pediatric ,Clinical Research ,Good Health and Well Being ,efficacy ,hematoporphyrin monomethyl ether ,photodynamic therapy ,port wine birthmark ,pulsed dye laser - Abstract
BackgroundPort wine birthmark (PWB) is a congenital vascular malformation of the skin. Pulsed dye laser (PDL) is the "gold standard" for the treatment of PWB globally. Hematoporphyrin monomethyl ether (HMME or hemoporfin)-mediated photodynamic therapy (HMME-PDT) has emerged as the first choice for PWB treatment, particularly for young children, in many major hospitals in China during the past several decades.AimTo evaluate whether HMME-PDT is superior to PDL by comparing the clinical efficacies of both modalities.MethodPubMed records were searched for all relevant studies of PWB treatment using PDL (1988-2023) or HMME-PDT (2007-2023). Patient characteristics and clinical efficacies were extracted. Studies with a quartile percentage clearance or similar scale were included. A mean color clearance index (CI) per study was calculated and compared among groups. An overall CI (C0 ), with data weighted by cohort size, was used to evaluate the final efficacy for each modality.ResultA total of 18 HMME-PDT studies with 3910 patients in China were eligible for inclusion in this analysis. Similarly, 40 PDL studies with 5094 patients from nine different countries were eligible for inclusion in this analysis. Over 58% of patients in the HMME-PDT studies were minors (
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- 2024
199. Down Syndrome Biobank Consortium: A perspective
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Aldecoa, Iban, Barroeta, Isabel, Carroll, Steven L, Fortea, Juan, Gilmore, Anah, Ginsberg, Stephen D, Guzman, Samuel J, Hamlett, Eric D, Head, Elizabeth, Perez, Sylvia E, Potter, Huntington, Molina‐Porcel, Laura, Raha‐Chowdhury, Ruma, Wisniewski, Thomas, Yong, William H, Zaman, Shahid, Ghosh, Sujay, Mufson, Elliott J, and Granholm, Ann‐Charlotte
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Biomedical and Clinical Sciences ,Biological Psychology ,Clinical Sciences ,Neurosciences ,Psychology ,Aging ,Acquired Cognitive Impairment ,Intellectual and Developmental Disabilities (IDD) ,Alzheimer's Disease ,Genetics ,Dementia ,Alzheimer's Disease including Alzheimer's Disease Related Dementias (AD/ADRD) ,Neurodegenerative ,Down Syndrome ,Clinical Research ,Brain Disorders ,2.1 Biological and endogenous factors ,Aetiology ,Congenital ,Neurological ,Good Health and Well Being ,Humans ,Biological Specimen Banks ,Alzheimer Disease ,Brain ,Europe ,Alzheimer's disease ,biobanking ,brain banking ,Down syndrome ,repository ,research ,Geriatrics ,Clinical sciences ,Biological psychology - Abstract
Individuals with Down syndrome (DS) have a partial or complete trisomy of chromosome 21, resulting in an increased risk for early-onset Alzheimer's disease (AD)-type dementia by early midlife. Despite ongoing clinical trials to treat late-onset AD, individuals with DS are often excluded. Furthermore, timely diagnosis or management is often not available. Of the genetic causes of AD, people with DS represent the largest cohort. Currently, there is a knowledge gap regarding the underlying neurobiological mechanisms of DS-related AD (DS-AD), partly due to limited access to well-characterized brain tissue and biomaterials for research. To address this challenge, we created an international consortium of brain banks focused on collecting and disseminating brain tissue from persons with DS throughout their lifespan, named the Down Syndrome Biobank Consortium (DSBC) consisting of 11 biobanking sites located in Europe, India, and the USA. This perspective describes the DSBC harmonized protocols and tissue dissemination goals.
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- 2024
200. Measurement bias in caregiver‐report of early childhood behavior problems across demographic factors in an ECHO‐wide diverse sample
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Zheng, Shuting, Mansolf, Maxwell, McGrath, Monica, Churchill, Marie L, Bekelman, Traci A, Brennan, Patricia A, Margolis, Amy E, Nozadi, Sara S, Bastain, Theresa M, Elliott, Amy J, LeWinn, Kaja Z, Hofheimer, Julie A, Leve, Leslie D, Rennie, Brandon, Zimmerman, Emily, Marable, Carmen A, McEvoy, Cindy T, Liu, Chang, Sullivan, Alexis, Woodruff, Tracey J, Ghosh, Samiran, Leventhal, Bennett, Ferrara, Assiamira, Lewis, Johnnye, Bishop, Somer, and Outcomes, Environmental influences on Child Health
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Psychology ,Social and Personality Psychology ,Applied and Developmental Psychology ,Health Disparities ,Minority Health ,Basic Behavioral and Social Science ,Mental Health ,Clinical Research ,Behavioral and Social Science ,Social Determinants of Health ,Pediatric ,Mental health ,Generic health relevance ,Quality Education ,behavior problems ,behavioral measures ,pre-school children ,psychometrics ,Environmental influences on Child Health Outcomes ,pre‐school children ,Clinical sciences ,Applied and developmental psychology - Abstract
BackgroundResearch and clinical practice rely heavily on caregiver-report measures, such as the Child Behavior Checklist 1.5-5 (CBCL/1.5-5), to gather information about early childhood behavior problems and to screen for child psychopathology. While studies have shown that demographic variables influence caregiver ratings of behavior problems, the extent to which the CBCL/1.5-5 functions equivalently at the item level across diverse samples is unknown.MethodsItem-level data of CBCL/1.5-5 from a large sample of young children (N = 9087) were drawn from 26 cohorts in the Environmental influences on Child Health Outcomes program. Factor analyses and the alignment method were applied to examine measurement invariance (MI) and differential item functioning (DIF) across child (age, sex, bilingual status, and neurodevelopmental disorders), and caregiver (sex, education level, household income level, depression, and language version administered) characteristics. Child race was examined in sensitivity analyses.ResultsItems with the most impactful DIF across child and caregiver groupings were identified for Internalizing, Externalizing, and Total Problems. The robust item sets, excluding the high DIF items, showed good reliability and high correlation with the original Internalizing and Total Problems scales, with lower reliability for Externalizing. Language version of CBCL administration, education level and sex of the caregiver respondent showed the most significant impact on MI, followed by child age. Sensitivity analyses revealed that child race has a unique impact on DIF over and above socioeconomic status.ConclusionsThe CBCL/1.5-5, a caregiver-report measure of early childhood behavior problems, showed bias across demographic groups. Robust item sets with less DIF can measure Internalizing and Total Problems equally as well as the full item sets, with slightly lower reliability for Externalizing, and can be crosswalked to the metric of the full item set, enabling calculation of normed T scores based on more robust item sets.
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- 2024
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