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Nowadays ε-caprolactone, the monomer of biodegradable polycaprolactone, is mainly produced via the strong exothermic Baeyer–Villiger oxidation of cyclohexanone in semi-batch reactors. In this work, the continuous synthesis of ε-caprolactone was conducted in a self-designed microreactor system to address its strong exothermic feature, resulting in a cyclohexanone conversion of 90.3% and an ε-caprolactone yield of 82.6%. Analysis using a liquid chromatography equipped with high resolution time-of-flight mass spectrometer suggested that the byproducts mainly consist of ε-caprolactone oligomers in the form of dimer, trimer, and tetramer. Such oligomers were produced via hydrolysis of ε-caprolactone, followed by esterification of the hydrolysis product, 6-hydroxyhexanoic acid. Kinetic studies suggest that the hydrolysis reaction orders for ε-caprolactone and water are 0.75 and 2.52, respectively, while dimerization of 6-hydroxyhexanoic acid is a zero-order reaction. The activation energies of the hydrolysis and dimerization were ~ 77.5 kJ·mol−1 and ~ 55.4 kJ·mol−1, respectively. Density functional theory calculations revealed the significant catalytic effect of acetic acid on both side reactions, where the dimerization of 6-hydroxyhexanoic acid proceeds through an alkoxy pathway. Highlights: • Continuous synthesis of ε-caprolactone was conducted in a microreactor to address its strong exothermic feature • Side reactions consist of hydrolysis of ε-caprolactone and oligomerization of 6-hydroxyhexanoic acid • Kinetic parameters were obtained and an alkoxy pathway was proposed for the dimerization of 6-hydroxyhexanoic acid [ABSTRACT FROM AUTHOR]

The interactions of glycosaminoglycans (GAG) with proteins of the extracellular matrix govern and regulate complex physiological functions including cellular growth, immune response, and inflammation. Repetitive presentation of GAG binding motifs, as found in native proteoglycans, might enhance GAG‐protein binding through multivalent interactions. Here, we report the chemical synthesis of dendritic GAG oligomers constructed of nonasulfated hyaluronan tetrasaccharides for investigating the binding of the protein chemokine interleukin 8 (IL‐8) to artificial, well‐defined proteoglycan architectures. Binding of mutant monomeric and native dimerizable IL‐8 was investigated by NMR spectroscopy and isothermal titration calorimetry. Dendritic oligomerization of GAG increased the binding affinity of both monomeric and dimeric IL‐8. Monomeric IL‐8 bound to monomeric and dimeric GAG with KD values of 7.3 and 0.108 μM, respectively. The effect was less pronounced for dimerizable wild‐type IL‐8, for which GAG dimerization improved the affinity from 34 to 5 nM. Binding of dimeric IL‐8 to oligomeric GAG was limited by steric crowding effects, strongly reducing the affinity of subsequent binding events. In conclusion, the strongest effect of GAG oligomerization was the amplified binding of IL‐8 monomers, which might concentrate monomeric protein in the extracellular matrix and thus promote protein dimerization under physiological conditions. [ABSTRACT FROM AUTHOR]

Transient homo-dimerization of the RAS GTPase at the plasma membrane has been shown to promote the mitogen-activated protein kinase (MAPK) signaling pathway essential for cell proliferation and oncogenesis. To date, numerous crystallographic studies have focused on the well-defined GTPase domains of RAS isoforms, which lack the disordered C-terminal membrane anchor, thus providing limited structural insight into membrane-bound RAS molecules. Recently, lipid-bilayer nanodisc platforms and paramagnetic relaxation enhancement (PRE) analyses have revealed several distinct structures of the membrane-anchored homodimers of KRAS, an isoform that is most frequently mutated in human cancers. The KRAS dimerization interface is highly plastic and altered by biologically relevant conditions, including oncogenic mutations, the nucleotide states of the protein, and the lipid composition. Notably, PRE-derived structures of KRAS homodimers on the membrane substantially differ in terms of the relative orientation of the protomers at an "α–α" dimer interface comprising two α4–α5 regions. This interface plasticity along with the altered orientations of KRAS on the membrane impact the accessibility of KRAS to downstream effectors and regulatory proteins. Further, nanodisc platforms used to drive KRAS dimerization can be used to screen potential anticancer drugs that target membrane-bound RAS dimers and probe their structural mechanism of action. [ABSTRACT FROM AUTHOR]

Arp2/3 complex nucleates branched actin filaments that drive membrane invagination during endocytosis and leadingedge protrusion in lamellipodia. Arp2/3 complex is maximally activated in vitro by binding of a WASP family protein to two sites--one on the Arp3 subunit and one spanning Arp2 and ARPC1--but the importance of each site in the regulation of force-producing actin networks is unclear. Here, we identify mutations in budding yeast Arp2/3 complex that decrease or block engagement of Las17, the budding yeast WASP, at each site. As in the mammalian system, both sites are required for maximal activation in vitro. Dimerization of Las17 partially restores activity of mutations at both CA-binding sites. Arp2/3 complexes defective at either site assemble force-producing actin networks in a bead motility assay, but their reduced activity hinders motility by decreasing actin assembly near the bead surface and by failing to suppress actin filament bundling within the networks. While even the most defective Las17-binding site mutants assembled actin filaments at endocytic sites, they showed significant internalization defects, potentially because they lack the proper architecture to drive plasma membrane remodeling. Together, our data indicate that both Las17-binding sites are important to assemble functional endocytic actin networks in budding yeast, but Arp2/3 complex retains some activity in vitro and in vivo even with a severe defect at either Las17-binding site. [ABSTRACT FROM AUTHOR]

This study aimed to develop an artificial neural network (ANN) capable of predicting the molar concentration of diisobutylene (DIB), 3, 4, 4-trimethyl-1-pentene (DIM), and tert-butyl alcohol (TBA) in the distillate and residue streams within three specific columns: reactive (CDC), high pressure (ADC), and low pressure (TDC). The process simulation was conducted using DWSIM, an open-source platform. Following its validation, a sensitivity analysis was performed to identify the operational variables that influenced the molar fraction of DIB, DIM, and TBA in the outputs of the three columns. The input variables included the molar fraction of isobutylene (IB) and 2-butene (2-Bu) in the butane (C4) feed, the temperature of the C4 and TBA feeds, and the operating pressure of the CDC, ADC, and TDC columns. The network's design, training, validation, and testing were performed in MATLAB using the Neural FittinG app. The network structure was based on the Bayesian regularization (BR) algorithm, that consisted of 7 inputs and seven outputs with 30 neurons in the hidden layer. The designed, trained, and validated ANN demonstrated a high performance, with a mean squared error (MSE) of 0.0008 and a linear regression coefficient (R) of 0.9946. The statistical validation using an analysis of variance (ANOVA) (p -value > 0.05) supported the ANN's capability to reliably predict molar fractions. Future research will focus on the in-situ validation of the predictions and explore hybrid technologies for energy and environmental optimization in the process. [ABSTRACT FROM AUTHOR]

Abstract Near‐infrared (NIR)‐II fluorescence imaging‐guided photothermal therapy (PTT) has attracted great research interest, and constructing donor‐acceptor (D‐A) electronic configurations has become an established approach to lower bandgap and realize NIR‐II emission. However, very few π‐conjugated phototheranostic agents can realize efficient NIR‐II guided PTT using a clinically safe laser power density, implying that sufficient photothermal performance is still desired. In addition to the continuously refreshed photothermal conversion efficiency levels, the strategies that focus on enhancing light absorptivity have been rarely discussed and endow a new direction for enhancing PTT. Herein, a dimerization π‐extension strategy is raised to synthesize π‐conjugated dimers with A‐D‐A monomers. We observe that the light absorptivity (ε) of the dimers is strengthened three times owing to the enhanced electronic coupling effect as a result of the π‐conjugation extension, thereby surpassing the 2‐fold increase in chromophore numbers from the monomer to dimers. Thanks to the enhancement in light absorption, the dimers could generate much more photothermal heat than the monomer in in vivo PTT treatments. Therefore, an efficient anti‐tumor outcome has been fulfilled by using dimers under a low laser power (0.3 W/cm2). Moreover, the dimers with extended π‐conjugation structures become more favorable to the radiative excited state decay, thus exhibiting a distinguishing improvement in NIR‐II imaging compared with monomer. Collectively, due to the improved light absorptivity, the dimers can gain superior NIR‐II fluorescence brightness and photothermal performance over the recently reported material, which goes beyond the monomer in double doses for in vivo applications. All these results prove that dimerization is an effective strategy for designing high‐performance phototheranostic materials.

This research investigated the antioxidant activities and quality characteristics of functional yogurt supplemented with naturally derived protein, specifically lysozyme (LZ), as well as its thermally modified variants PLZ treated at 63°C for 30 minutes (hold type pasteurization method) and BLZ treated at 100°C for 10 minutes (using boiling temperature). Among these variants, the best antioxidant capacity was reported for PLZ, followed by BLZ and LZ. Subsequently, different yogurt samples (YCtrl, YLZ, YPLZ, and YBLZ) were prepared. Through weekly assessments, YPLZ consistently retained the highest antioxidant capacity. Moreover, YPLZ received the highest sensory evaluation scores with the best microbiological quality until the end of the examination period up to 35 days at 4 ±1°C. It was noted that PLZ displayed increased surface hydrophobicity due to gradual thermal denaturation, leading to structural changes and weak cross-dimerization with native milk alpha-lactalbumin in YPLZ. Gel electrophoresis results suggested that proteolysis by lactic acid bacteria (LAB) could facilitate the formation of low-molecular-weight peptides with enhanced antioxidant stability via weak-force dimerization. In conclusion, yogurt fortified with lysozyme, processed using hold-type pasteurization, presents a promising avenue for developing functional yogurt with antioxidant properties.

In this work, we report evidence of pressure-induced changes in the crystal structure of Sr(IO3)2HIO3 connected to changes the coordination of the iodine atom and the of the configuration of HIO3 and IO3 units. The changes favor iodine hypercoordination and happen in two steps on sample compression. Firstly, at 2.5 GPa, [HIO3]·[IO3] complexes are formed, and secondly, at 4.5 GPa, these complexes form dimers of [HIO3]·[IO3]·[IO3]·[HIO3]. The evidence is obtained from a combined experimental and theoretical study performed up to 20 GPa. Synchrotron powder X-ray diffraction, Raman spectroscopy, and optical-absorption experiments have been complemented with density-functional theory calculations, including the study of the topology of the electron density. The changes observed in the crystal structure are related to the transformation of secondary (halogen) bonds into electron-deficient multicenter bonds. The paper also discusses the effect of pressure on the compressibility of the Sr(IO3)2HIO3 crystal structure, its phonons, the electronic band gap, and the refractive index. Sr(IO3)2HIO3 was found to be highly compressible with an anisotropic compressibility. The softening of the internal I–O vibrations of IO3 units was also observed, together with a decrease of the band-gap energy (from 4.1 eV at 0 GPa to 3.7 eV at 20 GPa), a band-gap crossing, and a change in the topology of the band structure, with Sr(IO3)2HIO3 transforming from a direct gap semiconductor at 0 GPa to an indirect gap semiconductor beyond 6 GPa.

The 20S proteasome core particle (CP) is a molecular machine that is a key component of cellular protein degradation pathways. Like other molecular machines, it is not synthesized in an active form but rather as a set of subunits that assemble into a functional complex. The CP is conserved across all domains of life and is composed of 28 subunits, 14 α and 14 β, arranged in four stacked seven-member rings (α7β7β7α7). While details of CP assembly vary across species, the final step in the assembly process is universally conserved: two half proteasomes (HPs; α7β7) dimerize to form the CP. In the bacterium Rhodococcus erythropolis, experiments have shown that the formation of the HP is completed within minutes, while the dimerization process takes hours. The N-terminal propeptide of the β subunit, which is autocatalytically cleaved off after CP formation, plays a key role in regulating this separation of timescales. However, the detailed molecular mechanism of how the propeptide achieves this regulation is unclear. In this work, we used molecular dynamics simulations to characterize HP conformations and found that the HP exists in two states: one where the propeptide interacts with key residues in the HP dimerization interface and likely blocks dimerization, and one where this interface is free. Furthermore, we found that a propeptide mutant that dimerizes extremely slowly is essentially always in the nondimerizable state, while the wild-type rapidly transitions between the two. Based on these simulations, we designed a propeptide mutant that favored the dimerizable state in molecular dynamics simulations. In vitro assembly experiments confirmed that this mutant dimerizes significantly faster than wild-type. Our work thus provides unprecedented insight into how this critical step in CP assembly is regulated, with implications both for efforts to inhibit proteasome assembly and for the evolution of hierarchical assembly pathways.

Fullerene dimerization inside a peapod is analyzed at DFT level by characterizing the stationary points and deriving the energy profile of the initial and reversible process named phase 1. We find that the barriers for the radical cation mechanism are significantly lower than those found for the neutral pathway. The peapod is mainly providing one-dimensional confinement for the reaction to take place in a more efficient way. Car–Parrinello metadynamics simulations provide hints on structures for the initial steps of the irreversible phase 2 where bond formation and breaking lead to important structural reorganizations within the coalescence process.

Polyampholytes (PAs) exhibit complex behaviors in various environments influenced by their charge distribution. This study focuses on the kinetics of dimerization of PAs, aiming to elucidate the underlying mechanisms and clarify relevant characteristics of the charge sequence. We focus on PAs with non-zero net charges, employing molecular dynamics simulations and theoretical analyses to examine how charge sequences influence the rates of dimer formation and dissociation. Our findings reveal that the charge sequence of tails and the blockiness of the minority charge group markedly influence the kinetics of dimerization: large blockiness and tails with a high number of majority-type charges slow down the dissociation of dimers. Additionally, the presence of an extended (central) block of the majority charge promotes structural diversity. Within dimer states, blocks alternate between intra- and inter-chain contacts. The duration times in the dimer states are significantly longer than the typical dwell times of block inter-contacts, with a notable extension when multiple blocks are engaged. Intrinsically disordered proteins (IDPs) play crucial roles in cellular functions, primarily due to their ability to undergo rapid conformational changes and form transient complexes. These properties largely depend on the sequence of charged residues. We provide insights into the fundamental principles governing the structural and dynamical properties of polyampholytic IDP, emphasizing the importance of sequence-specific effects on both aggregation and dissociation.

Oleanolic acid, a naturally occurring triterpenoid compound, has garnered significant attention in the scientific community due to its diverse pharmacological properties. Continuing our previous work on the synthesis of oleanolic acid dimers (OADs), a simple, economical, and safe acetylation reaction was performed. The newly obtained derivatives (AcOADs, 3a–3n) were purified using two methods. The structures of all acetylated dimers (3a–3n) were determined based on spectral methods (IR, NMR). For all AcOADs (3a–3n), the relationship between the structure and the expected directions of pharmacological activity was determined using a computational method (QSAR computational analysis). All dimers were also tested for their cytotoxic activity on the SKBR-3, SKOV-3, PC-3, and U-87 cancer cell lines. HDF cell line was applied to evaluate the Selectivity Index of the tested compounds. All cytotoxic tests were performed with the application of the MTT assay. Finally, all dimers of oleanolic acid were subjected to DPPH and CUPRAC tests to evaluate their antioxidant activity. The obtained results indicate a very high level of cytotoxic activity (IC50 for most AcOADs below 5.00 µM) and a fairly high level of antioxidant activity (Trolox equivalent in some cases above 0.04 mg/mL).

The dimerization of molecules in helium nanodroplets is known to preferentially yield structures of higher energy than the global energy minimum structure for a number of quite different monomers. Here, we explore dimerization in this environment using an atomistic model within statistically converged molecular dynamics (MD) trajectories, treating the solvent implicitly through the use of a thermostat, or more explicitly by embedding one monomer in a He100 cluster. The focus is on the two simplest carboxylic acids, formic and acetic, both of which have been studied experimentally. While the global minimum structure, which comprises two CO⋯HO hydrogen bonds, is predicted to be the most abundant dimer in the absence of the helium solvent, this is no longer the case once helium atoms are included. The simulations confirm the importance of kinetic trapping effects and also shed light on the occurrence of specific dynamical effects, leading to the occasional formation of high-energy structures away from minima, such as saddle configurations. Theoretically predicted infrared spectra, based on the MD statistics, are in good agreement with the experimental spectra. [ABSTRACT FROM AUTHOR]

Dimerization of polycyclic aromatic hydrocarbons (PAHs) is an important, yet poorly understood, step in the on-surface synthesis of graphene (nanoribbon), soot formation, and growth of carbonaceous dust grains in the interstellar medium (ISM). The on-surface synthesis of graphene and the growth of carbonaceous dust grains in the ISM require the chemical dimerization in which chemical bonds are formed between PAH monomers. An accurate and cheap method of exploring structure rearrangements is needed to reveal the mechanism of chemical dimerization on surfaces. This work has investigated the chemical dimerization of two dehydrogenated PAHs (coronene and pentacene) on graphene via an evolutionary algorithm augmented by machine learning surrogate potentials and a set of customized structure operators. Different dimer structures on surfaces have been successfully located by our structure search methods. Their binding energies are within the experimental errors of temperature programmed desorption measurements. The mechanism of coronene dimer formation on graphene is further studied and discussed. [ABSTRACT FROM AUTHOR]

Cadherins are essential cell-cell adhesion proteins that interact in two distinct conformations: X-dimers and strand-swap dimers. Both X-dimers and strand-swap dimers are thought to exclusively rely on symmetric sets of interactions between key amino acids on both cadherin binding partners. Here, we use single-molecule atomic force microscopy and computer simulations to show that symmetry in cadherin binding is dispensable and that cadherins can also interact in a novel conformation that asymmetrically incorporates key elements of both strand-swap dimers and X-dimers. Our results clarify the biophysical rules for cadherin binding and demonstrate that cadherins interact in a more diverse range of conformations than previously understood.

We propose the replica permutation with solute tempering (RPST) by combining the replica-permutation method (RPM) and the replica exchange with solute tempering (REST). Temperature permutations are performed among more than two replicas in RPM, whereas temperature exchanges are performed between two replicas in the replica-exchange method (REM). The temperature transition in RPM occurs more efficiently than in REM. In REST, only the temperatures of the solute region, the solute temperatures, are exchanged to reduce the number of replicas compared to REM. Therefore, RPST is expected to be an improved method taking advantage of these methods. For comparison, we applied RPST, REST, RPM, and REM to two amyloid-β(16–22) peptides in explicit water. We calculated the transition ratio and the number of tunneling events in the temperature space and the number of dimerization events of amyloid-β(16–22) peptides. The results indicate that, in RPST, the number of replicas necessary for frequent random walks in the temperature and conformational spaces is reduced compared to the other three methods. In addition, we focused on the dimerization process of amyloid-β(16–22) peptides. The RPST simulation with a relatively small number of replicas shows that the two amyloid-β(16–22) peptides form the intermolecular antiparallel β-bridges due to the hydrophilic side-chain contact between Lys and Glu and hydrophobic side-chain contact between Leu, Val, and Phe, which stabilizes the dimer of the peptides. [ABSTRACT FROM AUTHOR]

Familial exudative vitreoretinopathy (FEVR) is a hereditary eye disease that could cause blindness. It has been established that Norrin forms dimers to activate β‐catenin signaling, yet the core interface for Norrin dimerization and the precise mechanism by which Norrin dimerization contributes to the pathogenesis of FEVR remain elusive. Here, we report an NDP variant, c.265T>C (p.Phe89Leu), that interrupted β‐catenin signaling by disrupting Norrin dimerization. Structural and functional analysis revealed that the Phe‐89 of one Norrin monomer interacts with Pro‐98, Ser‐101, Arg‐121, and Ile‐123 of another, forming two core symmetrical dimerization interfaces that are pivotal for the formation of a "hand‐by‐arm" dimer. Intriguingly, we proved that one of the two core symmetrical interfaces is sufficient for dimerization and activation of β‐catenin signaling, with a substantial contribution from the Phe‐89/Pro‐98 interaction. Further functional analysis revealed that the disruption of both dimeric interfaces eliminates potential binding sites for LRP5, which could be partially restored by over‐expression of TSPAN12. In conclusion, our findings unveil a core dimerization interface that regulates Norrin/LRP5 interaction, highlighting the essential role of Norrin dimerization on β‐catenin signaling and providing potential therapeutic avenues for the treatment of FEVR. [ABSTRACT FROM AUTHOR]

Zinc(II) Schiff base complexes with different substituents at 5, 5' positions have been synthesized to study the effect of the electronic environment of the metal towards the cycloaddition reaction between CO2 and epoxide. The complexes have been characterized by FT‐IR, XPS, NMR, electronic spectroscopy, LC–MS, and TGA. We have used density functional theory to study the electronic structure of the Zn(II) complexes and modelled the electronic spectra and the mechanism of catalysis. Results obtained from DFT and LC–MS indicate the dimeric structures for all the complexes except ZnL4. The monomeric ZnL4 has the strongest electron withdrawing group, i. e. −NO2 at 5, 5' positions along with two labile water molecules attached to the Zn center. The dimeric complexes exhibit good to moderate yield for cycloaddition reaction to styrene carbonate under solvent‐free conditions and a relatively low reaction temperature of 80 °C, with CO2 pressure of ~1 atm. The best yield has been achieved by ZnL4. Different rate‐determining steps are captured by the DFT studies for dimeric and monomeric complexes. Without taking any preventing measure of dimerization by attaching the bulky tBu groups, relatively lesser catalytic amounts of all the complexes have shown yields of cyclic carbonate between 53–74 %, depending on the nature of the substituent present. [ABSTRACT FROM AUTHOR]

Cucurbit[7,8]urils are known to form inclusion complexes with hydrophobic amino acids such as Trp, Tyr, Phe, and Met, as well as peptides containing these residues at the N‐terminus. Despite their widespread use in protein purification, the affinity of histidine (His) for cucurbit[7,8]urils has not been extensively explored. In this study, X‐ray diffraction experiments were conducted to investigate the binding of two histidine moieties to the cucurbit[7]uril (CB7) cavity, resulting in a network of π–π and hydrogen bonds. This assembly was found to induce a His pKa shift of ΔpKa=−4. Histidine weakly bound to CB7 or CB8; however, isothermal titration calorimetry revealed micromolar equilibrium dissociation constant values for CB7 and CB8 when bound to dipeptides containing His at the C‐terminus. Conversely, dipeptides with His at the N‐terminus exhibited millimolar values. Additionally, the His‐Gly‐Gly tripeptide formed a 2 : 1 complex with CB7. These findings suggest the potential use of histidine and histidine‐containing tags in conjunction with CB7 for various biological applications. [ABSTRACT FROM AUTHOR]

The dynamin-related human guanylate-binding protein 1 (GBP1) mediates host defenses against microbial pathogens. Upon GTP binding and hydrolysis, auto-inhibited GBP1 monomers dimerize and assemble into soluble and membrane-bound oligomers, which are crucial for innate immune responses. How higher-order GBP1 oligomers are built from dimers, and how assembly is coordinated with nucleotide-dependent conformational changes, has remained elusive. Here, we present cryo-electron microscopy-based structural data of soluble and membrane-bound GBP1 oligomers, which show that GBP1 assembles in an outstretched dimeric conformation. We identify a surface-exposed helix in the large GTPase domain that contributes to the oligomerization interface, and we probe its nucleotide- and dimerization-dependent movements that facilitate the formation of an antimicrobial protein coat on a gram-negative bacterial pathogen. Our results reveal a sophisticated activation mechanism for GBP1, in which nucleotide-dependent structural changes coordinate dimerization, oligomerization, and membrane binding to allow encapsulation of pathogens within an antimicrobial protein coat. Synopsis: Oligomerization of the human guanylate-binding protein 1 (GBP1) mediates innate immune responses against bacterial pathogens. Here, structural analyses combined with biochemical experiments explain how nucleotide-dependent structural changes coordinate GBP1 oligomerization toward the formation of an antimicrobial protein coat. Cryo-EM shows that GBP1 assembles in an outstretched dimeric conformation to form soluble polymers and membrane-bound oligomers. The peripheral helix α4' in the large GTPase domain is critical for establishing the oligomeric interface. Nucleotide-dependent structural changes coordinate GBP1 oligomerization and membrane binding to allow encapsulation of pathogens. GBP1 oligomerization and membrane binding are coordinated by nucleotide-dependent structural changes, facilitating the formation of a protein coat around bacteria. [ABSTRACT FROM AUTHOR]

The present work explores the potential for observing multiple reentrant localization behavior in a double-stranded helical (DSH) system, extending beyond the conventional nearest-neighbor hopping (NNH) interaction. The DSH system is considered to have hopping dimerization in each strand, while also being subjected to a transverse electric field. The inclusion of an electric field serves the dual purpose of inducing quasi-periodic disorder and strand-wise staggered site energies. Two reentrant localization regions are identified: one exhibiting true extended behavior in the thermodynamic limit, while the second region shows quasi-extended characteristics with partial spreading within the helix. The DSH system exhibits three distinct single-particle mobility edges linked to localization transitions present in the system. The analysis in this study involves examining various parameters such as the single-particle energy spectrum, inverse participation ratio, local probability amplitude, and more. Our proposal, combining achievable hopping dimerization and induced correlated disorder, presents a unique opportunity to study phenomenon of reentrant localization, generating significant research interest. [ABSTRACT FROM AUTHOR]

The Escherichia coli pyruvate dehydrogenase complex (PDHc) is a ~5 MDa assembly of the catalytic subunits pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2), and dihydrolipoamide dehydrogenase (E3). The PDHc core is a cubic complex of eight E2 homotrimers. Homodimers of the peripheral subunits E1 and E3 associate with the core by binding to the peripheral subunit binding domain (PSBD) of E2. Previous reports indicated that 12 E1 dimers and 6 E3 dimers bind to the 24-meric E2 core. Using an assembly arrested E2 homotrimer (E23), we show that two of the three PSBDs in the E23 dimerize, that each PSBD dimer cooperatively binds two E1 dimers, and that E3 dimers only bind to the unpaired PSBD in E23. This mechanism is preserved in wild-type PDHc, with an E1 dimer:E2 monomer:E3 dimer stoichiometry of 16:24:8. The conserved PSBD dimer interface indicates that PSBD dimerization is the previously unrecognized architectural determinant of gammaproteobacterial PDHc megacomplexes. [ABSTRACT FROM AUTHOR]

It has been shown in tests that N-heteroaryl-substituted α-diphenylphosphinoglycines, namely, N-(pyrazin-2-yl) α-diphenylphosphinoglycine, N-(pyridin-2-yl) α-diphenylphosphinoglycine, and N‑(pyrimidin-2-yl) α-diphenylphosphinoglycine, which are synthesized by the three-component condensation of diphenylphosphine, the respective primary amine, and glyoxylic acid monohydrate, being combined with Ni(COD)2, where COD is cyclooctadiene-1,5, are capable of generating active forms of catalysts for the selective homogeneous dimerization and trimerization of ethylene to form butene-1 and hexene-1 as the main products. The studied organonichel catalyst systems provide a yield of short-chain (C4–C6) olefins at a level of 90% with a linear α-olefin selectivity of 97%. Studies of the effect of temperature on the homogeneous oligomerization of ethylene using the synthesized compounds have revealed that the process run at an optimum temperature of 80–105°C and an optimum ethylene pressure of 20–35 atm provides the highest butene-1 and hexene-1 selectivity. Under these conditions, the butene selectivity is recorded at a level of 71.4–72.6% (butene-1 selectivity of 69.3–71.1%), while the hexene selectivity is 20.6–21.2% (hexene-1 selectivity of 19.2–19.5%). The optimum duration of the oligomerization process at a temperature of 105°C is 1.5 h. The butene-1 and hexene-1 formation rate is 168.1 and 47.3 golig h–1, respectively. [ABSTRACT FROM AUTHOR]

Kagome lattices represent an archetype of intriguing physics, attracting a great deal of interest in different branches of natural sciences, recently in the context of topological crystalline insulators. Here, two distinct classes of corner states in breathing Kagome lattices (BKLs) with "bearded" edge truncation are demonstrated, unveiling their topological origin. The in‐phase corner states are found to exist only in the topologically nontrivial regime, characterized by a nonzero bulk polarization. In contrast, the out‐of‐phase corner states appear in both topologically trivial and nontrivial regimes, either as bound states in the continuum or as in‐gap states depending on the lattice dimerization conditions. Furthermore, the out‐of‐phase corner states are highly localized, akin to flat‐band compact localized states, and they manifest both real‐ and momentum‐space topology. Experimentally, both types of corner states are observed in laser‐written photonic bearded‐edge BKLs, corroborated by numerical simulations. The results not only deepen the current understanding of topological corner modes in BKLs but also provide new insight into their physical origins, which may be applied to other topological BKL platforms beyond optics. [ABSTRACT FROM AUTHOR]

The hexacyano[3]radialene radical anion (1) is an attractive catholyte material for use in redox flow battery (RFB) applications. The substitution of cyano groups with ester moieties enhances solubility while maintaining redox reversibility and favorable redox potentials. Here we show that these ester‐functionalized, hexasubstituted [3]radialene radical anions dimerize reversibly in water. The dimerization mode is dependent on the substitution pattern and can be switched in solution. Stimuli‐responsive behavior is achieved by exploiting an unprecedented tristate switching mechanism, wherein the radical can be toggled between the free radical, a π‐dimer, and a σ‐dimer‐each with dramatically different optical, magnetic, and redox properties‐by changing the solvent environment, temperature, or salinity. The symmetric, triester‐tricyano[3]radialene (3) forms a solvent‐responsive, σ‐dimer in water that converts to the radical anion with the addition of organic solvents or to a π‐dimer in brine solutions. Diester‐tetracyano[3]radialene (2) exists primarily as a π‐dimer in aqueous solutions and a radical anion in organic solvents. The dimerization behavior of both 2 and 3 is temperature dependent in methanol solutions. Dimerization equilibrium has a direct impact on catholyte stability during galvanostatic charge–discharge cycling in static H‐cells. Specifically, conditions that favor the free radical anion or π‐dimer exhibit significantly enhanced cycling profiles. [ABSTRACT FROM AUTHOR]

Toll-like receptor 2 (TLR2) is a major membrane-bound receptor with ligand and species specificity that activates the host immune response. Heterodimerization of TLR2 with TLR1 (TLR2/1) or TLR6 (TLR2/6), triggered by ligand binding, is essential to initiating the signaling pathway. Bovine TLR2 (bTLR2) heterodimerization has not been defined yet compared with human and mouse TLR2s (hTLR2 and mTLR2). The aim of the present study was to model bovine TLRs (TLRs 1, 2 and 6) and create the heterodimeric forms of the bovine TLR2 using molecular dynamics (MD) simulations. We compared the intermolecular interactions in bTLR2/1-PAM3 and bTLR2/6-PAM2 with the hTLR2 and mTLR2 complexes through docking simulations and subsequent MD analyses. The present computational findings showed that bTLR2 dimerization could have a biological function and activate the immune response, similar to hTLR2 and mTLR2. Agonists and antagonists that are designed for hTLR2 and mTLR2 can target bTLR2. However, the experimental approaches to comparing the functional immune response of TLR2 across species were missing in the present study. This computational study provides a structural analysis of the bTLR2 interaction with bTLR1 and bTLR6 in the presence of an agonist/antagonist and reveals the three-dimensional structure of bTLR2 dimerization. The present findings could guide future experimental studies targeting bTLR2 with different ligands and lipopeptides. [ABSTRACT FROM AUTHOR]

The transcriptional co-activator lens epithelium-derived growth factor/p75 (LEDGF/p75) plays an important role in the biology of the cell and in several human diseases, including MLL-rearranged acute leukemia, autoimmunity, and HIV-1 infection. In both health and disease, LEDGF/p75 functions as a chromatin tether that interacts with proteins such as MLL1 and HIV-1 integrase via its integrase-binding domain (IBD) and with chromatin through its N-terminal PWWP domain. Recently, dimerization of LEDGF/p75 was shown, mediated by a network of electrostatic contacts between amino acids from the IBD and the C-terminal α6-helix. Here, we investigated the functional impact of LEDGF/p75 variants on the dimerization using biochemical and cellular interaction assays. The data demonstrate that the C-terminal α6-helix folds back in cis on the IBD of monomeric LEDGF/p75. We discovered that the presence of DNA stimulates LEDGF/p75 dimerization. LEDGF/p75 dimerization enhances binding to MLL1 but not to HIV-1 integrase, a finding that was observed in vitro and validated in cell culture. Whereas HIV-1 replication was not dependent on LEDGF/p75 dimerization, colony formation of MLLr-dependent human leukemic THP-1 cells was. In conclusion, our data indicate that intricate changes in the quaternary structure of LEDGF/p75 modulate its tethering function. [ABSTRACT FROM AUTHOR]

The spectral properties of a non‐Hermitian quasi‐1D lattice in two of the possible dimerization configurations are investigated. Specifically, it focuses on a non‐Hermitian diamond chain that presents a zero‐energy flat band. The flat band originates from wave interference and results in eigenstates with a finite contribution only on two sites of the unit cell. To achieve the non‐Hermitian characteristics, the system under study presents non‐reciprocal hopping terms in the chain. This leads to the accumulation of eigenstates on the boundary of the system, known as the non‐Hermitian skin effect. Despite this accumulation of eigenstates, for one of the two considered configurations, it is possible to characterize the presence of non‐trivial edge states at zero energy by a real‐space topological invariant known as the biorthogonal polarization. This work shows that this invariant, evaluated using the destructive interference method, characterizes the non‐trivial phase of the non‐Hermitian diamond chain. For the second non‐Hermitian configuration, there is a finite quantum metric associated with the flat band. Additionally, the system presents the skin effect despite the system having a purely real or imaginary spectrum. The two non‐Hermitian diamond chains can be mapped into two models of the Su‐Schrieffer‐Heeger chains, either non‐Hermitian, and Hermitian, both in the presence of a flat band. This mapping allows to draw valuable insights into the behavior and properties of these systems. [ABSTRACT FROM AUTHOR]

The electrochemical reduction mechanism of nitrosobenzene in acetonitrile was reconsidered in this work. The commonly accepted mechanism assumes that the nitrosobenzene radical anion dimerize to yield a dianion, which decompose into azoxybenzene as the reduction product. Even though this proposal is consistent with preparative experiments, it does not reproduce fully the experimental voltammetric behaviour when it is simulated. Also, It does not explain why the apparent electron number is different in the time scale of cyclic voltammetry and preparative electrolysis. To understand these discrepancies, it was proposed the intervention of reactions consuming part of the starting nitrosobenzene, which allowed to reconsider the role of alternative chemical reactions like that occurring between the anion of phenylhydroxylamine with nitrosobenzene and the hydroxyl ion with nitrosobenzene. In this framework, these concomitant reactions were additionally included in the mechanism to simulate the voltammetric behaviour at different scan rates. Thermodynamic and kinetic parameters of the extended mechanism are reported. Since in the hydroxyl ion is either product or reactive in some reaction steps, the global mechanism was deemed to occurs as a kind of loop. [ABSTRACT FROM AUTHOR]

The study proposes a novel approach for the synthesis of granular MCM-22 zeolite with a hierarchical micro–meso–macroporous structure. This approach is based on the crystallization of zeolite granules consisting of powdered MCM-22 and synthetic amorphous aluminosilicate. The synthesized material had 97% crystallinity and volumes of micro-, meso-, and macropores of 0.18, 0.22, and 0.46 cm3/g, respectively. The H-form of the hierarchical MCM-22 exhibited high activity and selectivity in dimerization of α-methylstyrene. [ABSTRACT FROM AUTHOR]

Li-CO2 batteries offer a promising avenue for converting greenhouse gases into electricity. However, the inherent challenge of direct electrocatalytic reduction of inert CO2 often results in the formation of Li2CO3, causing a dip in output voltage and energy efficiency. Our innovative approach involves solid redox mediators, affixed to the cathode via a Cu(II) coordination compound of benzene-1,3,5-tricarboxylic acid. This technique effectively circumvents the shuttle effect and sluggish kinetics associated with soluble redox mediators. Results show that the electrochemically reduced Cu(I) solid redox mediator efficiently captures CO2, facilitating Li2C2O4 formation through a dimerization reaction involving a dimeric oxalate intermediate. The Li-CO2 battery employing the Cu(II) solid redox mediator boasts a higher discharge voltage of 2.8 V, a lower charge potential of 3.7 V, and superior cycling performance over 400 cycles. Simultaneously, the successful development of a Li-CO2 pouch battery propels metal-CO2 batteries closer to practical application. Li–CO2 batteries following Li2CO3-product route suffers from low output voltage and severe parasitic reactions. Here, the authors introduce a copper-based solid redox mediator in Li–CO2 batteries with an efficient Li2C2O4 product route to circumvent the shuttle effect and sluggish kinetics caused by soluble mediators. [ABSTRACT FROM AUTHOR]

The excision and replication, thus the life cycle of pathogenicity islands in staphylococci are regulated by Stl master repressors that form strong dimers. It has been recently shown that SaPIbov1-Stl dimers are separated during the activation of the Staphylococcus aureus pathogenicity island (SaPI) transcription via helper phage proteins. To understand the mechanism of this regulation, a quantitative analysis of the dimerization characteristics is required. Due to the highly efficient dimerization process, such an analysis has to involve specific solutions that permit relevant experiments to be performed. In the present work, we focused on two staphylococcal Stls associated with high biomedical interest, namely Stl proteins of Staphylococcus aureus bov1 and Staphylococcus hominis ShoCI794_SEPI pathogenicity islands. Exploiting the interactions of these two Stl proteins with their antirepressor-mimicking interaction partners allowed precise determination of the Stl dimerization constant in the subnanomolar range. [ABSTRACT FROM AUTHOR]

We report the oxidative dimerization reaction of siloxydienes derived from simple enones that creates a new gamma‐gamma (γ‐γ) C−C bond using catalytic iron and benzoyl peroxide as the terminal oxidant in acetonitrile solvent at ambient temperature. The reaction shows a broad substrate scope including cyclic and acyclic siloxydienes derived from ketones, aldehydes, and esters, which are converted to 1,8‐dicarbonyl compounds under mild catalytic reaction conditions in 19–89 % yield across 30 examples. The method is suitable for the coupling of sterically demanding carbon centers, including the formation of vicinal quaternary centers. Conceptually, the dienol ether serves as a precursor to a conjugated radical cation, which undergoes highly site selective γ‐dimerization reactions. The γ‐γ dimerization strategy is applied to the synthesis of a bioactive analogue of honokiol. [ABSTRACT FROM AUTHOR]

Fibroblast growth factor 2 (FGF2) exits cells by direct translocation across the plasma membrane, a type I pathway of unconventional protein secretion. This process is initiated by phosphatidylinositol-4,5-bisphosphate (PI(4,5)P2)-dependent formation of highly dynamic FGF2 oligomers at the inner plasma membrane leaflet, inducing the formation of lipidic membrane pores. Cell surface heparan sulfate chains linked to glypican-1 (GPC1) capture FGF2 at the outer plasma membrane leaflet, completing FGF2 membrane translocation into the extracellular space. While the basic steps of this pathway are well understood, the molecular mechanism by which FGF2 oligomerizes on membrane surfaces remains unclear. In the current study, we demonstrate the initial step of this process to depend on C95-C95 disulfide-bridge-mediated FGF2 dimerization on membrane surfaces, producing the building blocks for higher FGF2 oligomers that drive the formation of membrane pores. We find FGF2 with a C95A substitution to be defective in oligomerization, pore formation, and membrane translocation. Consistently, we demonstrate a C95A variant of FGF2 to be characterized by a severe secretion phenotype. By contrast, while also important for efficient FGF2 secretion from cells, a second cysteine residue on the molecular surface of FGF2 (C77) is not involved in FGF2 oligomerization. Rather, we find C77 to be part of the interaction interface through which FGF2 binds to the α1 subunit of the Na,K-ATPase, the landing platform for FGF2 at the inner plasma membrane leaflet. Using cross-linking mass spectrometry, atomistic molecular dynamics simulations combined with a machine learning analysis and cryo-electron tomography, we propose a mechanism by which disulfide-bridged FGF2 dimers bind with high avidity to PI(4,5)P2 on membrane surfaces. We further propose a tight coupling between FGF2 secretion and the formation of ternary signaling complexes on cell surfaces, hypothesizing that C95-C95-bridged FGF2 dimers are functioning as the molecular units triggering autocrine and paracrine FGF2 signaling. [ABSTRACT FROM AUTHOR]

The different behaviors of the drug amifampridine (AMP) against Mn(II), Cu(II), Zn(II) and Cd(II) metal ions, in the presence and absence of tris(2-aminoethyl)amine (tren) was studied. The results showed that AMP successfully coordinates with Cu(II), Zn(II) and Cd(II) metal ions, but interestingly it undergoes an unexpected dimerization through a C–H activation in the presence of different Mn(II) salts. A four-coordinate complex of zinc(II), [Zn(AMP)2Cl2] (1), a binuclear complex of cadmium(II), [Cd2(AMP)2Cl4] (2), three five-coordinate tren-based metal complexes, [Cu(tren)(AMP)](ClO4)2 (8), [Zn(tren)(AMP)]Cl2 (9) and [Cd(tren)(AMP)](ClO4)2 (10), three pyridinium salts, [AmpDimer]X (X = Cl−, NO3−, ClO4−; (3, 4 & 5)), and also two four-coordinate metal complexes with this pyridinium cation, [Zn(AmpDimer)Cl3] (6) and [Cd(AmpDimer)Cl3] (7), were synthesized. All new compounds were characterized by elemental analysis and IR spectroscopy, and by 1H- and 13C-NMR spectroscopy (for 1, 2, 3, 6, 7, 9 & 10) and by X-ray crystal structure determinations (for 1, 3, 4, 5, 7, 8 & 10). Theoretical studies showed that the [M(tren)(AMP)]2+ cations act as pH-sensitive drug carriers of AMP and release it upon protonation. The molecular docking studies on the interaction of AMP and the above complexes/salts with DNA and the proteins of SARS-CoV-2 showed that the synthesized complexes/salts have greater anticancer and anti-covid-19 activities than AMP alone. [ABSTRACT FROM AUTHOR]

The oxidation of 10,15‐diaryl‐21‐carba‐23‐selenaporphyrinoids resulted in the creation of dyads. The dimerization process follows a [5+2] cycloaddition path with the formation of an azepine unit. The arrays display two direct bonds between the peripheral carbocyclic carbon atoms of one carbaselenaporphyrinic subunit and the central carbon and nitrogen atoms of the second subunit. This results in a unique canted arrangement of two carbaporphyrinoid planes resembling an open seashell‐like motif. [ABSTRACT FROM AUTHOR]

Dimers and oligomers of alkenes represent a category of compounds that are in great demand in diverse industrial sectors. Among the developing synthetic methods, the catalysis of alkene dimerization and oligomerization using transition metal salts and complexes is of undoubted interest for practical applications. This approach demonstrates substantial potential, offering not only elevated reaction rates but also precise control over the chemo-, regio-, and stereoselectivity of the reactions. In this review, we discuss the data on catalytic systems for alkene dimerization and oligomerization. Our focus lies in the analysis of how the activity and chemoselectivity of these catalytic systems are influenced by various factors, such as the nature of the transition metal, the ligand environment, the activator, and the substrate structure. Notably, this review particularly discusses reaction mechanisms, encompassing metal complex activation, structural and dynamic features, and the reactivity of hydride intermediates, which serve as potential catalytically active centers in alkene dimerization and oligomerization. [ABSTRACT FROM AUTHOR]

Ethylene insertion into the Ga–Ge bond of the L(Cl)Ga-substituted germylene LGa(μ-Cl)GeDMP 1 (L = HC(C(Me)NAr)2, Ar = 2,6-iPr2C6H3; DMP = 2,6-Mes2C6H3, Mes = 2,4,6-Me3C6H2) at ambient temperature is followed by dimerization of the as-formed germylene to give the digermene 3, which further reacted with ethylene in a [2 + 2] cycloaddition to give the 1,2-digermacyclobutane 4. In marked contrast, the amino-substituted germylene L(Cl)GaGeN(SiMe3)Ar 2 reacted directly to the 1,2-digermacyclobutane 5. Quantum chemical calculations confirmed the assumed reaction mechanism, hence demonstrating the crucial role of the substituent on the reaction mechanism. [ABSTRACT FROM AUTHOR]

Kinesin-3 is a family of microtubule-dependent motor proteins that transport various cargos within the cell. However, the mechanism underlying kinesin-3 activations remains largely elusive. In this study, we compared the biochemical properties of two Caenorhabditis elegans kinesin-3 family proteins, KLP-6 and UNC-104. Both KLP-6 and UNC-104 are predominantly monomeric in solution. As previously shown for UNC-104, non-processive KLP-6 monomer is converted to a processive motor when artificially dimerized. We present evidence that releasing the autoinhibition is sufficient to trigger dimerization of monomeric UNC-104 at nanomolar concentrations, which results in processive movement of UNC-104 on microtubules, although it has long been thought that enrichment in the phospholipid microdomain on cargo vesicles is required for the dimerization and processive movement of UNC-104. In contrast, KLP-6 remains to be a non-processive monomer even when its autoinhibition is unlocked, suggesting a requirement of other factors for full activation. By examining the differences between KLP-6 and UNC-104, we identified a coiled-coil domain called coiled-coil 2 (CC2) that is required for the efficient dimerization and processive movement of UNC-104. Our results suggest a common activation mechanism for kinesin-3 family members, while also highlighting their diversification. [ABSTRACT FROM AUTHOR]

Cr-catalyzed ionic liquid-organic biphasic ethylene dimerization was realized with 100% 1-butene selectivity. The perfect α-olefin selectivity can be rationalized in terms of the poor solubility of the oligomerized long-chain olefins in ionic liquids, and enables the establishment of a dimerization process without any complicated and energy-intensive catalyst and byproduct separation processes. [ABSTRACT FROM AUTHOR]

A compound consisting of Ni and imidazole (Ni–imidazole) was synthesized in large quantities by a one-step co-precipitation method. The structure and stability of this Ni–imidazole were well studied by a series of characterization methods. The Ni–imidazole compound exhibited excellent catalytic properties for the dimerization of ethylene to 1-butene. [ABSTRACT FROM AUTHOR]

This work delves into the study presented by Caramella and co‐workers (J. Am. Chem. Soc. 2002, 124, 7) on the cyclopentadiene dimerization. We have reperformed the calculations of this work using updated methodologies, obtaining the structures of the reactants and transition states, as well as new energy profiles. Additionally, we have obtained new insights that were not included in the previous work, such as bond structures from NBO analysis, QTAIM theory, and spin density. Reactivity indices of the principal NBOs responsible for the reaction have also been obtained using a recently developed model based on conceptual DFT and Sanderson's principle of electronegativity equalization and the new results obtained have allowed us to propose reaction mechanisms that satisfactorily justify all reaction stages. This work is a study of the mechanism of the cyclopentadiene dimerization reaction, but it is also an example of applying the new model for calculating reactivity indices for NBOs. Additionally, it demonstrates the combined use of these descriptors with other types of analyses that also employ NBOs or provide a description of the molecular bonding structure. As shown in this work, the collective use of all these methodologies generally provides an adequate description of the chemical reactivity of the studied processes. [ABSTRACT FROM AUTHOR]

B7-H3 (CD276) has two isoforms (2Ig and 4Ig), no confirmed cognate receptor, and physiological functions that remain elusive. While differentially expressed on many solid tumors correlating with poor survival, mechanisms of how B7-H3 signals in cis (tumor cell) versus in trans (immune cell co-regulator) to elicit pro-tumorigenic phenotypes remain poorly defined. Herein, we characterized a tumorigenic and signaling role for tumor cell-expressed 4Ig-B7-H3, the dominant human isoform, in gynecological cancers that could be abrogated upon CRISPR/Cas9 knockout of B7-H3; tumorigenesis was rescued upon re-expression of 4Ig-B7-H3. Size exclusion chromatography revealed dimerization states for the extracellular domains of both human 4Ig- and murine 2Ig-B7-H3. mEGFP lifetimes of expressed 4Ig-B7-H3-mEGFP fusions determined by FRET-FLIM assays confirmed close-proximity interactions of 4Ig-B7-H3 and identified two distinct homo-FRET lifetime populations, consistent with monomeric and homo-dimer interactions. In live cells, bioluminescence imaging of 4Ig-B7-H3-mediated split luciferase complementation showed dimerization of 4Ig-B7-H3. To separate basal from dimer state activities in the absence of a known receptor, C-terminus (cytosolic) chemically-induced dimerization of 4Ig-B7-H3 increased tumor cell proliferation and cell activation signaling pathways (AKT, Jak/STAT, HIF1α, NF-κβ) significantly above basal expression of 4Ig-B7-H3 alone. These results revealed a new, dimerization-dependent intrinsic tumorigenic signaling role for 4Ig-B7-H3, likely acting in cis, and provide a therapeutically-actionable target for intervention of B7-H3-dependent tumorigenesis. The 4Ig isoform of B7-H3, an immune modulatory protein expressed in tumors, resides in dimeric states with enhanced dimerization-dependent intrinsic signaling and tumorigenic activities, providing a therapeutically-actionable target for intervention. [ABSTRACT FROM AUTHOR]

Leucine‐rich repeat receptor kinases (LRR‐RKs) play a pivotal role in diverse aspects of growth, development, and immunity in plants by sensing extracellular signals. Typically, LRR‐RKs are activated through the ligand‐induced interaction with a SOMATIC EMBRYOGENESIS RECEPTOR KINASE (SERK) coreceptor, triggering downstream signaling. ROOT MERISTEM GROWTH FACTOR1 (RGF1) INSENSITIVEs (RGIs) LRR‐RLK receptors promote primary root meristem activity while inhibiting lateral root (LR) development in response to RGF peptide. In this study, we employed rapamycin‐induced dimerization (RiD) and BAK1‐INTERACTING RECEPTOR‐LIKE KINASE3 (BIR3) chimera approaches to explore the gain‐of‐function of RGI1, RGI4, and RGI5. Rapamycin induced the association of cytosolic kinase domains (CKDs) of RGI1 and the BAK1 coreceptor, activating both mitogen‐activated protein kinase 3 (MPK3) and MPK6. Rapamycin significantly inhibited LR formation in RiD‐RGI1/RGI4/RGI5‐BAK1 plants. Using transgenic Arabidopsis expressing RGI1CKD fused to the BIR3‐LRR chimera under estradiol control, we observed a substantial reduction in LR density upon β‐estradiol treatment. Additionally, we identified a decrease in root gravitropism in BIR3 chimera plants. In contrast, RiD‐RGI/BAK1 plants did not exhibit defects in root gravitropism, implying the importance of combinatorial interactions between RGIs and SERK coreceptors in the inhibition of root gravitropism. Constitutive activation of RGIs with BAK1 in RiD‐RGI/BAK1 plants by rapamycin treatment resulted in the inhibition of primary root growth, resembling the inhibitory effects observed with high concentrations of phytohormones on primary root elongation. Our findings highlight that the interactions between CKDs of RGIs and BAK1, constitutively induced by rapamycin or BIR3 chimera, efficiently control LR development. [ABSTRACT FROM AUTHOR]

Based on the theory of scaled particle (SPT), methods have been refined and applied to analyze the thermodynamic properties of non-spherical patchy particles in a disordered porous medium. Utilizing the associative theory of liquids in conjunction with SPT, we investigated the impact of associative interactions and connections between the functional nodes of particles on the formation of the nematic phase. Calculations of orientational and spatial distributions were conducted, which helped to understand the phase behavior of particles during the transition from isotropic to nematic phase under the spatial constraints imposed by the disordered matrix of the porous medium. [ABSTRACT FROM AUTHOR]

In the model system of DOPC (1,2-dioleoyl-sn-glycero-3-phosphocholine) liposomes exposed to peroxyl radicals generated by the azoinitiator AAPH, cemtirestat (CMTI-SH) inhibited lipid peroxidation more efficiently than the natural antioxidant glutathione. In the concentrations 100 to 500 µM, both CMTI-SH and GSH induced distinct lag phases in the initial stages of lipid peroxidation yet GSH produced consistently shorter induction periods (about twice) than equimolar CMTI-SH. Moreover, concentration dependence of lipid peroxidation inhibition measured at the 80th minute, revealed about three times higher IC50 value for GSH compared to CMTI-SH. When the incubations prolonged till 180 min no further absorbance changes at 270 and 302 nm, respectively, occurred. After addition of the reducing agent tris(2-carboxyethyl)phosphine, the absorbance peak at 270 nm shifted back to 302 nm. These findings pointed to the presence of reducible CMTI-SH disulfide whose definite structure was confirmed by proving identity of TLC retention and spectral data with those of the synthesized CMTI disulfide. When CMTI-SH and GSH were present simultaneously in the liposomal incubations, the mixing effect on the induction period was synergistic rather than additive. This was explained by ability of GSH to reduce CMTI disulfide which was proved in separate experiments with an authentic CMTI disulfide prepared synthetically. This finding was also demonstrated by experiment with CMTI-disulfide to protect the erythrocytes against oxidative damage induced by peroxyl radicals. To conclude, CMTI-SH scavenges reactive oxygen species yielding CMTI disulfide while GSH maintains CMTI-SH in the reduced state. This finding was also demonstrated by experiment with CMTI-disulfide to protect the erythrocytes against oxidative damage induced by peroxyl radicals. CMTI-SH would thus represent the first line of the cellular defense against peroxyl radical mediated oxidative stress. Cemtirestat inhibited lipid peroxidation more efficiently than GSH Cemtirestat disulfide was proved as the main oxidation product Cemtirestat disulfide protected erythrocytes against oxidative damage Cemtirestat disulfide was readily reduced by GSH Mechanism of thiol-disulfide exchange reaction was suggested [ABSTRACT FROM AUTHOR]

Accurate estimates of intermolecular interaction energy, ΔE, are crucial for modeling the properties of organic electronic materials and many other systems. For a diverse set of 50 dimers comprising up to 50 atoms (Set50-50, with 7 of its members being models of single-stacking junctions), benchmark ΔE data were compiled. They were obtained by the focal-point strategy, which involves computations using the canonical variant of the coupled cluster theory with singles, doubles, and perturbative triples [CCSD(T)] performed while applying a large basis set, along with extrapolations of the respective energy components to the complete basis set (CBS) limit. The resulting ΔE data were used to gauge the performance for the Set50-50 of several density-functional theory (DFT)-based approaches, and of one of the localized variants of the CCSD(T) method. This evaluation revealed that (1) the proposed "silver standard" approach, which employs the localized CCSD(T) method and CBS extrapolations, can be expected to provide accuracy better than two kJ/mol for absolute values of ΔE, and (2) from among the DFT techniques, computationally by far the cheapest approach (termed "ωB97X-3c/vDZP" by its authors) performed remarkably well. These findings are directly applicable in cost-effective yet reliable searches of the potential energy surfaces of noncovalent complexes. [ABSTRACT FROM AUTHOR]

Inflorescence architecture is important for rice (Oryza sativa) grain yield. The phytohormone cytokinin (CK) has been shown to regulate rice inflorescence development; however, the underlying mechanism mediated by CK perception is still unclear. Employing a forward genetic approach, we isolated an inactive variant of the CK receptor OHK4/OsHK4 gene named panicle length1, which shows decreased panicle size due to reduced inflorescence meristem (IM) activity. A 2-amino acid deletion in the long α-helix stalk of the sensory module of OHK4 impairs the homodimerization and ligand-binding capacity of the receptor, even though the residues do not touch the ligand-binding domain or the dimerization interface. This deletion impairs CK signaling that occurs through the type-B response regulator OsRR21, which acts downstream of OHK4 in controlling inflorescence size. Meanwhile, we found that IDEAL PLANT ARCHITECTURE1(IPA1)/WEALTHY FARMER'S PANICLE (WFP), encoding a positive regulator of IM development, acts downstream of CK signaling and is directly activated by OsRR21. Additionally, we revealed that IPA1/WFP directly binds to the OHK4 promoter and upregulates its expression through interactions with 2 TCP transcription factors, forming a positive feedback circuit. Altogether, we identified the OHK4-OsRR21-IPA1 regulatory module, providing important insights into the role of CK signaling in regulating rice inflorescence architecture. A positive feedback circuit involving the cytokinin signaling cascade OHK4-HPts-OsRR21 and IDEAL PLANT ARCHITECTURE1/WEALTHY FARMER'S PANICLE regulates inflorescence architecture in rice. [ABSTRACT FROM AUTHOR]

Three new monoterpene phenol dimers, bisbakuchiols V-X (1-3), and two bakuchiol ethers (4 and 5), along with four known compounds (6-9) were isolated from the fruits of Psoralea corylifolia. Their structures were elucidated based on extensive spectral analysis. The absolute configurations of 1, 2, 4, and 5 were specified by quantum chemical calculations of ECD spectra. [ABSTRACT FROM AUTHOR]