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Macrozooplankton and its grazing pressure shape ecosystem structures and carbon pathways in the Southern Ocean. Here, we present the implementation of "polar macrozooplankton" as a plankton functional type and a related fast‐sinking detritus class (fecal pellets) into the biogeochemical model REcoM‐2. We use the model to assess major carbon pathways and ecosystem structure in the Southern Ocean south of 50°S. The model represents zooplankton biomass and its spatial distribution in the Southern Ocean reasonably well in comparison to available biomass data. A distinct difference of our model from previous versions is the seasonal pattern of particle formation processes and ecosystem structures in the Southern Ocean. REcoM‐2 now captures high zooplankton biomass and a typical shift from a dominance of phytodetrital aggregates in spring to zooplankton fecal pellets later in the year. At sites with high biomass of macrozooplankton, the transfer efficiency of particulate organic carbon can be as high as 50%, and the carbon content of the exported material increases. In our simulations, macrozooplankton is an important component of the Southern Ocean plankton community, contributing up to 0.12 Pg C per year (14%) to total modeled carbon export across 100 m depth. Macrozooplankton changes the phytoplankton composition and supports the recycling of macronutrients. These results support the important role of macrozooplankton such as krill in the Southern Ocean and have implications for the representation of Southern Ocean biogeochemical cycles in models. Plain Language Summary: Large zooplankton such as krill is an important component of marine ecosystems, but it is rarely represented in ocean ecosystem models. Large zooplankton grazes on phytoplankton, smaller zooplankton, and sinking particles in the ocean. To understand the role of large zooplankton for carbon cycling in the Southern Ocean, we have implemented this group into our ecosystem model and describe macrozooplankton feeding and particle formation based on observations. We find that large zooplankton supports a stable or even increased growth of phytoplankton, in spite of its grazing. This is because it also returns nutrients to phytoplankton via excretion. Besides, large zooplankton increases the transfer of carbon to the deep ocean. Key Points: A new macrozoplankton parametrization is implemented into the biogeochemical model REcoM‐2Transfer efficiency reaches up to 50% due to the high carbon content and fast sinking of macrozooplankton fecal pelletsMacrozooplankton contributes up to 14% (0.12 Pg C yr−1) to modeled carbon export at 100 m depth in the Southern Ocean south of 50°S [ABSTRACT FROM AUTHOR]

Over the last decades, sea surface temperature (SST) reconstructions based on the Mg/Ca of foraminiferal calcite have frequently been used in combination with the δ18 O signal from the same material to provide estimates of the δ18 O of water (δ18 O w), a proxy for global ice volume and sea surface salinity (SSS). However, because of error propagation from one step to the next, better calibrations are required to increase the accuracy and robustness of existing isotope and element to temperature proxy relationships. Towards that goal, we determined Mg/Ca , Sr/Ca and the oxygen isotopic composition of Trilobatus sacculifer (previously referenced as Globigerinoides sacculifer) collected from surface waters (0–10 m) along a north–south transect in the eastern basin of the tropical and subtropical Atlantic Ocean. We established a new paleotemperature calibration based on Mg/Ca and on the combination of Mg/Ca and Sr/Ca. Subsequently, a sensitivity analysis was performed in which one, two or three different equations were considered. Results indicate that foraminiferal Mg/Ca allows for an accurate reconstruction of surface water temperature. Combining equations, δ18 O w can be reconstructed with a precision of about ± 0.5 ‰. However, the best possible salinity reconstruction based on locally calibrated equations only allowed for a reconstruction with an uncertainty of ± 2.49. This was confirmed by a Monte Carlo simulation, applied to test successive reconstructions in an "ideal case" in which explanatory variables are known. This simulation shows that from a purely statistical point of view, successive reconstructions involving Mg/Ca and δ18 O c preclude salinity reconstructions with a precision better than ± 1.69 and hardly better than ± 2.65 due to error propagation. Nevertheless, a direct linear fit to reconstruct salinity based on the same measured variables (Mg/Ca and δ18 O c) was established. This direct reconstruction of salinity led to a much better estimation of salinity (± 0.26) than the successive reconstructions. [ABSTRACT FROM AUTHOR]

Responses of marine primary production to a changing climate are determined by a concert of multiple environmental changes, for example in temperature, light, pCO2, nutrients, and grazing. To make robust projections of future global marine primary production, it is crucial to understand multiple driver effects on phytoplankton. This meta‐analysis quantifies individual and interactive effects of dual driver combinations on marine phytoplankton growth rates. Almost 50% of the single‐species laboratory studies were excluded because central data and metadata (growth rates, carbonate system, experimental treatments) were insufficiently reported. The remaining data (42 studies) allowed for the analysis of interactions of pCO2 with temperature, light, and nutrients, respectively. Growth rates mostly respond non‐additively, whereby the interaction with increased pCO2 profusely dampens growth‐enhancing effects of high temperature and high light. Multiple and single driver effects on coccolithophores differ from other phytoplankton groups, especially in their high sensitivity to increasing pCO2. Polar species decrease their growth rate in response to high pCO2, while temperate and tropical species benefit under these conditions. Based on the observed interactions and projected changes, we anticipate primary productivity to: (a) first increase but eventually decrease in the Arctic Ocean once nutrient limitation outweighs the benefits of higher light availability; (b) decrease in the tropics and mid‐latitudes due to intensifying nutrient limitation, possibly amplified by elevated pCO2; and (c) increase in the Southern Ocean in view of higher nutrient availability and synergistic interaction with increasing pCO2. Growth‐enhancing effect of high light and warming to coccolithophores, mainly Emiliania huxleyi, might increase their relative abundance as long as not offset by acidification. Dinoflagellates are expected to increase their relative abundance due to their positive growth response to increasing pCO2 and light levels. Our analysis reveals gaps in the knowledge on multiple driver responses and provides recommendations for future work on phytoplankton. [ABSTRACT FROM AUTHOR]

Coral reefs are threatened by global and local stressors. Yet, reefs appear to respond differently to different environmental stressors. Using a global dataset of coral reef occurrence as a proxy for the long‐term adaptation of corals to environmental conditions in combination with global environmental data, we show here how global (warming: sea surface temperature; acidification: aragonite saturation state, Ωarag) and local (eutrophication: nitrate concentration, and phosphate concentration) stressors influence coral reef habitat suitability. We analyse the relative distance of coral communities to their regional environmental optima. In addition, we calculate the expected change of coral reef habitat suitability across the tropics in relation to an increase of 0.1°C in temperature, an increase of 0.02 μmol/L in nitrate, an increase of 0.01 μmol/L in phosphate and a decrease of 0.04 in Ωarag. Our findings reveal that only 6% of the reefs worldwide will be unaffected by local and global stressors and can thus act as temporary refugia. Local stressors, driven by nutrient increase, will affect 22% of the reefs worldwide, whereas global stressors will affect 11% of these reefs. The remaining 61% of the reefs will be simultaneously affected by local and global stressors. Appropriate wastewater treatments can mitigate local eutrophication and could increase areas of temporary refugia to 28%, allowing us to 'buy time', while international agreements are found to abate global stressors. [ABSTRACT FROM AUTHOR]

To date, observations on a single location indicate that cryogenic gypsum (Ca[SO4]⋅2H2O) may constitute an efficient but hitherto overlooked ballasting mineral enhancing the efficiency of the biological carbon pump in the Arctic Ocean. In June–July 2017 we sampled cryogenic gypsum under pack ice in the Nansen Basin north of Svalbard using a plankton net mounted on a remotely operated vehicle (ROVnet). Cryogenic gypsum crystals were present at all sampled stations, which suggested a persisting cryogenic gypsum release from melting sea ice throughout the investigated area. This was supported by a sea ice backtracking model, indicating that gypsum release was not related to a specific region of sea ice formation. The observed cryogenic gypsum crystals exhibited a large variability in morphology and size, with the largest crystals exceeding a length of 1 cm. Preservation, temperature and pressure laboratory studies revealed that gypsum dissolution rates accelerated with increasing temperature and pressure, ranging from 6%d−1 by mass in polar surface water (−0.5°C) to 81 % d−1 by mass in Atlantic Water (2.5°C at 65 bar). When testing the preservation of gypsum in formaldehyde-fixed samples, we observed immediate dissolution. Dissolution at warmer temperatures and through inappropriate preservation media may thus explain why cryogenic gypsum was not observed in scientific samples previously. Direct measurements of gypsum crystal sinking velocities ranged between 200 and 7000 m d−1, suggesting that gypsum-loaded marine aggregates could rapidly sink from the surface to abyssal depths, supporting the hypothesized potential of gypsum as a ballasting mineral in the Arctic Ocean. [ABSTRACT FROM AUTHOR]

The haptophyte Phaeocystis antarctica is endemic to the Southern Ocean, where iron supply is sporadic and its availability limits primary production. In iron fertilization experiments, P. antarctica showed a prompt and steady increase in cell abundance compared to heavily silicified diatoms along with enhanced colony formation. Here we utilized a transcriptomic approach to investigate molecular responses to alleviation of iron limitation in P. antarctica. We analyzed the transcriptomic response before and after (14 h, 24 h and 72 h) iron addition to a low‐iron acclimated culture. After iron addition, we observed indicators of a quick reorganization of cellular energetics, from carbohydrate catabolism and mitochondrial energy production to anabolism. In addition to typical substitution responses from an iron‐economic toward an iron‐sufficient state for flavodoxin (ferredoxin) and plastocyanin (cytochrome c6), we found other genes utilizing the same strategy involved in nitrogen assimilation and fatty acid desaturation. Our results shed light on a number of adaptive mechanisms that P. antarctica uses under low iron, including the utilization of a Cu‐dependent ferric reductase system and indication of mixotrophic growth. The gene expression patterns underpin P. antarctica as a quick responder to iron addition. [ABSTRACT FROM AUTHOR]

Coral reefs in the wider Caribbean declined in hard coral cover by ~80% since the 1970s, but spatiotemporal analyses for sub-regions are lacking. Here, we explored benthic change patterns in the Mexican Caribbean reefs through meta-analysis between 1978 and 2016 including 125 coral reef sites. Findings revealed that hard coral cover decreased from ~26% in the 1970s to 16% in 2016, whereas macroalgae cover increased to ~30% in 2016. Both groups showed high spatiotemporal variability. Hard coral cover declined in total by 12% from 1978 to 2004 but increased again by 5% between 2005 and 2016 indicating some coral recovery after the 2005 mass bleaching event and hurricane impacts. In 2016, more than 80% of studied reefs were dominated by macroalgae, while only 15% were dominated by hard corals. This stands in contrast to 1978 when all reef sites surveyed were dominated by hard corals. This study is among the first within the Caribbean region that reports local recovery in coral cover in the Caribbean, while other Caribbean reefs have failed to recover. Most Mexican Caribbean coral reefs are now no longer dominated by hard corals. In order to prevent further reef degradation, viable and reliable conservation alternatives are required. [ABSTRACT FROM AUTHOR]

The Western Antarctic Peninsula (WAP), one of the most productive regions of the Southern Ocean, is currently undergoing rapid environmental changes such as ocean acidification (OA) and increased daily irradiances from enhanced surface‐water stratification. To assess the potential for future biological CO2 sequestration of this region, we incubated a natural phytoplankton assemblage from Ryder Bay, WAP, under a range of pCO2 levels (180 μatm, 450 μatm, and 1000 μatm) combined with either moderate or high natural solar radiation (MSR: 124 μmol photons m−2 s−1 and HSR: 435 μmol photons m−2 s−1, respectively). The initial and final phytoplankton communities were numerically dominated by the prymnesiophyte Phaeocystis antarctica, with the single cells initially being predominant and solitary and colonial cells reaching similar high abundances by the end. Only when communities were grown under ambient pCO2 in conjunction with HSR did the small diatom Fragilariopsis pseudonana outcompete P. antarctica at the end of the experiment. Such positive light‐dependent growth response of the diatom was, however, dampened by OA. These changes in community composition were caused by an enhanced photosensitivity of diatoms, especially F. pseudonana, under OA and HSR, reducing thereby their competitiveness toward P. antarctica. Moreover, community primary production (PP) of all treatments yielded similar high rates at the start and the end of the experiment, but with the main contributors shifting from initially large to small cells toward the end. Even though community PP of Ryder Bay phytoplankton was insensitive to the changes in light and CO2 availability, the observed size‐dependent shift in productivity could, however, weaken the biological CO2 sequestration potential of this region in the future. [ABSTRACT FROM AUTHOR]

Phytoplankton photosynthesis strongly relies on the operation of carbon‐concentrating mechanisms (CCMs) to accumulate CO2 around their carboxylating enzyme ribulose‐1,5‐bisphosphate carboxylase/oxygenase (RuBisCO). Earlier evolved phytoplankton groups were shown to exhibit higher CCM activities to compensate for their RuBisCO with low CO2 specificities. Here, we tested whether earlier evolved phytoplankton groups also exhibit a higher CCM plasticity. To this end, we collected data from literature and applied a Bayesian linear meta‐analytic model. Our results show that with elevated pCO2, photosynthetic CO2 affinities decreased strongest and most consistent for the earlier evolved groups, i.e., cyanobacteria and dinoflagellates, while CO2‐dependent changes in affinities for haptophytes and diatoms were smaller and less consistent. In addition, responses of maximum photosynthetic rates toward elevated pCO2 were generally small and inconsistent across species. Our results demonstrate that phytoplankton groups with an earlier origin possess a high CCM plasticity, whereas more recently evolved groups do not, which likely results from evolved differences in the CO2 specificity of RuBisCO. [ABSTRACT FROM AUTHOR]

Right-side bias in both sea surface cooling and phytoplankton blooms is often observed in the wake of hurricanes in the Northern Hemisphere. This idealized hurricane modeling study uses a coupled biological-physical model to understand the underlying mechanisms behind hurricane-induced cooling and phytoplankton bloom asymmetry. Both a deep ocean case and a continental shelf sea case are considered and contrasted. Model analyses show that while right-side asymmetric mixing due to inertial oscillations and restratification from strong right-side recirculation cells contributes to bloom asymmetry in the open ocean, the well-mixed condition in the continental shelf sea inhibits formation of recirculation cells, and the convergence of water onto the shelf is a more important process for bloom asymmetry. [ABSTRACT FROM AUTHOR]

Continuous observations during 3 years with a vertical resolution of 1 dbar from two Bio-Argo floats in the Black Sea that were equipped with oxygen optodes, chlorophyll fluorometers, and backscattering sensors are analyzed. The particle backscattering coefficient, b provides a proxy for the concentration of suspended particles. The observations clearly identify thermal and b intrusions down to ~700-800 m in the Bosporus inflow area. In this area, b is more than five times larger than elsewhere, which could indicate bacterial abundance and possible biological involvement in the precipitation of Mn-containing particles. The b anomalies become much shallower than the temperature anomalies with increasing distance to the east of the strait. Their maxima are located between the onset of the suboxic zone and the upper part of the anoxic layer. Unlike well-known intrusions that are caused by inflow, open ocean intrusions are shallower and often characterized by multiple layers of backscatter maxima with thicknesses of only 15-20 m. The ratio between backscattering coefficients measured at two wavelengths, which gives a proxy for particle size, shows that the relative amount of larger size particles in the anoxic layer increases with depth. The particle concentrations and their size distribution display different vertical variability, which indicates the complex transformation of biological matter. The lower concentration of particles and lower chlorophyll-a during the extremely warm 2016 reveals an overall positive correlation between the two properties. The trends in the particle backscattering coefficient in the suboxic zone during 2013-2016 could indirectly reveal a biogeochemical response to temperature changes. [ABSTRACT FROM AUTHOR]

The unprecedented rate of CO2 increase in our atmosphere and subsequent ocean acidification (OA) threatens coastal ecosystems. To forecast the functioning of coastal seagrass ecosystems in acidified oceans, more knowledge on the long-term adaptive capacities of seagrass species and their epibionts is needed. Therefore we studied morphological characteristics of Posidonia oceanica and the structure of its epibiont communities at a Mediterranean volcanic CO2 vent off Panarea Island (Italy) and performed a laboratory experiment to test the effect of OA on P. oceanica photosynthesis and its potential buffering capacity. At the study site east of Basiluzzo Islet, venting of CO2 gas was controlled by tides, resulting in an average pH difference of 0.1 between the vent and reference site. P. oceanica shoot and leaf density was unaffected by these levels of OA, although shorter leaves at the vent site suggest increased susceptibility to erosion, potentially by herbivores. The community of sessile epibionts differed in composition and was characterized by a higher species richness at the vent site, though net epiphytic calcium carbonate concentration was similar. These findings suggest a higher ecosystem complexity at the vent site, which may have facilitated the higher diversity of copepods in the otherwise unaffected motile epibiont community. In the laboratory experiment, P. oceanica photosynthesis increased with decreasing pHT (7.6, 6.6, 5.5), which induced an elevated pH at the leaf surfaces of up to 0.5 units compared to the ambient seawater pHT of 6.6. This suggests a temporary pH buffering in the diffusive boundary layer of leaves, which could be favorable for epibiont organisms. The results of this multispecies study contribute to understanding community-level responses and underlying processes in long-term acidified conditions. Increased replication and monitoring of physico-chemical parameters on an annual scale are, however, recommended to assure that the biological responses observed during a short period reflect long-term dynamics of these parameters. [ABSTRACT FROM AUTHOR]

A hybrid ensemble data assimilation scheme (HYBRID), combining a flow-dependent with a static background covariance, was developed and implemented for assimilating satellite (SeaWiFS) Chl-a data into a marine ecosystem model of the Mediterranean. The performance of HYBRID was assessed against a model free-run, the ensemble-based singular evolutive interpolated Kalman (SEIK) and its variant with static covariance (SFEK), with regard to the assimilated variable (Chl-a) and non-assimilated variables (dissolved inorganic nutrients). HYBRID was found more efficient than both SEIK and SFEK, reducing the Chl-a error by more than 40% in most areas, as compared to the free-run. Data assimilation had a positive overall impact on nutrients, except for a deterioration of nitrates simulation by SEIK in the most productive area (Adriatic). This was related to SEIK pronounced update in this area and the phytoplankton limitation on phosphate that lead to a built up of excess nitrates. SEIK was found more efficient in productive and variable areas, where its ensemble exhibited important spread. SFEK had an effect mostly on Chl-a, performing better than SEIK in less dynamic areas, adequately described by the dominant modes of its static covariance. HYBRID performed well in all areas, due to its 'blended' covariance. Its flow-dependent component appears to track changes in the system dynamics, while its static covariance helps maintaining sufficient spread in the forecast. HYBRID sensitivity experiments showed that an increased contribution from the flow-dependent covariance results in a deterioration of nitrates, similar to SEIK, while the improvement of HYBRID with increasing flow-dependent ensemble size quickly levels off. [ABSTRACT FROM AUTHOR]

Across-slope bottom boundary layer (BBL) fluxes on the shelf-edge connect this region to deeper waters. Two proposed ways in which across-slope BBL fluxes can occur, in regions that have a slope current aligned to the bathymetry, are the frictional veering of bottom currents termed the 'Ekman drain' and through local wind-forced downwelling (wind-driven surface Ekman flow with an associated bottom flow). We investigate the variability, magnitude and spatial scale of BBL fluxes on the Shetland shelf, which has a prominent slope current, using a high-resolution (∼2 km) configuration of the MITgcm model. Fluxes are analysed in the BBL at the shelf break near the 200 m isobath and are found to have a seasonal variability with high/low volume transport in winter/summer respectively. By using a multivariate regression approach, we find that the locally wind-driven Ekman transport plays no explicit role in explaining daily bottom fluxes. We can better explain the variability of the across-slope BBL flux as a linear function of the speed and across-slope component of the interior flow, corresponding to an Ekman plus mean-flow flux. We estimate that the mean-flow is a greater contributor than the Ekman flux to the BBL flux. The spatial heterogeneity of the BBL fluxes can be attributed to the mean-flow, which has a much shorter decorrelation length compared to the Ekman flux. We conclude that both the speed and direction of the interior current determines the daily BBL flux. The wind does not explicitly contribute through local downwelling, but may influence the interior current and therefore implicitly the BBL fluxes on longer timescales. [ABSTRACT FROM AUTHOR]

The chemical composition of the global ocean is governed by biological, chemical, and physical processes. These processes interact with each other so that the concentrations of carbon, oxygen, nitrogen (mainly from nitrate, nitrite, ammonium), and phosphorous (mainly from phosphate), vary in constant proportions, referred to as the Redfield ratios. We construct here the generalized total least squares estimator of these ratios. The significance of our approach is twofold; it respects the hydrological characteristics of the studied areas, and it can be applied identically in any area where enough data are available. The tests applied to Atlantic Ocean data highlight a variability of the Redfield ratios, both with geographical location and with depth. This variability emphasizes the importance of local and accurate estimates of Redfield ratios. [ABSTRACT FROM AUTHOR]

Transport of salt in the Irminger Current, the northern branch of the Atlantic Subpolar Gyre coupling the eastern and western subpolar North Atlantic, plays an important role for climate variability across a wide range of time scales. High-resolution ocean modeling and observations indicate that salinities in the eastern subpolar North Atlantic decrease with enhanced circulation of the North Atlantic subpolar gyre (SPG). This has led to the perception that a stronger SPG also transports less salt westward. In this study, we analyze a regional ocean model and a comprehensive global coupled climate model, and show that a stronger SPG transports more salt in the Irminger Current irrespective of lower salinities in its source region. The additional salt converges in the Labrador Sea and the Irminger Basin by eddy transports, increases surface salinity in the western SPG, and favors more intense deep convection. This is part of a positive feedback mechanism with potentially large implications for climate variability and predictability. [ABSTRACT FROM AUTHOR]

Filament intrusions are observed in high-resolution temperature (T) measurements from a 100-m and several month-long mooring in the Fram Strait in around 400-m water depth at the continental slope West of Svalbard (Spitsbergen, Norway). In this dynamic environment, a wide variety of intrusive layers are observed with thicknesses between 5 and 80 m with warmer water between cooler waters above and below. The layers typically last from several hours up to 1 day, exceeding the local buoyancy period but not lasting as long as intrusive layers in the open ocean. The intrusions are a result of an intermingling of Arctic and North-Atlantic waters and generated in the basins interior and locally via internal wave steepening upon the sloping bottom. Freely propagating semidiurnal lunar internal tides cannot exist without background vorticity at these high latitudes. Strongly nonlinear turbulent bores are not observed at the tidal periodicity, but wave fronts occur at the sub-inertial frequency of dominant baroclinic instability. The fronts are in part associated with near-buoyancy frequency internal waves (breaking). The details of the moored T observations and their spectral content demonstrate the non-smooth, relatively turbulent development including convective overturning and shear-induced instabilities when intrusions disperse in presumably salinity-compensated isopycnal layers. [ABSTRACT FROM AUTHOR]

A combined increase in seawater [CO2] and [H+] was recently shown to induce a shift from photosynthetic HCO3− to CO2 uptake in Emiliania huxleyi. This shift occurred within minutes, whereas acclimation to ocean acidification (OA) did not affect the carbon source., To identify the driver of this shift, we exposed low- and high-light acclimated E. huxleyi to a matrix of two levels of dissolved inorganic carbon (1400, 2800 μmol kg−1) and pH (8.15, 7.85) and directly measured cellular O2, CO2 and HCO3− fluxes under these conditions., Exposure to increased [CO2] had little effect on the photosynthetic fluxes, whereas increased [H+] led to a significant decline in HCO3− uptake. Low-light acclimated cells overcompensated for the inhibition of HCO3− uptake by increasing CO2 uptake. High-light acclimated cells, relying on higher proportions of HCO3− uptake, could not increase CO2 uptake and photosynthetic O2 evolution consequently became carbon-limited., These regulations indicate that OA responses in photosynthesis are caused by [H+] rather than by [CO2]. The impaired HCO3− uptake also provides a mechanistic explanation for lowered calcification under OA. Moreover, it explains the OA-dependent decrease in photosynthesis observed in high-light grown phytoplankton. [ABSTRACT FROM AUTHOR]

A new relationship is presented to give a review study on the evolution of inertial oscillations in the surface ocean locally generated by time-varying wind stress. The inertial oscillation is expressed as the superposition of a previous oscillation and a newly generated oscillation, which depends upon the time-varying wind stress. This relationship is employed to investigate some idealized wind change events. For a wind series varying temporally with different rates, the induced inertial oscillation is dominated by the wind with the greatest variation. The resonant wind, which rotates anti-cyclonically at the local inertial frequency with time, produces maximal amplitude of inertial oscillations, which grows monotonically. For the wind rotating at non-inertial frequencies, the responses vary periodically, with wind injecting inertial energy when it is in phase with the currents, but removing inertial energy when it is out of phase. The wind rotating anti-cyclonically with time is much more favorable to generate inertial oscillations than the cyclonic rotating wind. The wind with a frequency closer to the inertial frequency generates stronger inertial oscillations. For a diurnal wind, the induced inertial oscillation is dependent on latitude and is most significant at 30 °. This relationship is also applied to examine idealized moving cyclones. The inertial oscillation is much stronger on the right-hand side of the cyclone path than on the left-hand side (in the northern hemisphere). This is due to the wind being anti-cyclonic with time on the right-hand side, but cyclonic on the other side. The inertial oscillation varies with the cyclone translation speed. The optimal translation speed generating the greatest inertial oscillations is 2 m/s at the latitude of 10 ° and gradually increases to 6 m/s at the latitude of 30 °. [ABSTRACT FROM AUTHOR]

Combining stable carbon isotopic signatures (δC-DOC) and optical properties of dissolved organic matter (DOM), we examined spatial variability in the sources and reactivity of DOM from Oregon-Washington coastal waters, with a particular focus on evaluating whether these measurements may reliably trace terrigenous DOM in coastal oceans. We sampled four stations on the continental shelf and four stations on the continental slope near the mouth of the Columbia River, with sampling depths ranging from 0 to 1,678 m. Nitrate and phosphate concentrations were largely controlled by organic matter (OM) regeneration although the river plume may have led to excess nitrates in relation to phosphates near the river mouth and/or the surface. Four fluorescence components (C1 to C4) were identified by using excitation emission matrices-parallel factor analysis. C1 and C2 were assigned as humic-like components which represented degraded DOM rather than OM of allochthonous or autochthonous origin. C3 and C4 were both labile, protein-like components representing autochthonous contributions, while C4 was more sensitive to diagenesis. In the shallow water layer (salinity ≤32.5 and depth ≤50 m), the variation in absorption properties (SUVA and ɛ), fluorescence index, freshness index ( β/ α), percent fluorescence of C3, and δC-DOC revealed that the Columbia River plume exported DOM that was characterized by greater aromaticity, higher molecular weight, and being more decomposed than marine, autochthonous DOM. However, these signatures of terrigenous DOM disappeared rapidly with increasing depth and offshore distance. In the intermediate and deep water layers (salinity >32.5), the DOM indices were most driven by diagenesis, with changes in percent fluorescence components indicating increasing accumulation of humic DOM relative to protein-like DOM with depth. Principal component analysis that collectively assessed the DOM indices suggests that diagenesis was the primary factor driving the spatial variability of DOM properties in the study region, underlining challenges in tracing allochthonous DOM in coastal waters. [ABSTRACT FROM AUTHOR]

Antarctic and Southern Ocean (ASO) marine ecosystems have been changing for at least the last 30 years, including in response to increasing ocean temperatures and changes in the extent and seasonality of sea ice; the magnitude and direction of these changes differ between regions around Antarctica that could see populations of the same species changing differently in different regions. This article reviews current and expected changes in ASO physical habitats in response to climate change. It then reviews how these changes may impact the autecology of marine biota of this polar region: microbes, zooplankton, salps, Antarctic krill, fish, cephalopods, marine mammals, seabirds, and benthos. The general prognosis for ASO marine habitats is for an overall warming and freshening, strengthening of westerly winds, with a potential pole-ward movement of those winds and the frontal systems, and an increase in ocean eddy activity. Many habitat parameters will have regionally specific changes, particularly relating to sea ice characteristics and seasonal dynamics. Lower trophic levels are expected to move south as the ocean conditions in which they are currently found move pole-ward. For Antarctic krill and finfish, the latitudinal breadth of their range will depend on their tolerance of warming oceans and changes to productivity. Ocean acidification is a concern not only for calcifying organisms but also for crustaceans such as Antarctic krill; it is also likely to be the most important change in benthic habitats over the coming century. For marine mammals and birds, the expected changes primarily relate to their flexibility in moving to alternative locations for food and the energetic cost of longer or more complex foraging trips for those that are bound to breeding colonies. Few species are sufficiently well studied to make comprehensive species-specific vulnerability assessments possible. Priorities for future work are discussed. [ABSTRACT FROM AUTHOR]

The variability of total alkalinity (TA) and its relationship with salinity in the tropical and subtropical surface ocean were examined using data collected in various marine environments from a ship of opportunity. In the open ocean regions of the Atlantic, Pacific, and Indian Oceans, sea surface TA variability was observed to be mainly controlled by the simple dilution or concentration (SDC) effect of precipitation and evaporation, and the measured concentrations of TA agreed well with those predicted from salinity and temperature. Non-SDC changes in alkalinity in ocean margins and inland seas were examined by comparing the salinity-normalized alkalinity with that of the open ocean end-member. Non-SDC alkalinity additions to the western North Atlantic margin, eastern North Pacific margin, and Mediterranean Sea were identified, which mainly resulted from river inputs and shelf currents. In contrast, removal of TA through formation and sedimentation of calcium carbonate was observed to be an important control in the Red Sea. The concentration of the river end-member can only be reliably derived from the y intercept of TA-S regression (TAS0) in river-dominated systems such as estuaries and river plumes. In coastal regions where other processes (evaporation, shelf currents, upwelling, calcification, etc.) are more influential, TAS0 can significantly deviate from the river water concentration and hence be an unreliable indicator of it. Negative values of TAS0 can result from non-SDC TA removal at the low salinity end (relative to the salinity of the oceanic end-member) and/or non-SDC TA addition at high salinities (as occurs in the Mediterranean Sea). [ABSTRACT FROM AUTHOR]

Absorption spectra, particulate pigments, and hydrochemical constituents were measured in the western Bay of Bengal (BoB) during July-August 2010 when influence of river discharge is at peak. Chromophoric dissolved organic matter (CDOM) absorption coefficient (a(440)) displayed a significant inverse linear relationship with salinity in the surface waters implying conservative mixing of marine and terrestrial end members. The northern part of the study area is influenced by discharge from the river Ganga and a dominant terrestrial CDOM signal is seen. The southern part receives discharge from peninsular rivers with corresponding signals of higher CDOM than the linear model would indicate and higher UV-specific absorption coefficient (SUVA) indicating more aged and humified DOM. Lower contribution of CDOM to total non-water absorption and higher phytoplankton biomass (chlorophyll a absorption coefficient, a(440)) but lower chlorophyll a specific phytoplankton absorption coefficient (a(440)) characterize the northern part, compared to the southern part. Chlorophyll b had a distinct linear relationship with chlorophyll a in the latter. The size index (SI) indicated dominance of microphytoplankton in the northern and nano and picophytoplankton in the southern parts. Chlorophyll a is significantly related to a(440) by an inverse power model in the northern part but by an inverse linear model in the southern part. Our study suggests that knowledge of the phytoplankton community structure is essential to improve chlorophyll a algorithm in the coastal Bay of Bengal. [ABSTRACT FROM AUTHOR]

Diatoms of the iron-replete continental margins and North Atlantic are key exporters of organic carbon. In contrast, diatoms of the iron-limited Antarctic Circumpolar Current sequester silicon, but comparatively little carbon, in the underlying deep ocean and sediments. Because the Southern Ocean is the major hub of oceanic nutrient distribution, selective silicon sequestration there limits diatom blooms elsewhere and consequently the biotic carbon sequestration potential of the entire ocean. We investigated this paradox in an in situ iron fertilization experiment by comparing accumulation and sinking of diatom populations inside and outside the iron-fertilized patch over 5 wk. A bloom comprising various thin- and thick-shelled diatom species developed inside the patch despite the presence of large grazer populations. After the third week, most of the thinner-shelled diatom species underwent mass mortality, formed large, mucous aggregates, and sank out en masse (carbon sinkers). In contrast, thicker-shelled species, in particular Fragilariopsis kerguelensis, persisted in the surface layers, sank mainly empty shells continuously, and reduced silicate concentrations to similar levels both inside and outside the patch (silica sinkers). These patterns imply that thick-shelled, hence grazer-protected, diatom species evolved in response to heavy copepod grazing pressure in the presence of an abundant silicate supply. The ecology of these silica-sinking species decouples silicon and carbon cycles in the iron-limited Southern Ocean, whereas carbon-sinking species, when stimulated by iron fertilization, export more carbon per silicon. Our results suggest that large-scale iron fertilization of the silicate-rich Southern Ocean will not change silicon sequestration but will add carbon to the sinking silica flux. [ABSTRACT FROM AUTHOR]

A simple biogeochemical model coupled to an offline ocean tracer transport model driven by reanalysis ocean data is used to simulate the seasonal and interannual CO $_2$ flux variability in the northern Indian Ocean. The maximum of seasonal and interannual CO $_2$ emission variances in the northern Indian Ocean are located in the coastal Arabian Sea (AS) and Southern Peninsular India (SP) with a basin-wide seasonal amplitude and standard deviation of 0.044 $\pm $0.04 Pg C year $^{-1}$. The area integrated CO $_2$ emissions from these two regions in the model are significantly correlated (above a 95 % level) with the observations of Takahashi et al. (Deep-Sea Res-II, 56:554-577, ). The interannual anomalies of CO $_2$ emission from the AS and SP are found as 40 and 30 % of their respective seasonal amplitudes. Both the Arabian Sea (AS) and Southern Peninsular India (SP) interannual CO $_2$ emission anomalies show a 3-4-year variability. The correlations of AS and SP CO $_2$ emission anomalies with the Indian Ocean Dipole/Zonal Mode (IODZM) and Southern Oscillation (SO) indices from 1980 to 1999 are 0.35, 0.21 and 0.32, 0.01 respectively. A 5-year window moving correlation analysis shows that the relationship of AS and SP CO $_2$ emission to the SO and IODZM are complementary to each other. During the years when the correlation of air-sea CO $_2$ emission with the IODZM is stronger, the corresponding correlation with the SO is weaker or opposite. The total change in pCO $_2$ is broken down into changes induced by the individual components such as dissolved inorganic carbon (DIC), sea surface temperature (SST), alkalinity, and salinity and found that (1) the effect of SST in the AS CO $_2$ emission increases (decreases) when the correlation of CO $_2$ emission with the IODZM is positive (negative), and (2) the SP CO $_2$ emission is strongly controlled by the circulation-driven DIC changes; however, this relation is found to be weaker when the SO correlates negatively with the SP CO $_2$ emission. [ABSTRACT FROM AUTHOR]

Lattice-gas cellular automaton (LGCA) and lattice Boltzmann (LB) models are promising models for studying emergent behaviour of transport and interaction processes in biological systems. In this chapter, we will emphasise the use of LGCA/LB models and the derivation and analysis of LGCA models ranging from the classical example dynamics of fluid flow to clotting phenomena in cerebral aneurysms and the invasion of tumour cells. [ABSTRACT FROM AUTHOR]

An Earth System model of intermediate complexity is used to quantify the effects of potential reorganizations of the Atlantic meridional overturning circulation, ranging from a weakening to a complete shutdown, on future uptake of excess CO[sub2] by the ocean and the terrestrial biosphere. Circulation changes significantly reduce oceanic CO[sub2] uptake, with the largest effects occurring under a complete shutdown. The reduction in uptake is caused to a large extent by a decline in marine export of organic particulate matter. On land, soil carbon increases because of reduced soil respiration in the mid-latitudes of the Northern Hemisphere. This gain is partially compensated by loss of vegetation carbon associated with reduced primary production in the northern high latitudes due to a cooler and dryer climate. Altogether, these processes act to modestly enhance CO[sub2] concentration levels in the atmosphere, thereby leading to a small positive feedback. The rise in atmospheric CO[sub2] ranges from 13 ppm to 34 ppm in 2500, depending on the amount of AMOC weakening, the magnitude of the anthropogenic CO[sub2] perturbation, and the future CO[sub2] fertilization effect. [ABSTRACT FROM AUTHOR]

Observations that the majority of silica dissolution occurs within the upper 200 m of the ocean, and that sedimentation rates of diatom frustules generally do not decrease significantly with depth, suggested reduced dissolution rates of diatoms embedded within sinking aggregates. To investigate this hypothesis, silica dissolution rates of aggregated diatom cells were compared to those of dispersed cells during conditions mimicking sedimentation below the euphotic zone. Changes in the concentrations of biogenic silica, silicic acid, cell numbers, chlorophyll a and transparent exopolymer particles (TEP) were monitored within aggregates and in the surrounding seawater (SSW) during two 42-day experiments. Whereas the concentration of dispersed diatoms decreased over the course of the experiment, the amount of aggregated cells remained roughly constant after an initial increase. Initially only 6% of cells were aggregated and at the end of the experiment more than 60% of cells were enclosed within aggregates. These data imply lower dissolution rates for aggregated cells. However, fluxes of silica between the different pools could not be constrained reliably enough to unequivocally prove reduced dissolution for aggregated cells. [Copyright &y& Elsevier]

The ocean plays a central role in the global carbon cycle being by far the largest active reservoir. Atmospheric CO level depends on the COconcentration in the ocean surface layer, which is relatively low compared to mean oceanic values due to biological and physical carbon pumps. Although the ocean may take up much of the carbon released by the increased burning of fossil fuels, this capacity is limited because of the chemical buffering and a mismatch in time scales (oceanic mixing is much slower than anthropogenic perturbations). [ABSTRACT FROM AUTHOR]