429 results on '"De la cruz, R."'
Search Results
152. Finite confining effect on electron–phonon interaction in GaAs/Ga1−xAlxAs single heterostructures
- Author
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de la Cruz, R. M.
- Abstract
The form factors of the electron–phonon interaction for GaAs/Ga1−xAlxAs single heterostructures have been evaluated using a finite height barrier. The calculations are performed within the extreme quantum limit approximation, assuming for the envelope electronic wavefunction a modified Fang–Howard wavefunction. Both types of long-wave phonons, longitudinal optical and interface phonons, are considered. It is found that the effect of the finite height is to reduce the strength of the electron–phonon interaction.
- Published
- 1996
- Full Text
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153. Positron annihilation spectroscopy of vacancy aggregates in neutron-irradiated mgo crystals
- Author
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Pareja, R., De La Cruz, R. M., Gonzalez, R., and Chen, Y.
- Abstract
Positron annihilation measurements in neutron-irradiated MgO crystals show that the positron lifetime is shorter than in as-grown crystals, suggesting that most of the defects produced by neutron irradiations are positively charged. The concentration of the neutral anion vacancy (possibly also the neutral anion divacancy) is estimated to be no more than ∼ 1016 cm-3 for samples irradiated to a dose of 1017 to 1019 n cm-2. Annealing experiments on the neutron-irradiated crystals show a significant increase in the positron lifetime after anneals at 900 K. The increase is attributed to positron trapping by anion - vacancy aggregates. A lifetime of (284±15)ps is tentatively assigned to positrons trapped in these aggregates.
- Published
- 1992
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154. Invasive pulmonary aspergillosis in a patient with persistent neutropenia.
- Author
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De la Cruz R, Toala I, Nakamatsu R, Huang A, and Ramirez J
- Abstract
Voriconazole is frequently used as primary therapy for invasive aspergillosis. We report the case of a severely neutropenic patient with invasive pulmonary aspergillosis who was successfully treated with the combination of voriconazole and caspofungin after clinical failure of first-line therapy with voriconazole. Clinicians confronted with the failure of first-line therapy for invasive aspergillosis in an immunosuppressed patient should consider combination antifungal therapy. [ABSTRACT FROM AUTHOR]
- Published
- 2007
155. A rare case of septic shock associated with Pasteurella multocida.
- Author
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Arnold FW, De La Cruz R, Hartigan K, Griffin SM, and Huang A
- Abstract
Enteroaggregative Escherichia coli (EAEC) is an increasingly recognized cause of acute diarrhea among both children and adults. Travelers to developing regions such as India, Jamaica, and Mexico are at increased risk. Contamination of food and water plays a central role in transmission. The clinical presentation of EAEC infection is characterized by watery diarrhea, usually unaccompanied by blood or mucus. The gold standard for diagnosis is the HEp-2 cell adherence assay; the unique 'stacked-brick' aggregative pattern of adherence is characteristic of this pathogen. However, because laboratory diagnosis is not routinely available, symptomatic infections are usually treated empirically. In most regions, EAEC strains are susceptible to the fluoroquinolones and rifaximin. [ABSTRACT FROM AUTHOR]
- Published
- 2007
156. Índices de la Revista de Psicología 1961-1965
- Author
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Sánchez González, José Antonio, de la Cruz R., Yolanda, Sánchez González, José Antonio, and de la Cruz R., Yolanda
- Abstract
Índices de la presente publicación desde sus inicios en 1961
- Published
- 1965
157. Further studies on a mycoparasitic basidiomycete species
- Author
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Cerrato, R F, primary, de la Cruz, R E, additional, and Hubbell, D H, additional
- Published
- 1976
- Full Text
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158. Integration of manual channel initiation and flow path tracing in extracting stream features from lidar-derived DTM
- Author
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Neale, Christopher M. U., Maltese, Antonino, Gaspa, M. C., De La Cruz, R. M., Olfindo, N. T., Borlongan, N. J. B., and Perez, A. M. C.
- Published
- 2016
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159. Development of the Philippine Hydrologic Dataset (PHD) from LiDAR and other remotely-sensed data
- Author
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Michel, Ulrich, Schulz, Karsten, Ehlers, Manfred, Nikolakopoulos, Konstantinos G., Civco, Daniel, Perez, A. M. C., Gaspa, M. C., Aloc, D. S., Mahor, M. A. P., Gonzalez, K. A. C., Borlongan, N. J. B., De La Cruz, R. M., Olfindo, N. T., and Blanco, A. C.
- Published
- 2015
- Full Text
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160. Teaching NeuroImage: Oculomasticatory myorhythmia: pathognomonic phenomenology of Whipple disease.
- Author
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Revilla FJ, de la Cruz R, Khardori N, and Espay AJ
- Published
- 2008
- Full Text
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161. The Imperata grasslands of tropical Asia: area, distribution, and typology
- Author
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Soekardi, M., Huijun, G., de la Cruz, R., Garrity, D. P., Gunasena, H. P. M., Pathak, P. S., van So, N., Van Noordwijk, M., and Majid, N. M.
- Subjects
LAND use - Abstract
The rehabilitation or intensified use of Imperata grasslands will require a much better understanding of their area, distribution, and characteristics. We generated estimates of the area of Imperata grasslands in tropical Asia, and suggested a typology of Imperata grasslandsthat may be useful to define the pathways toward appropriate land use intensification. We conclude that the area of Imperata grasslands in Asia is about 35 million ha. This is about 4% of the total land area. The countries with the largest area of Imperata grasslands are Indonesia (8.5 million ha) and India (8.0 million ha). Those with the largest proportion of their surface area covered with Imperata are Sri Lanka (23%). the Philippines (17%). and Vietnam (9%). Laos, Thailand.Myanmar. and Bangladesh evidently all have similar proportions of their land area infested with Imperata (about 3 to 4%). Malaysia (< 1%), Cambodia (1%), and the southern part of China (2%) have but a minorproportion of their total land area in Imperata. The species was found widely distributed on the full range of soil orders. It occupied both fertile (e.g. some of the Inceptisols and Andisols) and infertilesoils (Ultisols and Oxisols) across a wide range of climates and elevations. Imperata lands fall into four mapping scale-related categories: Mega-grasslands, macro-grasslands, meso-grasslands. and micro-grasslands. The mega-grasslands are often referred to as 'sheet Imperata'. They are the large contiguous areas of Imperata that would appear on small-scale maps of say 1: 1,000,000. We propose that this basic typology be supplemented with a number of additional components that have a key influence on intensification pathways: land quality, marketaccess. and the source of power for tillage. The typology was applied in a case study of Indonesian villages in the vicinity of Imperata grasslands. We propose an international initiative to map and derive a more complete and uniform picture of the area of the Imperata grasslands [ABSTRACT FROM AUTHOR]
- Published
- 1996
162. ChemInform Abstract: Total Synthesis of Mycophenolic Acid.
- Author
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DE LA CRUZ, R. A., TALAMAS, F. X., VAZQUEZ, A., and MUCHOWSKI, J. M.
- Published
- 1997
- Full Text
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163. ChemInform Abstract: Novel Potent and m2-Selective Antimuscarinic Compounds which Penetrate the Blood-Brain Barrier.
- Author
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COHEN, V. I., JIN, B., GITLER, M. S., DE LA CRUZ, R. A., BOULAY, S. F., SOOD, V. K., ZEEBERG, B. R., and REBA, R. C.
- Published
- 1995
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164. ChemInform Abstract: Synthesis of Some Dibenzodiazepinone Derivatives as Potent and m2- Selective Antimuscarinic Compounds.
- Author
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COHEN, V. I., JIN, B., GITLER, M. S., DE LA CRUZ, R. A., RZESZOTARSKI, W. J., ZEEBERG, B. R., BAUMGOLD, J., and REBA, R. C.
- Published
- 1995
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165. AVANCES EN LA PRODUCCIÓN DE ÁCIDO CÍTRICO A PARTIR DE MIEL FINAL POR ASPERGILLUS NIGER.
- Author
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Garriga, L. Mesa, González Suárez, E., De La Cruz, R., and López, Y.
- Abstract
En este trabajo se utiliza el método de Conversión Fermentativa de fuentes azucaradas, aplicado desde 1925 obtenido a través de fermentación de soluciones de glucosa, sacarosa o melazas de caña, mediante la utilización de hongos en este caso Aspergillus níger. La solución azucarada que se utilize en este caso es la miel final del proceso de fabricación de azúcar. La miel seleccionada, es decir, la que responde a las exigencias de la biosíntesis, se diluye y se le adiciona ferrocianuro de potasio y oxalatos de amonio para precipitar cationes indeseables, luego se esteriliza y se le ajusta el pH entre 6.8 y 7.0. En los fermentadores de siembra se realiza el crecimiento y activación del hongo (Aspergillus sp) mediante la inoculación con esporas y el suministro de aire estéril a un medio de concentración adecuada, al que se le han añadido las sales nutrientes. Terminada la fermentación, que dura entre 7 y 8 días, se separa el micelio del hongo y se procede a medir la acidez final. Para la realización de este trabajo se utilizó el hongo Aspergillus níger, procedente del ICIDCA (Ciudad de La Habana); el mismo fue cultivado en cuñas de Agar Saboraud Dextrosa durante 7 días a 30° C, hasta observar abundante esporulación. Se realizaron numerosos pases a frascos con el mismo medio, con el objetivo de multiplicar el número de esporas. Los frascos conteniendo los cultivos se almacenan a 4ª C.En la realización del experimento, una vez preparados los medios de cultivos, se colocaron en una Zaranda termostatizada donde estaba garantizada una temperatura estable de 30°C y una agitación de 250 r.p.m, por el período de ocho días y se tomaron muestras diarias para determinar el comportamiento del pH y de la formación de ácido cítrico, los análisis de peso húmedo y acidez se midieron al inicio y al final de la fermentación. En el trabajo no se pudo determinar la concentración final de ácido cítrico. [ABSTRACT FROM AUTHOR]
- Published
- 2005
166. Broad front concept of in situ processing of solid fossil fuels
- Author
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de la Cruz, R
- Published
- 1976
167. Method and apparatus for determining rock stress in situ
- Author
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de la Cruz, R
- Published
- 1976
168. Metabolism of 2,4-D in plants: comparative analysis of metabolic detoxification pathways in tolerant crops and resistant weeds.
- Author
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Torra J, Alcántara-de la Cruz R, de Figueiredo MRA, Gaines TA, Jugulam M, Merotto A Jr, Palma-Bautista C, Rojano-Delgado AM, and Riechers DE
- Subjects
- Inactivation, Metabolic, 2,4-Dichlorophenoxyacetic Acid metabolism, 2,4-Dichlorophenoxyacetic Acid pharmacology, Plant Weeds metabolism, Plant Weeds drug effects, Plant Weeds genetics, Herbicide Resistance genetics, Herbicides pharmacology, Herbicides metabolism, Crops, Agricultural metabolism, Crops, Agricultural genetics
- Abstract
The commercialization of 2,4-D (2,4-dichlorophenoxyacetic acid) latifolicide in 1945 marked the beginning of the selective herbicide market, with this active ingredient playing a pivotal role among commercial herbicides due to the natural tolerance of monocots compared with dicots. Due to its intricate mode of action, involving interactions within endogenous auxin signaling networks, 2,4-D was initially considered a low-risk herbicide to evolve weed resistance. However, the intensification of 2,4-D use has contributed to the emergence of 2,4-D-resistant broadleaf weeds, challenging earlier beliefs. This review explores 2,4-D tolerance in crops and evolved resistance in weeds, emphasizing an in-depth understanding of 2,4-D metabolic detoxification. Nine confirmed 2,4-D-resistant weed species, driven by rapid metabolism, highlight cytochrome P450 monooxygenases in Phase I and glycosyltransferases in Phase II as key enzymes. Resistance to 2,4-D may also involve impaired translocation associated with mutations in auxin/indole-3-acetic acid (Aux/IAA) co-receptor genes. Moreover, temperature variations affect 2,4-D efficacy, with high temperatures increasing herbicide metabolism rates and reducing weed control, while drought stress did not affect 2,4-D efficacy. Research on 2,4-D resistance has primarily focused on non-target-site resistance (NTSR) mechanisms, including 2,4-D metabolic detoxification, with limited exploration of the inheritance and genetic basis underlying these traits. Resistance to 2,4-D in weeds is typically governed by a single gene, either dominant or incompletely dominant, raising questions about gain-of-function or loss-of-function mutations that confer resistance. Future research should unravel the physiological and molecular-genetic basis of 2,4-D NTSR, exploring potential cross-resistance patterns and assessing fitness costs that may affect future evolution of auxin-resistant weeds. © 2024 Society of Chemical Industry., (© 2024 Society of Chemical Industry.)
- Published
- 2024
- Full Text
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169. A joint analysis proposal of nonlinear longitudinal and time-to-event right-, interval-censored data for modeling pregnancy miscarriage.
- Author
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de la Cruz R, Lavielle M, Meza C, and Núñez-Antón V
- Subjects
- Humans, Female, Pregnancy, Adult, Longitudinal Studies, Models, Statistical, Models, Biological, Abortion, Spontaneous blood, Chorionic Gonadotropin, beta Subunit, Human blood
- Abstract
Pregnancy in-vitro fertilization (IVF) cases are associated with adverse first-trimester outcomes in comparison to spontaneously achieved pregnancies. Human chorionic gonadotrophin β subunit (β-HCG) is a well-known biomarker for the diagnosis and monitoring of pregnancy after IVF. Low levels of β-HCG during this period are related to miscarriage, ectopic pregnancy, and IVF procedure failures. Longitudinal profiles of β-HCG can be used to distinguish between normal and abnormal pregnancies and to assist and guide the clinician in better management and monitoring of post-IVF pregnancies. Therefore, assessing the association between longitudinally measured β-HCG serum concentration and time to early miscarriage is of crucial interest to clinicians. A common joint modeling approach is to use the longitudinal β-HCG trajectory to determine the risk of miscarriage. This work was motivated by a follow-up study with normal and abnormal pregnancies where β-HCG serum concentrations were measured in 173 young women during a gestational age of 9-86 days in Santiago, Chile. Some women experienced a miscarriage event, and their exact event times were unknown, so we have interval-censored data, with the event occurring between the last time of the observed measurement and ten days later. However, for those women belonging to the normal pregnancy group; that is, carrying a pregnancy to a full-term event, right censoring data are observed. Estimation procedures are based on the Stochastic Approximation of the Expectation-Maximization (SAEM) algorithm., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 Elsevier Ltd. All rights reserved.)
- Published
- 2024
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170. Genotypic spectrum of ABCA4-associated retinal degenerations in 211 unrelated Mexican patients: identification of 22 novel disease-causing variants.
- Author
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Chacon-Camacho OF, Xilotl-de Jesús N, Calderón-Martínez E, Ordoñez-Labastida V, Neria-Gonzalez MI, Villafuerte-de la Cruz R, Martinez-Rojas A, and Zenteno JC
- Subjects
- Humans, Mexico, Male, Female, Child, Mutation, Adult, Adolescent, Middle Aged, High-Throughput Nucleotide Sequencing, Alleles, Phenotype, Child, Preschool, Young Adult, Pedigree, ATP-Binding Cassette Transporters genetics, Retinal Degeneration genetics, Genotype
- Abstract
The purpose of this study was to analyze and molecularly describe the largest group of patients with ABCA4-associated retinal degeneration in Latin America. Pathogenic variants in ABCA4, a member of the ATP Binding Cassette (ABC) transporters superfamily, is one of the most common causes of inherited visual deficiency in humans. Retinal phenotypes associated with genetic defects in ABCA4 are collectively known as ABCA4-associated retinal degenerations (ABCA4R), a group of recessively inherited disorders associated with a high allelic heterogeneity. While large groups of Caucasian and Asiatic individuals suffering from ABCA4R have been well characterized, molecular information from certain ethnic groups is limited or unavailable, precluding a more realistic knowledge of ABCA4-related mutational profile worldwide. In this study, we describe the molecular findings of a large group of 211 ABCA4R index cases from Mexico. Genotyping was performed using either next generation sequencing (NGS) of a retinal dystrophy genes panel or exome. ABCA4 targeted mutation testing was applied to a subgroup of subjects in whom founder mutations were suspected. A total of 128 different ABCA4 pathogenic variants were identified, including 22 previously unpublished variants. The most common type of genetic variation was single nucleotide substitutions which occurred in 92.7% (408/440 alleles). According to the predicted protein effect, the most frequent variant type was missense, occurring in 83.5% of disease-causing alleles (368/440). Mutations such as p.Ala1773Val are fully demonstrated as a founder effect in native inhabitants of certain regions of Mexico. This study also gives us certain indications of other founder effects that need to be further studied in the near future. This is the largest molecularly characterized ABCA4R Latin American cohort, and our results supports the value of conducting genetic screening in underrepresented populations for a better knowledge of the mutational profile leading to monogenic diseases., (© 2024. The Author(s).)
- Published
- 2024
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171. Multimodal and longitudinal evaluation of novel phenotype-genotype correlation of CLN3 isolated retinal degeneration in an hispanic female with heterozygous mutations c.944dup and c.1305C>G.
- Author
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Garza-Garza LA, Villarreal-Martinez P, Villafuerte-de la Cruz R, and Garza-Leon M
- Subjects
- Female, Humans, Electroretinography, Fluorescein Angiography, Heterozygote, Hispanic or Latino genetics, Membrane Glycoproteins genetics, Molecular Chaperones genetics, Mutation, Phenotype, Prospective Studies, Tomography, Optical Coherence, Retinal Degeneration diagnosis, Retinal Degeneration genetics
- Abstract
Background: Inherited retinal disorders (IRDs) are a complex group of heritable diseases which are characterized by rod, cone, retinal pigment epithelium, or optic nerve dysfunction. Recently, mutations in CLN3 have also been associated with isolated IRDs. Herein, a case with heterozygous CLN3 variations that had not been previously linked to a CLN3 -isolated retinal degeneration ( CLN3 IRD) phenotype in a Hispanic female and its multimodal imaging findings across a 10-year follow-up are presented., Material and Methods: An observational, prospective, case report on a hispanic female with CLN3 IRD is presented. Patients underwent genetic testing and color fundus photography (CFC) and autofluorescence (FAF), fluorescein angiography (FA), Spectral domain optical coherence tomography (OCT) of the macular area, electroretinogram (ERG) and 30-2 visual field examination through automated perimetry., Results: A female, aged 24, affected by CLN3 IRD phenotype from c.944dup and c.1305C>G compound heterozygous variants, presented with bilateral hypopigmentary changes in the macular area of OU with that corresponded to hyporautofluorescent deposits in the macular area on FAF. An atrophic maculopathy was evident on structural OCT, and FA disclosed a symmetrical macular hyperflourescence with staining in the early and late stages in OU. Humphrey visual field testing showed a marked reduction of the central visual field in OU. Electrophysiological testing revealed an ERG with markedly decreased a and b waves in OU. In ten years follow up developed of bone spiculae in the midperipheral retina., Conclusions: We reported a patient with a novel CLN3 IRD severe phenotype associated with the variants c.944dup and c.1305C>G, which had previously only been associated with JCNL.
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- 2024
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172. Glyphosate hormesis induced by treatment via seed stimulates the growth and biomass accumulation in soybean seedlings.
- Author
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Krenchinski FH, Costa RN, Pereira VGC, Bevilaqua NC, Alcántara-de la Cruz R, Velini ED, and Carbonari CA
- Subjects
- Glycine max, Seedlings, Glycine toxicity, Hormesis, Biomass, Seeds, Glyphosate, Herbicides toxicity
- Abstract
Glyphosate hormesis, identified as a potential means to enhance crop yields, encounters practical constraints because it is typically assessed through foliar applications. The expression and extend of hormesis in this approach are influenced by unpredictable environmental conditions, highlighting the need to explore alternative glyphosate application methods, such as seed treatment. This study aimed to assess glyphosate hormesis on growth rates and biomass accumulation in seedlings soybean cultivars. Two dose-response experiments [doses from 0 to 2880 g acid equivalent (ae) ha
-1 ], one via foliar and one via seed, were conducted on three soybean cultivars [one non-glyphosate-resistant (NGR) and two glyphosate-resistant (GR, one RR and one RR2)]. In a subsequent experiment, three safe glyphosate doses (0, 90 and 180 g ae ha-1 ) applied via seed were evaluated on four soybean cultivars (two RR and two RR2). For foliar applications, the range of glyphosate doses increasing growth rates and dry biomass by 12-28 % were 5.6-45 g ae ha-1 for the NGR cultivar, of 45-720 g ae ha-1 for RR and of 11.25-180 g ae ha-1 for RR2. In the seed treatment, biomass increases of 16-60 % occurred at 45-180 g ae ha-1 for the NGR and RR cultivars, and 90-360 g ae ha-1 for RR2. Glyphosate doses of 90 and 180 g ae ha-1 , applied via seeds, provided greater growth and biomass accumulation for the RR and RR2 soybean cultivars. Both foliar and seed applications of glyphosate increased growth and biomass accumulation in soybean cultivars, with seed treatments showing greater and more consistent enhancements. These findings propose practical and viable alternative for harnessing glyphosate hormesis to facilitate the early development of soybeans and potentially enhance crop yield., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 Elsevier B.V. All rights reserved.)- Published
- 2024
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173. Glyphosate hormesis effects on the vegetative and reproductive development of glyphosate-susceptible and -resistant Conyza sumatrensis biotypes.
- Author
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Cesco VJS, Krenchinski FH, Rodrigues DM, Alcántara-de la Cruz R, Duke SO, Velini ED, and Carbonari CA
- Subjects
- Glyphosate, Glycine toxicity, Hormesis, Herbicide Resistance, Plants, Conyza, Herbicides toxicity
- Abstract
Low glyphosate doses that produce hormesis may alter the susceptibility to herbicides of weeds or enhance their propagation and dispersal. The objective of this work was to evaluate the hormetic effects of glyphosate on the vegetative, phenological and reproductive development in resistant (R) and susceptible (S) Conyza sumatrensis biotypes. The glyphosate resistance level of biotype R was 11.2-fold compared to the S biotype. Glyphosate doses <11.25 g ae ha
-1 induced temporary and permanent hormetic effects for the number of leaves, plant height and dry mass accumulation up to 28 d after application in both R and S biotypes. The S biotype required 15-19% fewer thermal units at 1.4 and 2.8 g ae ha-1 glyphosate than untreated plants to reach the bolting stage. Also, this biotype had less thermal units associated with the appearance (1225 vs 1408 units) and opening (1520 vs 1765 units) of the first capitulum than the R biotype. In addition, glyphosate affected reproductive traits of both biotypes compared to their controls, increasing the number of capitulum's and seeds per plant up to 37 and 41% (at 2.8 and 0.7 g ae h-1 , respectively) in the S biotype, and by 48 and 114% (both at 5.6 g ae ha-1 ) in the R biotype. Depending on environmental parameters, glyphosate may or may not cause hormetic effects on the vegetative and phenological development of C. sumatrenis biotypes; however, this herbicide increases the speed and fecundity of reproduction, regardless of the glyphosate susceptibility level, which can alter the population dynamics and glyphosate susceptibility of future generations., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 Elsevier Ltd. All rights reserved.)- Published
- 2024
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174. T2-based magnetic resonance genitography in children with complex anorectal malformations: experience at a tertiary pediatric hospital in Latin America.
- Author
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Lazarte-Rantes C, Chirinos-Gambarini M, Sulca-Cruzado GJ, Ramirez-De la Cruz R, Trigoso V, Cerron-Vela C, and De la Torre-Mondragon L
- Subjects
- Female, Humans, Child, Animals, Latin America, Hospitals, Pediatric, Magnetic Resonance Imaging methods, Magnetic Resonance Spectroscopy, Rectum diagnostic imaging, Rectum abnormalities, Cloaca diagnostic imaging, Cloaca abnormalities, Anorectal Malformations diagnostic imaging, Anorectal Malformations surgery
- Abstract
In children with anorectal malformations (ARMs), it is essential to have a diagnostic imaging method that helps with the evaluation of the internal anatomy. In patients with a persistent cloaca, an ARM variant, in which the measurement of the urethral channel and common channel determines surgical management, there are multiple options for imaging. Magnetic resonance imaging (MRI) is an excellent method for this purpose, from which accurate measurements of channel length can be obtained. Additionally, the use of volumetric/isotropic sequences allows multiplanar reformatting. We present our experience with pelvic MRI and intracavitary non-paramagnetic contrast (MR genitography). This method uses volumetric T2-weighted images and the instillation of saline solution as a contrast agent to distinguish the common channel, length of the urethra, anatomy of the vagina, and presence and location of the rectal fistula. We believe this technique to be particularly useful for those working in settings with limited MRI resources., (© 2024. The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature.)
- Published
- 2024
- Full Text
- View/download PDF
175. Classification of longitudinal profiles using semi-parametric nonlinear mixed models with P-Splines and the SAEM algorithm.
- Author
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Márquez M, Meza C, Lee DJ, and De la Cruz R
- Subjects
- Female, Humans, Pregnancy, Pregnancy Outcome, Models, Statistical, Longitudinal Studies, Algorithms, Software
- Abstract
In this work, we propose an extension of a semiparametric nonlinear mixed-effects model for longitudinal data that incorporates more flexibility with penalized splines (P-splines) as smooth terms. The novelty of the proposed approach consists of the formulation of the model within the stochastic approximation version of the EM algorithm for maximum likelihood, the so-called SAEM algorithm. The proposed approach takes advantage of the formulation of a P-spline as a mixed-effects model and the use of the computational advantages of the existing software for the SAEM algorithm for the estimation of the random effects and the variance components. Additionally, we developed a supervised classification method for these non-linear mixed models using an adaptive importance sampling scheme. To illustrate our proposal, we consider two studies on pregnant women where two biomarkers are used as indicators of changes during pregnancy. In both studies, information about the women's pregnancy outcomes is known. Our proposal provides a unified framework for the classification of longitudinal profiles that may have important implications for the early detection and monitoring of pregnancy-related changes and contribute to improved maternal and fetal health outcomes. We show that the proposed models improve the analysis of this type of data compared to previous studies. These improvements are reflected both in the fit of the models and in the classification of the groups., (© 2023 John Wiley & Sons Ltd.)
- Published
- 2023
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176. Systematic review: fluid biomarkers and machine learning methods to improve the diagnosis from mild cognitive impairment to Alzheimer's disease.
- Author
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Blanco K, Salcidua S, Orellana P, Sauma-Pérez T, León T, Steinmetz LCL, Ibañez A, Duran-Aniotz C, and de la Cruz R
- Subjects
- Humans, Cross-Sectional Studies, Disease Progression, Biomarkers cerebrospinal fluid, Machine Learning, Amyloid beta-Peptides cerebrospinal fluid, tau Proteins cerebrospinal fluid, Alzheimer Disease genetics, Cognitive Dysfunction diagnostic imaging, Cognitive Dysfunction cerebrospinal fluid
- Abstract
Mild cognitive impairment (MCI) is often considered an early stage of dementia, with estimated rates of progression to dementia up to 80-90% after approximately 6 years from the initial diagnosis. Diagnosis of cognitive impairment in dementia is typically based on clinical evaluation, neuropsychological assessments, cerebrospinal fluid (CSF) biomarkers, and neuroimaging. The main goal of diagnosing MCI is to determine its cause, particularly whether it is due to Alzheimer's disease (AD). However, only a limited percentage of the population has access to etiological confirmation, which has led to the emergence of peripheral fluid biomarkers as a diagnostic tool for dementias, including MCI due to AD. Recent advances in biofluid assays have enabled the use of sophisticated statistical models and multimodal machine learning (ML) algorithms for the diagnosis of MCI based on fluid biomarkers from CSF, peripheral blood, and saliva, among others. This approach has shown promise for identifying specific causes of MCI, including AD. After a PRISMA analysis, 29 articles revealed a trend towards using multimodal algorithms that incorporate additional biomarkers such as neuroimaging, neuropsychological tests, and genetic information. Particularly, neuroimaging is commonly used in conjunction with fluid biomarkers for both cross-sectional and longitudinal studies. Our systematic review suggests that cost-effective longitudinal multimodal monitoring data, representative of diverse cultural populations and utilizing white-box ML algorithms, could be a valuable contribution to the development of diagnostic models for AD due to MCI. Clinical assessment and biomarkers, together with ML techniques, could prove pivotal in improving diagnostic tools for MCI due to AD., (© 2023. BioMed Central Ltd., part of Springer Nature.)
- Published
- 2023
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177. Divergence in Glyphosate Susceptibility between Steinchisma laxum Populations Involves a Pro106Ser Mutation.
- Author
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Hoyos V, Plaza G, Palma-Bautista C, Vázquez-García JG, Dominguez-Valenzuela JA, Alcántara-de la Cruz R, and De Prado R
- Abstract
The characterization of the mechanisms conferring resistance to herbicides in weeds is essential for developing effective management programs. This study was focused on characterizing the resistance level and the main mechanisms that confer resistance to glyphosate in a resistant (R) Steinchisma laxum population collected in a Colombian rice field in 2020. The R population exhibited 11.2 times higher resistance compared to a susceptible (S) population. Non-target site resistance (NTSR) mechanisms that reduced absorption and impaired translocation and glyphosate metabolism were not involved in the resistance to glyphosate in the R population. Evaluating the target site resistance mechanisms by means of enzymatic activity assays and EPSPS (5-enolpyruvylshikimate-3-phosphate synthase) gene sequencing, the mutation Pro106Ser was found in R plants of S. laxum . These findings are crucial for managing the spread of S. laxum resistance in Colombia. To effectively control S. laxum in the future, it is imperative that farmers use herbicides with different mechanisms of action in addition to glyphosate and adopt Integrate Management Programs to control weeds in rice fields of the central valleys of Colombia.
- Published
- 2023
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178. [Transcultural adaptation and validation of the DASH questionnaire in Mexican healthy volunteers and patients with neurogenic disorders of the upper extremity].
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Guadarrama-Ortiz P, Lule-Castillo SP, Capi-Casillas D, Román-Villagómez A, Prieto-Rivera ÁD, Ruiz-Rivero CO, Peña-Bartolone JD, Cruz-Zarrabal R, Vásquez-Núñez R, Montes de Oca-Vargas I, Garibay-Gracián A, Revilla-López DG, López-de la Cruz R, Sánchez-Mawcinitt MF, and Choreño-Parra JA
- Subjects
- Humans, Mexico, Male, Female, Adult, Middle Aged, Cross-Sectional Studies, Translations, Young Adult, Surveys and Questionnaires, Aged, Reproducibility of Results, Adolescent, Cultural Characteristics, Quality of Life, Disability Evaluation, Upper Extremity physiopathology
- Abstract
Background: The Disability of the Arm, Shoulder and Hand (DASH) questionnaire assesses the impact of upper extremity disorders on quality of life. However, its use in the Mexican population has not been formally validated., Objective: To conduct a cultural adaptation and validation of the DASH questionnaire to evaluate the perspective of patients with neurogenic disorders of the upper extremity regarding the impact on their quality of life., Method: We performed an adaptation of the Spanish version of the DASH questionnaire to the Mexican vocabulary and applied it to 478 volunteers. Ceiling effect, floor effect, item-total correlation, descriptive statistics of items and total score, internal consistency, precision, cross-sectional and longitudinal validity were estimated by comparing healthy controls and affected individuals with different disability levels., Results: Our DASH questionnaire version was equivalent to those previously approved and showed homogeneity of the items with respect to the total value of the questionnaire (Cronbach's alpha > 0.96). In addition, it showed an accuracy of 7.25 points and the crosssectional and longitudinal validity was documented with significant differences between groups and subgroups with distinct disability levels., Conclusions: The DASH questionnaire can be used with a high level of confidence in the Mexican population.
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- 2023
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179. Plasmid permissiveness of wastewater microbiomes can be predicted from 16S rRNA sequences by machine learning.
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Moradigaravand D, Li L, Dechesne A, Nesme J, de la Cruz R, Ahmad H, Banzhaf M, Sørensen SJ, Smets BF, and Kreft JU
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- RNA, Ribosomal, 16S genetics, Phylogeny, Permissiveness, Plasmids genetics, Gene Transfer, Horizontal, Wastewater, Microbiota
- Abstract
Motivation: Wastewater treatment plants (WWTPs) harbor a dense and diverse microbial community. They constantly receive antimicrobial residues and resistant strains, and therefore provide conditions for horizontal gene transfer (HGT) of antimicrobial resistance (AMR) determinants. This facilitates the transmission of clinically important genes between, e.g. enteric and environmental bacteria, and vice versa. Despite the clinical importance, tools for predicting HGT remain underdeveloped., Results: In this study, we examined to which extent water cycle microbial community composition, as inferred by partial 16S rRNA gene sequences, can predict plasmid permissiveness, i.e. the ability of cells to receive a plasmid through conjugation, based on data from standardized filter mating assays using fluorescent bio-reporter plasmids. We leveraged a range of machine learning models for predicting the permissiveness for each taxon in the community, representing the range of hosts a plasmid is able to transfer to, for three broad host-range resistance IncP plasmids (pKJK5, pB10, and RP4). Our results indicate that the predicted permissiveness from the best performing model (random forest) showed a moderate-to-strong average correlation of 0.49 for pB10 [95% confidence interval (CI): 0.44-0.55], 0.43 for pKJK5 (0.95% CI: 0.41-0.49), and 0.53 for RP4 (0.95% CI: 0.48-0.57) with the experimental permissiveness in the unseen test dataset. Predictive phylogenetic signals occurred despite the broad host-range nature of these plasmids. Our results provide a framework that contributes to the assessment of the risk of AMR pollution in wastewater systems., Availability and Implementation: The predictive tool is available as an application at https://github.com/DaneshMoradigaravand/PlasmidPerm., (© The Author(s) 2023. Published by Oxford University Press.)
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- 2023
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180. Utilization of Truncal Fascial Plane Nerve Blocks for Chronic Pain Management: A Narrative Review.
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Elsharydah A, De La Cruz R, Horani SM, and Xiao CY
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- Humans, Pain, Postoperative therapy, Retrospective Studies, Pain Management, Chronic Pain therapy, Nerve Block methods
- Abstract
Purpose of Review: Nerve blocks constitute an integral portion in the management of chronic pain. The widespread use of ultrasound imaging opened the door to a flood of newer blocks especially truncal plane nerve blocks. We reviewed the current medical literature for studies and case reports utilizing the two most common truncal plane nerve blocks, transversus abdominis plane and erector spinae plane blocks, to manage chronic pain., Recent Findings: We found some evidence, mostly in case reports and retrospective observational studies, that supports the use of transversus abdominis plane and erector spinae plane nerve blocks, usually with steroids, as a safe and valuable part of interdisciplinary management of chronic abdominal and chest walls pain. Ultrasound-guided truncal fascial plane nerve blocks are safe, easy to learn, and proven to help with post-operative acute pain management. Although limited, our current review provides evidence from the current medical literature regarding the utility of these blocks to manage some of the challenging chronic and cancer-related pain conditions of the trunk region., (© 2023. The Author(s), under exclusive licence to Springer Science+Business Media, LLC, part of Springer Nature.)
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- 2023
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181. Convergent Adaptation of Multiple Herbicide Resistance to Auxin Mimics and ALS- and EPSPS-Inhibitors in Brassica rapa from North and South America.
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Dominguez-Valenzuela JA, Palma-Bautista C, Vazquez-Garcia JG, Yanniccari M, Gigón R, Alcántara-de la Cruz R, De Prado R, and Portugal J
- Abstract
Herbicide-resistant weeds have been identified and recorded on every continent where croplands are available. Despite the diversity of weed communities, it is of interest how selection has led to the same consequences in distant regions. Brassica rapa is a widespread naturalized weed that is found throughout temperate North and South America, and it is a frequent weed among winter cereal crops in Argentina and in Mexico. Broadleaf weed control is based on glyphosate that is used prior to sowing and sulfonylureas or mimic auxin herbicides that are used once the weeds have already emerged. This study was aimed at determining whether a convergent phenotypic adaptation to multiple herbicides had occurred in B. rapa populations from Mexico and Argentina by comparing the herbicide sensitivity to inhibitors of the acetolactate synthase (ALS), 5-enolpyruvylshikimate-3-phosphate (EPSPS), and auxin mimics. Five B. rapa populations were analyzed from seeds collected in wheat fields in Argentina (Ar1 and Ar2) and barley fields in Mexico (Mx1, Mx2 and MxS). Mx1, Mx2, and Ar1 populations presented multiple resistance to ALS- and EPSPS-inhibitors and to auxin mimics (2,4-D, MCPA, and fluroxypyr), while the Ar2 population showed resistance only to ALS-inhibitors and glyphosate. Resistance factors ranged from 947 to 4069 for tribenuron-methyl, from 1.5 to 9.4 for 2,4-D, and from 2.7 to 42 for glyphosate. These were consistent with ALS activity, ethylene production, and shikimate accumulation analyses in response to tribenuron-methyl, 2,4-D, and glyphosate, respectively. These results fully support the evolution of the multiple- and cross-herbicide resistance to glyphosate, ALS-inhibitors, and auxinic herbicides in B. rapa populations from Mexico and Argentina.
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- 2023
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182. Target-site and non-target-site resistance mechanisms confer multiple resistance to glyphosate and 2,4-D in Carduus acanthoides.
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Palma-Bautista C, Belluccini P, Vázquez-García JG, Alcántara-de la Cruz R, Barro F, Portugal J, and De Prado R
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- Herbicide Resistance genetics, 3-Phosphoshikimate 1-Carboxyvinyltransferase genetics, 2,4-Dichlorophenoxyacetic Acid pharmacology, Glyphosate, Carduus metabolism, Herbicides pharmacology
- Abstract
Carduus acanthoides L. is mainly a range-land weed, but in the 2010s has begun to invade GM crop production systems in Córdoba (Argentina), where glyphosate and 2,4-D have been commonly applied. In 2020, C. acanthoides was found with multiple resistance to these two herbicides. In this study, the mechanisms that confer multiple resistance to glyphosate and 2,4-D, were characterized in one resistant (R) population of C. acanthoides in comparison to a susceptible (S) population. No differences in
14 C-herbicide absorption and translocation were observed between R and S populations. In addition,14 C-glyphosate was well translocated to the shoots (∼30%) and roots (∼16%) in both R and S plants, while most of14 C-2,4-D remained restricted in the treated leaf. Glyphosate metabolism did not contribute to resistance of the R population; however, as corroborated by malathion pretreatment, the mechanism of resistance to 2,4-D was enhanced metabolism (63% of the herbicide) mediated by cytochrome P450 (Cyt-P450). No differences were found in baseline EPSPS activity, copy number, and/or gene expression between the R and S populations, but a Pro-106-Ser mutation in EPSPS was present in the R population. Multiple resistances in the R population of C. acanthoides from Argentina were governed by target site resistance (a Pro-106 mutation for glyphosate) and non-target site resistance (Cyt-P450-based metabolic resistance for 2,4-D) mechanisms. This is the first case of resistance to glyphosate and 2,4-D confirmed for this weed in the world., Competing Interests: Declaration of Competing Interest The authors declare no conflicts of interest. Funders had no role in the design of the study, interpretation of data, or in decision to publish the results., (Copyright © 2023. Published by Elsevier Inc.)- Published
- 2023
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183. Enhanced detoxification via Cyt-P450 governs cross-tolerance to ALS-inhibiting herbicides in weed species of Centaurea.
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Palma-Bautista C, Vázquez-García JG, de Portugal J, Bastida F, Alcántara-de la Cruz R, Osuna-Ruiz MD, Torra J, and De Prado R
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- Plant Weeds metabolism, Cytochrome P-450 Enzyme System metabolism, Herbicides toxicity, Acetolactate Synthase metabolism, Centaurea metabolism
- Abstract
Centaurea is a genus of winter weeds with a similar life cycle and competitive traits, which occurs in small-grains production fields in the central-southern of the Iberian Peninsula. However, most of herbicides recommended for weed management in wheat show poor control of Centaurea species. This study summarizes the biology, herbicide tolerance to acetolactate synthase (ALS) inhibitors, and recommended chemical alternatives for the control of Centaurea species. Four species (C. cyanus L., C. diluta Aiton, C. melitensis L. and C. pullata L. subsp. baetica Talavera), taxonomically characterized, were found as the main important broadleaf weeds in small-grains production fields of the Iberian Peninsula. These species showed innate tolerance to tribenuron-methyl (TM), showing LD
50 values (mortality of 50% of a population) higher than the field dose of TM (20 g ai ha-1 ). The order of tolerance was C. diluta (LD50 = 702 g ha-1 ) ≫ C. pullata (LD50 = 180 g ha-1 ) ≫ C. cyanus (LD50 = 65 g ha-1 ) > C. melitensis (LD50 = 32 g ha-1 ). Centaurea cyanus and C. melitensis presented higher foliar retention (150-180 μL herbicide solution), absorption (14-28%) and subsequent translocation (7-12%) of TM with respect to the other two species. Centaurea spp. plants were able to metabolize14 C-TM into non-toxic forms (hydroxylated OH-metsulfuron-methyl and conjugated-metsulfuron-methyl), with cytochrome P450 (Cyt-P450) monooxygenases being responsible for herbicide detoxification. Centaurea cyanus and C. mellitensis metabolized up to 25% of TM, while C. diluta and C. pullata metabolized more than 50% of the herbicide. Centaurea species showed 80-100% survival when treated with of florasulam, imazamox and/or metsulfuron-methyl, i.e., these weeds present cross-tolerance to ALS inhibitors. In contrast, auxin mimics herbicides (2,4-D, clopyralid, dicamba, fluroxypir and MCPA) efficiently controlled the four Centaurea species. In addition, the mixture of ALS-inhibitors and auxin mimics also proved to be an interesting alternative for the control of Centaurea. These results show that plants of the genus Centaurea found in the winter cereal fields of the Iberian Peninsula have an innate tolerance to TM and cross-resistance to other ALS-inhibiting herbicides, governed by reduced absorption and translocation, but mainly by the metabolization of the herbicide via Cyt-P450., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2023 Elsevier Ltd. All rights reserved.)- Published
- 2023
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184. Chemical management of aquatic macrophytes under simulated floodplain condition in mesocosms.
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Cerveira Junior WR, Brunetti IA, Pereira PC, Alcántara-de la Cruz R, Cruz CD, and Carvalho LB
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- Weed Control, Pyrimidinones, Sulfonamides, Herbicides pharmacology
- Abstract
Floating natives ( Eichhornia crassipes and Pistia stratiotes ) and emergent exotic invasives ( Hedychium coronarium and Urochloa arrecta ) macrophytes grow as aquatic weeds in both natural and artificial floodplain areas in Brazil, where the chemical control should be researched. The herbicides glyphosate and saflufenacil, alone or mixed, were tested for weed control under simulated floodplain condition in mesocosms. Glyphosate (1,440 g ha
-1 ), saflufenacil (120 g ha-1 ), or glyphosate (1,440 g ha-1 ) + saflufenacil (42, 84, and 168 g ha-1 ) were applied firstly; and 75 days after treatment (DAT), glyphosate (1,680 g ha-1 ) was applied as a follow-up treatment to control plant regrowth. An herbicide-free check was also used. Echhinornia crassipes was the species most susceptible to the different herbicides. Saflufenacil alone presented the lowest control on the macrophytes (≤45%) from 7 to 75 DAT, and in most cases they presented high regrowth rates, i.e., this herbicide was the least effective treatment in reducing the dry mass production of the macrophyte community. Glyphosate alone presented low efficacy to control H. coronarium (30-65%), but for the other macrophytes, it presented control peaks ≥90%, maintaining control levels ≥50% until 75 DAT. Glyphosate + saflufenacil, regardless rate of saflufenacil, caused similar damage to glyphosate in E. crassipes and P. stratiotes ; however, in U. arrecta it caused 20-30% less injury. In contrast, these treatments provided the best control of H. coronarium . The complementary application of glyphosate was essential to improve the level of control of the first application, after plant regrowth.- Published
- 2023
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185. A Bayesian Mixture Cure Rate Model for Estimating Short-Term and Long-Term Recidivism.
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de la Cruz R, Fuentes C, and Padilla O
- Abstract
Mixture cure rate models have been developed to analyze failure time data where a proportion never fails. For such data, standard survival models are usually not appropriate because they do not account for the possibility of non-failure. In this context, mixture cure rate models assume that the studied population is a mixture of susceptible subjects who may experience the event of interest and non-susceptible subjects that will never experience it. More specifically, mixture cure rate models are a class of survival time models in which the probability of an eventual failure is less than one and both the probability of eventual failure and the timing of failure depend (separately) on certain individual characteristics. In this paper, we propose a Bayesian approach to estimate parametric mixture cure rate models with covariates. The probability of eventual failure is estimated using a binary regression model, and the timing of failure is determined using a Weibull distribution. Inference for these models is attained using Markov Chain Monte Carlo methods under the proposed Bayesian framework. Finally, we illustrate the method using data on the return-to-prison time for a sample of prison releases of men convicted of sexual crimes against women in England and Wales and we use mixture cure rate models to investigate the risk factors for long-term and short-term survival of recidivism.
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- 2022
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186. A Bayesian nonparametric model for classification of longitudinal profiles.
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Gaskins JT, Fuentes C, and De La Cruz R
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- Female, Humans, Markov Chains, Monte Carlo Method, Cluster Analysis, Probability, Bayes Theorem
- Abstract
Across several medical fields, developing an approach for disease classification is an important challenge. The usual procedure is to fit a model for the longitudinal response in the healthy population, a different model for the longitudinal response in the diseased population, and then apply Bayes' theorem to obtain disease probabilities given the responses. Unfortunately, when substantial heterogeneity exists within each population, this type of Bayes classification may perform poorly. In this article, we develop a new approach by fitting a Bayesian nonparametric model for the joint outcome of disease status and longitudinal response, and then we perform classification through the clustering induced by the Dirichlet process. This approach is highly flexible and allows for multiple subpopulations of healthy, diseased, and possibly mixed membership. In addition, we introduce an Markov chain Monte Carlo sampling scheme that facilitates the assessment of the inference and prediction capabilities of our model. Finally, we demonstrate the method by predicting pregnancy outcomes using longitudinal profiles on the human chorionic gonadotropin beta subunit hormone levels in a sample of Chilean women being treated with assisted reproductive therapy., (© The Author 2021. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.)
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- 2022
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187. Empowering People with Substance Use Disorders to Self-Administer Intravenous Antibiotics at Home.
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Hoff E, Ashraf B, de la Cruz R, Smartt J, Marambage K, and Bhavan K
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- Humans, Administration, Intravenous, Power, Psychological, Anti-Bacterial Agents therapeutic use, Substance-Related Disorders drug therapy
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- 2022
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188. Glyphosate excessive use chronically disrupts the shikimate pathway and can affect photosynthesis and yield in citrus trees.
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Martinelli R, Rufino LR Jr, de Melo AC, Alcántara-de la Cruz R, da Silva MFDGF, da Silva JR, Boaretto RM, Monquero PA, Mattos D Jr, and de Azevedo FA
- Subjects
- Carbon pharmacology, Carbon Dioxide metabolism, Glycine analogs & derivatives, Photosynthesis, Photosystem II Protein Complex metabolism, Plant Leaves metabolism, Shikimic Acid metabolism, Trees metabolism, Glyphosate, Citrus, Herbicides toxicity
- Abstract
Glyphosate excessive use is reported in Brazilian citrus orchards, whereas there is speculation about its consequences and the published studies are contradictory and inconclusive. This study aimed to describe the possible harmful effects by simulating glyphosate drift directly to the leaves of ∼4-yr-old citrus plants. As major results, glyphosate doses >360 g ae ha
-1 increased the shikimate accumulation in leaves (up to 2.3-times above control), which was increased after a second glyphosate application (up to 3.5-times above control), even after a 240-d interval. Interestingly, shikimate accumulation was occasionally related to a dose-response of the herbicide at specific times; however, the doses had their accumulation peak on determined dates. These accumulations were directly correlated to reduced net photosynthesis even months after the glyphosate sprays. Quantum productivity based on electron transport through the photosystem II and apparent electron transport reductions up to 17% were also observed during the entire experiment course. Similarly, quantum productivity based on CO2 assimilation of glyphosate sprayed leaves decreased up to four times compared to the control after the second application. Glyphosate doses >360 g ae ha-1 increased stomatal conductance and transpiration as the carboxylation efficiency decreased, evidencing a carbon drainage in the Calvin-Benson cycle. These metabolic and physiological disturbances suggest possible photooxidative damage and an increase in photorespiration, which may be a mitigation strategy by the citrus plants to glyphosate effects, by the cost of reducing the citrus fruit yield (up to 57%). It is concluded that glyphosate phytotoxicity damages citrus plants over time due to chronic disturbances in the shikimate pathway and photosynthesis, even when there are no symptoms. This study is the first report to demonstrate how glyphosate damages citrus trees beyond the shikimate pathway., Competing Interests: Declaration of competing interest The authors declare the following financial interests/personal relationships which may be considered as potential competing interests: Rodrigo Martinelli reports financial support was provided by Coordination of Higher Education Personnel Improvement. Fernando Alves de Azevedo reports financial support was provided by State of Sao Paulo Research Foundation. Dirceu de Mattos Jr reports financial support was provided by State of Sao Paulo Research Foundation. Fernando Alves de Azevedo reports financial support was provided by National Council for Scientific and Technological Development., (Copyright © 2022 Elsevier Ltd. All rights reserved.)- Published
- 2022
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189. Molecular Mechanisms of Herbicide Resistance in Weeds.
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Torra J and Alcántara-de la Cruz R
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- Plant Weeds genetics, Weed Control, Herbicide Resistance genetics, Herbicides pharmacology
- Abstract
Herbicides have become one of the most widespread weed-control tools in the world since their advent in the mid-20th century [...].
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- 2022
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190. Physiological and microbiological hormesis in sedge Eleocharis palustris induced by crude oil in phytoremediation of flooded clay soil.
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Chávez-Álvarez K, Del Carmen Rivera-Cruz M, Aceves-Navarro LA, Trujillo-Narcía A, García-de la Cruz R, and Vega-López A
- Subjects
- Biodegradation, Environmental, Clay, Hormesis, Hydrocarbons, Plants, Soil chemistry, Soil Microbiology, Eleocharis, Petroleum toxicity, Soil Pollutants chemistry, Soil Pollutants toxicity
- Abstract
Soil contamination with petroleum hydrocarbons affects plants and rhizospheric microorganisms. Microbial activity participates in important biochemical processes that stimulate, together with plants, the modification of toxic compounds for organisms. A nine-month experiment was set up to study the effect over time of oil on plant height (cm), formation of new plants, plant matter production (gravimetry), and population of rhizospheric microorganisms (serial dilution) in the sedge Eleocharis palustris. Removal of total petroleum hydrocarbons (soxhlet and gravimetry) from the soil was also evaluated. The means of the evaluated variables registered significant statistical differences (Duncan, p < 0.05) regarding the age of the plant and the amount of crude oil. There was a high correlation between oil and plant height (0.848) and with new plants (0.994). 60 mg oil dose promoted the greatest statistical difference in the amounts of roots and plant biomass (p < 0.05). E. palustris exposed to 60 and 75 mg of oil stimulated high densities of microalgae, actinomycetes, fungi, hydrocarbonoclastic bacteria and Pseudomonas spp; the overall ratio was 2:1 relative to natural attenuation. Plant and microorganism variables evaluated registered physiological and microbiological hormetic indices ≥1, showing a positive linear relationship. Natural attenuation was more efficient in removing crude oil. We conclude that E. palustris is tolerant to oil exposure. It is suggested to combine it with natural attenuation for the optimization of soils contaminated with crude oil., (© 2022. The Author(s), under exclusive licence to Springer Science+Business Media, LLC, part of Springer Nature.)
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- 2022
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191. Case report: Disease phenotype associated with simultaneous biallelic mutations in ABCA4 and USH2A due to uniparental disomy of chromosome 1.
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Villafuerte-De la Cruz R, Chacon-Camacho OF, Rodriguez-Martinez AC, Xilotl-De Jesus N, Arce-Gonzalez R, Rodriguez-De la Torre C, Valdez-Garcia JE, Rojas-Martinez A, and Zenteno JC
- Abstract
Inherited retinal diseases (IRDs) represent a spectrum of clinically and genetically heterogeneous disorders. Our study describes an IRD patient carrying ABCA4 and USH2A pathogenic biallelic mutations as a result of paternal uniparental disomy (UPD) in chromosome 1. The proband is a 9-year-old girl born from non-consanguineous parents. Both parents were asymptomatic and denied family history of ocular disease. Clinical history and ophthalmologic examination of the proband were consistent with Stargardt disease. Whispered voice testing disclosed moderate hearing loss. Next-generation sequencing and Sanger sequencing identified pathogenic variants in ABCA4 (c.4926C>G and c.5044_5058del) and USH2A (c.2276G>T). All variants were present homozygously in DNA from the proband and heterozygously in DNA from the father. No variants were found in maternal DNA. Further analysis of single nucleotide polymorphisms confirmed paternal UPD of chromosome 1. This is the first known patient with confirmed UPD for two recessively mutated IRD genes. Our study expands on the genetic heterogeneity of IRDs and highlights the importance of UPD as a mechanism of autosomal recessive disease in non-consanguineous parents. Moreover, a long-term follow-up is essential for the identification of retinal features that may develop as a result of USH2A -related conditions., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2022 Villafuerte-De la Cruz, Chacon-Camacho, Rodriguez-Martinez, Xilotl-De Jesus, Arce-Gonzalez, Rodriguez-De la Torre, Valdez-Garcia, Rojas-Martinez and Zenteno.)
- Published
- 2022
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192. Novel RB1 germline mutation in a healthy man.
- Author
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Ramos-Dávila EM, Garza-Garza LA, Villafuerte-de la Cruz R, Aguilar-Y-Mendez D, Morales-Garza HJ, Garza-Leon M, Ruiz-Lozano RE, and Ancona-Lezama D
- Subjects
- DNA Mutational Analysis, Exons, Female, Germ-Line Mutation, Humans, Infant, Male, Mutation, Penetrance, Retinoblastoma Binding Proteins genetics, Ubiquitin-Protein Ligases genetics, Retinal Neoplasms diagnosis, Retinal Neoplasms genetics, Retinal Neoplasms pathology, Retinoblastoma diagnosis, Retinoblastoma genetics, Retinoblastoma pathology
- Abstract
Background: Retinoblastoma (Rb) most frequently presents as a unilateral sporadic disease up to 40% of cases, however, arise from a monoallelic germline pathogenic variant. Only 10% of the germline mutations are inherited, and high penetrance is seen in up to 90% of these cases. As an effort to optimize counseling and screening, mutations are classified according to inheritance patterns. However, RB1 spectrum is highly heterogeneous, and information for unaffected carriers remains scarce., Materials and Methods: The Mexican family of a 5-month-old patient diagnosed with Rb was studied. The family consisted of five individuals (father, mother, and three siblings). Genetic testing using a next-generation sequencing assay targeting RB1 with oligonucleotide baits designed to capture its exons and 20 bases flanking intronic sequences was performed in every family member. Clinical history and a complete ophthalmological examination (best-corrected visual acuity, slit-lamp biomicroscopy, macular optical coherence tomography, fundus autofluorescence, optical coherence tomography angiography, and electrophysiological studies) were performed in members testing positive to RB1 mutation., Results: The father and her five-month-old daughter tested positive for a non-synonymous RB1 mutation c.459del (p.Lys154Serfs*21). The girl presented with bilateral retinoblastoma, successfully treated with cryotherapy and intravenous chemotherapy. The father had no relevant findings on imaging studies or ophthalmologic evaluation., Conclusions: This report describes a rare case of a novel low-penetrance RB1 germline mutation. Long-term follow-up of the father will include periodic evaluation of the eyes and orbits, and surveillance for systemic sarcoma and secondary malignancies. Implications for unaffected individuals need to be further studied.
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- 2022
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193. Local Well-Posedness to the Cauchy Problem for an Equation of the Nagumo Type.
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Lizarazo V, De la Cruz R, and Lizarazo J
- Abstract
In this paper, we show the local well-posedness for the Cauchy problem for the equation of the Nagumo type in this equation (1) in the Sobolev spaces H
s ( ℝ ). If D > 0, the local well-posedness is given for s > 1/2 and for s > 3/2 if D =0., Competing Interests: The authors declare that they have no conflicts of interest., (Copyright © 2022 Vladimir Lizarazo et al.)- Published
- 2022
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194. The Symbiotic Fungus Leucoagaricus gongylophorus (Möller) Singer (Agaricales, Agaricaceae) as a Target Organism to Control Leaf-Cutting Ants.
- Author
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Araújo S, Seibert J, Ruani A, Alcántara-de la Cruz R, Cruz A, Pereira A, Zandonai D, Forim M, Silva MF, Bueno O, and Fernandes J
- Abstract
Atta and Acromyrmex are the main genera of leaf-cutting ants present in North and South America, causing extensive damage to agroforestry. Control of the ants requires high handling costs with few effective methods available to decrease the losses. The symbiosis between the leaf-cutting ants and the fungus Leucoagaricus gongylophorus is essential for ant nest survival. Therefore, L. gongylophorus may be a key target in controlling leaf-cutting ants, since its reduction may cause an imbalance in the symbiosis necessary to maintain the nest. Among the options for natural fungal control, plant species are considered important sources of compounds belonging to several classes of natural products that show potential as antifungal agents. This review also presents studies that establish that the antagonist fungi from the Escovopsis and Trichoderma genera effectively reduce the development of L. gongylophorus . The development of nanostructured delivery systems, which have shown advantages over conventional formulations, is suggested for ant control; no commercial nanotechnology-based product has yet been developed, and this appears to be a new approach for future studies.
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- 2022
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195. Non-Target-Site Resistance Mechanisms Endow Multiple Herbicide Resistance to Five Mechanisms of Action in Conyza bonariensis .
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Palma-Bautista C, Vázquez-García JG, Domínguez-Valenzuela JA, Ferreira Mendes K, Alcántara de la Cruz R, Torra J, and De Prado R
- Subjects
- 3-Phosphoshikimate 1-Carboxyvinyltransferase, Herbicide Resistance, Acetolactate Synthase, Conyza, Herbicides pharmacology
- Abstract
The repeated use of herbicides can lead to the selection of multiple resistance weeds. Some populations of Conyza bonariensis occurring in olive groves from southern Spain have developed resistance to various herbicides. This study determined the resistance levels to 2,4-D, glyphosate, diflufenican, paraquat, and tribenuron-methyl in a putative resistant (R) C. bonariensis population, and the possible non-target-site resistance (NTSR) mechanisms involved were characterized. Resistance factors varied as follows: glyphosate (8.9), 2,4-D (4.8), diflufenican (5.0), tribenuron-methyl (19.6), and paraquat (85.5). Absorption of
14 C-glyphosate was up to 25% higher in the susceptible (S) population compared to the R one, but14 C-paraquat absorption was similar (up to 70%) in both populations. S plants translocated more than 60% of both14 C-glyphosate and14 C-paraquat toward shoots and roots, while R plants translocated less than 10%. The R population was able to metabolize 57% of the 2,4-D into nontoxic metabolites and 68% of the tribenuron-methyl into metsulfuron-methyl (10%), metsulfuron-methyl-hydroxylate (18%), and conjugate-metsulfuron-methyl (40%). Among the NTSR mechanisms investigated, absorption and translocation could be involved in glyphosate resistance, but only translocation for paraquat. Proofs of the presence of enhanced metabolism as a resistance mechanism were found for tribenuron-methyl and 2,4-D, but not for diflufenican. This research informs the first occurrence of multiple resistance to five herbicide classes (acetolactate synthase inhibitors, 5-enolpyruvylshikimate-3-phosphate synthase inhibitors, photosystem I electron diverters, photosystem II inhibitors, and synthetic auxin herbicides) in C. bonariensis .- Published
- 2021
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196. EMBRACE-WATERS statement: Recommendations for reporting of studies on antimicrobial resistance in wastewater and related aquatic environments.
- Author
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Hassoun-Kheir N, Stabholz Y, Kreft JU, de la Cruz R, Dechesne A, Smets BF, Romalde JL, Lema A, Balboa S, García-Riestra C, Torres-Sangiao E, Neuberger A, Graham D, Quintela-Baluja M, Stekel DJ, Graham J, Pruden A, Nesme J, Sørensen SJ, Hough R, and Paul M
- Abstract
Background: A One Health approach requires integrative research to elucidate antimicrobial resistance (AMR) in the environment and the risks it poses to human health. Research on this topic involves experts from diverse backgrounds and professions. Shortcomings exist in terms of consistent, complete, and transparent reporting in many environmental studies. Standardized reporting will improve the quality of scientific papers, enable meta-analyses and enhance the communication among different experts. In this study, we aimed to generate a consensus of reporting standards for AMR research in wastewater and related aquatic environments., Methods: Based on a risk of bias assessment of the literature in a systematic review, we proposed a set of study quality indicators. We then used a multistep modified Delphi consensus to develop the EMBRACE-WATERS statement (rEporting antiMicroBial ResistAnCE in WATERS), a checklist of recommendations for reporting in studies of AMR in wastewater and related aquatic environments., Findings: Consensus was achieved among a multidisciplinary panel of twenty-one experts in three steps. The developed EMBRACE-WATERS statement incorporates 21 items. Each item contains essential elements of high-quality reporting and is followed by an explanation of their rationale and a reporting-example. The EMBRACE-WATERS statement is primarily intended to be used by investigators to ensure transparent and comprehensive reporting of their studies. It can also guide peer-reviewers and editors in evaluation of manuscripts on AMR in the aquatic environment. This statement is not intended to be used to guide investigators on the methodology of their research., Interpretation: We are hopeful that this statement will improve the reporting quality of future studies of AMR in wastewater and related aquatic environments. Its uptake would generate a common language to be used among researchers from different disciplines, thus advancing the One Health approach towards understanding AMR spread across aquatic environments. Similar initiatives are needed in other areas of One Health research., Competing Interests: The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (© 2021 The Authors. Published by Elsevier B.V.)
- Published
- 2021
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197. Glyphosate resistance in Chloris radiata from colombian rice fields involves one target-site mechanism.
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Vázquez-García JG, Hoyos V, Plaza G, Palma-Bautista C, Alcántara-de la Cruz R, and De Prado R
- Subjects
- Colombia, Glycine analogs & derivatives, Glycine toxicity, Herbicide Resistance genetics, Glyphosate, Herbicides toxicity, Oryza genetics
- Abstract
At present, appearance of herbicide resistant weeds is not new because repeated herbicide treatments per agricultural year/cycle are usual in both perennial and annual crops worldwide. Characterizing resistance mechanisms implied in each herbicide resistant weed is the best tool and the basis to develop integrated weed management (IWM) strategies. The main resistance mechanisms which confer low sensibility to glyphosate in a previously confirmed glyphosate-resistant Chloris radiata population (ChrR), occurring in Colombian rice fields, were characterized. Pure line selection by clone plants showed high resistance levels in ChrR. Comparing with GR
50 and LD50 values, ChrR was 9.6 and 10.8 times more resistant with respect to a representative susceptible population (ChrS). The nontarget site mechanisms reduced glyphosate absorption and translocation did not contribute to the glyphosate resistance of the ChrR population. However, enzyme activity assays and DNA sequencing demonstrated that at least one target-site resistance mechanism is involved in such resistance. All ten ChrR plants tested had the amino acid substitution Pro-106-Ser. The results may be crucial to decrease the resistance distribution of C. radiata in Colombia by implementing IWM programs. The change in weed control strategies in rice fields from Colombia must include herbicides with different mode of action from glyphosate and non chemical methods to preserve the useful life of glyphosate longer for weed control in the country., (Copyright © 2021 Elsevier Ltd. All rights reserved.)- Published
- 2021
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198. Non-Target Site Mechanisms Endow Resistance to Glyphosate in Saltmarsh Aster ( Aster squamatus ).
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Domínguez-Valenzuela JA, Alcántara-de la Cruz R, Palma-Bautista C, Vázquez-García JG, Cruz-Hipolito HE, and De Prado R
- Abstract
Of the six-glyphosate resistant weed species reported in Mexico, five were found in citrus groves. Here, the glyphosate susceptibility level and resistance mechanisms were evaluated in saltmarsh aster ( Aster squamatus ), a weed that also occurs in Mexican citrus groves. The R population accumulated 4.5-fold less shikimic acid than S population. S plants hardly survived at 125 g ae ha
-1 while most of the R plants that were treated with 1000 g ae ha-1 , which suffered a strong growth arrest, showed a vigorous regrowth from the third week after treatment. Further, 5-enolpyruvylshikimate-3-phosphate basal and enzymatic activities did not diverge between populations, suggesting the absence of target-site resistance mechanisms. At 96 h after treatment, R plants absorbed ~18% less glyphosate and maintained 63% of the14 C-glyphsoate absorbed in the treated leaf in comparison to S plants. R plants metabolized twice as much (72%) glyphosate to amino methyl phosphonic acid and glyoxylate as the S plants. Three non-target mechanisms, reduced absorption and translocation and increased metabolism, confer glyphosate resistance saltmarsh aster. This is the first case of glyphosate resistance recorded for A. squamatus in the world.- Published
- 2021
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199. Glyphosate ban in Mexico: potential impacts on agriculture and weed management.
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Alcántara-de la Cruz R, Cruz-Hipolito HE, Domínguez-Valenzuela JA, and De Prado R
- Subjects
- Agriculture, Crops, Agricultural genetics, Glycine analogs & derivatives, Humans, Mexico, Plants, Genetically Modified, Weed Control, Glyphosate, Herbicide Resistance, Herbicides pharmacology
- Abstract
Since glyphosate was classified as potentially carcinogenic by the International Agency for Research on Cancer, public debate regarding the environmental impact and health risks from its use has intensified. Almost all regulatory agencies throughout the world have concluded that the judicious use of glyphosate does not pose risks to the environment and human health. However, on the last day of 2020 the Mexican government decreed a ban of this herbicide beginning January, 2024. In current Mexican agriculture there are no safer chemical and/or other weed management technologies that allow for the economical substitution of glyphosate for weed control. Many Mexican weed scientists agree that glyphosate use should be reduced, but not banned outright. This decree could have more negative economic and social consequences as well as environmental and human health risks than benefits, which could compromise the country's food and public security. Crop yields are projected by some to decline by up to 40% with this ban, increasing food prices, making food less accessible to low-income consumers. In addition, a black market for the smuggling and illegal sale of glyphosate is possible. The possible environmental, economic and social impacts caused by the glyphosate ban in Mexico are discussed, emphasizing the impact on weed management. © 2021 Society of Chemical Industry., (© 2021 Society of Chemical Industry.)
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- 2021
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200. Point Mutations and Cytochrome P450 Can Contribute to Resistance to ACCase-Inhibiting Herbicides in Three Phalaris Species.
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Vázquez-García JG, Torra J, Palma-Bautista C, Alcántara-de la Cruz R, and Prado R
- Abstract
Species of Phalaris have historically been controlled by acetyl-coenzyme A carboxylase (ACCase)-inhibiting herbicides; however, overreliance on herbicides with this mechanism of action has resulted in the selection of resistant biotypes. The resistance to ACCase-inhibiting herbicides was characterized in Phalaris brachystachys , Phalaris minor, and Phalaris paradoxa samples collected from winter wheat fields in northern Iran. Three resistant (R) biotypes, one of each Phalaris species, presented high cross-resistance levels to diclofop-methyl, cycloxydim, and pinoxaden, which belong to the chemical families of aryloxyphenoxypropionates (FOPs), cyclohexanediones (DIMs), and phenylpyrazolines (DENs), respectively. The metabolism of
14 C-diclofop-methyl contributed to the resistance of the P. brachystachys R biotype, while no evidence of herbicide metabolism was found in P. minor or P. paradoxa . ACCase in vitro assays showed that the target sites were very sensitive to FOP, DIM, and DEN herbicides in the S biotypes of the three species, while the R Phalaris spp. biotypes presented different levels of resistance to these herbicides. ACCase gene sequencing confirmed that cross-resistance in Phalaris species was conferred by specific point mutations. Resistance in the P. brachystachys R biotype was due to target site and non-target-site resistance mechanisms, while in P. minor and P. paradoxa , only an altered target site was found.- Published
- 2021
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