504 results on '"David, J.S."'
Search Results
152. BMP-1/tolloid-like proteinases synchronize matrix assembly with growth factor activation to promote morphogenesis and tissue remodeling
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Vadon-Le Goff, Sandrine, primary, Hulmes, David J.S., additional, and Moali, Catherine, additional
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- 2015
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153. A tree-based approach for modelling interception loss from evergreen oak mediterranean savannas
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Pereira, F.L., Gasch, J.H.C., David, J.S., David, T.S., Monteiro, P.R., and Valente, F.
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Modelling interception loss ,Forestry - Abstract
Evaporation of rainfall intercepted by tree canopies is usually an important part of the overall water balance of forested catchments and there have been many studies dedicated to measuring and modelling rainfall interception loss. These studies have mainly been conducted in dense forests; there have been few studies on the very sparse forests which are common in dry and semi-arid areas. Water resources are scarce in these areas making sparse forests particularly important. Methods for modelling interception loss are thus required to support sustainable water management in those areas. In very sparse forests, trees occur as widely spaced individuals rather than as a continuous forest canopy. We therefore suggest that interception loss for this vegetation type can be more adequately modelled if the overall forest evaporation is derived by scaling up the evaporation from individual trees. The evaporation rate for a single tree can be estimated using a simple Dalton-type diffusion equation for water vapour as long as its surface temperature is known. From theory, this temperature is shown to be dependent upon the available energy and windspeed. However, the surface temperature of a fully saturated tree crown, under rainy conditions, should approach the wet bulb temperature as the radiative energy input to the tree reduces to zero. This was experimentally confirmed from measurements of the radiation balance and surface temperature of an isolated tree crown. Thus, evaporation of intercepted rainfall can be estimated using an equation which only requires knowledge of the air dry and wet bulb temperatures and of the bulk tree-crown aerodynamic conductance. This was taken as the basis of a new approach for modelling interception loss from savanna-type woodland, i.e. by combining the Dalton-type equation with the Gash’s analytical model to estimate interception loss from isolated trees. This modelling approach was tested using data from two Mediterranean savanna-type oak woodlands in southern Portugal. For both sites, simulated interception loss agreed well with the observations indicating the adequacy of this new methodology for modelling interception loss by isolated trees in savanna-type ecosystems. Furthermore, the proposed approach is physically based and requires only a limited amount of data. Interception loss for the entire forest can be estimated by scaling up the evaporation from individual trees accounting for the number of trees per unit area.
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- 2010
154. Collagen Diversity, Synthesis and Assembly
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David J.S. Hulmes
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In vivo ,Chemistry ,Extracellular ,Lysyl oxidase ,SUPERFAMILY ,macromolecular substances ,Intracellular ,In vitro ,Triple helix ,Cell biology ,Supramolecular assembly - Abstract
The vertebrate collagen superfamily now includes over 50 collagens and collagen-like proteins. Here, their different structures are described, as well as their diverse forms of supramolecular assembly. Also presented here are the various steps in collagen biosynthesis, both intracellular and extracellular, and the functions of the collagen-specific post-translational modifications. Assembly of collagen fibrils, both in vitro and in vivo, is reviewed, including the mechanisms that control this process and the interactions involved. Finally, recent developments in the supramolecular assembly of collagen-like peptides are discussed.
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- 2008
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155. Procollagen type I C-proteinase enhancer is a naturally occurring connective tissue glycoprotein
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Efrat Kessler, David J.S. Hulmes, A. Paul Mould, and Deleage, Gilbert
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Immunoblotting ,Biophysics ,Connective tissue ,Biology ,Biochemistry ,Antibodies ,Bone morphogenetic protein 1 ,Bone Morphogenetic Protein 1 ,Tendons ,Mice ,In vivo ,Endopeptidases ,[SDV.BBM] Life Sciences [q-bio]/Biochemistry, Molecular Biology ,medicine ,Animals ,Trypsin ,Enhancer ,Molecular Biology ,Cells, Cultured ,Glycoproteins ,chemistry.chemical_classification ,Metalloendopeptidases ,Skeletal muscle ,Procollagen N-Endopeptidase ,Cell Biology ,Fibroblasts ,musculoskeletal system ,Molecular biology ,Rats ,Enzyme Activation ,Molecular Weight ,Procollagen peptidase ,medicine.anatomical_structure ,chemistry ,Connective Tissue ,Organ Specificity ,Bone Morphogenetic Proteins ,Electrophoresis, Polyacrylamide Gel ,Glycoprotein - Abstract
Using antibodies to the procollagen C-proteinase enhancer of mouse fibroblast culture medium, we have screened by immunoblotting extracts of several post natal mouse and rat tissues for the presence of the enhancer antigen. All rodent connective tissues were relatively rich in enhancer; lower amounts were found in skeletal muscle and heart and essentially no enhancer was detected in kidney, liver or brain. The amounts of enhancer in mouse tendon and calvaria extracts were age related, with highest amounts in 11 and 19 d tendons and in 1 d calvaria-the times of rapid growth of these organs. The results suggest that procollagen C-proteinase enhancer is a specific connective tissue glycoprotein that is likely to regulate procollagen processing in vivo.Using antibodies to the procollagen C-proteinase enhancer of mouse fibroblast culture medium, we have screened by immunoblotting extracts of several post natal mouse and rat tissues for the presence of the enhancer antigen. All rodent connective tissues were relatively rich in enhancer; lower amounts were found in skeletal muscle and heart and essentially no enhancer was detected in kidney, liver or brain. The amounts of enhancer in mouse tendon and calvaria extracts were age related, with highest amounts in 11 and 19 d tendons and in 1 d calvaria-the times of rapid growth of these organs. The results suggest that procollagen C-proteinase enhancer is a specific connective tissue glycoprotein that is likely to regulate procollagen processing in vivo.
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- 1990
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156. An ultrafiltration assay for lysyl oxidase
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David J.S. Hulmes, David R. Shackleton, and Deleage, Gilbert
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Swine ,Lysine ,Biophysics ,Ultrafiltration ,Lysyl oxidase ,Chick Embryo ,Tritium ,Biochemistry ,Protein-Lysine 6-Oxidase ,chemistry.chemical_compound ,[SDV.BBM] Life Sciences [q-bio]/Biochemistry, Molecular Biology ,Animals ,Urea ,Molecular Biology ,chemistry.chemical_classification ,Chromatography ,Dose-Response Relationship, Drug ,biology ,Substrate (chemistry) ,Cell Biology ,Enzyme assay ,Elastin ,Ultrafiltration (renal) ,Enzyme ,chemistry ,Enzyme inhibitor ,Aminopropionitrile ,biology.protein ,Amino Acid Oxidoreductases ,Chickens - Abstract
A modification of the original microdistillation assay for lysyl oxidase is described in which Amicon C-10 microconcentrators are used to separate, by ultrafiltration, the 3H-labeled products released from a [4,5-3H]-lysine-labeled elastin substrate. Enzyme activity is determined by scintillation counting of the ultrafiltrate, after subtraction of radioactivity released in the presence of beta-aminopropionitrile, a specific inhibitor of the enzyme. Conditions are described which optimize both the sensitivity and the efficient use of substrate. The assay shows linear inhibition of activity in up to 1 M urea; hence, as the enzyme is normally diluted in the assay, samples in 6 M urea can be assayed directly, without prior dialysis, and corrected for partial inhibition. Comparable results are obtained when enzyme activity is assayed by ultrafiltration or microdistillation. The assay is simple and convenient and, by using disposable containers throughout, it eliminates the need for time-consuming decontamination of radioactive glassware.A modification of the original microdistillation assay for lysyl oxidase is described in which Amicon C-10 microconcentrators are used to separate, by ultrafiltration, the 3H-labeled products released from a [4,5-3H]-lysine-labeled elastin substrate. Enzyme activity is determined by scintillation counting of the ultrafiltrate, after subtraction of radioactivity released in the presence of beta-aminopropionitrile, a specific inhibitor of the enzyme. Conditions are described which optimize both the sensitivity and the efficient use of substrate. The assay shows linear inhibition of activity in up to 1 M urea; hence, as the enzyme is normally diluted in the assay, samples in 6 M urea can be assayed directly, without prior dialysis, and corrected for partial inhibition. Comparable results are obtained when enzyme activity is assayed by ultrafiltration or microdistillation. The assay is simple and convenient and, by using disposable containers throughout, it eliminates the need for time-consuming decontamination of radioactive glassware.
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- 1990
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157. A Kinetic Analysis of Type I Procollagen Processing in Developing Chick Embryo Cornea
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Sally J. Mellor, David J.S. Hulmes, and Gordon L. Atkins
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medicine.anatomical_structure ,History and Philosophy of Science ,Chemistry ,Type I Procollagen ,General Neuroscience ,Cornea ,Kinetic analysis ,medicine ,Embryo ,Anatomy ,General Biochemistry, Genetics and Molecular Biology ,Cell biology - Published
- 1990
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158. Assembly of Type I Collagen Fibrils de Novo by the Specific Enzymic Cleavage of pC Collagen
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Darwin J. Prockop, David J.S. Hulmes, Karl E. Kadler, and Y Hojima
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Macromolecular Substances ,Chemistry ,General Neuroscience ,Fibrillogenesis ,Fibroblasts ,Fibril ,Cleavage (embryo) ,General Biochemistry, Genetics and Molecular Biology ,Kinetics ,Microscopy, Electron ,Collagen, type I, alpha 1 ,History and Philosophy of Science ,Biochemistry ,Connective Tissue ,Connective tissue metabolism ,Collagen metabolism ,Humans ,Collagen ,Cells, Cultured ,Procollagen ,Type I collagen ,Skin - Published
- 1990
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159. Characteristics and outcomes of malpractice claims after tonsillectomy
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JD David J.S. Ziff, Luc G. T. Morris, Shari D. Reitzen, Arnold Komisar, Seth M. Lieberman, David R. Edelstein, and Alvin Katz
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Adult ,medicine.medical_specialty ,medicine.medical_treatment ,Insurance Claim Review ,New York ,Indemnity ,Insurance claims ,Anesthesiology ,Malpractice ,medicine ,Humans ,Major injury ,Child ,health care economics and organizations ,Tonsillectomy ,Plaintiff ,business.industry ,General surgery ,United States ,Surgery ,Otorhinolaryngology ,General Surgery ,Settlement (litigation) ,business - Abstract
Objective To characterize the background and outcomes of tonsillectomy malpractice claims. Methods Review of 69 New York State insurance claims (Part I) and 87 national court trials (Part II) alleging injury after tonsillectomy. Results Part I. New York State insurance cases were most commonly discontinued (44%) or settled (42%) before trial. Compensations with a settlement or verdict were made in 48 percent of cases. Part II. Death or major injury occurred in 52 percent of insurance cases, with a mean award of $403,656 being made to plaintiffs. Of cases reaching trial, 60 percent of plaintiffs were compensated. Awards against anesthesiologists were more frequent and higher than against surgeons ($5 million vs $839,650). Death or major injury occurred in 52 percent of court cases, resulting in mean indemnity of $3.8 million. Most cases of death or major injury were attributable to airway complications. Conclusions Approximately half of both New York state claims and court cases involved death or devastating morbidity, mostly related to airway complications, resulting in large awards. Tonsillectomy is a source of uncommon but potentially high-dollar–value litigation exposure to the surgeon, often attributable to non-surgical complications.
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- 2007
160. Procollagen C-proteinase enhancer-1 (PCPE-1) interacts with beta2-microglobulin (beta2-m) and may help initiate beta2-m amyloid fibril formation in connective tissues
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Kazushi Nakao, Kousuke Fukuoka, David J.S. Hulmes, Akihiro Yasuhara, Shigeru Akagi, Joni D. Mott, Jun Wada, Hironobu Naiki, Haruo Ichikawa, Yuji Takatori, Bernard Font, Atsuko Nakatsuka, Hirofumi Makino, Hisanori Morimoto, and Tadakazu Ookoshi
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Amyloid ,Immunoprecipitation ,Molecular Sequence Data ,Bone Morphogenetic Protein 1 ,chemistry.chemical_compound ,Two-Hybrid System Techniques ,Humans ,Amino Acid Sequence ,Molecular Biology ,Gene Library ,Glycoproteins ,Extracellular Matrix Proteins ,Dose-Response Relationship, Drug ,Chemistry ,Beta-2 microglobulin ,cDNA library ,Metalloendopeptidases ,Molecular biology ,In vitro ,Recombinant Proteins ,Protein Structure, Tertiary ,Procollagen peptidase ,Enhancer Elements, Genetic ,Biochemistry ,Bone Morphogenetic Proteins ,Thioflavin ,beta 2-Microglobulin ,Type I collagen ,Protein Binding - Abstract
Dialysis related amyloidosis (DRA) is a progressive and serious complication in patients under long-term hemodialysis and mainly leads to osteo-articular diseases. Although beta(2)-microglobulin (beta2-m) is the major structural component of beta2-m amyloid fibrils, the initiation of amyloid formation is not clearly understood. Here, we have identified procollagen C-proteinase enhancer-1 (PCPE-1) as a new interacting protein with beta2-m by screening a human synovium cDNA library. The interaction of beta2-m with full-length PCPE-1 was confirmed by immunoprecipitation, solid-phase binding and pull-down assays. By yeast two-hybrid analysis and pull-down assay, beta2-m appeared to interact with PCPE-1 via the NTR (netrin-like) domain and not via the CUB (C1r/C1s, Uegf and BMP-1) domain region. In synovial tissues derived from hemodialysis patients with DRA, beta2-m co-localized and formed a complex with PCPE-1. beta2-m did not alter the basal activity of bone morphogenetic protein-1/procollagen C-proteinase (BMP-1/PCP) nor BMP-1/PCP activity enhanced by PCPE-1. PCPE-1 did not stimulate beta2-m amyloid fibril formation from monomeric beta2-m in vitro under acidic and neutral conditions as revealed by thioflavin T fluorescence spectroscopy and electron microscopy. Since PCPE-1 is abundantly expressed in connective tissues rich in type I collagen, it may be involved in the initial accumulation of beta2-m in selected tissues such as tendon, synovium and bone. Furthermore, since such preferential deposition of beta2-m may be linked to subsequent beta2-m amyloid fibril formation, the disruption of the interaction between beta2-m and PCPE-1 may prevent beta2-m amyloid fibril formation and therefore PCPE-1 could be a new target for the treatment of DRA.
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- 2007
161. Development of a hemicornea from human primary cell cultures for pharmacotoxicology testing
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V. Andre, Vanessa Barbaro, Virginie Justin, Odile Damour, E. Di Iorio, C. Auxenfans, N. Bechetoille, David J.S. Hulmes, Nicolas Builles, Institut de biologie et chimie des protéines [Lyon] (IBCP), Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Centre National de la Recherche Scientifique (CNRS), and Deleage, Gilbert
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Collagen Type IV ,Stromal cell ,Pharmacotoxicology ,Epithelial cell morphogenesis ,Health, Toxicology and Mutagenesis ,Mesenchyme ,Cell Culture Techniques ,Animal Testing Alternatives ,Toxicology ,Cornea ,Extracellular matrix ,03 medical and health sciences ,0302 clinical medicine ,Laminin ,[SDV.BBM] Life Sciences [q-bio]/Biochemistry, Molecular Biology ,medicine ,Humans ,[SDV.BBM]Life Sciences [q-bio]/Biochemistry, Molecular Biology ,Cells, Cultured ,030304 developmental biology ,Basement membrane ,0303 health sciences ,biology ,Chemistry ,Stem Cells ,Hemidesmosome ,Epithelium, Corneal ,Membrane Proteins ,Epithelial Cells ,Cell Biology ,Hemidesmosomes ,Extracellular Matrix ,Cell biology ,medicine.anatomical_structure ,030221 ophthalmology & optometry ,biology.protein ,Stromal Cells ,Cell Adhesion Molecules ,Biomarkers - Abstract
International audience; We report the reconstruction and characterization of a hemicornea (epithelialized stroma), using primary human cells, for use in research and as an alternative to the use of animals in pharmacotoxicology testing. To create a stromal equivalent, keratocytes from human corneas were cultured in collagen-glycosaminoglycan-chitosan foams. Limbal stem cell-derived epithelial cells were seeded on top of these, giving rise to hemi-corneas. The epithelium appeared morphologically similar to its physiological counterpart, as shown by the basal cell expression of p63 isoforms including, in some cases, the stem cell marker p63DeltaNalpha, and the expression of keratin 3 and 14-3-3sigma in the upper cell layers. In addition, the cuboidal basal epithelial cells were anchored to a basement membrane containing collagen IV, laminin 5, and hemidesmosomes. In the stromal part, the keratocytes colonized the porous scaffold, formed a network of interconnecting cells, and synthesized an ultrastructurally organized extracellular matrix (ECM) containing collagen types I, V, and VI. Electron microscopy showed the newly synthesized collagen fibrils to have characteristic periodic striations, with diameters and interfibril spacings similar to those found in natural corneas. Compared to existing models for corneal pharmacotoxicology testing, this new model more closely approaches physiological conditions by including the inducing effects of mesenchyme and cell-matrix interactions on epithelial cell morphogenesis.We report the reconstruction and characterization of a hemicornea (epithelialized stroma), using primary human cells, for use in research and as an alternative to the use of animals in pharmacotoxicology testing. To create a stromal equivalent, keratocytes from human corneas were cultured in collagen-glycosaminoglycan-chitosan foams. Limbal stem cell-derived epithelial cells were seeded on top of these, giving rise to hemi-corneas. The epithelium appeared morphologically similar to its physiological counterpart, as shown by the basal cell expression of p63 isoforms including, in some cases, the stem cell marker p63DeltaNalpha, and the expression of keratin 3 and 14-3-3sigma in the upper cell layers. In addition, the cuboidal basal epithelial cells were anchored to a basement membrane containing collagen IV, laminin 5, and hemidesmosomes. In the stromal part, the keratocytes colonized the porous scaffold, formed a network of interconnecting cells, and synthesized an ultrastructurally organized extracellular matrix (ECM) containing collagen types I, V, and VI. Electron microscopy showed the newly synthesized collagen fibrils to have characteristic periodic striations, with diameters and interfibril spacings similar to those found in natural corneas. Compared to existing models for corneal pharmacotoxicology testing, this new model more closely approaches physiological conditions by including the inducing effects of mesenchyme and cell-matrix interactions on epithelial cell morphogenesis.
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- 2007
162. Enzymatic cleavage specificity of the proalpha1(V) chain processing analysed by site-directed mutagenesis
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Florence Ruggiero, Frédéric Delacoux, Christelle Bonod-Bidaud, Elisabeth Vaganay, David J.S. Hulmes, Mickaël Beraud, Bernard Font, Deleage, Gilbert, Matrice extracellulaire et régulations cellulaires (MERC), Université de Reims Champagne-Ardenne (URCA)-Centre National de la Recherche Scientifique (CNRS), Institut de biologie et chimie des protéines [Lyon] (IBCP), Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Centre National de la Recherche Scientifique (CNRS), and Maquart, François-Xavier
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animal structures ,Molecular Sequence Data ,Biology ,Cleavage (embryo) ,Biochemistry ,Bone morphogenetic protein 1 ,Bone Morphogenetic Protein 1 ,Mice ,03 medical and health sciences ,0302 clinical medicine ,[SDV.BBM] Life Sciences [q-bio]/Biochemistry, Molecular Biology ,Animals ,Humans ,[SDV.BBM]Life Sciences [q-bio]/Biochemistry, Molecular Biology ,Amino Acid Sequence ,Site-directed mutagenesis ,Molecular Biology ,Peptide sequence ,Furin ,Cells, Cultured ,030304 developmental biology ,0303 health sciences ,Life Sciences ,Antibodies, Monoclonal ,Metalloendopeptidases ,Cell Biology ,Peptide Fragments ,Recombinant Proteins ,Procollagen peptidase ,030220 oncology & carcinogenesis ,Bone Morphogenetic Proteins ,embryonic structures ,Mutagenesis, Site-Directed ,biology.protein ,Rabbits ,Proprotein Convertases ,Collagen Type V ,Sequence Alignment ,Research Article ,Triple helix - Abstract
International audience; The proteolytic processing of procollagen V is complex and depends on the activity of several enzymes among which the BMP-1 (bone morphogenetic protein-1)/tolloid metalloproteinase and the furin-like proprotein convertases. Few of these processing interactions could have been predicted by analysing the presence of conserved consensus sequences in the proalpha1(V) chain. In the present study we opted for a cell approach that allows a straightforward identification of processing interactions. A construct encompassing the complete N-terminal end of the proalpha1(V) chain, referred to as Nalpha1, was recombinantly expressed to be used for enzymatic assays and for antibody production. Structural analysis showed that Nalpha1 is a monomer composed of a compact globule and an extended tail, which correspond respectively to the non-collagenous Nalpha1 subdomains, TSPN-1 (thrombospondin-1 N-terminal domain-like) and the variable region. Nalpha1 was efficiently cleaved by BMP-1 indicating that the triple helix is not required for enzyme activity. By mutating residues flanking the cleavage site, we showed that the aspartate residue at position P2' is essential for BMP-1 activity. BMP-1 activity at the C-terminal end of the procollagen V was assessed by generating a furin double mutant (R1584A/R1585A). We showed that, in absence of furin activity, BMP-1 is capable of processing the C-propeptide even though less efficiently than furin. Altogether, our results provide new relevant information on this complex and poorly understood mechanism of enzymatic processing in procollagen V function.The proteolytic processing of procollagen V is complex and depends on the activity of several enzymes among which the BMP-1 (bone morphogenetic protein-1)/tolloid metalloproteinase and the furin-like proprotein convertases. Few of these processing interactions could have been predicted by analysing the presence of conserved consensus sequences in the proalpha1(V) chain. In the present study we opted for a cell approach that allows a straightforward identification of processing interactions. A construct encompassing the complete N-terminal end of the proalpha1(V) chain, referred to as Nalpha1, was recombinantly expressed to be used for enzymatic assays and for antibody production. Structural analysis showed that Nalpha1 is a monomer composed of a compact globule and an extended tail, which correspond respectively to the non-collagenous Nalpha1 subdomains, TSPN-1 (thrombospondin-1 N-terminal domain-like) and the variable region. Nalpha1 was efficiently cleaved by BMP-1 indicating that the triple helix is not required for enzyme activity. By mutating residues flanking the cleavage site, we showed that the aspartate residue at position P2' is essential for BMP-1 activity. BMP-1 activity at the C-terminal end of the procollagen V was assessed by generating a furin double mutant (R1584A/R1585A). We showed that, in absence of furin activity, BMP-1 is capable of processing the C-propeptide even though less efficiently than furin. Altogether, our results provide new relevant information on this complex and poorly understood mechanism of enzymatic processing in procollagen V function.
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- 2007
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163. Tissue engineering of the cornea: orthogonal scaffold of magnetically aligned collagen lamellae for corneal stroma reconstruction
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Odile Damour, Nicolas Builles, Jim Torbet, Muriel Roulet, Åke Oldberg, Marilyne Malbouyres, Florence Ruggiero, Virginie Justin, David J.S. Hulmes, Institut de biologie et chimie des protéines [Lyon] (IBCP), Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Centre National de la Recherche Scientifique (CNRS), and Deleage, Gilbert
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0303 health sciences ,Scaffold ,Materials science ,Tissue Engineering ,Tissue Scaffolds ,030306 microbiology ,Corneal Stroma ,Matrix (biology) ,Collagen Type I ,Collagen fibril ,Normal cell ,Magnetics ,03 medical and health sciences ,0302 clinical medicine ,medicine.anatomical_structure ,Tissue engineering ,Stroma ,Cornea ,[SDV.BBM] Life Sciences [q-bio]/Biochemistry, Molecular Biology ,030221 ophthalmology & optometry ,medicine ,[SDV.BBM]Life Sciences [q-bio]/Biochemistry, Molecular Biology ,Gels ,Type I collagen ,Biomedical engineering - Abstract
The creation of 3D scaffolds that mimic the structure of physiological tissue required for normal cell function is a major bio engineering challenge. For corneal stroma reconstruction this necessitates the creation of a stroma-like scaffold consisting of a stack of orthogonally disposed sheets of aligned collagen fibrils. This study demonstrates that such a scaffold can be built up using magnetic alignment. By allowing neutralized acid soluble type I collagen to gel in a horizontal magnetic field (7 T) and by combining a series of gelation-rotation-gelation cycles, a scaffold of orthogonal lamellae composed of aligned collagen fibrils has been formed. Although initially dilute the gels can be concentrated without noticeable loss in orientation. The gels are translucent but their transparency can be greatly improved by the addition of proteoglycans to the gel-forming solution. Keratocytes align by contact guidance along the direction of collagen fibrils and respect the orthogonal design of the collagen template as they penetrate into the bulk of the 3- dimensional matrix. The scaffold is a significant step towards the creation of a corneal substitute with properties resembling those of native corneal stroma.
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- 2007
164. The crystal structure of the Bacillus anthracis spore surface protein BclA shows remarkable similarity to mammalian proteins
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Sylvie Salamitou, Ignacio Garcia-Verdugo, Anita Lewit-Bentley, Richard Chaby, Stéphane Réty, David J.S. Hulmes, Françoise Le Hégarat, Deleage, Gilbert, Institut de biologie et chimie des protéines [Lyon] (IBCP), Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Centre National de la Recherche Scientifique (CNRS), Laboratoire de Biologie et de Pharmacologie Appliquée (LBPA), École normale supérieure - Cachan (ENS Cachan)-Centre National de la Recherche Scientifique (CNRS), Institut de génétique et microbiologie [Orsay] (IGM), Université Paris-Sud - Paris 11 (UP11)-Centre National de la Recherche Scientifique (CNRS), and Institut de biochimie et biophysique moléculaire et cellulaire (IBBMC)
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Models, Molecular ,MESH: Complement C1q ,Fatal outcome ,Protein Conformation ,MESH: Membrane Glycoproteins ,MESH: Protein Structure, Secondary ,Crystallography, X-Ray ,Biochemistry ,Protein Structure, Secondary ,MESH: Circular Dichroism ,MESH: Dose-Response Relationship, Drug ,MESH: Recombinant Proteins ,MESH: Protein Structure, Tertiary ,MESH: Protein Conformation ,MESH: Animals ,0303 health sciences ,Membrane Glycoproteins ,biology ,Circular Dichroism ,Temperature ,MESH: Surface-Active Agents ,Recombinant Proteins ,MESH: Temperature ,MESH: Bacillus anthracis ,3. Good health ,Bacillus anthracis ,Bacillus anthracis spore ,Surface protein ,MESH: Models, Molecular ,Protein Binding ,Surface Properties ,Ultraviolet Rays ,chemical and pharmacologic phenomena ,[SDV.BC]Life Sciences [q-bio]/Cellular Biology ,Microbiology ,Surface-Active Agents ,03 medical and health sciences ,[SDV.BBM] Life Sciences [q-bio]/Biochemistry, Molecular Biology ,Animals ,Humans ,MESH: Protein Binding ,[SDV.BBM]Life Sciences [q-bio]/Biochemistry, Molecular Biology ,Molecular Biology ,030304 developmental biology ,MESH: Surface Properties ,MESH: Humans ,Dose-Response Relationship, Drug ,Tumor Necrosis Factor-alpha ,030306 microbiology ,Complement C1q ,fungi ,Cell Biology ,MESH: Crystallography, X-Ray ,biology.organism_classification ,Protein Structure, Tertiary ,Spore ,Sequence homology ,MESH: Tumor Necrosis Factor-alpha ,MESH: Ultraviolet Rays ,Bacteria ,C1q receptors - Abstract
International audience; The lethal disease anthrax is propagated by spores of Bacillus anthracis, which can penetrate into the mammalian host by inhalation, causing a rapid progression of the disease and a mostly fatal outcome. We have solved the three-dimensional structure of the major surface protein BclA on B. anthracis spores. Surprisingly, the structure resembles C1q, the first component of complement, despite there being no sequence homology. Although most assays for C1q-like activity, including binding to C1q receptors, suggest that BclA does not mimic C1q, we show that BclA, as well as C1q, interacts with components of the lung alveolar surfactant layer. Thus, to better recognize and invade its hosts, this pathogenic soil bacterium may have evolved a surface protein whose structure is strikingly close to a mammalian protein.The lethal disease anthrax is propagated by spores of Bacillus anthracis, which can penetrate into the mammalian host by inhalation, causing a rapid progression of the disease and a mostly fatal outcome. We have solved the three-dimensional structure of the major surface protein BclA on B. anthracis spores. Surprisingly, the structure resembles C1q, the first component of complement, despite there being no sequence homology. Although most assays for C1q-like activity, including binding to C1q receptors, suggest that BclA does not mimic C1q, we show that BclA, as well as C1q, interacts with components of the lung alveolar surfactant layer. Thus, to better recognize and invade its hosts, this pathogenic soil bacterium may have evolved a surface protein whose structure is strikingly close to a mammalian protein.
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- 2005
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165. Low resolution structure determination shows procollagen C-proteinase enhancer to be an elongated multidomain glycoprotein
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Christine Ebel, Denise Eichenberger, Gilbert Deléage, Sylvie Ricard-Blum, Maxim V. Petoukhov, Christophe Geourjon, Dmitri I. Svergun, Barry M. Steiglitz, Simonetta Bernocco, Florence Ruggiero, David J.S. Hulmes, Daniel S. Greenspan, Bernard Font, Institut de biologie et chimie des protéines [Lyon] (IBCP), Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Centre National de la Recherche Scientifique (CNRS), Institut de biologie structurale (IBS - UMR 5075 ), Université Grenoble Alpes [2016-2019] (UGA [2016-2019])-Institut de Recherche Interdisciplinaire de Grenoble (IRIG), Direction de Recherche Fondamentale (CEA) (DRF (CEA)), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Direction de Recherche Fondamentale (CEA) (DRF (CEA)), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Centre National de la Recherche Scientifique (CNRS), Centre National de la Recherche Scientifique (CNRS)-Université Grenoble Alpes [2016-2019] (UGA [2016-2019])-Institut de Recherche Interdisciplinaire de Grenoble (IRIG), and Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)
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MESH: Extracellular Matrix Proteins ,Models, Molecular ,MESH: Sequence Homology, Amino Acid ,Protein Conformation ,MESH: Amino Acid Sequence ,Matrix metalloproteinase ,Biochemistry ,Mass Spectrometry ,law.invention ,MESH: Recombinant Proteins ,MESH: Protein Structure, Tertiary ,MESH: Protein Conformation ,law ,Scattering, Radiation ,chemistry.chemical_classification ,0303 health sciences ,Extracellular Matrix Proteins ,Chemistry ,030302 biochemistry & molecular biology ,Recombinant Proteins ,Recombinant DNA ,medicine.symptom ,MESH: Models, Molecular ,Stereochemistry ,Molecular Sequence Data ,MESH: Glycoproteins ,MESH: Microscopy, Electron ,Cell Line ,03 medical and health sciences ,MESH: X-Rays ,medicine ,Humans ,[SDV.BBM]Life Sciences [q-bio]/Biochemistry, Molecular Biology ,Homology modeling ,Amino Acid Sequence ,MESH: Scattering, Radiation ,Enhancer ,Molecular Biology ,030304 developmental biology ,Glycoproteins ,MESH: Mass Spectrometry ,MESH: Humans ,MESH: Molecular Sequence Data ,Sequence Homology, Amino Acid ,X-Rays ,MESH: Ultracentrifugation ,Cell Biology ,MESH: Cell Line ,Protein Structure, Tertiary ,Procollagen peptidase ,Microscopy, Electron ,Mechanism of action ,Biophysics ,Glycoprotein ,Ultracentrifugation ,Function (biology) - Abstract
International audience; Procollagen C-proteinase enhancer (PCPE) is an extracellular matrix glycoprotein that can stimulate the action of tolloid metalloproteinases, such as bone morphogenetic protein-1, on a procollagen substrate, by up to 20-fold. The PCPE molecule consists of two CUB domains followed by a C-terminal NTR (netrin-like) domain. In order to obtain structural insights into the function of PCPE, the recombinant protein was characterized by a range of biophysical techniques, including analytical ultracentrifugation, transmission electron microscopy, and small angle x-ray scattering. All three approaches showed PCPE to be a rod-like molecule, with a length of approximately 150 A. Homology modeling of both CUB domains and the NTR domain was consistent with the low-resolution structure of PCPE deduced from the small angle x-ray scattering data. Comparison with the low-resolution structure of the procollagen C-terminal region supports a recently proposed model (Ricard-Blum, S., Bernocco, S., Font, B., Moali, C., Eichenberger, D., Farjanel, J., Burchardt, E. R., van der Rest, M., Kessler, E., and Hulmes, D. J. S. (2002) J. Biol. Chem. 277, 33864-33869) for the mechanism of action of PCPE.
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- 2002
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166. Interaction properties of the procollagen C-proteinase enhancer protein shed light on the mechanism of stimulation of BMP-1
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Catherine Moali, Elmar R. Burchardt, Efrat Kessler, David J.S. Hulmes, Michel van der Rest, Sylvie Ricard-Blum, Simonetta Bernocco, Bernard Font, Denise Eichenberger, Jean Farjanel, and Deleage, Gilbert
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chemistry.chemical_classification ,Extracellular Matrix Proteins ,Binding Sites ,integumentary system ,Metalloendopeptidases ,Cell Biology ,Cleavage (embryo) ,Biochemistry ,Bone morphogenetic protein 1 ,Bone Morphogenetic Protein 1 ,Dissociation constant ,Procollagen peptidase ,chemistry ,Bone Morphogenetic Proteins ,[SDV.BBM] Life Sciences [q-bio]/Biochemistry, Molecular Biology ,Humans ,Calcium ,Binding site ,Glycoprotein ,Protein precursor ,Enhancer ,Molecular Biology ,Procollagen ,Glycoproteins - Abstract
Procollagen C-proteinase enhancer (PCPE) is an extracellular matrix glycoprotein that binds to the C-propeptide of procollagen I and can enhance the activities of procollagen C-proteinases up to 20-fold. To determine the molecular mechanism of PCPE activity, the interactions of the recombinant protein with the procollagen molecule as well as with its isolated C-propeptide domain were studied using surface plasmon resonance (BIAcore) technology. Binding required the presence of divalent metal cations such as calcium and manganese. By ligand blotting, calcium was found to bind to the C-propeptide domains of procollagens I and III but not to PCPE. By chemical cross-linking, the stoichiometry of the PCPE/C-propeptide interaction was found to be 1:1 in accordance with enzyme kinetic data. The use of a monoclonal antibody directed against the N-terminal region of the C-propeptide suggested that this region is probably not involved in binding to PCPE. Association and dissociation kinetics of the C-propeptide domains of procollagens I and III on immobilized PCPE were rapid. Extrapolation to saturation equilibrium yielded apparent equilibrium dissociation constants in the range 150-400 nM. In contrast, the association/dissociation kinetics of intact procollagen molecules on immobilized PCPE were relatively slow, corresponding to a dissociation constant of 1 nM. Finally, pN-collagen (i.e. procollagen devoid of the C-terminal propeptide domain) was also found to bind to immobilized PCPE, suggesting that PCPE binds to sites on either side of the procollagen cleavage site, thereby facilitating the action of procollagen C-proteinases.Procollagen C-proteinase enhancer (PCPE) is an extracellular matrix glycoprotein that binds to the C-propeptide of procollagen I and can enhance the activities of procollagen C-proteinases up to 20-fold. To determine the molecular mechanism of PCPE activity, the interactions of the recombinant protein with the procollagen molecule as well as with its isolated C-propeptide domain were studied using surface plasmon resonance (BIAcore) technology. Binding required the presence of divalent metal cations such as calcium and manganese. By ligand blotting, calcium was found to bind to the C-propeptide domains of procollagens I and III but not to PCPE. By chemical cross-linking, the stoichiometry of the PCPE/C-propeptide interaction was found to be 1:1 in accordance with enzyme kinetic data. The use of a monoclonal antibody directed against the N-terminal region of the C-propeptide suggested that this region is probably not involved in binding to PCPE. Association and dissociation kinetics of the C-propeptide domains of procollagens I and III on immobilized PCPE were rapid. Extrapolation to saturation equilibrium yielded apparent equilibrium dissociation constants in the range 150-400 nM. In contrast, the association/dissociation kinetics of intact procollagen molecules on immobilized PCPE were relatively slow, corresponding to a dissociation constant of 1 nM. Finally, pN-collagen (i.e. procollagen devoid of the C-terminal propeptide domain) was also found to bind to immobilized PCPE, suggesting that PCPE binds to sites on either side of the procollagen cleavage site, thereby facilitating the action of procollagen C-proteinases.
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- 2002
167. Fibrillar Collagen Trimerization: Structural Basis and Related Genetic Disorders
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David J.S. Hulmes, Natacha Mariano, Urvashi Sharma, and Nushin Aghajari
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Inorganic Chemistry ,Structural Biology ,Chemistry ,Fibrillar collagen ,Biophysics ,General Materials Science ,Physical and Theoretical Chemistry ,Condensed Matter Physics ,Biochemistry - Abstract
The C-propeptides of fibrillar procollagens play crucial roles in tissue homeostasis and remodeling by controlling both the intracellular assembly of procollagen molecules and the extracellular assembly of collagen fibrils. Mutations in the C-propeptides affecting molecular assembly are associated with several, often lethal, genetic disorders affecting bone, cartilage, blood vessels and skin. Cells often produce multiple collagen types, each with the correct chain composition. In fibrillar collagens, molecular assembly begins with the C-propeptides which contain chain recognition sequences specific for each collagen type. Our recent crystal structure of a C-propeptide trimer from procollagen III (Bourhis et al, 2012), revealed specific interactions at the trimer interface. Unlike collagen III, a homotrimer, collagen I is normally a heterotrimer, though small amounts of homotrimer are found in embryonic tissue and cancer. To investigate the molecular basis of homo- versus hetero-trimer formation, further structural information is required. We have initiated structural studies on homo- and hetero-trimers of the C-propeptide domain of human procollagen I, to study the molecular basis of chain selectivity within the same cells. CPI homotrimer crystallizes in the monoclinic spacegroup P21, and data were collected to 2.2 Å resolution. The crystal structure solved by MR shows a structure resembling CPIII with the overall shape of a flower. At the trimerization interface however, interactions between chains are specific to CPI and these give insights into the mechanism of molecular recognition. These interactions will be compared to those in CPIII. Structural mapping indicates striking correlations between the sites of numerous disease-related mutations in different C-propeptide domains and the degree of phenotype severity. The results have broad implications for the understanding of genetic disorders of connective tissues and also for new therapeutic approaches against fibrosis.
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- 2014
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168. Biophysical characterization of the C-propeptide trimer from human procollagen III reveals a tri-lobed structure
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Jean Farjanel, Christine Ebel, Denise Eichenberger, Marlène Mazzorana, Simonetta Bernocco, Stéphanie Finet, David J.S. Hulmes, and Deleage, Gilbert
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Models, Molecular ,Stereochemistry ,Trimer ,Biochemistry ,Culture Media, Serum-Free ,Cell Line ,Extracellular matrix ,Cell surface receptor ,[SDV.BBM] Life Sciences [q-bio]/Biochemistry, Molecular Biology ,Extracellular ,Humans ,Scattering, Radiation ,Protein Structure, Quaternary ,Molecular Biology ,Chemistry ,Chemotaxis ,Cell Biology ,Recombinant Proteins ,Solutions ,Procollagen peptidase ,Collagen Type III ,Cruciform ,Biophysics ,Ultracentrifugation ,Intracellular ,Procollagen - Abstract
Procollagen C-propeptide domains direct chain association during intracellular assembly of procollagen molecules. In addition, they control collagen solubility during extracellular proteolytic processing and fibril formation and interact with cell surface receptors and extracellular matrix components involved in feedback inhibition, mineralization, cell growth arrest, and chemotaxis. At present, three-dimensional structural information for the C-propeptides, which would help to understand the underlying molecular mechanisms, is lacking. Here we have carried out a biophysical study of the recombinant C-propeptide trimer from human procollagen III using laser light scattering, analytical ultracentrifugation, and small angle x-ray scattering. The results show that the trimer is an elongated molecule, which by modeling of the x-ray scattering data appears to be cruciform in shape with three large lobes and one minor lobe. We speculate that each of the major lobes corresponds to one of the three component polypeptide chains, which come together in a junction region to connect to the rest of the procollagen molecule.Procollagen C-propeptide domains direct chain association during intracellular assembly of procollagen molecules. In addition, they control collagen solubility during extracellular proteolytic processing and fibril formation and interact with cell surface receptors and extracellular matrix components involved in feedback inhibition, mineralization, cell growth arrest, and chemotaxis. At present, three-dimensional structural information for the C-propeptides, which would help to understand the underlying molecular mechanisms, is lacking. Here we have carried out a biophysical study of the recombinant C-propeptide trimer from human procollagen III using laser light scattering, analytical ultracentrifugation, and small angle x-ray scattering. The results show that the trimer is an elongated molecule, which by modeling of the x-ray scattering data appears to be cruciform in shape with three large lobes and one minor lobe. We speculate that each of the major lobes corresponds to one of the three component polypeptide chains, which come together in a junction region to connect to the rest of the procollagen molecule.
- Published
- 2001
169. Unhydroxylated triple helical collagen I produced in transgenic plants provides new clues on the role of hydroxyproline in collagen folding and fibril formation
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Manfred Theisen, Christine Merle, David J.S. Hulmes, Robert Garrone, Simonetta Bernocco, Patricia Berland, Florence Ruggiero, and Stephanie Perret
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chemistry.chemical_classification ,Protein Folding ,Protein Conformation ,Collagen helix ,Cell Biology ,Fibril ,Plants, Genetically Modified ,Biochemistry ,Collagen Type I ,Amino acid ,Hydroxylation ,Hydroxyproline ,chemistry.chemical_compound ,Protein structure ,chemistry ,Ionic strength ,Animals ,Protein folding ,Cattle ,Electrophoresis, Polyacrylamide Gel ,Molecular Biology - Abstract
Human unhydroxylated homotrimeric triple-helical collagen I produced in transgenic plants was used as an experimental model to provide insights into the role of hydroxyproline in molecular folding and fibril formation. By using chemically cross-linked molecules, we show here that the absence of hydroxyproline residues does not prevent correct folding of the recombinant collagen although it markedly slows down the propagation rate compared with bovine fully hydroxylated homotrimeric collagen I. Relatively slow cis-trans-isomerization in the absence of hydroxyproline likely represents the rate-limiting factor in the propagation of the unhydroxylated collagen helix. Because of the lack of hydroxylation, recombinant collagen molecules showed increased flexibility as well as a reduced melting temperature compared with native homotrimers and heterotrimers, whereas the distribution of charged amino acids was unchanged. However, unlike with bovine collagen I, the recombinant collagen did not self-assemble into banded fibrils in physiological ionic strength buffer at 20 degrees C. Striated fibrils were only obtained with low ionic strength buffer. We propose that, under physiological ionic strength conditions, the hydroxyl groups in the native molecule retain water more efficiently thus favoring correct fibril formation. The importance of hydroxyproline in collagen self-assembly suggested by others from the crystal structures of collagen model peptides is thus confirmed experimentally on the entire collagen molecule.
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- 2001
170. How to grow trees on the wastes of a boreal gold mine: identification of the main physico-chemical limitations.
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Larcheveque M., Mine closure 2012, proceedings of the seventh international conference on mine closure Brisbane, Australia 25-Sep-1227-Sep-12, Baribeau C., Bussiere B., Cartier H., David J.S., Desrochers A., Pednault C., Larcheveque M., Mine closure 2012, proceedings of the seventh international conference on mine closure Brisbane, Australia 25-Sep-1227-Sep-12, Baribeau C., Bussiere B., Cartier H., David J.S., Desrochers A., and Pednault C.
- Abstract
The Osisko open-pit Au mine in Quebec, Canada, produces low-grade ore at 55 000 t/day and the non-acid generating wastes will eventually cover large surfaces that will need to be reclaimed. Milling wastes will be deposited as thickened tailings to minimise water consumption. Two studies were carried out, the first involving the establishment of plantations on compacted waste rock covered with overburden topsoil or subsoil at two compaction intensities and the second in a glass house to evaluate the capacity of the thickened tailings to sustain the growth of tamarack, jack pine, black spruce, basket willow, hybrid poplars and green alder. Tailings alone or mixed with amendments including overburden soils, vermicomposts from food wastes, chicken manure and peat were tested, and the use of a thin or thick layer of overburden topsoil was also investigated. The results showed that direct planting in the thickened tailings was not suitable for boreal trees, probably due to the high water retention capacity and low macroporosity of the substrate which limited O2 availability required for root respiration. An organic matter-rich amendment increased the macroporosity to levels suitable for tree growth, with peat being the most effective amendment. Composts produced appropriate porosity levels but also increased electrical conductivity to levels which limited broad-leaved species survival and conifer biomass production. No trace metal contamination of the trees occurred in the mixtures, and the presence of underlying alkaline tailings limited Mn, Zn and Al phytotoxicity of the acidic overburden topsoil layer from occurring in tree leaves. Growth was improved with a thin layer compared with a thick layer of overburden soil, although the trees showed Cu accumulation in the fine roots., The Osisko open-pit Au mine in Quebec, Canada, produces low-grade ore at 55 000 t/day and the non-acid generating wastes will eventually cover large surfaces that will need to be reclaimed. Milling wastes will be deposited as thickened tailings to minimise water consumption. Two studies were carried out, the first involving the establishment of plantations on compacted waste rock covered with overburden topsoil or subsoil at two compaction intensities and the second in a glass house to evaluate the capacity of the thickened tailings to sustain the growth of tamarack, jack pine, black spruce, basket willow, hybrid poplars and green alder. Tailings alone or mixed with amendments including overburden soils, vermicomposts from food wastes, chicken manure and peat were tested, and the use of a thin or thick layer of overburden topsoil was also investigated. The results showed that direct planting in the thickened tailings was not suitable for boreal trees, probably due to the high water retention capacity and low macroporosity of the substrate which limited O2 availability required for root respiration. An organic matter-rich amendment increased the macroporosity to levels suitable for tree growth, with peat being the most effective amendment. Composts produced appropriate porosity levels but also increased electrical conductivity to levels which limited broad-leaved species survival and conifer biomass production. No trace metal contamination of the trees occurred in the mixtures, and the presence of underlying alkaline tailings limited Mn, Zn and Al phytotoxicity of the acidic overburden topsoil layer from occurring in tree leaves. Growth was improved with a thin layer compared with a thick layer of overburden soil, although the trees showed Cu accumulation in the fine roots.
- Published
- 2012
171. Collagen XI nucleates self-assembly and limits lateral growth of cartilage fibrils
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Hans-Joachim Galla, Eric F. Eikenberry, Ulrich Blaschke, David J.S. Hulmes, Peter Bruckner, and Deleage, Gilbert
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Cartilage, Articular ,Sternum ,Growth control ,Chick Embryo ,Fibril ,Biochemistry ,Fibril formation ,Polymer chemistry ,medicine ,[SDV.BBM] Life Sciences [q-bio]/Biochemistry, Molecular Biology ,Embryonic cartilage ,Animals ,Molecular Biology ,Cells, Cultured ,Diameter control ,Collagen ii ,Chemistry ,Cartilage ,Cell Biology ,Models, Structural ,Kinetics ,Microscopy, Electron ,medicine.anatomical_structure ,Microfibrils ,Biophysics ,Self-assembly ,Collagen - Abstract
Fibrils of embryonic cartilage are heterotypic alloys formed by collagens II, IX, and XI and have a uniform diameter of approximately 20 nm. The molecular basis of this lateral growth control is poorly understood. Collagen II subjected to fibril formation in vitro produced short and tapered tactoids with strong D-periodic banding. The maximal width of these tactoids varied over a broad range. By contrast, authentic mixtures of collagens II, IX, and XI yielded long and weakly banded fibrils, which, strikingly, had a uniform width of about 20 nm. The same was true for mixtures of collagens II and XI lacking collagen IX as long as the molar excess of collagen II was less than 8-fold. At higher ratios, the proteins assembled into tactoids coexisting with cartilage-like fibrils. Therefore, diameter control is an inherent property of appropriate mixtures of collagens II and XI. Collagen IX is not essential for this feature but strongly increases the efficiency of fibril formation. Therefore, this protein may be an important stabilizing factor of cartilage fibrils.Fibrils of embryonic cartilage are heterotypic alloys formed by collagens II, IX, and XI and have a uniform diameter of approximately 20 nm. The molecular basis of this lateral growth control is poorly understood. Collagen II subjected to fibril formation in vitro produced short and tapered tactoids with strong D-periodic banding. The maximal width of these tactoids varied over a broad range. By contrast, authentic mixtures of collagens II, IX, and XI yielded long and weakly banded fibrils, which, strikingly, had a uniform width of about 20 nm. The same was true for mixtures of collagens II and XI lacking collagen IX as long as the molar excess of collagen II was less than 8-fold. At higher ratios, the proteins assembled into tactoids coexisting with cartilage-like fibrils. Therefore, diameter control is an inherent property of appropriate mixtures of collagens II and XI. Collagen IX is not essential for this feature but strongly increases the efficiency of fibril formation. Therefore, this protein may be an important stabilizing factor of cartilage fibrils.
- Published
- 2000
172. Locations of marine animals revealed by carbon isotopes
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MacKenzie, Kirsteen M., Palmer, Martin R., Moore, Andy, Ibbotson, Anton T., Beaumont, William R.C., Poulter, David J.S., Trueman, Clive N., MacKenzie, Kirsteen M., Palmer, Martin R., Moore, Andy, Ibbotson, Anton T., Beaumont, William R.C., Poulter, David J.S., and Trueman, Clive N.
- Abstract
Knowing the distribution of marine animals is central to understanding climatic and other environmental influences on population ecology. This information has proven difficult to gain through capture-based methods biased by capture location. Here we show that marine location can be inferred from animal tissues. As the carbon isotope composition of animal tissues varies with sea surface temperature, marine location can be identified by matching time series of carbon isotopes measured in tissues to sea surface temperature records. Applying this technique to populations of Atlantic salmon (Salmo salar L.) produces isotopically-derived maps of oceanic feeding grounds, consistent with the current understanding of salmon migrations, that additionally reveal geographic segregation in feeding grounds between individual philopatric populations and age-classes. Carbon isotope ratios can be used to identify the location of open ocean feeding grounds for any pelagic animals for which tissue archives and matching records of sea surface temperature are available.
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- 2011
173. Articular cartilage proteoglycan metabolism in avian degenerative joint disease: effects of strain selection and body weight
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David J.S. Hulmes, B.H. Thorp, N. Venkatesan, and Deleage, Gilbert
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Cartilage, Articular ,medicine.medical_specialty ,Fowl ,Tibiotarsus ,Tarsometatarsus ,Strain (injury) ,Biochemistry ,Glycosaminoglycan ,Rheumatology ,Internal medicine ,Osteoarthritis ,medicine ,[SDV.BBM] Life Sciences [q-bio]/Biochemistry, Molecular Biology ,Animals ,Orthopedics and Sports Medicine ,Molecular Biology ,Cells, Cultured ,Electrophoresis, Agar Gel ,biology ,Chemistry ,Cartilage ,Body Weight ,Broiler ,food and beverages ,Cell Biology ,biology.organism_classification ,medicine.disease ,carbohydrates (lipids) ,Endocrinology ,medicine.anatomical_structure ,Proteoglycan metabolism ,Electrophoresis, Polyacrylamide Gel ,Proteoglycans ,Chickens - Abstract
The effects of strain selection and body weight on proteoglycan metabolism and the onset of degenerative joint disease (DJD) were investigated in avian articular cartilage. Samples from the hock joint (proximal tarsometatarsus, PTM; distal tibiotarsus, DTT) of rapidly growing broiler fowl, fed either ad libitum or on a restricted-diet, were compared with those from a slow growing, light and non-selected strain (J-line). Synthesis and degradation of proteoglycans were investigated by radioactive pulse-chase studies, determination of total sulphated glycosaminoglycans and electrophoretic analysis. By gross morphology, degenerative changes in articular cartilage occurred solely in the DTT from ad libitum-fed broiler fowl, after 13 weeks. Differences in proteoglycan metabolism were also observed, most markedly in the DTT, where the rate of proteoglycan synthesis in the ad libitum-fed group was less than in age-matched J-line cartilage, and the proportions of both newly synthesised and resident proteoglycans released into the culture medium were greater. Results with the feed-restricted group were intermediate between ad libitum-fed and J-line. Electrophoretic analysis of proteoglycans in the culture media showed evidence of degradation solely in the ad libitum-fed group, with earliest onset in the DTT. The results indicate that proteoglycan metabolism in avian articular cartilage is similar to that in mammalian cartilage during the development of DJD, and that the onset of cartilage degeneration is linked with excessive load bearing.The effects of strain selection and body weight on proteoglycan metabolism and the onset of degenerative joint disease (DJD) were investigated in avian articular cartilage. Samples from the hock joint (proximal tarsometatarsus, PTM; distal tibiotarsus, DTT) of rapidly growing broiler fowl, fed either ad libitum or on a restricted-diet, were compared with those from a slow growing, light and non-selected strain (J-line). Synthesis and degradation of proteoglycans were investigated by radioactive pulse-chase studies, determination of total sulphated glycosaminoglycans and electrophoretic analysis. By gross morphology, degenerative changes in articular cartilage occurred solely in the DTT from ad libitum-fed broiler fowl, after 13 weeks. Differences in proteoglycan metabolism were also observed, most markedly in the DTT, where the rate of proteoglycan synthesis in the ad libitum-fed group was less than in age-matched J-line cartilage, and the proportions of both newly synthesised and resident proteoglycans released into the culture medium were greater. Results with the feed-restricted group were intermediate between ad libitum-fed and J-line. Electrophoretic analysis of proteoglycans in the culture media showed evidence of degradation solely in the ad libitum-fed group, with earliest onset in the DTT. The results indicate that proteoglycan metabolism in avian articular cartilage is similar to that in mammalian cartilage during the development of DJD, and that the onset of cartilage degeneration is linked with excessive load bearing.
- Published
- 1999
174. Role of ciliates and other microzooplankton in the Irminger Sea (NW Atlantic Ocean)
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Montagnes, David J.S., Allen, John T., Brown, Louise, Bulit, Celia, Davidson, Russell, Fielding, Sophie, Heath, Mike, Holliday, N. Penny, Rasmussen, Jens, Sanders, Richard, Waniek, Joanna, Wilson, David I., Montagnes, David J.S., Allen, John T., Brown, Louise, Bulit, Celia, Davidson, Russell, Fielding, Sophie, Heath, Mike, Holliday, N. Penny, Rasmussen, Jens, Sanders, Richard, Waniek, Joanna, and Wilson, David I.
- Abstract
This study focuses on a large region of the open ocean where we predict microzooplankton significantly influence foodweb structure over much of the year. The Irminger Sea exhibits low primary production that is generally poor for copepod production; in such waters ciliates and other microzooplankton can contribute significantly to the diets of holo- and mero- mesozooplankton and are major grazers of primary production. Surface plankton samples were collected during an extensive survey, across the basin and along one transect at several depths, over three seasons (winter, spring, summer), but not including the spring bloom. Microzooplankton and phytoplankton samples were fixed with Lugol’s solution and microscopically enumerated for species abundance; biomass was determined from cell volumes. Basin-scale distributions of abundance, biomass, and production were examined by geostatistical and multidimensional scaling methods. The dominance of the < 10 µm phytoplankton suggests that this should be a microzooplankton-dominated food web. Ciliates and heterotrophic dinoflagellates are abundant, in terms of numbers and biomass; heterotrophic dinoflagellates are more abundant than ciliates, but are less dominant in terms of biomass. Using ciliates as a proxy for all microzooplankton we suggest that there are seasonal patterns in occurrence, and there is no basin-scale patchiness related to hydrographic features. Through some simple, albeit “rough” calculations, we suggest that ciliate production may be sufficient to account for the removal of 15-30% of the < 10 µm primary production. If heterotrophic dinoflagellates were included in these estimates, they may be doubled (i.e. 30-60%). We, thus, contend that microzooplankton are major phytoplankton consumers in the system and should be carefully parameterised in models of this region.
- Published
- 2010
175. Factors controlling the abundance and size distribution of the phototrophic ciliate Myrionecta rubra in open waters of the North Atlantic
- Author
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Montagnes, David J.S., Allen, John T., Brown, Louise, Bulit, Celia, Davidson, Russell, Diaz-Avalos, Carlos, Fielding, Sophie, Heath, Mike, Holliday, Naomi P., Rasmussen, Jens, Sanders, Richard, Waniek, Joanna J., Wilson, David, Montagnes, David J.S., Allen, John T., Brown, Louise, Bulit, Celia, Davidson, Russell, Diaz-Avalos, Carlos, Fielding, Sophie, Heath, Mike, Holliday, Naomi P., Rasmussen, Jens, Sanders, Richard, Waniek, Joanna J., and Wilson, David
- Abstract
Myrionecta rubra, a ubiquitous planktonic ciliate, has received much attention due to its wide distribution, occurrence as a red tide organism, and unusual cryptophyte endosymbiont. Although well studied in coastal waters, M. rubra is poorly examined in the open ocean. In the Irminger Basin, North Atlantic, the abundance of M. rubra was 0–5 cells/ml, which is low compared with that found in coastal areas. Distinct patchiness (100 km) was revealed by geostatistical analysis. Multiple regression indicated there was little relationship between M. rubra abundance and a number of environmental factors, with the exception of temperature and phytoplankton biomass, which influenced abundance in the spring. We also improve on studies that indicate distinct size classes of M. rubra; we statistically recognise four significantly distinct width classes (5–16, 12–23, 18–27, 21–33 μm), which decrease in abundance with increasing size. A multinomial logistic regression revealed the main variable correlated with this size distribution was ambient nitrate concentration. Finally, we propose a hypothesis for the distribution of sizes, involving nutrients, feeding, and dividing of the endosymbiont.
- Published
- 2008
176. Structural requirements for fibromodulin binding to collagen and the control of type I collagen fibrillogenesis--critical roles for disulphide bonding and the C-terminal region
- Author
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Marguerite-Marie Boutillon, David J.S. Hulmes, Denise Eichenberger, Bernard Font, and D. Goldschmidt
- Subjects
Decorin ,Lumican ,Protein Conformation ,Biochemistry ,Animals ,Amino Acid Sequence ,Disulfides ,Extracellular Matrix Proteins ,biology ,Chemistry ,Biglycan ,Circular Dichroism ,Hydrolysis ,Fibrillogenesis ,Cell biology ,carbohydrates (lipids) ,Collagen, type I, alpha 1 ,Microscopy, Electron ,Proteoglycan ,biology.protein ,Cattle ,Proteoglycans ,Spectrophotometry, Ultraviolet ,Collagen ,Carrier Proteins ,Type I collagen ,Fibromodulin ,Binding domain ,Protein Binding - Abstract
Fibromodulin belongs to the family of small, leucine-rich proteoglycans which have been reported tointeract with collagens and to inhibit type I collagen fibrillogenesis. Decorin and fibromodulin exhibit anoticeable degree of sequence similarity. However, as previously reported [Font, B., Eichenberger, D.,Rosenberg, L. M. & van der Rest, M. (1996) Matrix Biol. 15,3412348] the domains of these moleculesimplicated in the interactions with type XII and type XIV collagens are different, these being the dermatansulphate/chondroitin sulphate chain for decorin and the core protein for fibromodulin. At the present timethe fibromodulin domains implicated in the interactions with fibrillar collagens remain unknown. Inexperiments reported here, we have sought to identify the structural requirements for fibromodulin in-teraction with collagen and for the control of type I collagen fibrillogenesis. Circular dichroism spectraand fibrillogenesis inhibition studies show that fibromodulin structure and its collagen fibrillogenesiscontrol function are strictly dependent on the presence of intact disulphide bridge(s). In addition, weshow that the binding of fibromodulin (or fibromodulin-derived fragments) to type I collagen is notnecessarily correlated with fibrillogenesis inhibition. To isolate fibromodulin domains, the native proteog-lycan was submitted to mild proteolysis. We have isolated an A-chymotrypsin2resistant fragment whichcontains the bulk of the N-terminal and central region of the molecule including the leucine-rich repeats4 and 6 reported for decorin to be involved in type I collagen binding. This fragment does not bind totype I collagen. Using enzymes with different specificities, a number of large fragments of fibromodulinwere obtained, suggesting a compact structure for this molecule which is relatively resistant to proteolysis.None of these N-glycosylated fragments were able to bind to type I collagen in co-sedimentation experi-ments. Taken together these results suggest that fibromodulin-type I collagen interactions leading tofibrillogenesis inhibition require more than one binding domain. One of these domains could be the C-terminal end of the molecule containing the disulphide loop which is absent in the chymotrypsin-resistantfragment.Keywords: collagen fibrillogenesis; fibromodulin; proteoglycan domain.In connective tissues, proteoglycans play important roles due cysteine residues, with at least one disulphide bridge, (b) ato their interactions with other components of the extracellular central region with a variable number (10212) of asparagine-matrix [1]. Among proteoglycans, several members of this group containing leucine-rich repeats containing N-linked keratan sul-are structurally related and constitute the small proteoglycan phate (fibromodulin and lumican) or N-linked oligosaccharidesfamily, namely biglycan, decorin, fibromodulin and lumican [2]. (biglycan and decorin) distributed among up to five potentialThese molecules are characterised by a core protein of about sites; and (c) a C-terminal region with a conserved disulphide40 kDa, and by the existence of three distinct regions: (a) a neg- loop.In vivo, small proteoglycans have been shown to associateatively charged N-terminal region with either covalently linked with fibrillar collagens [3]. In recent experiments, it has beendermatan sulphate/chondroitin sulphate (DS/CS) chains (usually reported that targeted disruption of the decorin gene in miceone in decorin and two in biglycan), or tyrosine sulphate in fi- leads to skin with markedly reduced tensile strength and to ab-bromodulin and lumican, and a highly conserved cluster of four normal morphology of collagen fibrils, indicating that in vivodecorin plays a major role in the regulation of fibril formation
- Published
- 1998
177. Carbon sink strength of a Mediterranean cork oak understorey: how do semi‐deciduous and evergreen shrubs face summer drought?
- Author
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Correia, A.C., primary, Costa e Silva, F., additional, Correia, A.V., additional, Hussain, M.Z., additional, Rodrigues, A.D., additional, David, J.S., additional, and Pereira, J.S., additional
- Published
- 2013
- Full Text
- View/download PDF
178. MAPPING THE WATER PATHWAYS IN STEM XYLEM BY SAP FLOW MEASUREMENTS DURING BRANCH SEVERING EXPERIMENTS
- Author
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Nadezhdina, N., primary, David, T.S., additional, David, J.S., additional, Nadezhdin, V., additional, and Pinto, C.A., additional
- Published
- 2013
- Full Text
- View/download PDF
179. The CUB domains of procollagen C-proteinase enhancer control collagen assembly solely by their effect on procollagen C-proteinase/bone morphogenetic protein-1
- Author
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David J.S. Hulmes, Efrat Kessler, A P Mould, and Deleage, Gilbert
- Subjects
PROCOLLAGEN C-PROTEINASE ,chemistry.chemical_classification ,Extracellular Matrix Proteins ,Chemistry ,Metalloendopeptidases ,Chick Embryo ,macromolecular substances ,Molecular biology ,Bone morphogenetic protein 1 ,In vitro ,Bone Morphogenetic Protein 1 ,Protein Structure, Tertiary ,Extracellular matrix ,Molecular Weight ,Procollagen peptidase ,Mice ,Protein structure ,Bone Morphogenetic Proteins ,[SDV.BBM] Life Sciences [q-bio]/Biochemistry, Molecular Biology ,Animals ,Collagen ,Enhancer ,Glycoprotein ,Molecular Biology ,Glycoproteins - Abstract
Procollagen C-proteinase enhancer (PCPE) is a 55 kDa glycoprotein that increases the activity of procollagen C-proteinase (PCP)/bone morphogenetic protein-1 (BMP-1) during C-terminal processing of fibrillar collagen precursors. Here we show that the 36 kDa, active fragment of PCPE enhances the activity of both the short (mouse) and long (chick) forms of PCP/BMP-1. The activity of PCPE is not associated with the formation of sedimentable procollagen aggregates. In addition, PCPE (36 kDa) has no effect in vitro on N-terminal procollagen processing by highly purified procollagen N-proteinase. Finally, when the amount of PCP is adjusted so that the rate of C-terminal processing remains constant, PCPE (36 kDa) has no effect on the assembly of collagen or pN-collagen in vitro following C-terminal processing of the corresponding precursors.Procollagen C-proteinase enhancer (PCPE) is a 55 kDa glycoprotein that increases the activity of procollagen C-proteinase (PCP)/bone morphogenetic protein-1 (BMP-1) during C-terminal processing of fibrillar collagen precursors. Here we show that the 36 kDa, active fragment of PCPE enhances the activity of both the short (mouse) and long (chick) forms of PCP/BMP-1. The activity of PCPE is not associated with the formation of sedimentable procollagen aggregates. In addition, PCPE (36 kDa) has no effect in vitro on N-terminal procollagen processing by highly purified procollagen N-proteinase. Finally, when the amount of PCP is adjusted so that the rate of C-terminal processing remains constant, PCPE (36 kDa) has no effect on the assembly of collagen or pN-collagen in vitro following C-terminal processing of the corresponding precursors.
- Published
- 1997
180. Transpiration of a 64 year-old maritime pine stand in Portugal. 1. Seasonal course of water flux through maritime pine
- Author
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Loustau, D., Berbigier, P., Roumagnac, P., Arruda-Pacheco, C., David, J.S., Ferreira, M.I., Pereira, J.S., Tavares, R., Sexe et évolution, Département PEGASE [LBBE] (PEGASE), Laboratoire de Biométrie et Biologie Evolutive - UMR 5558 (LBBE), Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Institut National de Recherche en Informatique et en Automatique (Inria)-VetAgro Sup - Institut national d'enseignement supérieur et de recherche en alimentation, santé animale, sciences agronomiques et de l'environnement (VAS)-Centre National de la Recherche Scientifique (CNRS)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Institut National de Recherche en Informatique et en Automatique (Inria)-VetAgro Sup - Institut national d'enseignement supérieur et de recherche en alimentation, santé animale, sciences agronomiques et de l'environnement (VAS)-Centre National de la Recherche Scientifique (CNRS)-Laboratoire de Biométrie et Biologie Evolutive - UMR 5558 (LBBE), and Université de Lyon-Université de Lyon-Institut National de Recherche en Informatique et en Automatique (Inria)-VetAgro Sup - Institut national d'enseignement supérieur et de recherche en alimentation, santé animale, sciences agronomiques et de l'environnement (VAS)-Centre National de la Recherche Scientifique (CNRS)
- Subjects
[SDV.OT]Life Sciences [q-bio]/Other [q-bio.OT] - Published
- 1996
181. Procollagen C-proteinase enhancer is localised to dense connective tissue
- Author
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H. Thorp, E. Kessler, David J.S. Hulmes, A.J. Robson, H.M. Bear, J. Stewart, and Deleage, Gilbert
- Subjects
Dense connective tissue ,PROCOLLAGEN C-PROTEINASE ,Pathology ,medicine.medical_specialty ,medicine.anatomical_structure ,Chemistry ,Reticular connective tissue ,medicine ,[SDV.BBM] Life Sciences [q-bio]/Biochemistry, Molecular Biology ,Connective tissue ,Enhancer ,Molecular Biology - Abstract
xxx
- Published
- 1996
182. Transpiration of a 64-year old maritime pine stand in Portugal
- Author
-
Berbigier, Paul, Bonnefond, J.M., Loustau, Denis, Ferreira, M.I., David, J.S., Pereira, J.S., ProdInra, Migration, Unité de bioclimatologie, Institut National de la Recherche Agronomique (INRA), and Unité de recherches forestières (BORDX PIERR UR )
- Subjects
[SDV.EE]Life Sciences [q-bio]/Ecology, environment ,FLUX DE VAPEUR D'EAU ,[SDV.EE] Life Sciences [q-bio]/Ecology, environment ,PIN MARITIME ,ComputingMilieux_MISCELLANEOUS - Abstract
International audience
- Published
- 1996
183. Sizzled Is Unique among Secreted Frizzled-related Proteins for Its Ability to Specifically Inhibit Bone Morphogenetic Protein-1 (BMP-1)/Tolloid-like Proteinases
- Author
-
Bijakowski, Cécile, primary, Vadon-Le Goff, Sandrine, additional, Delolme, Frédéric, additional, Bourhis, Jean-Marie, additional, Lécorché, Pascaline, additional, Ruggiero, Florence, additional, Becker-Pauly, Christoph, additional, Yiallouros, Irene, additional, Stöcker, Walter, additional, Dive, Vincent, additional, Hulmes, David J.S., additional, and Moali, Catherine, additional
- Published
- 2012
- Full Text
- View/download PDF
184. Prey-abundance affects zooplankton assimilation efficiency and the outcome of biogeochemical models
- Author
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Montagnes, David J.S., primary and Fenton, Andy, additional
- Published
- 2012
- Full Text
- View/download PDF
185. REDISTRIBUTION OF WATER WITHIN THE ABOVEGROUND PART OF TREES
- Author
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Nadezhdina, N., primary, Nadezhdin, V., additional, Gebauer, R., additional, Cermák, J., additional, David, J.S., additional, David, T.S., additional, Jimenez, M.S., additional, and Morales, D., additional
- Published
- 2012
- Full Text
- View/download PDF
186. Procollagen C-proteinase Enhancer Stimulates Procollagen Processing by Binding to the C-propeptide Region Only
- Author
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Vadon-Le Goff, Sandrine, primary, Kronenberg, Daniel, additional, Bourhis, Jean-Marie, additional, Bijakowski, Cécile, additional, Raynal, Nicolas, additional, Ruggiero, Florence, additional, Farndale, Richard W., additional, Stöcker, Walter, additional, Hulmes, David J.S., additional, and Moali, Catherine, additional
- Published
- 2011
- Full Text
- View/download PDF
187. Phenology and growth dynamics in Mediterranean evergreen oaks: Effects of environmental conditions and water relations
- Author
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Pinto, C.A., primary, Henriques, M.O., additional, Figueiredo, J.P., additional, David, J.S., additional, Abreu, F.G., additional, Pereira, J.S., additional, Correia, I., additional, and David, T.S., additional
- Published
- 2011
- Full Text
- View/download PDF
188. Assembly of Collagen Fibrils de Novo from Soluble Precursors: Polymerization and Copolymerization of Procollagen, pN-Collagen, and Mutated Collagens
- Author
-
David J.S. Hulmes and Darwin J. Prockop
- Subjects
Procollagen peptidase ,Materials science ,Polymerization ,Biochemistry ,Copolymer ,Collagen fibril - Published
- 1994
- Full Text
- View/download PDF
189. Identification of integrin alpha 2 beta 1 as cell surface receptor for the carboxyl-terminal propeptide of type I procollagen
- Author
-
Martin J. Humphries, David J.S. Hulmes, A P Mould, Rodney B. Watson, Susan A. Weston, and Deleage, Gilbert
- Subjects
biology ,Chemistry ,Integrin ,Fibrillogenesis ,Cell Biology ,Biochemistry ,Collagen receptor ,Procollagen peptidase ,Integrin alpha M ,Cell surface receptor ,biology.protein ,[SDV.BBM] Life Sciences [q-bio]/Biochemistry, Molecular Biology ,Integrin, beta 6 ,Molecular Biology ,psychological phenomena and processes ,G alpha subunit - Abstract
The carboxyl-terminal propeptide of procollagen type I (CPP-I) plays a key role in the regulation of collagen fibrillogenesis. In addition, it has been reported that, after cleavage from procollagen, CPP-I exerts feedback control of collagen biosynthesis. To further elucidate the mechanisms involved in each of these processes, we have investigated the nature of cell surface receptors for CPP-I. CPP-I affinity chromatography, using detergent extracts of iodinated HT1080 cells and EDTA elution, resulted in the isolation of two polypeptides of molecular mass 160 and 110 kDa. Since the migratory behavior of these polypeptides under nonreducing and reducing conditions was characteristic of a subset of integrin receptors, their reactivity with anti-integrin monoclonal antibodies was tested. Antibodies directed against the alpha 2 and beta 1 subunits specifically immunoprecipitated both CPP-I-binding polypeptides, indicating that the CPP-I receptor is the integrin alpha 2 beta 1. CPP-I was found to support the attachment and spreading of HT1080 cells, demonstrating that it can function as an adhesion protein. Two other approaches supported the identification of alpha 2 beta 1 as the CPP-I receptor. First, anti-functional anti-integrin monoclonal antibodies directed against the alpha 2 and beta 1 subunits completely abrogated the adhesive activity of CPP-I and, second, highly purified CPP-I bound specifically to alpha 2 beta 1-containing integrin preparations in a solid-phase receptor-ligand binding assay. These findings have important implications for the function of fibrillar collagen carboxyl-terminal propeptides and for the role played by integrins in the regulation of cellular phenotype.The carboxyl-terminal propeptide of procollagen type I (CPP-I) plays a key role in the regulation of collagen fibrillogenesis. In addition, it has been reported that, after cleavage from procollagen, CPP-I exerts feedback control of collagen biosynthesis. To further elucidate the mechanisms involved in each of these processes, we have investigated the nature of cell surface receptors for CPP-I. CPP-I affinity chromatography, using detergent extracts of iodinated HT1080 cells and EDTA elution, resulted in the isolation of two polypeptides of molecular mass 160 and 110 kDa. Since the migratory behavior of these polypeptides under nonreducing and reducing conditions was characteristic of a subset of integrin receptors, their reactivity with anti-integrin monoclonal antibodies was tested. Antibodies directed against the alpha 2 and beta 1 subunits specifically immunoprecipitated both CPP-I-binding polypeptides, indicating that the CPP-I receptor is the integrin alpha 2 beta 1. CPP-I was found to support the attachment and spreading of HT1080 cells, demonstrating that it can function as an adhesion protein. Two other approaches supported the identification of alpha 2 beta 1 as the CPP-I receptor. First, anti-functional anti-integrin monoclonal antibodies directed against the alpha 2 and beta 1 subunits completely abrogated the adhesive activity of CPP-I and, second, highly purified CPP-I bound specifically to alpha 2 beta 1-containing integrin preparations in a solid-phase receptor-ligand binding assay. These findings have important implications for the function of fibrillar collagen carboxyl-terminal propeptides and for the role played by integrins in the regulation of cellular phenotype.
- Published
- 1994
190. Structural requirements for fibromodulin binding to collagen and the control of type I collagen fibrillogenesis
- Author
-
Marguerite-Marie Boutillon, D. Goldschmidt, David J.S. Hulmes, Bernard Font, and Denise Eichenberger
- Subjects
Collagen, type I, alpha 1 ,Chemistry ,Fibrillogenesis ,Cell Biology ,Molecular Biology ,Fibromodulin ,Type I collagen ,Pathology and Forensic Medicine ,Cell biology - Published
- 2002
- Full Text
- View/download PDF
191. Alginate beads stabilise chondrocyte phenotype despite abnormal collagen assembly
- Author
-
David J.S. Hulmes, M.M. Marsden, Jonathan Bard, J. M. Anderson-Mackenzie, Simon P. Robins, and K.E. Gregory
- Subjects
Chemistry ,Cell Biology ,Chondrocyte phenotype ,Molecular Biology ,Pathology and Forensic Medicine ,Cell biology - Published
- 2002
- Full Text
- View/download PDF
192. Processing of Procollagen III by Meprins: New Players in Extracellular Matrix Assembly?
- Author
-
Kronenberg, Daniel, primary, Bruns, Bernd C., additional, Moali, Catherine, additional, Vadon-Le Goff, Sandrine, additional, Sterchi, Erwin E., additional, Traupe, Heiko, additional, Böhm, Markus, additional, Hulmes, David J.S., additional, Stöcker, Walter, additional, and Becker-Pauly, Christoph, additional
- Published
- 2010
- Full Text
- View/download PDF
193. Role of the Netrin-like Domain of Procollagen C-Proteinase Enhancer-1 in the Control of Metalloproteinase Activity
- Author
-
Bekhouche, Mourad, primary, Kronenberg, Daniel, additional, Vadon-Le Goff, Sandrine, additional, Bijakowski, Cécile, additional, Lim, Ngee Han, additional, Font, Bernard, additional, Kessler, Efrat, additional, Colige, Alain, additional, Nagase, Hideaki, additional, Murphy, Gillian, additional, Hulmes, David J.S., additional, and Moali, Catherine, additional
- Published
- 2010
- Full Text
- View/download PDF
194. Patterns of Genetic Diversity in the Marine Heterotrophic Flagellate Oxyrrhis marina (Alveolata: Dinophyceae)
- Author
-
Lowe, Chris D., primary, Montagnes, David J.S., additional, Martin, Laura E., additional, and Watts, Phillip C., additional
- Published
- 2010
- Full Text
- View/download PDF
195. The prevalence of intestinal protozoans in HIV/AIDS patients in Abuja, Nigeria.
- Author
-
Udeh, E.O, primary, Goselle, O.N, additional, D-Popova, D.D, additional, Abelau, M, additional, Popov, T.V, additional, Jean, N, additional, and DAVID, J.S, additional
- Published
- 2010
- Full Text
- View/download PDF
196. Redescription of Strombidium oculatum Gruber 1884 (Ciliophora, Oligotrichia)
- Author
-
Montagnes, David J.S., Lowe, Chris D., Poulton, Alex, Jonsson, Per R., Montagnes, David J.S., Lowe, Chris D., Poulton, Alex, and Jonsson, Per R.
- Abstract
The marine, tide pool-dwelling ciliate Stombidium oculatum was redescribed using live, stained, SEM, and TEM material prepared from samples collected from pools on the Isle of Man (Irish Sea) and Brittany (France). Also, we reviewed the older German and French works that reported on ciliates collected in the Mediterranean and Brittany, respectively. The Brittany and Isle of Man populations of the ciliate were considered identical. Some morphological and behavioural differences exist between the Brittany-Isle of Man populations and the Mediterranean populations, but they were insufficient to distinguish different taxa. Thus, taxa from all three locations were considered to be conspecific. Key features used to describe the ciliate were+morphology and ultrastructure of the free-swimming ciliate; cyst morphology; presence of mixotrophic-chloroplasts; presence of an eye spot composed of stigma obtained from chlorophyte prey; division, morphogenesis, and nuclear structure; live observations and behaviour, including the encystment-excystment cycle. Based on morphological and behavioural characteristics the taxon was distinguished from other similar species, and a neotype has been designated as no type material exists.
- Published
- 2002
197. Procollagen binding to sphingomyelin
- Author
-
A. A. Choglay, Ian F. Purdom, David J.S. Hulmes, and Deleage, Gilbert
- Subjects
HEPES ,Phosphatidylethanolamine ,biology ,Phospholipid ,Cell Biology ,Phosphatidylserine ,Biochemistry ,chemistry.chemical_compound ,Procollagen peptidase ,chemistry ,Phosphatidylcholine ,biology.protein ,[SDV.BBM] Life Sciences [q-bio]/Biochemistry, Molecular Biology ,Bovine serum albumin ,Sphingomyelin ,Molecular Biology - Abstract
The interactions of [3H]procollagen I with various phospholipids were studied by density gradient centrifugation. At physiological conditions of pH, ionic strength, and temperature, there was no evidence for procollagen binding to phosphatidylcholine, phosphatidylethanolamine, phosphatidylinositol, or phosphatidylserine liposomes. In contrast, procollagen I bound strongly to sphingomyelin liposomes in a reversible and saturable manner, with an apparent dissociation constant (Kd) of 2.6 nM. Binding occurred over a range of temperatures (4-37 degrees C) and was relatively unaffected by salt concentrations up to 1.2 M NaCl. Binding was observed in phosphate buffers, but not in the presence of high concentrations of Tris or Hepes. Bovine serum albumin had no effect on procollagen binding to sphingomyelin, and neither did unlabeled type I collagen, with or without the nonhelical telopeptides. Procollagen II and denatured procollagen I also bound to sphingomyelin. Procollagen binding to sphingomyelin at 35 degrees C was considerably reduced when small amounts of phosphatidylcholine were present, although binding was partially restored when the temperature was reduced below the corresponding phase transition temperature. Purified unlabeled procollagen COOH-terminal propeptides successfully competed for binding, and 125I-labeled COOH-terminal propeptides bound to sphingomyelin in the absence of procollagen. Weaker binding to sphingomyelin, mediated by the collagen triple helical region, was also observed; but this was dominated by the sphingomyelin-COOH-terminal propeptide interaction. The data suggest a novel mechanism for matrix vesicle-mediated biomineralization.The interactions of [3H]procollagen I with various phospholipids were studied by density gradient centrifugation. At physiological conditions of pH, ionic strength, and temperature, there was no evidence for procollagen binding to phosphatidylcholine, phosphatidylethanolamine, phosphatidylinositol, or phosphatidylserine liposomes. In contrast, procollagen I bound strongly to sphingomyelin liposomes in a reversible and saturable manner, with an apparent dissociation constant (Kd) of 2.6 nM. Binding occurred over a range of temperatures (4-37 degrees C) and was relatively unaffected by salt concentrations up to 1.2 M NaCl. Binding was observed in phosphate buffers, but not in the presence of high concentrations of Tris or Hepes. Bovine serum albumin had no effect on procollagen binding to sphingomyelin, and neither did unlabeled type I collagen, with or without the nonhelical telopeptides. Procollagen II and denatured procollagen I also bound to sphingomyelin. Procollagen binding to sphingomyelin at 35 degrees C was considerably reduced when small amounts of phosphatidylcholine were present, although binding was partially restored when the temperature was reduced below the corresponding phase transition temperature. Purified unlabeled procollagen COOH-terminal propeptides successfully competed for binding, and 125I-labeled COOH-terminal propeptides bound to sphingomyelin in the absence of procollagen. Weaker binding to sphingomyelin, mediated by the collagen triple helical region, was also observed; but this was dominated by the sphingomyelin-COOH-terminal propeptide interaction. The data suggest a novel mechanism for matrix vesicle-mediated biomineralization.
- Published
- 1993
198. Strong Cooperativity and Loose Geometry between CUB Domains Are the Basis for Procollagen C-Proteinase Enhancer Activity
- Author
-
Kronenberg, Daniel, primary, Vadon-Le Goff, Sandrine, additional, Bourhis, Jean-Marie, additional, Font, Bernard, additional, Eichenberger, Denise, additional, Hulmes, David J.S., additional, and Moali, Catherine, additional
- Published
- 2009
- Full Text
- View/download PDF
199. BOOK REVIEW
- Author
-
Montagnes, David J.S., primary
- Published
- 2009
- Full Text
- View/download PDF
200. Concise and pragmatic: Essential Management of Obstetric Emergencies
- Author
-
Hunter, David J.S.
- Subjects
Book Review - Published
- 1992
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