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Deep-sea corals have the potential to provide high-resolution paleotemperature records to evaluate oceanographic changes in settings that are vulnerable to current and future ocean warming. The isotopic records preserved in coral skeletal carbonate, however, are limited by their large offsets from isotopic equilibrium with seawater. These "vital effects" are the result of biological influences (kinetic and metabolic) on the calcification of coral skeletons and are well known to drive oxygen and carbon stable isotope ratios (δ18O and δ13C , respectively) away from isotopic equilibrium with environmental variables. In this study, two calcitic stylasterid corals (Errina fissurata) are sampled via cross sections through their primary growth axes to create skeletal δ18O and δ13C maps. The maps reveal a consistent trend of increasing isotopic values toward the innermost portion of the cross sections, with minimal spatial change in carbonate mineralogy, the average center values being ∼1 ‰ and ∼3 ‰ closer to seawater δ18O and δ13C equilibrium values, respectively. We investigate possible mechanisms for these isotopic trends, including potential growth patterns that would drive spatial isotopic trends. Our results highlight the diversity of the stylasterid coral family, and because of our unique sampling strategy, we can prescribe that E. fissurata corals with minimal mineralogical variability be sampled from the center portions of their stems to achieve accurate paleotemperature reconstructions. [ABSTRACT FROM AUTHOR]

Desert dust is an important source of essential metals for marine primary productivity, especially in oligotrophic systems surrounded by deserts, such as the Red Sea. However, there are very few studies on the effects of dust on reef-building corals and none on the response of corals to heat stress. We therefore supplied dust to two coral species (Stylophora pistillata and Turbinaria reniformis) kept under control conditions (26 °C) or heat stress (32 °C). Since dust releases large amounts of iron (Fe) in seawater, among other metals, the direct effect of different forms of Fe enrichment on coral photosynthesis was also tested. First, our results show that the desert dust altered the coral metallome by increasing the content of metals that are important for coral physiology (e.g. lithium (up to 5-fold), manganese (up to 4-fold in S. pistillata), iron (up to 3-fold in S. pistillata), magnesium (up to 1.3-fold), molybdenum (up to 1.5-fold in S. pistillata)). Overall, metal enrichment improved the photosynthetic performance of corals, especially under thermal stress (e.g. Pgross (up to 2-fold), Pnet (up to 10-fold), chlorophyll (up to 1.5-fold), symbionts (up to 1.6-fold)). However, Fe exposure (ferric chloride or ferric citrate) did not directly improve photosynthesis, suggesting that it is the combination of metals released by the dust, the so-called "metal cocktail effect", that has a positive impact on coral photophysiology. Dust also led to a decrease in Ni uptake (up to 1.4-fold in the symbionts), likely related to the nitrogen metabolism. Finally, we found that the isotopic signature of metals such as iron, zinc and copper is a good indicator of heat stress and dust exposure in corals. In conclusion, desert dust can increase coral resistance to bleaching by supplying corals with essential metals. [ABSTRACT FROM AUTHOR]

More than four decades ago, the discovery of a companion protein of immunoglobulins in myeloma cells and soon after, of their ability to associate with heavy chains, made the term immunoglobulin binding protein (BiP) emerge, prompting a tremendous amount of effort to understand their versatile cellular functions. BiPs belong to the heat shock protein (Hsp) 70 family and are crucial for protein folding and cellular stress responses. While extensively studied in model organisms such as Chlamydomonas, their roles in dinoflagellates, especially in photosynthetic Symbiodiniaceae, remain largely underexplored. Given the importance of Symbiodiniaceae-cnidarian symbiosis, critical for the sustaining of coral reef ecosystems, understanding the contribution of Hsps to stress resilience is essential; however, most studies have focused on Hsps in general but none on BiPs. Moreover, despite the critical role of light in the physiology of these organisms, research on light effects on BiPs from Symbiodiniaceae has also been limited. This review synthesizes the current knowledge from the literature and sequence data, which reveals a high degree of BiP conservation at the gene, protein, and structural levels in Symbiodiniaceae and other dinoflagellates. Additionally, we show the existence of a potential link between circadian clocks and BiP regulation, which would add another level of regulatory complexity. The evolutionary relationship among dinoflagellates overall suggests conserved functions and regulatory mechanisms, albeit expecting confirmation by experimental validation. Finally, our analysis also highlights the significant knowledge gap and underscores the need for further studies focusing on gene and protein regulation, promoter architecture, and structural conservation of Symbiodiniaceae and dinoglagellate BiPs in general. These will deepen our understanding of the role of BiPs in the Symbiodiniaceae-cnidarian interactions and dinoflagellate physiology. [ABSTRACT FROM AUTHOR]

In the face of rapid environmental change, restoration will need to emphasize innovative approaches that support the long‐term resilience of social and ecological systems. To this end, we highlight the critical, but often overlooked, role of adaptive capacity, which enables restoration practice, governance, and target ecosystems to adapt to directional environmental change. We identify three core attributes of adaptive capacity: (1) diversity, (2) connectivity, and (3) flexibility. For each attribute, we describe key strategies, including enhancing mechanisms of ecological memory, facilitating the generation of beneficial novelty, and developing governance structures that are flexible and anticipatory. These core attributes can also lead to maladaptive outcomes; careful consideration of a social‐ecological system's resilience and vulnerabilities to environmental change will likely be critical to avoid unwanted outcomes. Ultimately, implementing strategies that increase adaptive capacity can bolster restoration efficacy as it seeks to confront the global challenge of rapid environmental change. [ABSTRACT FROM AUTHOR]

Background: Extensive research on the diversity and functional roles of the microorganisms associated with reef-building corals has been promoted as a consequence of the rapid global decline of coral reefs attributed to climate change. Several studies have highlighted the importance of coral‐associated algae (Symbiodinium) and bacteria and their potential roles in promoting coral host fitness and survival. However, the complex coral holobiont extends beyond these components to encompass other entities such as protists, fungi, and viruses. While each constituent has been individually investigated in corals, a comprehensive understanding of their collective roles is imperative for a holistic comprehension of coral health and resilience. Results: The metagenomic analysis of the microbiome of the coral Oculina patagonica has revealed that fungi of the genera Aspergillus, Fusarium, and Rhizofagus together with the prokaryotic genera Streptomyces, Pseudomonas, and Bacillus were abundant members of the coral holobiont. This study also assessed changes in microeukaryotic, prokaryotic, and viral communities under three stress conditions: aquaria confinement, heat stress, and Vibrio infections. In general, stress conditions led to an increase in Rhodobacteraceae, Flavobacteraceae, and Vibrionaceae families, accompanied by a decrease in Streptomycetaceae. Concurrently, there was a significant decline in both the abundance and richness of microeukaryotic species and a reduction in genes associated with antimicrobial compound production by the coral itself, as well as by Symbiodinium and fungi. Conclusion: Our findings suggest that the interplay between microeukaryotic and prokaryotic components of the coral holobiont may be disrupted by stress conditions, such as confinement, increase of seawater temperature, or Vibrio infection, leading to a dysbiosis in the global microbial community that may increase coral susceptibility to diseases. Further, microeukaryotic community seems to exert influence on the prokaryotic community dynamics, possibly through predation or the production of secondary metabolites with anti-bacterial activity. 5jxNwVcR-vUc4t1YJ-ryph Video Abstract [ABSTRACT FROM AUTHOR]

Background: The Caridea, affiliated with Malacostraca, Decapoda, and Pleocyemata, constitute one of the most significant shrimp groups. They are widely distributed across diverse aquatic habitats worldwide, enriching their evolutionary history. In recent years, considerable attention has been focused on the classification and systematic evolution of Caridea, yet controversies still exist regarding the phylogenetic relationships among families. Methods: Here, the complete mitochondrial genome (mitogenome) sequences of five caridean species, namely Heterocarpus sibogae, Procletes levicarina, Macrobrachium sp., Latreutes anoplonyx, and Atya gabonensis, were determined using second-generation high-throughput sequencing technology. The basic structural characteristics, nucleotide composition, amino acid content, and codon usage bias of their mitogenomes were analyzed. Selection pressure values of protein-coding genes (PCGs) in species within the families Pandalidae, Palaemonidae, and Atyidae were also computed. Phylogenetic trees based on the nucleotide and amino acid sequences of 13 PCGs from 103 caridean species were constructed, and divergence times for various families within Caridea were estimated. Results: The mitogenome of these five caridean species vary in length from 15,782 to 16,420 base pairs, encoding a total of 37 or 38 genes, including 13 PCGs, 2 rRNA genes, and 22 or 23 tRNA genes. Specifically, L. anoplonyx encodes an additional tRNA gene, bringing its total gene count to 38. The base composition of the mitogenomes of these five species exhibited a higher proportion of adenine-thymine (AT) bases. Six start codons and four stop codons were identified across the five species. Analysis of amino acid content and codon usage revealed variations among the five species. Analysis of selective pressure in Pandalidae, Palaemonidae, and Atyidae showed that the Ka/Ks values of PCGs in all three families were less than 1, indicating that purifying selection is influencing on their evolution. Phylogenetic analysis revealed that each family within Caridea is monophyletic. The results of gene rearrangement and phylogenetic analysis demonstrated correlations between these two aspects. Divergence time estimation, supported by fossil records, indicated that the divergence of Caridea species occurred in the Triassic period of the Mesozoic era, with subsequent differentiation into two major lineages during the Jurassic period. Conclusions: This study explored the fundamental characteristics and phylogenetic relationships of mitogenomes within the infraorder Caridea, providing valuable insights into their classification, interspecific evolutionary patterns, and the evolutionary status of various Caridea families. The findings provide essential references for identifying shrimp species and detecting significant gene rearrangements within the Caridea infraorder. [ABSTRACT FROM AUTHOR]

Dinoflagellates are a remarkable group of protists, not only for their association with harmful algal blooms and coral reefs but also for their numerous characteristics deviating from the rules of eukaryotic biology. Genome research on dinoflagellates has lagged due to their immense genome sizes in most species (~ 1-250 Gbp). Nevertheless, the last decade marked a fruitful era of dinoflagellate genomics, with 27 genomes sequenced and many insights attained. This review aims to synthesize information from these genomes, along with other omic data, to reflect on where we are now in understanding dinoflagellates and where we are heading in the future. The most notable insights from the decade-long genomics work include: (1) dinoflagellate genomes have been expanded in multiple times independently, probably by a combination of rampant retroposition, accumulation of repetitive DNA, and genome duplication; (2) Symbiodiniacean genomes are highly divergent, but share about 3,445 core unigenes concentrated in 219 KEGG pathways; (3) Most dinoflagellate genes are encoded unidirectionally and are not intron-poor; (4) The dinoflagellate nucleus has undergone extreme evolutionary changes, including complete or nearly complete loss of nucleosome and histone H1, and acquisition of dinoflagellate viral nuclear protein (DVNP); (5) Major basic nuclear protein (MBNP), histone-like protein (HLP), and bacterial HU-like protein (HCc) belong to the same protein family, and MBNP can be the unifying name; (6) Dinoflagellate gene expression is regulated by poorly understood mechanisms, but microRNA and other epigenetic mechanisms are likely important; (7) Over 50% of dinoflagellate genes are "dark" and their functions remain to be deciphered using functional genetics; (8) Initial insights into the genomic basis of parasitism and mutualism have emerged. The review then highlights functionally unique and interesting genes. Future research needs to obtain a finished genome, tackle large genomes, characterize the unknown genes, and develop a quantitative molecular ecological model for addressing ecological questions. [ABSTRACT FROM AUTHOR]

Coral bleaching is occurring more frequently as the climate changes, with multiple mass mortality events recently recorded on the Great Barrier Reef. Thermal stress coupled with high irradiance have previously been shown to be primary causes for coral bleaching. Therefore, a reduction in either of these pressures could reduce coral stress and eventual bleaching. Herein, we report the early development of a novel technology capable of reducing the amount of light entering a water body by ~20% in open ocean conditions. This mono-particle "sun shield" consists of an ultra-thin monolayer material and reflective calcium carbonate particles. The monolayer enables spreading of the particles into a thin film across the water surface, with only small amounts of material needed: 7.1 g/m2. A numerical modelling case study of residence times and the build-up of reactive oxygen stress in corals showed that the successful application of a stable film over the Lizard Island reef flat could reduce the reactive oxygen stress to below bleaching levels across approximately 1.5 km2 of reef area. With further development, mono-particle films such as this have the potential to be deployed over at-risk coral reefs at relatively small scales during predicted heatwave conditions, potentially reducing the severity of bleaching on coral reefs. [ABSTRACT FROM AUTHOR]

To effectively protect the marine environment, it is crucial to establish effective environ mental monitoring platforms. Traditional marine environmental monitoring methods heavily rely on morphological identification and field expertise, with the sampling process being disruptive and potentially destructive to vulnerable marine environments. In light of emerging biomonitoring needs and biodiversity declines, we reviewed the urgently needed, ongoing advances in developing effective, noninvasive, and innovative monitoring methods and systems to examine the complex marine environment for better strategic conservation and protection, using the coral ecosystem as one of the representative forefront examples in marine protection. This review summarizes current trends and efforts in transitioning into more standardizable and automatable utilizations of environmental DNA metabarcoding-based monitoring strategies and high-resolution underwater optical imaging monitoring systems as two of the promising pillars for the next generation of noninvasive biomonitoring and associated applications. The assistance of artificial intelligence for environmental DNA metabarcoding and high-resolution underwater optical imaging into an empowered, all-rounded monitoring platform for enhanced monitoring capacity is discussed as a highly potent direction for future research exploration. This review will be a cornerstone reference for the future development of artificial intelligence-assisted, noninvasive, and innovative marine environmental monitoring systems. [ABSTRACT FROM AUTHOR]

Hard corals are precious marine creatures that comprise a complex form of symbiosis between symbiont algae and coral holobiont. For decades, corals have been challenged by disastrous events of climatic and anthropogenic etiologies. Such complex interactions have resulted in devastating disease episodes among coral populations worldwide. There is a scarcity of information about diseases of hard corals in the Gulf of Aqaba, Red Sea, Egypt. Therefore, the current study aims to investigate various diseases of hard corals in this pristine habitat within the Red Sea. Whitening and dark green dots were the most noticeable morphopathology among hard coral samples collected from Gulf of Aqaba. Some human-based pathogens, such as Rothia kristinae, Cupriavidus pauculus, and Delftia acidovorans, were isolated from some of the examined coral tissues, while the Burkholderia cepacia group was isolated from the nearby sediment. The final identities of the above-mentioned bacterial isolates have been molecularly confirmed using 16S RNA sequence analysis. Pathologically, diseased corals have been observed with changes such as some forms of tissue losses, degenerative changes, and eosinophilic granular amoebocytes/agranular cells infiltration. The frequent detection of some microbial pathogens of human origin could suggest deleterious forms of environmental pollution of anthropogenic origin. Ultimately, the entire existence of hard coral populations is mostly threatened by swiftly erupting climatic changes as well as environmental aquatic pollution. Thus, the current study concludes the real need for extensive ecological, biological, pathological, and immunological studies to determine the eminent threats and propose possible control means for better/sustainable hard coral populations. [ABSTRACT FROM AUTHOR]

As a part of the important species that form coral reef ecosystems, stony corals have become a potential source of pharmacologically active lead compounds for an increasing number of compounds with novel chemical structures and strong biological activity. In this study, the secondary metabolites and biological activities are reported for Aspergillus terreus C21-1, an epiphytic fungus acquired from Porites pukoensis collected from Xuwen Coral Reef Nature Reserve, China. This strain was cultured in potato dextrose broth (PDB) media and rice media with different salinities based on the OSMAC strategy. The mycelial morphology and high-performance thin layer chromatographic (HPTLC) fingerprints of the fermentation extracts together with bioautography were recorded. Furthermore, an untargeted metabolomics study was performed using principal component analysis (PCA), orthogonal projection to latent structure discriminant analysis (O-PLSDA), and feature-based molecular networking (FBMN) to analyze their secondary metabolite variations. The comprehensive results revealed that the metabolite expression in A. terreus C21-1 differed significantly between liquid and solid media. The metabolites produced in liquid medium were more diverse but less numerous compared to those in solid medium. Meanwhile, the mycelial morphology underwent significant changes with increasing salinity under PDB cultivation conditions, especially in PDB with 10% salinity. Untargeted metabolomics revealed significant differences between PDB with 10% salinity and other media, as well as between liquid and solid media. FBMN analysis indicated that alkaloids, which might be produced under high salt stress, contributed largely to the differences. The biological activities results showed that six groups of crude extracts exhibited acetylcholinesterase (AChE) inhibitory activities, along with 1,1-diphenyl-2-picrylhydrazyl (DPPH) free radical scavenging and antibacterial activities. The results of this study showed that the increase in salinity favored the production of unique alkaloid compounds by A. terreus C21-1. [ABSTRACT FROM AUTHOR]

To investigate the effects of predation by the paddle crab Charybdis japonica on the culture and survival of scallops (Mizuhopecten yessoensis) during bottom culture, we investigated the behavioral characteristics of three sizes (small, medium, and large) of scallops in response to exposure to crabs. We found that scallops escaped from crab predation by continuous shell closure or movement. Shell closure force increased with scallop size, and scallops of the same size that were stimulated by the presence of crabs closed their shell more frequently than control scallops. We also measured the activities of superoxide dismutase, catalase, arginine kinase, and octopine dehydrogenase in the gill, adductor muscle, and mantle of scallops before and after exposure to predation. Tissues that showed significant differences between control and test specimens were selected for deep sequencing of the transcriptome to identify and validate the key genes that were sensitive to predation. We found that when M. yessoensis is stimulated by the presence of predators, its behavioral characteristics and related physiological and ecological indexes undergo significant changes. The results are relevant for developing specifications for M. yessoensis seedling casting during bottom culture. [ABSTRACT FROM AUTHOR]

Photochemical efficiency ( Fv /Fm) was compared between a common symbiotic bioeroding sponge, Cliona cf. orientalis, and a common reef-builder, Acropora palifera using pulse amplitude modulated fluorescence (PAM). The study was conducted on Sesoko Island, Okinawa, where reefs were severely damaged during previous bleaching episodes. Sponge and coral dinoflagellate symbionts were treated with heat and light in a tank experiment, both in hospite (=still within their host) and isolated from their hosts. We found significant differences for photochemical efficiency of holobionts (=host and symbiont together) compared to the isolate symbionts and over time. All symbionts suffered in isolation and displayed stronger reactions to the treatments, and there was evidence for increasing damage despite returning to control conditions. However, because of large variability of the bi-symbiont coral samples and restrictions of the experimental design, our main results remained inconclusive, with no significant differences between sponge and coral samples and between the different stress treatments. Judging the results based on the uniform trends in the subsets of data, the G-clade sponge symbionts appeared to be more stress tolerant than the C- and D-clade coral symbionts, with no treatment effects in hospite and less damage in isolation compared to the coral symbionts, but this is an unconfirmed assumption. Isolated sponge symbionts were very resistant against heat stress, but may have suffered from light stress. In hospite, the latter risk can be countered by the sponge’s 3-dimensional morphology, the endolithic life style that affords shading, and by behavioural adaptation, i.e. the ability to move symbionts away from the source of stress. Overall, C. cf. orientalis symbionts displayed a more stable photochemical efficiency during and after stress than those of A. palifera. Results of this study suggest that with climate change C. cf. orientalis might have a better survival potential than A. palifera, but further investigations are necessary. [ABSTRACT FROM AUTHOR]

Multiple scattering of light on coral skeleton enhances light absorption efficiency of coral symbionts and plays a key role in the regulation of their internal diffuse light field. To understand the dependence of this enhancement on skeleton meso- and macrostructure, we analysed the scattering abilities of naked coral skeletons for 74 Indo-Pacific species. Sensitive morphotypes to thermal and light stress, flat-extraplanate and branching corals, showed the most efficient structures, while massive-robust species were less efficient. The lowest light-enhancing scattering abilities were found for the most primitive colonial growth form: phaceloid. Accordingly, the development of highly efficient light-collecting structures versus the selection of less efficient but more robust holobionts to cope with light stress may constitute a trade-off in the evolution of modern symbiotic scleractinian corals, characterizing two successful adaptive solutions. The coincidence of the most important structural modifications with epitheca decline supports the importance of the enhancement of light transmission across coral skeleton in modern scleractinian diversification, and the central role of these symbioses in the design and optimization of coral skeleton. Furthermore, the same ability that lies at the heart of the success of symbiotic corals as coral-reef-builders can also explain the 'Achilles's heel' of these symbioses in a warming ocean. [ABSTRACT FROM AUTHOR]

Polycyclic aromatic hydrocarbons (PAHs) are persistent organic pollutants that pose significant environmental and health risks. These compounds originate from both natural phenomena, such as volcanic activity and wildfires, and anthropogenic sources, including vehicular emissions, industrial processes, and fossil fuel combustion. Their classification as carcinogenic, mutagenic, and teratogenic substances link them to various cancers and health disorders. PAHs are categorized into low-molecular-weight (LMW) and high-molecular-weight (HMW) groups, with HMW PAHs exhibiting greater resistance to degradation and a tendency to accumulate in sediments and biological tissues. Soil serves as a primary reservoir for PAHs, particularly in areas of high emissions, creating substantial risks through ingestion, dermal contact, and inhalation. Coastal and aquatic ecosystems are especially vulnerable due to concentrated human activities, with PAH persistence disrupting microbial communities, inhibiting plant growth, and altering ecosystem functions, potentially leading to biodiversity loss. In plants, PAH contamination manifests as a form of abiotic stress, inducing oxidative stress, cellular damage, and growth inhibition. Plants respond by activating antioxidant defenses and stress-related pathways. A notable aspect of plant defense mechanisms involves plant-derived extracellular vesicles (PDEVs), which are membrane-bound nanoparticles released by plant cells. These PDEVs play a crucial role in enhancing plant resistance to PAHs by facilitating intercellular communication and coordinating defense responses. The interaction between PAHs and PDEVs, while not fully elucidated, suggests a complex interplay of cellular defense mechanisms. PDEVs may contribute to PAH detoxification through pollutant sequestration or by delivering enzymes capable of PAH degradation. Studying PDEVs provides valuable insights into plant stress resilience mechanisms and offers potential new strategies for mitigating PAH-induced stress in plants and ecosystems. [ABSTRACT FROM AUTHOR]

This research aimed to examine the interplay among carotenoids, total polyphenols, and indole alkaloids for the discovery of new bioactive compounds using "simplex-centroid" designs and response surface methodology (RSM). The antioxidant (AOA) and anti-inflammatory (AIA) activities of mixtures containing different proportions of each compound were evaluated by measuring the percentage inhibition of oxidation and spontaneous inflammation. The results showed that the highest AOAs were obtained with different mixtures of polyphenols, indole alkaloids, and carotenoids. The DPPH test revealed that a mixture of 16.94% polyphenols and 83.05% indole alkaloids produced the best results, whereas, for the ABTS test, 100% polyphenols gave the best results. The FRAP assay showed that the best-performing mixture was composed of 85.96% carotenoids and 14.03% polyphenols, with an IC50 of 8.85 ± 1.17 μg/mL. In contrast, the most potent AIA was obtained with 100% carotenoids. Model validation tests were performed and showed that the experimentally observed values for AOA and AIA were not significantly different from the values estimated by the fitted models. The results also showed that the RSM model can be used to estimate the behavior of mixed compounds in the development of new functional ingredients or the discovery of new bioactive compounds with pharmacological properties. Finally, the results also suggested that there is a good correlation between several AOA and AIA assays, which makes natural substances combining these biological activities particularly interesting. [ABSTRACT FROM AUTHOR]

Globally, coral reef ecosystems are undergoing significant change related to climate change and anthropogenic activities. Yet, the Cuban archipelago of Jardines de la Reina (JR) has experienced fewer stressors due to its geographical remoteness and high level of conservation. This study examines the surface and benthic reef water microbial communities associated with 32 reef sites along the JR archipelago and explores the relationship between the community composition of reef microorganisms examined using bacterial and archaeal small subunit ribosomal RNA gene (16S rRNA gene) sequencing compared to geographic, conservation/protection level, environmental, physicochemical, and reef benthic and pelagic community features. Reef nutrient concentrations were low and microbial communities dominated by picocyanobacteria and SAR11 and SAR86 clade bacteria, characteristic of an oligotrophic system. Reef water microbial community alpha and beta diversity both varied throughout the archipelago and were strongly related to geography. Three sites in the western archipelago showed unique microbial communities, which may be related to the hydrogeography and influences of the channels linking the Ana Maria gulf with the Caribbean Sea. Overall, this work provides the first extensive description of the reef microbial ecology of the Caribbean's 'Crown Jewel' reef system and a framework to evaluate the influence of ongoing stressors on the reef microorganisms. [ABSTRACT FROM AUTHOR]

Algal lipidomics is a new field of research that is gaining increasing popularity. The use of high-performance liquid chromatography–mass spectrometry (HPLC-MS) has made it possible to accurately determine the structure of each lipid molecule in a sample. Since algae are considered as a promising source of various compounds with pharmacological and biotechnological potential, including bioactive lipids and polyunsaturated fatty acids, lipidomics research of this group of organisms are of particular interest. The algae lipidome has high plasticity, which is due to the influence of abiotic and biotic environmental factors, and the observed changes in lipid composition are, as a rule, adaptive reactions. This review examines current research in the field of algal lipidomics, discusses the results of studying the influence of various environmental factors, such as temperature, light intensity, nutrient concentration, epi- and endophytic infections on the algae lipidome, and seasonal and geographical plasticity of algae lipidome; questions about the adaptation mechanisms of algae at the level of individual lipid molecular species are considered, and gaps in this area of research are noted. [ABSTRACT FROM AUTHOR]

Coral reefs rely heavily on reef fish for their health, yet overfishing has resulted in their decline, leading to an increase in fast-growing algae and changes in reef ecosystems, a phenomenon described as the phase-shift. A clearer understanding of the intricate interplay between herbivorous, their food, and their gut microbiomes could enhance reef health. This study examines the gut microbiome and isotopic markers (δ13C and δ15N) of four key nominally herbivorous reef fish species (Acanthurus chirurgus, Kyphosus sp., Scarus trispinosus, and Sparisoma axillare) in the Southwestern Atlantic's Abrolhos Reef systems. Approximately 16.8 million 16S rRNA sequences were produced for the four fish species, with an average of 317,047 ± 57,007 per species. Bacteria such as Proteobacteria, Firmicutes, and Cyanobacteria were prevalent in their microbiomes. These fish show unique microbiomes that result from co-diversification, diet, and restricted movement. Coral-associated bacteria (Endozoicomonas, Rhizobia, and Ruegeria) were found in abundance in the gut contents of the parrotfish species Sc. trispinosus and Sp. axillare. These parrotfishes could aid coral health by disseminating such beneficial bacteria across the reef. Meanwhile, Kyphosus sp. predominantly had Pirellulaceae and Rhodobacteraceae. Four fish species had a diet composed of turf components (filamentous Cyanobacteria) and brown algae (Dictyopteris). They also had similar isotopic niches, suggesting they shared food sources. A significant difference was observed between the isotopic signature of fish muscular gut tissue and gut contents, pointing to the role that host genetics and gut microbes play in differentiating fish tissues. [ABSTRACT FROM AUTHOR]

Crustaceans are one of the most widespread and speciose groups of marine organisms, fulfilling multiple ecological roles in numerous ecosystems. On coral reefs, many crustacean species form associations with scleractinian corals. Although the Red Sea is considered a biodiversity hotspot, few studies examined the diversity of coral-associated crustacean communities to date. In this study, 460 decapod crustaceans were recovered from 67 coral colonies of the three branching genera Acropora, Pocillopora and Stylophora in the central Saudi Arabian Red Sea. Crabs and shrimps were morphologically identified to the lowest taxonomic level possible, and portions of the mitochondrial COI and 16S rRNA genes were amplified with the objective of assessing their diversity and phylogenetic relationships. Finally, patterns of co-occurrence were evaluated to investigate the presence of species-specific symbiotic epifauna on different host corals. Overall, we recovered four families, five genera, and nine species of Red Sea crabs, nested into 11 molecular clades, and two families, eight genera and 11 species of shrimps, grouped within 12 lineages. Crabs of the species Trapezia tigrina were found to be exclusively associated with Pocillopora corals, while Tetralia crabs and the shrimps Jocaste japonica and Harpilius lutescens only occurred on Acropora colonies, providing evidence that potential loss of host corals due to local and global impacts could lead to consequent shifts in the symbiotic communities on reefs and to the loss of certain associated taxa. This study represents an advancement towards the understanding and molecular characterization of coral-associated benthic communities in the Red Sea and lays the ground for further research assessing the patterns of biodiversity, evolution, and ecological preferences of these organisms in the area. [ABSTRACT FROM AUTHOR]

Symbiotic microorganisms in reef-building corals, including algae, bacteria, archaea, fungi, and viruses, play critical roles in the adaptation of coral hosts to adverse environmental conditions. However, their adaptation and functional relationships in nutrient-rich environments have yet to be fully explored. This study investigated Duncanopsammia peltata and the surrounding seawater and sediments from protected and non-protected areas in the summer and winter in Dongshan Bay. High-throughput sequencing was used to characterize community changes, co-occurrence patterns, and factors influencing symbiotic coral microorganisms (zooxanthellae, bacteria, and archaea) in different environments. The results showed that nutrient enrichment in the protected and non-protected areas was the greatest in December, followed by the non-protected area in August. In contrast, the August protected area had the lowest nutrient enrichment. Significant differences were found in the composition of the bacterial and archaeal communities in seawater and sediments from different regions. Among the coral symbiotic microorganisms, the main dominant species of zooxanthellae is the C1 subspecies (42.22–56.35%). The dominant phyla of bacteria were Proteobacteria, Cyanobacteria, Firmicutes, and Bacteroidota. Only in the August protected area did a large number (41.98%) of SAR324_cladeMarine_group_B exist. The August protected and non-protected areas and December protected and non-protected areas contained beneficial bacteria as biomarkers. They were Nisaea, Spiroplasma, Endozoicomonas, and Bacillus. No pathogenic bacteria appeared in the protected area in August. The dominant phylum in Archaea was Crenarchaeota. These symbiotic coral microorganisms' relative abundances and compositions vary with environmental changes. The enrichment of dissolved inorganic nitrogen in environmental media is a key factor affecting the composition of coral microbial communities. Co-occurrence analysis showed that nutrient enrichment under anthropogenic disturbances enhanced the interactions between coral symbiotic microorganisms. These findings improve our understanding of the adaptations of coral holobionts to various nutritional environments. [ABSTRACT FROM AUTHOR]

Background: Coral diseases are significant drivers of global coral reef degradation, with pathogens dominated by Vibrio coralliilyticus playing a prominent role in the development of coral diseases. Coral phenotype, symbiotic microbial communities, and host transcriptional regulation have been well-established as factors involved in determining coral disease resistance, but the underlying mechanisms remain incompletely understood. Methods: This study employs high-throughput sequencing to analyse the symbiotic microbial and transcriptional response of the hosts in order to evaluate the disease resistance of Acropora valida and Turbinaria peltata exposed to Vibrio coralliilyticus. Results: A. valida exhibited pronounced bleaching and tissue loss within 7 h of pathogen infection, whereas T. peltata showed no signs of disease throughout the experiment. Microbial diversity analyses revealed that T. peltata had a more flexible microbial community and a higher relative abundance of potential beneficial bacteria compared to A. valida. Although Vibrio inoculation resulted in a more significant decrease in the Symbiodiniaceae density of A. valida compared to that of T. peltata, it did not lead to recombination of the coral host and Symbiodiniaceae in either coral species. RNA-seq analysis revealed that the interspecific differences in the transcriptional regulation of hosts after Vibrio inoculation. Differentially expressed genes in A. valida were mainly enriched in the pathways associated with energy supply and immune response, such as G protein-coupled receptor signaling, toll-like receptor signaling, regulation of TOR signaling, while these genes in T. peltata were mainly involved in the pathway related to immune homeostasis and ion transport, such as JAK-STAT signaling pathway and regulation of ion transport. Conclusions: Pathogenic challenges elicit different microbial and transcriptional shifts across coral species. This study offers novel insights into molecular mechanisms of coral resistance to disease. [ABSTRACT FROM AUTHOR]

The symbiotic relationships between coral animal host and autotrophic dinoflagellates are based on the mutual exchange and tight control of nutritional inputs supporting successful growth. The corals Sinularia heterospiculata and Acropora aspera were cultivated using a flow-through circulation system supplying seawater during cold and warm seasons of the year, then sorted into host cells and symbionts and subjected to phylogenetic, morphological, and advanced lipid analyses. Here we show, that the lipidomes of the dinoflagellates Cladocopium C1/C3 and acroporide-specific Cladocopium hosted by the corals, are determined by lipidomic features of different thermosensitivity and unique betaine- and phospholipid molecular species. Phosphatidylserines and ceramiaminoethylphosphonates are not detected in the symbionts and predominantly localized on the inner leaflet of the S. heterospiculata host plasma membrane. The transmembrane distribution of phosphatidylethanolamines of S. heterospiculata host changes during different seasons of the year, possibly contributing to mutualistic nutritional exchange across this membrane complex to provide the host with a secure adaptive mechanism and ecological benefits.An advanced lipidomic study of corals Sinularia heterospiculata and Acropora aspera showed that plasma membrane of host cells has unique vectorial lipidomic features and compositionally distinct lipid profile from their endosymbiotic dinoflagellates. [ABSTRACT FROM AUTHOR]

Symbiotic dinoflagellates in the genus Symbiodiniaceae play vital roles in promoting resilience and increasing stress tolerance in their coral hosts. While much of the world's coral succumb to the stresses associated with increasingly severe and frequent thermal bleaching events, live coral cover in Papua New Guinea (PNG) remains some of the highest reported globally despite the historically warm waters surrounding the country. Yet, in spite of the high coral cover in PNG and the acknowledged roles Symbiodiniaceae play within their hosts, these communities have not been characterized in this global biodiversity hotspot. Using high-throughput sequencing of the ITS2 rDNA gene, we profiled the endosymbionts of four coral species, Diploastrea heliopora, Pachyseris speciosa, Pocillopora acuta, and Porites lutea, across six sites in PNG. Our findings reveal patterns of Cladocopium and Durusdinium dominance similar to other reefs in the Coral Triangle, albeit with much greater intra- and intergenomic variation. Host- and site-specific variations in Symbiodiniaceae type profiles were observed across collection sites, appearing to be driven by environmental conditions. Notably, the extensive intra- and intergenomic variation, coupled with many previously unreported sequences, highlight PNG as a potential hotspot of symbiont diversity. This work represents the first characterization of the coral-symbiont community structure in the PNG marine biodiversity hotspot, serving as a baseline for future studies. [ABSTRACT FROM AUTHOR]

As photosynthetic producers, phytoplankton form the foundation of aquatic food webs. Understanding the relationships among photosynthetic traits in phytoplankton is essential to revealing how diversification of these traits allows phytoplankton to harvest energy from different light environments. We investigated whether the diversification of 15 species of cryptophytes, a phylum of phytoplankton with diverse light‐capturing pigments, showed evidence of trade‐offs among photosynthetic performance traits as predicted by the gleaner–opportunist resource exploitation framework. We constructed photosynthesis versus irradiance (P–E) curves and rapid light curves (RLCs) to estimate parameters characterizing photosynthetic performance and electron transport rate. We inferred the evolutionary relationships among the 15 species with ultraconserved genomic elements and used a phylogenetically controlled approach to test for trade‐offs. Contrary to our prediction, we observed a positive correlation between maximum photosynthetic rate, Pmax, and P–E α$$ \upalpha $$, an indicator of a species' sensitivity to increases in light intensity when light is a scarce resource. This result could not be explained by electron transfer traits, which were uncorrelated with photosynthetic rate. Together, our results suggest that ecological diversification of light exploitation in cryptophytes has escaped the constraints of a gleaner–opportunist trade‐off. Photosynthetic trade‐offs may be context‐ or scale‐dependent, thereby only emerging when investigated in situations different from the one used here. [ABSTRACT FROM AUTHOR]

ABSTRACT Symbiont genotype plays a vital role in the ability of a coral host to tolerate rising ocean temperatures, with some members of the family Symbiodiniaceae possessing more thermal tolerance than others. While existing studies on genetic structure in symbiont populations have focused on broader scales of 10–100 s of km, there is a noticeable gap in understanding the seascape genetics of coral symbionts at finer—yet ecologically and evolutionarily relevant—scales. Here, we mapped short reads from 271 holobiont genome libraries of individual Acropora hyacinthus colonies to protein coding genes from the chloroplast genome to identify patterns of symbiont population genetic structure. Utilizing this low‐pass method, we assayed over 13,000 bases from every individual, enabling us to discern genetic variation at a finer geographic scale than previously reported at the population level. We identified five common Cladocopium chloroplast SNP profiles present across Palau, with symbiont structure varying between Northern, mid‐lagoon, and Southern regions, and inshore–offshore gradients. Although symbiont populations within reefs typically contained significant genetic diversity, we also observed genetic structure between some nearby reefs. To explore whether coral hosts retain their symbionts post‐transplantation, we experimentally moved 79 corals from their native reefs to transplant sites with both different and similar chloroplast SNP profiles. Over 12 months, we observed 12 instances where transplanted corals changed profiles, often transitioning to a profile present in adjacent corals. Symbiont genetic structure between reefs suggests either low dispersal of symbionts or environmental selection against dispersers, both resulting in the potential for significant adaptive differentiation across reef environments. The extent to which local corals and their symbionts are co‐adapted to environments on a reef‐by‐reef scale is currently poorly known. Chloroplast sequences offer an additional tool for monitoring symbiont genetics and coral–symbiont interactions when assisted migration is used in restoration.

Coral reefs are some of the oldest, most diverse and valuable ecosystems on Earth because they can support one-quarter of all marine life in our oceans. Despite their importance, the world's coral reefs continue to be degraded at unprecedented rates by local and global threats that are warming and creating a more acidic ocean. This paper explores the reproductive challenges of coral for ex situ conservation, using IVF and cryopreservation, and our practical biobanking methods. Coral present challenges for cryopreservation because their reproductive period is often limited to a few nights yearly, they are mostly hermaphrodites with diverse modes of reproduction, including asexual reproduction (i.e. fragmentation and parthenogenesis) and sexual reproduction (i.e. self- and cross-fertilisation) and they express physiological toxins that can inhibit cryopreservation. We have banked spermatozoa from 12 coral species using the same field-hardy methods and have created new coral with thawed spermatozoa. In addition, we describe the cryopreservation of coral symbionts, whose physiology only permits the highest success seasonally. As part of a multidisciplinary conservation strategy, these collections may provide a major hedge against extinction for corals facing the damaging effects of climate change and loss of genetic diversity, and promise to help offset threats to our reefs worldwide. [ABSTRACT FROM AUTHOR]

Ocean acidification (OA) has both detrimental as well as beneficial effects on marine life; it negatively affects calcifiers while enhancing the productivity of photosynthetic organisms. To date, many studies have focused on the impacts of OA on calcification in reef-building corals, a process particularly susceptible to acidification. However, little is known about the effects of OA on their photosynthetic algal partners, with some studies suggesting potential benefits for symbiont productivity. Here, we investigated the transcriptomic response of the endosymbiont Symbiodinium microadriaticum (CCMP2467) in the Red Sea coral Stylophora pistillata subjected to different long-term (2 years) OA treatments (pH 8.0, 7.8, 7.4, 7.2). Transcriptomic analyses revealed that symbionts from corals under lower pH treatments responded to acidification by increasing the expression of genes related to photosynthesis and carbon-concentrating mechanisms. These processes were mostly up-regulated and associated metabolic pathways were significantly enriched, suggesting an overall positive effect of OA on the expression of photosynthesis-related genes. To test this conclusion on a physiological level, we analyzed the symbiont's photochemical performance across treatments. However, in contrast to the beneficial effects suggested by the observed gene expression changes, we found significant impairment of photosynthesis with increasing p CO2. Collectively, our data suggest that over-expression of photosynthesis-related genes is not a beneficial effect of OA but rather an acclimation response of the holobiont to different water chemistries. Our study highlights the complex effects of ocean acidification on these symbiotic organisms and the role of the host in determining symbiont productivity and performance. [ABSTRACT FROM AUTHOR]

Abstract The mucus surface layer serves vital functions for scleractinian corals and consists mainly of carbohydrates. Its carbohydrate composition has been suggested to be influenced by environmental conditions (e.g., temperature, nutrients) and microbial pressures (e.g., microbial degradation, microbial coral symbionts), yet to what extend the coral mucus composition is determined by phylogeny remains to be tested. To investigate the variation of mucus carbohydrate compositions among coral species, we analyzed the composition of mucosal carbohydrate building blocks (i.e., monosaccharides) for five species of scleractinian corals, supplemented with previously reported data, to discern overall patterns using cluster analysis. Monosaccharide composition from a total of 23 species (belonging to 14 genera and 11 families) revealed significant differences between two phylogenetic clades that diverged early in the evolutionary history of scleractinian corals (i.e., complex and robust; p = 0.001, R2 = 0.20), mainly driven by the absence of arabinose in the robust clade. Despite considerable differences in environmental conditions and sample analysis protocols applied, coral phylogeny significantly correlated with monosaccharide composition (Mantel test: p

Background: Dinoflagellates are unicellular marine and freshwater eukaryotes. They possess large nuclear genomes (1.5-245 gigabases) and produce structurally unique and biologically active polyketide secondary metabolites. Although polyketide biosynthesis is well studied in terrestrial and freshwater organisms, only recently have dinoflagellate polyketides been investigated. Transcriptomic analyses have characterized dinoflagellate polyketide synthase genes having single domains. The Genus Symbiodinium, with a comparatively small genome, is a group of major coral symbionts, and the S. minutum nuclear genome has been decoded. Results: The present survey investigated the assembled S. minutum genome and identified 25 candidate polyketide synthase (PKS) genes that encode proteins with mono- and multifunctional domains. Predicted proteins retain functionally important amino acids in the catalytic ketosynthase (KS) domain. Molecular phylogenetic analyses of KS domains form a clade in which S. minutum domains cluster within the protist Type I PKS clade with those of other dinoflagellates and other eukaryotes. Single-domain PKS genes are likely expanded in dinoflagellate lineage. Two PKS genes of bacterial origin are found in the S. minutum genome. Interestingly, the largest enzyme is likely expressed as a hybrid non-ribosomal peptide synthetase-polyketide synthase (NRPS-PKS) assembly of 10,601 amino acids, containing NRPS and PKS modules and a thioesterase (TE) domain. We also found intron-rich genes with the minimal set of catalytic domains needed to produce polyketides. Ketosynthase (KS), acyltransferase (AT), and acyl carrier protein (ACP) along with other optional domains are present. Mapping of transcripts to the genome with the dinoflagellate-specific spliced leader sequence, supports expression of multifunctional PKS genes. Metabolite profiling of cultured S. minutum confirmed production of zooxanthellamide D, a polyhydroxy amide polyketide and other unknown polyketide secondary metabolites. Conclusion: This genomic survey demonstrates that S. minutum contains genes with the minimal set of catalytic domains needed to produce polyketides and provides evidence of the modular nature of Type I PKS, unlike monofunctional Type I PKS from other dinoflagellates. In addition, our study suggests that diversification of dinoflagellate PKS genes comprises dinoflagellate-specific PKS genes with single domains, multifunctional PKS genes with KS domains orthologous to those of other protists, and PKS genes of bacterial origin. [ABSTRACT FROM AUTHOR]

A recent hypothesis considers that many coral pathologies are the result of a sudden structural alteration of the epibiotic bacterial communities in response to environmental disturbances. However, the ecological mechanisms that lead to shifts in their composition are still unclear. In the ocean, viruses represent a major bactericidal agent but little is known on their occurrence within the coral holobiont. Recent reports have revealed that viruses are abundant and diversified within the coral mucus and therefore could be decisive for coral health. However, their mode of action is still unknown, and there is now an urgent need to shed light on the nature of the relationships they might have with the other prokaryotic and eukaryotic members of the holobiont. In this opinion letter, we are putting forward the hypothesis that coral-associated viruses (mostly bacterial and algal viruses), depending on the environmental conditions might either reinforce coral stability or conversely fasten their decline. We propose that these processes are presumably based on an environmentally driven shift in infection strategies allowing viruses to regulate, circumstantially, both coral symbionts (bacteria or S ymbiodinium) and surrounding pathogens. [ABSTRACT FROM AUTHOR]

On 11th September, 2019, coastal waters near to offshore islands of Mandapam region appeared in dark green colour, which is caused by bioluminescent dinoflagellate Noctiluca scintillans, commonly called as Sea Sparkle. Extensive monitoring was carried out during 11th to 25th September, 2019 to assess the impact of this bloom on offshore islands of Mandapam region of Gulf of Mannar coastal fauna. Mass mortality of variety of fish, sea shells and sea snakes washed ashore on Kundukal area in Mandapam region was observed due to the sudden raise of Noctiluca scintillans bloom. No negative impact on coral reefs was recorded from Mandapam group of Islands. Reef building corals remain healthy during and after the bloom formation. There is no significant (p value 0.2111, p<0.05) difference was found in the environmental parameters investigated before and after the bloom formation. Nutrient rich environment and favourable environmental parameters might have helped coral symbionts to respond positively which in turn accelerate the density of zooxanthellae without doing any negative effect on coral holobiont and consequently that leads to maintain a healthy reef condition during this bloom formation. [ABSTRACT FROM AUTHOR]

Understanding how bleaching severity varies across space and among and within taxa helps predict changes in community composition due to climate change and informs conservation efforts. Photogrammetry offers a non-invasive and time effective method for quantifying attributes of thousands of coral colonies across large, environmentally diverse reef areas. This approach circumvents the limitations of traditional survey methods, where detailed tracking of individual colonies comes at the expense of large sampling areas and sample sizes. Using photogrammetry, we measured colony size and scored bleaching severity of > 5000 colonies of 13 taxa across 26 sites (> 7400 m 2 of reef) during a mild bleaching event in the central Great Barrier Reef (GBR) in 2022. We quantified the relationship between bleaching severity and key biological and environmental factors: colony size, taxonomic identity, degree-heating weeks (DHWs), water velocity, various measures of reef structural complexity, depth, and distance to coast. Our results show that bleaching probability decreased with increasing colony size for most taxa, contradicting the current understanding of size-dependent bleaching. Counter to conventional thinking, tabular Acropora spp. presented very low levels of bleaching in 2022 despite being among the most severely bleached taxa during the bleaching event in 1998, suggesting possible adaptation in the last two decades. Our results show a high level of idiosyncrasy in environmental gradients of bleaching severity. For instance, the effect of depth on was taxon-dependent and the effect of wave velocity differed between inshore and offshore reefs. Our results challenge prevailing paradigms around the role of colony size and environment in regulating bleaching susceptibility, suggesting that refugia are not universal but instead depend on specific environment-taxonomic combinations and taxon-specific colony sizes., (© 2025 John Wiley & Sons Ltd.)

Corals associate with a diverse community of prokaryotic symbionts that provide nutrition, antioxidants and other protective compounds to their host. However, the influence of microbes on coral thermotolerance remains understudied. Here, we examined the prokaryotic microbial communities associated with colonies of Acropora cf. tenuis that exhibit high or low thermotolerance upon exposure to 33°C (heated) relative to 29°C (control). Using 16S rRNA sequencing, we show that the microbial community structure of all A. cf. tenuis colonies was similar to each other at control temperature. Thermotolerant colonies, however, had relatively greater abundance of Endozoicomonas, Arcobacter, Bifidobacterium and Lactobacillus. At elevated temperature, only thermosensitive colonies showed a distinct shift in their microbiome, with an increase in Flavobacteriales, Rhodobacteraceae and Vibrio, accompanying a marked bleaching response. Functional prediction indicated that prokaryotic communities associated with thermotolerant corals were enriched for genes related to metabolism, while microbiomes of thermosensitive colonies were enriched for cell motility and antibiotic compound synthesis. These differences may contribute to the variable performance of thermotolerant and thermosensitive corals under thermal stress. Identification of microbial taxa correlated with thermotolerance provides insights into beneficial bacterial groups that could be used for microbiome engineering to support reef health in a changing climate., (© 2025 John Wiley & Sons Ltd.)

Zinc is an essential metal to living organisms, including corals and their symbiotic microalgae (Symbiodiniaceae). Both Zn(II) deprivation and overload are capable of leading to dysfunctional metabolism, coral bleaching, and even organism death. The present work investigated the effects of chemically defined Zn species (free Zn, ZnO nanoparticles, and the complexes Zn-histidinate and Zn-EDTA) over the growth of the dinoflagellates Symbiodinium microadriaticum, Breviolum minutum, and Effrenium voratum, and on the trypsin-like proteolytic activity of the hydrocoral Millepora alcicornis. B. minutum was the most sensitive strain to any form of added Zn. For the other strains, the complex [Zn(His) 2 ] better translated metal load into growth. This complex was the only tested compound that did not interfere with the trypsin-like activity of Millepora alcicornis extracts. Also, histidine was able to recover the activity of the enzyme inhibited by zinc. [Zn(His) 2 ] is a potential biocarrier of zinc for microalgae or coral cultivation. These findings suggest that the control of chemical speciation of an essential metal could lead to useful compounds that assist autotrophy, while not affecting heterotrophy, in the coral holobiont., Competing Interests: Declarations. Competing interests: The authors declare no competing interests., (© 2025. The Author(s), under exclusive licence to Springer Nature B.V.)

The application of beneficial microorganisms for corals (BMC) decreases the bleaching susceptibility and mortality rate of corals. BMC selection is typically performed via molecular and biochemical assays, followed by genomic screening for BMC traits. Herein, we present a comprehensive in silico framework to explore a set of six putative BMC strains. We extracted high-quality DNA from coral samples collected from the Red Sea and performed PacBio sequencing. We identified BMC traits and mechanisms associated with each strain as well as proposed new traits and mechanisms, such as chemotaxis and the presence of phages and bioactive secondary metabolites. The presence of prophages in two of the six studied BMC strains suggests their possible distribution within beneficial bacteria. We also detected various secondary metabolites, such as terpenes, ectoines, lanthipeptides, and lasso peptides. These metabolites possess antimicrobial, antifungal, antiviral, anti-inflammatory, and antioxidant activities and play key roles in coral health by reducing the effects of heat stress, high salinity, reactive oxygen species, and radiation. Corals are currently facing unprecedented challenges, and our revised framework can help select more efficient BMC for use in studies on coral microbiome rehabilitation, coral resilience, and coral restoration. [ABSTRACT FROM AUTHOR]

Background: Coral-associated microbiomes vary greatly between colonies and localities with functional consequences on the host. However, the full extent of variability across the ranges of most coral species remains unknown, especially for corals living in deep waters which span greater ranges. Here, we characterized the microbiomes of four octocoral species from mesophotic and bathyal deep-sea habitats in the northern Gulf of Mexico, Muricea pendula, Swiftia exserta, Callogorgia delta, and Paramuricea biscaya, using 16S rRNA gene metabarcoding. We sampled extensively across their ranges to test for microbiome differentiation between and within species, examining the influence of environmental factors that vary with depth (53–2224 m) and geographic location (over 680 m) as well as the host coral's genotype using RAD-sequencing. Results: Coral microbiomes were often dominated by amplicon sequence variants whose abundances varied across their hosts' ranges, including symbiotic taxa: corallicolids, Endozoicomonas, members of the Mollicutes, and the BD1-7 clade. Coral species, depth, and geographic location significantly affected diversity, microbial community composition, and the relative abundance of individual microbes. Depth was the strongest environmental factor determining microbiome structure within species, which influenced the abundance of most dominant symbiotic taxa. Differences in host genotype, bottom temperature, and surface primary productivity could explain a significant part of the microbiome variation associated with depth and geographic location. Conclusions: Altogether, this work demonstrates that the microbiomes of corals in deep waters vary substantially across their ranges in accordance with depth and other environmental conditions. It reveals that the influence of depth on the ecology of mesophotic and deep-sea corals extends to its effects on their microbiomes which may have functional consequences. This work also identifies the distributions of microbes including potential parasites which can be used to inform restoration plans in response to the Deepwater Horizon oil spill. [ABSTRACT FROM AUTHOR]

The intracellular coral–dinoflagellate symbiosis is the engine that underpins the success of coral reefs, one of the most diverse ecosystems on the planet. However, the breakdown of the symbiosis and the loss of the microalgal symbiont (i.e. coral bleaching) due to environmental changes are resulting in the rapid degradation of coral reefs globally. There is an urgent need to understand the cellular physiology of coral bleaching at the mechanistic level to help develop solutions to mitigate the coral reef crisis. Here, at an unprecedented scope, we present novel models that integrate putative mechanisms of coral bleaching within a common framework according to the triggers (initiators of bleaching, e.g. heat, cold, light stress, hypoxia, hyposalinity), cascades (cellular pathways, e.g. photoinhibition, unfolded protein response, nitric oxide), and endpoints (mechanisms of symbiont loss, e.g. apoptosis, necrosis, exocytosis/vomocytosis). The models are supported by direct evidence from cnidarian systems, and indirectly through comparative evolutionary analyses from non‐cnidarian systems. With this approach, new putative mechanisms have been established within and between cascades initiated by different bleaching triggers. In particular, the models provide new insights into the poorly understood connections between bleaching cascades and endpoints and highlight the role of a new mechanism of symbiont loss, i.e. 'symbiolysosomal digestion', which is different from symbiophagy. This review also increases the approachability of bleaching physiology for specialists and non‐specialists by mapping the vast landscape of bleaching mechanisms in an atlas of comprehensible and detailed mechanistic models. We then discuss major knowledge gaps and how future research may improve the understanding of the connections between the diverse cascade of cellular pathways and the mechanisms of symbiont loss (endpoints). [ABSTRACT FROM AUTHOR]

Diazotrophic communities contribute inorganic nitrogen for the primary productivity of the marine environment by biological nitrogen fixation (BNF). They play a vital role in the biogeochemical cycle of nitrogen in the marine ecological environment. However, there is still an incomplete understanding of BNF and diazotrophs in artificial seaweed farms. Therefore, this study comprehensively investigated the temporal variations of BNF associated with Gracilariopsis lemaneiformis, as well as the diazotrophic communities associated with macroalgae and its surrounding seawater. Our results revealed that a total of 13 strains belonging to Proteobacteria and Bacteroidetes were identified as N2-fixing bacteria using azotobacter selective solid medium and nifH gene cloning. Subsequently, BNF and diazotrophic communities were characterized using the acetylene reduction method and high-throughput sequencing of the nifH gene, respectively. The results showed that nitrogenase activity and nifH gene abundance of epiphytic bacteria on G. lemaneiformis varied significantly among four different cultivation periods, i.e., Cultivation Jan. (CJ), Cultivation Feb. (CF), Cultivation Mar. (CM), Cultivation Apr. (CA). Among them, the nitrogenase activity and nifH gene abundance of epiphytic bacteria on G. lemaneiformis in CM were significantly higher than those in CJ, CF, and CA, indicating that the BNF of eiphytic bacteria on G. lemaneiformis wasmarkedly enhanced. Combined with the data on environmental factors, it was found that the low concentration of nitrogen and phosphorus in CM might considerably boost the BNF of epiphytic bacteria in G. lemaneiformis. The sequencing results of the nifH gene showed that the adiversity of diazotrophic communities associated with G. lemaneiformis and seawater in CM was higher than that in other cultivation periods. In addition, the diazotrophic communities on G. lemaneiformis were significantly different in CJ, CF, CM, and CA, and they were significantly diverse from diazotrophic communities in seawater. LEfSe analysis indicated that Rhodobacterales, Hyphomonadaceae, Robiginitomaculum, and Robiginitomaculum antarcticum within a-proteobacteria played a remarkable role in BNF in response to nitrogen nutrient deficiency. Taken together, these results provide a unique insight into the interaction between macroalgae and its epiphytic bacteria and lay a foundation for further research on the mechanism of action of nitrogen-cycling microorganisms associated with macroalgae. [ABSTRACT FROM AUTHOR]

The Southwestern Atlantic (SWA) harbors a relatively species poor but highly endemic coral assemblage due to historical processes, environmental and ecological drivers. Despite its low to moderate cover, corals still have a disproportionate contribution to ecosystem function and stability in this region. In the context of global change, it is imperative to know corals' diversity and biogeographic patterns, yet a comprehensive approach is still missing for SWA corals. We integrated occurrence data from 21 sites and nine functional traits across 20 coral (scleractinian and hydrozoan) species to explore the taxonomic and functional diversity of coral assemblages in the SWA (1°N-27°S). We identified eight regions based on coral species composition, and then described their functional diversity using four metrics: functional richness (FRic), functional dispersion (FDis), functional evenness (FEve), and functional originality (FOri). Taxonomic and functional diversity peak between latitudes 13°S-20°S, decreasing with increasing distance from this diversity center, known as the Abrolhos Bank that harbors a wide continental platform. Our findings reveal a prevalent pattern of high functional redundancy across these eight regions (indicated by low functional originality), with species occupying the edges of the trait space (high functional evenness) and converging around few trait values (low functional dispersion). Such patterns resulted in low taxonomic and functional beta diversity and increased nestedness among regions caused by dispersal barriers and environmental filtering. The Southernmost region (24°-27° S) has the lowest taxonomic and functional diversity and comprises only two species that share similar traits, with these corals being: hermaphrodites, brooders and depth-tolerant, and having a wide corallite. As this region might become critical for corals in a future tropicalization scenario, tropical corals that share similar traits to those of the southernmost region can be more likely to thrive. Knowledge on taxonomic and functional diversity patterns can offer critical information to conservation by helping prioritizing areas with higher diversity and species with traits that enhance survival under climate change. [ABSTRACT FROM AUTHOR]

Skin cancer is a global and increasingly prevalent issue, causing significant individual and economic damage. UV filters in sunscreens play a major role in mitigating the risks that solar ultraviolet ra-diation poses to the human organism. While empirically effective, multiple adverse effects of these compounds are discussed in the media and in scientific research. UV filters are blamed for the dis-ruption of endocrine processes and vitamin D synthesis, damaging effects on the environment, induction of acne and neurotoxic and carcinogenic effects. Some of these allegations are based on scientific facts while others are simply arbitrary. This is especially dangerous considering the risks of exposing unprotected skin to the sun. In summary, UV filters approved by the respective governing bodies are safe for human use and their proven skin cancer-preventing properties make them in-dispensable for sensible sun protection habits. Nonetheless, compounds like octocrylene and ben-zophenone-3 that are linked to the harming of marine ecosystems could be omitted from skin care regimens in favor of the myriad of non-toxic UV filters. [ABSTRACT FROM AUTHOR]

Black corals (Hexacorallia: Antipatharia) are a major component of mesophotic and deep marine ecosystems. Due to their preference for light deprived environments, black corals have historically been considered azooxanthellate, yet recent works have found them in association with dinoflagellates of the family Symbiodiniaceae down to 396 m depth. While corals and Symbiodiniaceae generally establish a symbiotic relationship in shallow water environments, the implications of this association is less well understood at deeper depths, where low light penetration cannot sustain efficient photosynthetic activity for the algae. However, Symbiodinaceae are not obligate autotrophs, and their capacity for heterotrophic feeding categorizes themas mixotrophs. In this study, we investigated the presence and diversity of Symbiodiniaceae associated with the deep-sea black coral Bathypathes thermophila (Antipatharia: Schizopathidae), collected from 204 to 655 m depth in the Saudi Arabian Red Sea. Using high-throughput sequencing of the ITS2 region, we report (1) the deepest record to date of Symbiodiniaceae associated with an anthozoan from 655 m, and (2) the first Red Sea record of Antipatharia in association with Symbiodiniaceae. Our analyses revealed that 14 out of 27 colonies of B. thermophila were associated with Symbiodiniaceae of the genera Cladocopium and Durusdinium. We unveiled 16 novel ITS2 type profiles, possibly unique to black corals and/or to these depths, along with seven profiles that were already known from shallow-water hard corals. No significant pattern was detected in terms of community diversity in relation to depth or sampling locality. Our study supports the existence of black corals-Symbiodiniaceae association and warrants further research to better understand the evolutionary processes and physiological mechanisms driving this association, specifically in light deprived environments. [ABSTRACT FROM AUTHOR]

Coral reef health is tightly connected to the coral holobiont, which is the association between the coral animal and a diverse microbiome functioning as a unit. The coral holobiont depends on key services such as nitrogen and sulfur cycling mediated by the associated bacteria. However, these microbial services may be impaired in response to environmental changes, such as thermal stress. A perturbed microbiome may lead to coral bleaching and disease outbreaks, which have caused an unprecedented loss in coral cover worldwide, particularly correlated to a warming ocean. The response mechanisms of the coral holobiont under high temperatures are not completely understood, but the associated microbial community is a potential source of acquired heat-tolerance. Here we investigate the effects of increased temperature on the taxonomic and functional profiles of coral surface mucous layer (SML) microbiomes in relationship to coral–algal physiology. We used shotgun metagenomics in an experimental setting to understand the dynamics of microbial taxa and genes in the SML microbiome of the coral Pseudodiploria strigosa under heat treatment. The metagenomes of corals exposed to heat showed high similarity at the level of bacterial genera and functional genes related to nitrogen and sulfur metabolism and stress response. The coral SML microbiome responded to heat with an increase in the relative abundance of taxa with probiotic potential, and functional genes for nitrogen and sulfur acquisition. Coral–algal physiology significantly explained the variation in the microbiome at taxonomic and functional levels. These consistent and specific microbial taxa and gene functions that significantly increased in proportional abundance in corals exposed to heat are potentially beneficial to coral health and thermal resistance. [ABSTRACT FROM AUTHOR]

Coral reefs provide ideal habitats for crabs and various living organisms, offering crevices, sandy bottoms, and a rich diversity of resources. Mu Koh Tao, located on the western Gulf of Thailand, boasts vibrant coral reefs and potentially high crab biodiversity. However, coral bleaching due to climate change may impact this biodiversity. This study investigates the diversity, abundance, distribution, and community structure of crabs in coral reefs around Koh Tao and Koh Nang Yuan, including 11 sampling stations with varying levels of coral bleaching. A total of 47 crab species from 34 genera and 14 families were identified. The most abundant and notable species were Trapezia cymodoce, Tetralia nigrolineata, and Tetralia rubridactyla. Additionally, two species were newly recorded in the Gulf of Thailand, and seven species were potentially first reports for Thailand. Rare species dominated, comprising 82.98% of the total. Shark Island had the highest Shannon-diversity and species richness indices, at 2.43 and 5.53, respectively, underscoring its ecological importance. The crab community structure varied with the severity of coral bleaching and the diversity of associated organisms. An in-depth study compared the abundance of coral crabs in healthy versus bleached corals, revealing that Tr. cymodoce did not inhabit bleached Pocillopora damicornis, while Te. nigrolineata was found in both healthy and bleached Acropora hyacinthus, with densities of 23.81 and 7.24 individuals per square meter, respectively. These findings suggest that coral crabs can serve as indicators of climate change-induced coral bleaching and associated habitat loss, highlighting the need for conservation efforts to protect these ecosystems. [ABSTRACT FROM AUTHOR]