372 results on '"Caldarelli, Stefano"'
Search Results
152. 2-01-03 Sequence analysis of JCV isolates from AIDS patients with and without progressive multifocal leukoencephalopathy
- Author
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R. Maserati, Monica Mediati, Rita Caldarelli-Stefano, L. Losciale, E. Omodeo Zorini, L. Cocchi, and Pasquale Ferrante
- Subjects
Pathology ,medicine.medical_specialty ,Aids patients ,Neurology ,business.industry ,Sequence analysis ,Progressive multifocal leukoencephalopathy ,medicine ,Neurology (clinical) ,medicine.disease ,business - Published
- 1997
153. Demixing of Severely Overlapping NMR Spectra through Multiple-Quantum NMR.
- Author
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Reddy, Manjunatha and Caldarelli, Stefano
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NUCLEAR magnetic resonance , *LINEAR free energy relationship , *PROTONS , *SPECTRUM analysis , *FLUID dynamics - Abstract
We introduce an NMR method to help in the analysis of complex mixtures. The spectra of molecular fragments are obtained as the traces of a correlation spectrum of the regular 1H NMR spectrum on one dimension with the one of the highest possible 1H multiple-quantum (MaxQ) order. As this latter is a function of the number of distinguishable protons in a given molecular fragment, the analysis of a series of multiple-quantum spectra is required to achieve a complete assignment. This MaxQ NMR approach is likely to perform best in the case of signals concentrated in a very narrow frequency range, which is a challenging situation commonly encountered in many relevant analytical problems such as the characterization of extraction fractions (oil, plants, tissues), biological fluids, or environmentally relevant samples. As a demonstration, we apply the MaxQ NMR analysis to a mixture of 11 poly- and monocyclic aromatic hydrocarbons. [ABSTRACT FROM AUTHOR]
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- 2010
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154. Synthesis and Structural Characterization of a New Nanoporous-like Keggin Heteropolyanion Salt: K3(H2O)4[H2SiVW11O40](H2O)8 + x.
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de Paiva Floro Bonfim, Rodrigo, de Moura, Luiza Cristina, Pizzala, Hélène, Caldarelli, Stefano, Paul, Sébastien, Eon, Jean Guillaume, Mentré, Olivier, Capron, Mickaĕl, Delevoye, Laurent, and Payen, Edmond
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- 2007
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155. Investigation of Sodium Cations in Dehydrated Zeolites LSX, X, and Y by [sup 23]Na Off-Resonance...
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Caldarelli, Stefano, Buchholz, Andreas, and Hunger, Michael
- Subjects
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ZEOLITES , *SODIUM , *CATIONS , *QUANTUM chemistry , *NUCLEAR magnetic resonance spectroscopy , *ANALYTICAL chemistry - Abstract
Studies a homologous series of dehydrated sodium-containing zeolites LSX, X and Y by [sup 23]Na off-resonance RIACT triple-quantum and high-speed magic-angle spinning nuclear magnetic resonance spectroscopy. Evolution of relative population of different sodium cation sites in zeolites; Faujasite structure of zeolites.
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- 2001
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156. Evidence for early intracellular accumulation of volatile compounds during spadix development in Arum italicumL. and preliminary data on some tropical Aroids
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Leguet, Aurélia, Gibernau, Marc, Shintu, Laetitia, Caldarelli, Stefano, Moja, Sandrine, Baudino, Sylvie, and Caissard, Jean-Claude
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Staining and histochemistry of volatile organic compounds (VOCs) were performed at different inflorescence developmental stages on nine aroid species; one temperate, Arum italicumand eight tropical from the genera Caladium, Dieffenbachiaand Philodendron. Moreover, a qualitative and quantitative analysis of VOCs constituting the scent of A. italicum, depending on the stage of development of inflorescences was also conducted. In all nine species, vesicles were observed in the conical cells of either the appendix or the stamens (thecae) and the staminodes. VOCs were localised in intracellular vesicles from the early stages of inflorescence development until their release during receptivity of gynoecium. This localisation was observed by the increase of both number and diameter of the vesicles during 1 week before receptivity. Afterwards, vesicles were fewer and smaller but rarely absent. In A. italicum, staining and gas chromatography analyses confirmed that the vesicles contained terpenes. The quantitatively most important ones were the sesquiterpenes, but monoterpenes were not negligible. Indeed, the quantities of terpenes matched the vesicles’ size evolution during 1 week. Furthermore, VOCs from different biosynthetic pathways (sesquiterpenes and alkanes) were at their maximum quantity 2 days before gynoecium receptivity (sesquiterpenes and alkanes) or during receptivity (isobutylamine, monoterpenes, skatole and p-cresol). VOCs seemed to be emitted during gynoecium receptivity and/or during thermogenesis, and FADs are accumulated after thermogenesis in the spadix. These complex dynamics of the different VOCs could indicate specialisation of some VOCs and cell machinery to attract pollinators on the one hand and to repulse/protect against phytophagous organisms and pathogens after pollination on the other hand.
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- 2014
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157. Amorphous Vanadium Phosphate Catalysts from Supercritical Antisolvent Precipitation
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Hutchings, Graham J, Bartley, Jonathan K, Webster, Jeremy M, Lopez-Sanchez, J.Antonio, Gilbert, Darren J, Kiely, Christopher J, Carley, Albert F, Howdle, Steve M, Sajip, Sujata, Caldarelli, Stéfano, Rhodes, Colin, Volta, Jean Claude, and Poliakoff, Martyn
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- 2001
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158. Human T-cell lymphotropic virus tax and Epstein-Barr virus DNA in peripheral blood of multiple sclerosis patients during acute attack.
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Ferrante, P., Omodeo-Zorini, E., Zuffolato, M. R., Mancuso, R., Caldarelli-Stefano, R., Puricelll, S., Mediati, M., Losciale, I., and Caputo, D.
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- 1997
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159. Identification by polymerase chain reaction fingerprinting of Cryptococcus neoformans serotype AD.
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Viviani, M.A., Wen, H., Roverselli, A., Caldarelli-Stefano, R., Cogliati, M., Ferrante, P., and Tortorano, A.M.
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- 1997
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160. Can we trust untargeted metabolomics? Results of the metabo-ring initiative, a large-scale, multi-instrument inter-laboratory study
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Martin, Jean-Charles, Maillot, Matthieu, Mazerolles, Gérard, Verdu, Alexandre, Lyan, Bernard, Migné, Carole, Defoort, Catherine, Canlet, Cecile, Junot, Christophe, Guillou, Claude, Manach, Claudine, Jabob, Daniel, Bouveresse, Delphine Jouan-Rimbaud, Paris, Estelle, Pujos-Guillot, Estelle, Jourdan, Fabien, Giacomoni, Franck, Courant, Frédérique, Favé, Gaëlle, Le Gall, Gwenaëlle, Chassaigne, Hubert, Tabet, Jean-Claude, Martin, Jean-Francois, Antignac, Jean-Philippe, Shintu, Laetitia, Defernez, Marianne, Philo, Mark, Alexandre-Gouaubau, Marie-Cécile, Amiot-Carlin, Marie-Josephe, Bossis, Mathilde, Triba, Mohamed N., Stojilkovic, Natali, Banzet, Nathalie, Molinié, Roland, Bott, Romain, Goulitquer, Sophie, Caldarelli, Stefano, and Rutledge, Douglas N.
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Inter-laboratory ,Untargeted metabolomics ,Mass spectrometry ,Metabolic fingerprinting ,Endocrinology, Diabetes and Metabolism ,Clinical Biochemistry ,Original Article ,Biochemistry ,Nuclear magnetic resonance - Abstract
The metabo-ring initiative brought together five nuclear magnetic resonance instruments (NMR) and 11 different mass spectrometers with the objective of assessing the reliability of untargeted metabolomics approaches in obtaining comparable metabolomics profiles. This was estimated by measuring the proportion of common spectral information extracted from the different LCMS and NMR platforms. Biological samples obtained from 2 different conditions were analysed by the partners using their own in-house protocols. Test #1 examined urine samples from adult volunteers either spiked or not spiked with 32 metabolite standards. Test #2 involved a low biological contrast situation comparing the plasma of rats fed a diet either supplemented or not with vitamin D. The spectral information from each instrument was assembled into separate statistical blocks. Correlations between blocks (e.g., instruments) were examined (RV coefficients) along with the structure of the common spectral information (common components and specific weights analysis). In addition, in Test #1, an outlier individual was blindly introduced, and its identification by the various platforms was evaluated. Despite large differences in the number of spectral features produced after post-processing and the heterogeneity of the analytical conditions and the data treatment, the spectral information both within (NMR and LCMS) and across methods (NMR vs. LCMS) was highly convergent (from 64 to 91 % on average). No effect of the LCMS instrumentation (TOF, QTOF, LTQ-Orbitrap) was noted. The outlier individual was best detected and characterised by LCMS instruments. In conclusion, untargeted metabolomics analyses report consistent information within and across instruments of various technologies, even without prior standardisation. Electronic supplementary material The online version of this article (doi:10.1007/s11306-014-0740-0) contains supplementary material, which is available to authorized users.
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161. Identification by polymerase chain reaction fingerprinting of Cryptococcus neoformansserotype AD
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Viviani, M.A., Wen, H., Roverselli, A., Caldarelli-Stefano, R., Cogliati, M., Ferrante, P., and Tortorano, A.M.
- Abstract
Seventy-three Cryptococcus neoformansisolates and eight other yeast strains were studied. Fingerprints produced by priming with (GACA)4differentiated C. neoformansfrom all other yeasts tested and identified the five C. neoformansserotypes. Four major bands of molecular size 800, 540, 475 and 410 bp were recognized for serotypes A, AD and D. Two of them were specific for serotype A and the other two for serotype D isolates. Serotype AD strains were identified by five different genotypic patterns in which at least one of the two bands specific for serotype A and D were present in different combinations. On repeated and simultaneously performed genotype and serotype testing of nine strains, the genotypic pattern did not change, whereas serotyping was unstable in three cases. PCR-fingerprinting using (GACA)4as a primer proved more stable than serology in discriminating among C. neoformansserotypes A, D and AD and was able to distinguish among serotype AD strains.
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- 1997
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162. Human T-cell lymphotropic virus tax and Epstein-Barr virus DNA in peripheral blood of multiple sclerosis patients during acute attack
- Author
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Ferrante, P., Omodeo-Zorini, E., Zuffolato, M. R., Roberta Mancuso, Caldarelli-Stefano, R., Puricelli, S., Mediati, M., Losciale, L., and Caputo, D.
163. Increased frequency of JC virus type 2 and of dual infection with JC virus type 1 and 2 in Italian progressive multifocal leukoencephalopathy patients
- Author
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Pasquale Ferrante, L. Losciale, Renato Maserati, Rita Caldarelli-Stefano, Roberta Mancuso, Anna Elisabetta Cagni, and Monica Mediati
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Pathology ,medicine.medical_specialty ,JC virus ,Urine ,medicine.disease_cause ,Peripheral blood mononuclear cell ,Polymerase Chain Reaction ,Cellular and Molecular Neuroscience ,Cerebrospinal fluid ,Capsid ,Dual infection ,Gene Frequency ,Risk Factors ,Virology ,Genotype ,medicine ,Humans ,Cerebrospinal Fluid ,Acquired Immunodeficiency Syndrome ,business.industry ,Progressive multifocal leukoencephalopathy ,Papillomavirus Infections ,Leukoencephalopathy, Progressive Multifocal ,Sequence Analysis, DNA ,medicine.disease ,JC Virus ,Tumor Virus Infections ,Neurology ,Italy ,DNA, Viral ,Etiology ,Disease Progression ,Leukocytes, Mononuclear ,Capsid Proteins ,Neurology (clinical) ,business ,Nested polymerase chain reaction - Abstract
To verify the possibility of different role of JC virus genotypes in the etiology of progressive multifocal leukoencephalopathy, we analysed several JC virus isolates amplified from AIDS patients with and without progressive multifocal leukoencephalopathy and healthy controls by nucleotide sequencing. Cerebrospinal fluid (CSF), peripheral blood mononuclear cells (PBMCs) and urine from 52 AIDS patients suffering from various neurological diseases including 21 cases of progressive multifocal leukoencephalopathy, and PBMCs and urine from healthy subjects were evaluated by nested polymerase chain reaction (PCR) for the presence of DNA belonging to the highly conserved large T antigen (LT) of JC virus. The different JC virus subtypes were identified by nucleotide sequence analysis of the virion protein (VP1) genomic region. JC virus DNA was detected in all the CSF samples from the progressive multifocal leukoencephalopathy patients, but not in the CSF from non-progressive multifocal leukoencephalopathy cases, while the frequency of JC virus DNA detection in the PBMCs and urine did not differ among the three groups studied. JC virus type 2 was detected only in progressive multifocal leukoencephalopathy patients, and in particular in 52.4% of their CSF samples. Moreover, in the CSF of 19.0% of the progressive multifocal leukoencephalopathy cases, dual infection with both JC virus types 1 and 2 was found. The data obtained in this study indicate that the unexpected involvement of JC virus type 2, a strain not common in Italy, and the high frequency of dual infection with both JC virus types 1 and 2 in progressive multifocal leukoencephalopathy CSF, can be indications of risk factors for progressive multifocal leukoencephalopathy development.
164. Identification by polymerase chain reaction fingerprinting of Cryptococcus neoformans serotype AD
- Author
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Viviani, M. A., Wen, H., Roverselli, A., Caldarelli-Stefano, R., Cogliati, M., Pasquale Ferrante, and Tortorano, A. M.
165. Detection of JC virus DNA in cerebrospinal fluid from multiple sclerosis patients
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Monica Mediati, Rita Caldarelli-Stefano, Domenico Caputo, Enrico Fainardi, Pasquale Ferrante, Elisabetta Omodeo-Zorini, and Enrico Granieri
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Adult ,Male ,Adolescent ,viruses ,JC virus ,Peripheral blood ,Urine ,medicine.disease_cause ,Peripheral blood mononuclear cell ,law.invention ,Multiple sclerosis ,03 medical and health sciences ,0302 clinical medicine ,Cerebrospinal fluid ,law ,Medicine ,Humans ,Polymerase chain reaction ,030212 general & internal medicine ,Mutation ,business.industry ,Progressive multifocal leukoencephalopathy ,virus diseases ,Middle Aged ,medicine.disease ,Virology ,Neurology ,DNA, Viral ,Female ,Neurology (clinical) ,business ,Nested polymerase chain reaction ,030217 neurology & neurosurgery - Abstract
JC virus (JCV), the causative agent of progressive multifocal leukoencephalopathy (PML), has been proposed as a possible aetiopathogenic factor in multiple sclerosis (MS). We performed a study to search the LT region of JCV genome by nested PCR in cerebrospinal fluid (CSF), peripheral blood mononuclear cell (PBMC) and urine samples collected from 121 MS patients, 24 patients with other neurological disorders (OND), 30 non neurological patients (NND) and in PBMCs and urine of 40 healthy subjects. JCV DNA has been found in the CSF of 11 MS patients (9%) while all the CSFs from the 24 OND and the 30 NND cases were negative. No significant differences have been observed as regard to the frequency of JCV DNA detection in PBMCs and urine between the MS patients and the control groups. Nucleotide sequences analysis of seven JCV CSF isolates showed that five strains were identical the prototypal strain, while the other two had a base mutation (T→C) in 4286 nucleotide (nt). The finding of JCV DNA in the CSF of MS patients suggest that JCV could play a role in the triggering and/or in the maintenance of MS aetiopathogenic process, and therefore it should be taken in consideration when monitoring this disease.
166. A simplified method to extract high-quality DNA from Cryptococcus neoformans
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Wen, H., Caldarelli-Stefano, R., Anna Maria Tortorano, Ferrante, P., and Viviani, M. A.
167. Use of magnetic beads for tissue DNA extraction and IS6110 Mycobacterium tuberculosis PCR
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Vago, L., Bonetto, S., Nebuloni, M., Costanzi, G., and Caldarelli-Stefano, R.
- Abstract
Polymerase chain reaction (PCR) techniques are used increasingly for the diagnosis of Mycobacterium tuberculosis infection and can be used on the DNA obtained from both frozen and formalin fixed, paraffin wax embedded tissues. However, the extraction of DNA by means of the conventional phenol/chloroform method is time consuming and requires the use of potentially dangerous chemical reagents. This paper describes a method based upon the use of magnetic beads for the extraction of M tuberculosis DNA from both routinely formalin fixed, paraffin wax embedded tissues and frozen tissues. Magnetic bead extracted DNA from brain, lymph node, and lung tissues collected from patients with human immunodeficiency virus and tuberculosis was compared with that extracted using the phenol/chloroform method. The magnetic bead extraction procedure requires less than two hours, including the time necessary to dewax the tissue sections. In all cases, the DNA extracted with both methods was amplified successfully by PCR for the M tuberculosis IS6110 sequence. Magnetic bead DNA extraction can be used on both frozen and archival tissues: the method is reliable, simple, sensitive, and rapid; in addition, it does not use hazardous procedures or specialised laboratory equipment and can be used for routine DNA isolation from various human tissues.
- Published
- 1999
168. ChemInform Abstract: Keggin (K5, H3O) [SiV3W9O40H]·xH2O: Characterization and Crystal Structure.
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Bonfim, Rodrigo de Paiva Floro, de Moura, Luiza Cristina, Eon, Jean‐Guillaume, Mentre, Olivier, Vezin, Herve, and Caldarelli, Stefano
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- 2014
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169. JC virus in human glial-derived tumors
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Caldarelli-Stefano, R., Boldorini, R., Monga, G., Meraviglia, E., Zorini, E.O., and Ferrante, P.
- Abstract
To investigate the presence and the role of polyomaviruses JC (JCV), BK (BKV), and the simian polyomavirus (SV40) in human brain tumors, samples from 25 glial-derived tumors (10 astrocytomas, 5 ependymomas, 5 oligodendrogliomas, and 5 glioblastomas) were examined by means of molecular biology and immunohistochemistry. Nested PCR of the large T (LT) region and its sequence analysis showed JCV in 6 cases (4 astrocytomas, 1 oligodendroglioma, and 1 ependymoma), while the transcriptional control region (TCR) was amplified only in 1 astrocytoma, the oligodendroglioma, and the ependymoma, one of which (astrocytoma) also stained positively by immunohistochemistry (JCV LT). TCR sequence analysis of the oligodendroglioma showed a JCV rearranged structure not related to a known viral strain, while the astrocytoma and the ependymoma disclosed a JCV Mad-4 strain that is known to induce brain tumors in animals. We suggest that JCV could have played a role in the pathogenesis of these brain tumors.
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- 2000
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170. Synthesis and Structural Characterization of a New Nanoporous-Like Keggin Heteropolyanion Salt: K3(H2O)4 [H2SiVW11O40] (H2O)8+x.
- Author
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de Paiva Floro Bonfim, Rodrigo, de Moura, Luiza Cristina, Pizzala, Helene, Caldarelli, Stefano, Paul, Sebastien, Eon, Jean Guillaume, Mentre, Olivier, Capron, Mickael, Delevoye, Laurent, and Payen, Edmond
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- 2007
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171. ChemInform Abstract: Investigation of Sodium Cations in Dehydrated Zeolites LSX, X, and Y by 23Na Off-Resonance RIACT Triple-Quantum and High Speed MAS NMR Spectroscopy.
- Author
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Caldarelli, Stefano, Buchholz, Andreas, and Hunger, Michael
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- 2001
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172. ChemInform Abstract: Investigation of Sodium Cations in Dehydrated Zeolites LSX, X, and Y by 23Na Off‐Resonance RIACT Triple‐Quantum and High Speed MAS NMR Spectroscopy.
- Author
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Caldarelli, Stefano, Buchholz, Andreas, and Hunger, Michael
- Abstract
ChemInform is a weekly Abstracting Service, delivering concise information at a glance that was extracted from about 100 leading journals. To access a ChemInform Abstract of an article which was published elsewhere, please select a “Full Text” option. The original article is trackable via the “References” option.
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- 2001
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173. Chromatographic-nuclear magnetic resonance can provide a prediction of high-pressure liquid chromatography shape selectivity tests
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Carrara, Caroline, Lopez, Claire, and Caldarelli, Stefano
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HIGH performance liquid chromatography , *NUCLEAR magnetic resonance spectroscopy , *THERMAL diffusivity , *CHEMICAL affinity , *STATIONARY phase (Chromatography) , *PREDICTION models , *SOLIDS - Abstract
Abstract: NMR diffusometry has been recently demonstrated as a means of investigating the mobility variations of solutes induced by chromatographic phases (under the acronym chromatographic-NMR). Particularly, a given compound has its average diffusivity reduced proportionally to its affinity towards the solid. In this work we propose the first comparison of chromatographic-NMR and tests for assessment of column performance, to investigate to what measure the novel approach could provide an assay of the outcome of a given stationary phase without the need of packing the relative column. Specifically, using bulk materials, we reproduce with very good agreement a shape selectivity test as reported in the catalog of a column producer, consisting of four probe molecules, applied to two different stationary phases. [Copyright &y& Elsevier]
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- 2012
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174. Non-uniformly sampled Maximum Quantum spectroscopy
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Piotto, Martial, Manjunatha Reddy, G.N., and Caldarelli, Stefano
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NUCLEAR magnetic resonance spectroscopy , *COHERENCE (Optics) , *NUCLEAR spin , *QUANTUM theory , *ELECTRONIC data processing , *SPECTRUM analysis - Abstract
Abstract: Maximum-Quantum (MaxQ) NMR is an approach that exploits the simple lineshape (a singlet) of the highest possible coherence quantum order for a given spin system to help resolving the interpretation of the spectrum of complex mixtures. In this setup, resolution in the indirect, multiple-quantum, dimension is crucial, and it may be linked to a long duration of the signal acquired along this axis. We explored if this boundary on the length of the indirect dimension could not necessarily translate into extended experimental times by applying Non-Uniform Sampling (NUS) schemes in conjunction with Recursive Multi-Dimensional Decomposition (R-MDD) data processing. The actual value of the MaxQ order depends on the size of the spin system, so that for a mixture several MQ correlation spectra must be recorded to detect all possible molecular fragments. As the sparseness of the MQ datasets vary dramatically in going from higher (sparser) to lower (denser) coherence orders, the optimal compressing conditions and the fidelity of NUS/R-MDD scheme may vary along the series of MQ spectra. The NUS-MaxQ approach is demonstrated on the aromatic region of the 1H spectrum of a mixture of 10 simple aromatic molecules. [Copyright &y& Elsevier]
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- 2011
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175. Cholesteric bonded stationary phases for high-performance liquid chromatography: a comparative study of the chromatographic behavior.
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Courtois, Cédric, Pagès, Guilhem, Caldarelli, Stefano, and Delaurent, Corinne
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HIGH performance liquid chromatography , *CHROMATOGRAPHIC analysis , *ANALYTICAL chemistry , *PHASE partition , *CHEMISTRY - Abstract
The properties of four cholesteric bonded stationary phases differing in the nature of the spacer and the end-capping were assessed using simple chromatographic tests based on the retention of nonpolar compounds and of planar or nonplanar probe solutes. All cholesteric columns showed a hydrophobicity close to that of conventional octadecyldimethylsilyl (ODS) materials. Non-end-capped cholesteric bonded phases showed greater selectivity than ODS ones and both end-capped cholesteric bonded phases exhibit behavior intermediate between that of the non-end-capped original material and that of the ODS bonded phase. [ABSTRACT FROM AUTHOR]
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- 2008
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176. Investigation of the Chromatographic Process via Pulsed-Gradient Spin -- Echo Nuclear Magnetic Resonance. Role of the Solvent Composition in Partitioning Chromatography.
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Pages, Guilhem, Delaurent, Corinne, and Caldarelli, Stefano
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NUCLEAR magnetic resonance , *MOLECULES , *CHROMATOGRAPHIC analysis , *SOLVENTS , *SOLUTION (Chemistry) , *SPECTRUM analysis , *FLUIDS , *DIFFUSION , *MECHANICS (Physics) - Abstract
The diffusional properties of molecules in solution vary dramatically upon addition of a solid chromatographic phase. This effect can be monitored via pulsed-gradient spin-echo NMR used in conjunction with moderately fast rotation of the sample (high-resolution magic angle spinning) to produce exploitable spectra. The molecular diffusion coefficients observed in this condition are averages reflecting the equilibrium population distribution among the different phases. It is thus possible to use this information for investigating a crucial step of reversed-phase chromatography, namely, the partitioning of the analyte between different phases. In this work, we describe the evolution of the apparent diffusion coefficient of typical solutes for water/acetonitrile solvent mixtures of varying proportions. [ABSTRACT FROM AUTHOR]
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- 2006
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177. Increased frequency of JC virus type 2 and of dual infection with JC virus type 1 and 2 in Italian progressive multifocal leukoencephalopathy patients.
- Author
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Ferrante, Pasquale, Mediati, Monica, Caldarelli-Stefano, Rita, Losciale, Loredana, Mancuso, Roberta, Cagni, Anna Elisabetta, and Maserati, Renato
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VIRUSES , *NEUROLOGICAL disorders , *AIDS , *NUCLEOTIDE sequence , *CEREBROSPINAL fluid , *BLOOD cells , *URINE - Abstract
To verify the possibility of different role of JC virus genotypes in the etiology of progressive multifocal leukoencephalopathy, we analysed several JC virus isolates amplified from AIDS patients with and without progressive multifocal leukoencephalopathy and healthy controls by nucleotide sequencing. Cerebrospinal fluid (CSF), peripheral blood mononuclear cells (PBMCs) and urine from 52 AIDS patients suffering from various neurological diseases including 21 cases of progressive multifocal leukoencephalopathy, and PBMCs and urine from healthy subjects were evaluated by nested polymerase chain reaction (PCR) for the presence of DNA belonging to the highly conserved large T antigen (LT) of JC virus. The different JC virus subtypes were identified by nucleotide sequence analysis of the virion protein (VP1) genomic region. JC virus DNA was detected in all the CSF samples from the progressive multifocal leukoencephalopathy patients, but not in the CSF from non-progressive multifocal leukoencephalopathy cases, while the frequency of JC virus DNA detection in the PBMCs and urine did not differ among the three groups studied. JC virus type 2 was detected only in progressive multifocal leukoencephalopathy patients, and in particular in 52.4% of their CSF samples. Moreover, in the CSF of 19.0% of the progressive multifocal leukoencephalopathy cases, dual infection with both JC virus types 1 and 2 was found. The data obtained in this study indicate that the unexpected involvement of JC virus type 2, a strain not common in Italy, and the high frequency of dual infection with both JC virus types 1 and 2 in progressive multifocal leukoencephalopathy CSF, can be indications of risk factors for progressive multifocal leukoencephalopathy development. [ABSTRACT FROM AUTHOR]
- Published
- 2001
- Full Text
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178. Enhanced diffusion-edited NMR spectroscopy of mixtures using chromatographic stationary phases.
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Viel, Stéphane, Ziarelli, Fabio, and Caldarelli, Stefano
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CHROMATOGRAPHIC analysis , *NUCLEAR magnetic resonance , *ANALYTICAL chemistry - Abstract
We introduce an analytical method that combines in one pot the advantages of column chromatography separation and NMR structural analysis. The separation of the NMR spectra of the components of a mixture can be achieved according to their apparent diffusion rates [James, T. L. and McDonald, G. G. (1973) J. Magn. Reson. 58, 58-61]. We show that the separation of the spectral components, corresponding to single molecular species, can be enhanced by order of magnitudes upon addition of a typical stationary phase used in HPLC. The solid phase imbibed by the mixture for analysis is an heterogeneous ensemble, so that solidstate NMR methods (high-resolution magic angle spinning) are necessary to recover high-resolution spectra. We demonstrate applications of this combination of high-resolution magic angle spinning and NMR diffusometry on test mixtures for direct (silica gel) and inverse (C18) columns. However, many common chromatographic supports available for HPLC should be readily adaptable for use with this technique. [ABSTRACT FROM AUTHOR]
- Published
- 2003
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179. Keggin (K{sub 5}, H{sub 3}O)[SiV{sub 3}W{sub 9}O{sub 40}H]·xH{sub 2}O: Characterization and crystal structure
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Caldarelli, Stefano [Université d'Aix-Marseille III (France)]
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- 2014
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180. Resolution-enhanced 2D NMR of complex mixtures by non-uniform sampling.
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Le Guennec, Adrien, Dumez, Jean‐Nicolas, Giraudeau, Patrick, and Caldarelli, Stefano
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NUCLEAR magnetic resonance spectroscopy , *OPTICAL resolution , *HIGH resolution spectroscopy , *SMALL molecules , *METABOLOMICS - Abstract
NMR is a powerful tool for the analysis of complex mixtures and the identification of individual components. Two-dimensional (2D) NMR potentially offers a wealth of information, but resolution is often sacrificed in order to contain experimental times. We explore the use of non-uniform sampling (NUS) to increase substantially the resolution of 2D NMR spectra of complex mixtures of small molecules, with no increase in experimental time. Two common pulse sequences for metabolomics applications are analysed, HSQC and TOCSY. Specific attention is paid to sensitivity in resolution-enhanced NUS spectra, using the signal-to-maximum-noise ratio as a metric. With a careful choice of sampling schedule and reconstruction algorithm, resolution in the 13C dimension for HSQC is increased by a factor of at least 32, with no loss in sensitivity and no spurious peaks. For TOCSY, multiplets can be resolved in the indirect dimension in a reasonable experimental time. These properties should increase the usefulness of 2D NMR for metabolomics applications by, for example, increasing the chances of metabolite identification. Copyright © 2015 John Wiley & Sons, Ltd. [ABSTRACT FROM AUTHOR]
- Published
- 2015
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181. Metabolomic and Lipidomic Analysis of Serum Samples following Curcuma longa Extract Supplementation in High-Fructose and Saturated Fat Fed Rats.
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Tranchida, Fabrice, Shintu, Laetitia, Rakotoniaina, Zo, Tchiakpe, Léopold, Deyris, Valérie, Hiol, Abel, and Caldarelli, Stefano
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METABOLOMICS , *LIPID analysis , *BLOOD serum analysis , *TURMERIC , *PLANT extracts , *DIETARY supplements , *SATURATED fatty acids , *LABORATORY rats - Abstract
We explored, using nuclear magnetic resonance (NMR) metabolomics and fatty acids profiling, the effects of a common nutritional complement, Curcuma longa, at a nutritionally relevant dose with human use, administered in conjunction with an unbalanced diet. Indeed, traditional food supplements have been long used to counter metabolic impairments induced by unbalanced diets. Here, rats were fed either a standard diet, a high level of fructose and saturated fatty acid (HFS) diet, a diet common to western countries and that certainly contributes to the epidemic of insulin resistance (IR) syndrome, or a HFS diet with a Curcuma longa extract (1% of curcuminoids in the extract) for ten weeks. Orthogonal projections to latent structures discriminant analysis (OPLS-DA) on the serum NMR profiles and fatty acid composition (determined by GC/MS) showed a clear discrimination between HFS groups and controls. This discrimination involved metabolites such as glucose, amino acids, pyruvate, creatine, phosphocholine/glycerophosphocholine, ketone bodies and glycoproteins as well as an increase of monounsaturated fatty acids (MUFAs) and a decrease of n-6 and n-3 polyunsaturated fatty acids (PUFAs). Although the administration of Curcuma longa did not prevent the observed increase of glucose, triglycerides, cholesterol and insulin levels, discriminating metabolites were observed between groups fed HFS alone or with addition of a Curcuma longa extract, namely some MUFA and n-3 PUFA, glycoproteins, glutamine, and methanol, suggesting that curcuminoids may act respectively on the fatty acid metabolism, the hexosamine biosynthesis pathway and alcohol oxidation. Curcuma longa extract supplementation appears to be beneficial in these metabolic pathways in rats. This metabolomic approach highlights important serum metabolites that could help in understanding further the metabolic mechanisms leading to IR. [ABSTRACT FROM AUTHOR]
- Published
- 2015
- Full Text
- View/download PDF
182. High-resolution magic angle spinning description of the interaction states and their kinetics among basic solutes and functionalized silica materials.
- Author
-
Lopez, Claire, Carrara, Caroline, Tchapla, Alain, and Caldarelli, Stefano
- Subjects
- *
CHEMICAL kinetics , *SILICA , *MOLECULAR probes , *CHROMATOGRAPHIC analysis , *CHEMICAL processes , *ANALYTICAL chemistry - Abstract
Highlights: [•] We investigated by HRMAS NMR mixtures of basic solutes and chromatographic phases. [•] The kinetics of interaction vary along the series of five solutes and eight phases. [•] Not all basic probes have been found to validate the fast kinetics assumption. [ABSTRACT FROM AUTHOR]
- Published
- 2013
- Full Text
- View/download PDF
183. Investigation of the catalytic activity of niobium phosphates for liquid phase alkylation of anisole with benzyl chloride
- Author
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de La Cruz, Marcus Henrique C., Rocha, Ângela S., Lachter, Elizabeth R., Forrester, Aline M.S., Reis, Michele Castro, San Gil, Rosane A.S., Caldarelli, Stefano, Farias, Andrea D., and Gonzalez, Wilma A.
- Subjects
- *
METAL catalysts , *PHOSPHATES , *NIOBIUM compounds , *ALKYLATION , *BENZYL compounds , *NUCLEAR magnetic resonance spectroscopy , *PYRIDINE , *FRIEDEL-Crafts reaction - Abstract
Abstract: In this work crystalline niobium phosphate with different degrees of crystallinity was synthesized by two different methods as catalysts for benzylation of anisole with benzyl chloride. The catalysts were characterized by XRD, N2 physisorption, solid state 31P and 93Nb NMR, structural FTIR and FTIR after adsorption of pyridine. The catalytic activities were measured in the benzylation of anisole with benzyl chloride. The NMR technique seems to be more sensitive in evaluating the presence of amorphous phase, compared with DRX data. The crystalline niobium phosphate prepared by recrystallization of a commercial sample presented activity comparable to its parent compound, in contrast with the crystalline catalyst prepared from niobic acid. The activity was attributed to the Lewis sites present mostly on the amorphous phase of the catalysts. [ABSTRACT FROM AUTHOR]
- Published
- 2010
- Full Text
- View/download PDF
184. Improved compositional analysis of block copolymers using Diffusion Ordered NMR Spectroscopy
- Author
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Viel, Stéphane, Mazarin, Michaël, Giordanengo, Rémi, Phan, Trang N.T., Charles, Laurence, Caldarelli, Stefano, and Bertin, Denis
- Subjects
- *
BLOCK copolymers , *DIFFUSION , *NUCLEAR magnetic resonance spectroscopy , *PERFORMANCE evaluation , *MESOMERISM , *MOLECULAR weights , *POLYMERIZATION , *POLYETHYLENE oxide - Abstract
Abstract: Block copolymers constitute a fascinating class of polymeric materials that are used in a broad range of applications. The performance of these materials is highly coupled to the physical and chemical properties of the constituting block copolymers. Traditionally, the composition of block copolymers is obtained by 1H NMR spectroscopy on purified copolymer fractions. Specifically, the integrals of a properly selected set of 1H resonances are compared and used to infer the number average molecular weight (M n) of one of the block from the (typically known) M n value of the other. As a corollary, compositional determinations achieved on imperfectly purified samples lead to serious errors, especially when isolation of the block copolymer from the initial macro initiator is tedious. This investigation shows that Diffusion Ordered NMR Spectroscopy (DOSY) can be used to provide a way to assess the advancement degree of the copolymerization purification/reaction, in order to optimize it and hence contribute to an improved compositional analysis of the resulting copolymer. To this purpose, a series of amphiphilic polystyrene-b-poly(ethylene oxide) block copolymers, obtained by controlled free-radical nitroxide mediated polymerization, were analyzed and it is shown that, under proper experimental conditions, DOSY allows for an improved compositional analysis of these block copolymers. [Copyright &y& Elsevier]
- Published
- 2009
- Full Text
- View/download PDF
185. Cholesteric bonded stationary phases for high-performance liquid chromatography: synthesis, physicochemical characterization, and chromatographic behavior of a phospho–cholesteric bonded support. A new way to mimic drug/membrane interactions?
- Author
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Courtois, Cédric, Allais, Christophe, Constantieux, Thierry, Rodriguez, Jean, Caldarelli, Stefano, and Delaurent, Corinne
- Subjects
- *
LIQUID chromatography , *CHROMATOGRAPHIC analysis , *BIOAVAILABILITY , *CELL membranes , *NUCLEAR magnetic resonance spectroscopy , *ANALYTICAL chemistry - Abstract
Among the various methods exploitable to determine the bioavailability of drugs, reversed-phase liquid chromatography (RPLC) appears to be suited to creation of patterns of prediction. In this context a new stationary phase was designed in this work to reproduce, in terms of chemical structure, as accurately as possible, the main elements of cellular membranes; which include phospholipids and cholesterol molecules. An efficient synthetic pathway was developed to prepare ligands that contain a phosphate head, a long alkyl chain chemically bonded to silica, and a cholesteric moiety, in order to mimic both hydrophilic and hydrophobic interactions, and “membrane-like” organization, respectively. The new stationary phase was characterized by Fourier-transform infra red (FTIR) and 1H–13C, 1H–31P, and 1H–29Si cross-polarization magic-angle-spinning nuclear magnetic resonance (CP MAS NMR) spectroscopy. Its chromatographic behavior has been studied by classical classification tests for RPLC columns. Despite its low surface coverage, the material produced exhibits high shape selectivity, possibly due to the organization of the grafted moieties. [ABSTRACT FROM AUTHOR]
- Published
- 2008
- Full Text
- View/download PDF
186. Improved solid-state NMR quantifications of active principles in pharmaceutical formulations
- Author
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Sanchez, Stéphanie, Ziarelli, Fabio, Viel, Stéphane, Delaurent, Corinne, and Caldarelli, Stefano
- Subjects
- *
PHARMACEUTICAL biotechnology , *SPECTRUM analysis , *TRANQUILIZING drugs , *ANXIETY - Abstract
Abstract: The facility of implementation reached by solid-state nuclear magnetic resonance (ssNMR) spectroscopy makes this technique increasingly popular in pharmaceutical sciences, and more specifically for the dosage of active principles in pharmaceutical formulations, since about 80% of the formulations currently available on the market are present in the solid form. In this case, analysis by MAS NMR allows faster and simplified protocols, as a solubilization step is not required. However, the specificity of the ssNMR experiments should be explicitly taken into account when designing an accurate measurement procedure. In this work we show that, by using a combination of external concentration referencing and a properly designed sample preparation optimized for quantitative determinations, quantification of active principles in pharmaceutical formulations can be performed with both speed and precision. The method is illustrated by reinvestigating the dosage of Meprobamate, an anxiolytic agent typically prescribed in case of anxiety or muscular soreness, present in a commercial formulation (Equanil®). Specifically, with respect to previously proposed analytical protocols, the procedure outlined here allows fast quantification with excellent precision. [Copyright &y& Elsevier]
- Published
- 2008
- Full Text
- View/download PDF
187. Pulsed field gradient magic angle spinning NMR self-diffusion measurements in liquids
- Author
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Viel, Stéphane, Ziarelli, Fabio, Pagès, Guilhem, Carrara, Caroline, and Caldarelli, Stefano
- Subjects
- *
PROPERTIES of matter , *SEMICONDUCTOR doping , *SOLID solutions , *DIFFUSION - Abstract
Abstract: Several investigations have recently reported the combined use of pulsed field gradient (PFG) with magic angle spinning (MAS) for the analysis of molecular mobility in heterogeneous materials. In contrast, little attention has been devoted so far to delimiting the role of the extra force field induced by sample rotation on the significance and reliability of self-diffusivity measurements. The main purpose of this work is to examine this phenomenon by focusing on pure liquids for which its impact is expected to be largest. Specifically, we show that self-diffusion coefficients can be accurately determined by PFG MAS NMR diffusion measurements in liquids, provided that specific experimental conditions are met. First, the methodology to estimate the gradient uniformity and to properly calibrate its absolute strength is briefly reviewed and applied on a MAS probe equipped with a gradient coil aligned along the rotor spinning axis, the so-called ‘magic angle gradient’ coil. Second, the influence of MAS on the outcome of PFG MAS diffusion measurements in liquids is investigated for two distinct typical rotors of different active volumes, 12 and 50μL. While the latter rotor led to totally unreliable results, especially for low viscosity compounds, the former allowed for the determination of accurate self-diffusion coefficients both for fast and slowly diffusing species. Potential implications of this work are the possibility to measure accurate self-diffusion coefficients of sample-limited mixtures or to avoid radiation damping interferences in NMR diffusion measurements. Overall, the outlined methodology should be of interest to anyone who strives to improve the reliability of MAS diffusion studies, both in homogeneous and heterogeneous media. [Copyright &y& Elsevier]
- Published
- 2008
- Full Text
- View/download PDF
188. Precision and sensitivity optimization of quantitative measurements in solid state NMR
- Author
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Ziarelli, Fabio, Viel, Stéphane, Sanchez, Stéphanie, Cross, David, and Caldarelli, Stefano
- Subjects
- *
METHODOLOGY , *INTERFERON inducers , *ETHNOMETHODOLOGY , *DISCOURSE analysis - Abstract
Abstract: This work presents a methodology for optimizing the precision, accuracy and sensitivity of quantitative solid state NMR measurements based on the external reference method. It is shown that the sample must be exclusively located within and completely span the coil region where the NMR response is directly proportional to the sample amount. We describe two methods to determine this “quantitative” coil volume, based on whether the probe is equipped or not with a gradient coil. In addition, to improve the sensitivity and the accuracy, an optimum rotor packing design is described, which allows the sample volume of the rotor to be matched to the quantitative coil volume. Experiments conducted on adamantane and NaCl, which are representative of a soft and hard material, respectively, show that one order of magnitude increase in experimental precision can be achieved with this methodology. Interestingly, the precision can be further improved by using the ERETIC™ method in order to compensate for most instrumental instabilities. [Copyright &y& Elsevier]
- Published
- 2007
- Full Text
- View/download PDF
189. Synthesis and Structural Characterization of a New Nanoporous-like Keggin Heteropolyanion Salt: K3(H2O)4[H2SiVW11O40](H2O)8 + x.
- Author
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de Paiva Floro Bonfim, Rodrigo, de Moura, Luiza Cristina, Pizzala, Hélène, Caldarelli, Stefano, Paul, Sébastien, Eon, Jean Guillaume, Mentré, Olivier, Capron, Mickaĕl, Delevoye, Laurent, and Payen, Edmond
- Subjects
- *
POTASSIUM salts , *CRYSTALS , *VANADIUM , *IONS , *CHEMISTRY - Abstract
Single crystals of the potassium salt K3(H2O)4[H2SiVW11O40](H2O)8+x of the vanadium monosubstituted α-Keggin dodecatunsgstosilicate were grown from an aqueous solution and analyzed by EDS, XRD, vibration and electronic spectroscopy, and ¹H, 51V, and 29Si solid-state NMR spectroscopy. Results indicate the formation of a nanoporous-like compound of hexagonal symmetry (space group P62) with large, water-filled channels running along the c axis. A uniform distribution of vanadium over the 12 metal sites of the α-Keggin anion is observed by XRD. Two different neighborhoods were characterized by 51V NMR in a 2:1 ratio (δiso = -546.3 and -536.2 ppm), in accordance with a difference in the number of potassium ions in the second coordination shell of vanadium. [ABSTRACT FROM AUTHOR]
- Published
- 2007
- Full Text
- View/download PDF
190. Boria modified alumina probed by methanol dehydration and IR spectroscopy
- Author
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de Farias, Andréa M. Duarte, Esteves, Angela M. Lavogade, Ziarelli, Fabio, Caldarelli, Stefano, Fraga, Marco A., and Appel, Lucia G.
- Subjects
- *
SPECTRUM analysis , *ALUMINUM oxide , *INFRARED spectroscopy - Abstract
Al2O3·B2O3 catalysts were synthesized by co-precipitation and impregnation methods applying two calcination temperatures and boria loadings. Catalysts were analyzed by IR spectroscopy of pyridine and CO2 adsorption and were evaluated in methanol dehydration. Results showed that boron addition to alumina causes a decrease of the number of basic and Lewis acid sites on alumina surface. It could also be observed an enhancement in acid strength of Lewis sites for impregnated samples. The results of methanol dehydration show that strong Bro¨nsted sites are not formed on borate alumina. [Copyright &y& Elsevier]
- Published
- 2004
- Full Text
- View/download PDF
191. Diagnosis of post-surgical fine-needle aspiration biopsies of thyroid lesions with indeterminate cytology using HRMAS NMR-based metabolomics.
- Author
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Rezig, Lamya, Servadio, Adele, Torregrossa, Liborio, Miccoli, Paolo, Basolo, Fulvio, Shintu, Laetitia, and Caldarelli, Stefano
- Subjects
- *
CYTOLOGY , *NUCLEAR magnetic resonance spectroscopy , *ALANINE , *THYROIDECTOMY ,THYROID cancer diagnosis - Abstract
Introduction: Ultrasound examination coupled with fine-needle aspiration (FNA) cytology is the gold standard for the diagnosis of thyroid cancer. However, about 10-40% of these analyses cannot be conclusive on the malignancy of the lesions and lead to surgery. The cytological indeterminate FNA biopsies are mainly constituted of follicular—patterned lesions, which are benign in 80% of the cases.Objectives: The development of a FNAB classification approach based on the metabolic phenotype of the lesions, complementary to cytology and other molecular tests in order to limit the number of patients undergoing unnecessary thyroidectomy.Methods: We explored the potential of a NMR-based metabolomics approach to improve the quality of the diagnosis from FNABs, using thyroid tissues collected post-surgically.Results: The NMR-detected metabolites were used to produce a robust OPLSDA model to discriminate between benign and malignant tumours. Malignancy was correlated with amino acids such as tyrosine, serine, alanine, leucine and phenylalanine and anti-correlated with myo-inositol, scyllo-inositol and citrate. Diagnosis accuracy was of 84.8% when only indeterminate lesions were considered.Conclusion: These results on model FNAB indicate that there is a clear interest in exploring the possibility to export NMR metabolomics to pre-surgical diagnostics. [ABSTRACT FROM AUTHOR]
- Published
- 2018
- Full Text
- View/download PDF
192. Rapid characterization of cocaine in illicit drug samples by 1D and 2D NMR spectroscopy.
- Author
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Yemloul M, Adyatmika IM, Caldarelli S, Ollivier D, and Campredon M
- Subjects
- Drug Contamination, Anesthetics, Local analysis, Cocaine analysis, Illicit Drugs analysis, Magnetic Resonance Spectroscopy methods
- Abstract
Seized samples of illegally produced cocaine have a very large variability in composition; a fact that may result in a challenge to their analysis. We demonstrate here a simple and fast method to detect the presence of cocaine in both hydrochloride and free-base forms in illicit drug samples by nuclear magnetic resonance (NMR) spectroscopy. This is achieved by combining the commonly used 1D spectra and diffusion-ordered spectroscopy and introducing the 2D maximum-quantum NMR approach to forensic analysis. The protocol allows the facile determination of the cocaine forms even in the presence of multiple adulterants. By relying on non-uniform sampling acceleration of 2D spectroscopy, the identification can be obtained in less than 3 min for 10 mg of product. Moreover, we show that intermolecular interactions of the sample constituents, while affecting the analysis result, do not interfere with the quality of the detection of the proposed protocol.
- Published
- 2018
- Full Text
- View/download PDF
193. Hepatic metabolic effects of Curcuma longa extract supplement in high-fructose and saturated fat fed rats.
- Author
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Tranchida F, Rakotoniaina Z, Shintu L, Tchiakpe L, Deyris V, Yemloul M, Stocker P, Vidal N, Rimet O, Hiol A, and Caldarelli S
- Subjects
- Animals, Betaine metabolism, Choline metabolism, Curcuma, Diet, High-Fat, Discriminant Analysis, Fatty Acids, Fructose, Glutathione metabolism, Least-Squares Analysis, Male, Malondialdehyde metabolism, Multivariate Analysis, Proton Magnetic Resonance Spectroscopy, Rats, Sprague-Dawley, Triglycerides metabolism, Dietary Supplements, Liver metabolism, Plant Extracts pharmacology
- Abstract
The metabolic effects of an oral supplementation with a Curcuma longa extract, at a dose nutritionally relevant with common human use, on hepatic metabolism in rats fed a high fructose and saturated fatty acid (HFS) diet was evaluated. High-resolution magic-angle spinning NMR and GC/MS in combination with multivariate analysis have been employed to characterize the NMR metabolite profiles and fatty acid composition of liver tissue respectively. The results showed a clear discrimination between HFS groups and controls involving metabolites such as glucose, glycogen, amino acids, acetate, choline, lysophosphatidylcholine, phosphatidylethanolamine, and β-hydroxybutyrate as well as an increase of MUFAs and a decrease of n-6 and n-3 PUFAs. Although the administration of CL did not counteract deleterious effects of the HFS diet, some metabolites, namely some n-6 PUFA and n-3 PUFA, and betaine were found to increase significantly in liver samples from rats having received extract of curcuma compared to those fed the HFS diet alone. This result suggests that curcuminoids may affect the transmethylation pathway and/or osmotic regulation. CL extract supplementation in rats appears to increase some of the natural defences preventing the development of fatty liver by acting on the choline metabolism to increase fat export from the liver.
- Published
- 2017
- Full Text
- View/download PDF
194. Combined maximum-quantum and DOSY 3D experiments provide enhanced resolution for small molecules in mixtures.
- Author
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Manjunatha Reddy GN, Yemloul M, and Caldarelli S
- Abstract
We illustrate here as the combination of high-order maximum-quantum (MaxQ) and Diffusion-Ordered SpectroscopY (DOSY) NMR experiments in a 3D layout allows superior resolution for crowded NMR spectra. Non-uniform sampling (NUS) allows compressing the experimental time effectively to reasonable durations. Because diffusion effects were encoded within multiple-quantum coherences, increased sensitivity to magnetic field gradients is observed, requiring compensation for convection effects. The experiment was demonstrated on the spectra of a mix of small polyaromatic molecules. Specifically, in the case analyzed, the experiment provided an extreme simplification through the MaxQDOSY-MaxQ projection plane that presents one peak per molecule. Copyright © 2016 John Wiley & Sons, Ltd., (Copyright © 2016 John Wiley & Sons, Ltd.)
- Published
- 2017
- Full Text
- View/download PDF
195. Ultrafast high-resolution magic-angle-spinning NMR spectroscopy.
- Author
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André M, Piotto M, Caldarelli S, and Dumez JN
- Abstract
We demonstrate the acquisition of ultrafast 2D NMR spectra of semi-solid samples, with a high-resolution magic-angle-spinning setup. Using a recent double-quantum NMR pulse sequence in optimised synchronisation conditions, high-quality 2D spectra can be recorded for a sample under magic-angle spinning. An illustration is given with a semi-solid sample of banana pulp.
- Published
- 2015
- Full Text
- View/download PDF
196. Ultrafast double-quantum NMR spectroscopy.
- Author
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Guennec AL, Giraudeau P, Caldarelli S, and Dumez JN
- Abstract
We demonstrate the acquisition of double-quantum NMR spectra in less than three seconds and illustrate the synergies between double-quantum and ultrafast NMR spectroscopy for the analysis of complex mixtures.
- Published
- 2015
- Full Text
- View/download PDF
197. Can we trust untargeted metabolomics? Results of the metabo-ring initiative, a large-scale, multi-instrument inter-laboratory study.
- Author
-
Martin JC, Maillot M, Mazerolles G, Verdu A, Lyan B, Migné C, Defoort C, Canlet C, Junot C, Guillou C, Manach C, Jabob D, Bouveresse DJ, Paris E, Pujos-Guillot E, Jourdan F, Giacomoni F, Courant F, Favé G, Le Gall G, Chassaigne H, Tabet JC, Martin JF, Antignac JP, Shintu L, Defernez M, Philo M, Alexandre-Gouaubau MC, Amiot-Carlin MJ, Bossis M, Triba MN, Stojilkovic N, Banzet N, Molinié R, Bott R, Goulitquer S, Caldarelli S, and Rutledge DN
- Abstract
The metabo-ring initiative brought together five nuclear magnetic resonance instruments (NMR) and 11 different mass spectrometers with the objective of assessing the reliability of untargeted metabolomics approaches in obtaining comparable metabolomics profiles. This was estimated by measuring the proportion of common spectral information extracted from the different LCMS and NMR platforms. Biological samples obtained from 2 different conditions were analysed by the partners using their own in-house protocols. Test #1 examined urine samples from adult volunteers either spiked or not spiked with 32 metabolite standards. Test #2 involved a low biological contrast situation comparing the plasma of rats fed a diet either supplemented or not with vitamin D. The spectral information from each instrument was assembled into separate statistical blocks. Correlations between blocks (e.g., instruments) were examined (RV coefficients) along with the structure of the common spectral information (common components and specific weights analysis). In addition, in Test #1, an outlier individual was blindly introduced, and its identification by the various platforms was evaluated. Despite large differences in the number of spectral features produced after post-processing and the heterogeneity of the analytical conditions and the data treatment, the spectral information both within (NMR and LCMS) and across methods (NMR vs. LCMS) was highly convergent (from 64 to 91 % on average). No effect of the LCMS instrumentation (TOF, QTOF, LTQ-Orbitrap) was noted. The outlier individual was best detected and characterised by LCMS instruments. In conclusion, untargeted metabolomics analyses report consistent information within and across instruments of various technologies, even without prior standardisation.
- Published
- 2015
- Full Text
- View/download PDF
198. Evidence for early intracellular accumulation of volatile compounds during spadix development in Arum italicum L. and preliminary data on some tropical Aroids.
- Author
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Leguet A, Gibernau M, Shintu L, Caldarelli S, Moja S, Baudino S, and Caissard JC
- Subjects
- Araceae growth & development, Arum growth & development, Chromatography, Gas, Plant Leaves chemistry, Terpenes analysis, Araceae chemistry, Arum chemistry, Pollination, Volatile Organic Compounds analysis
- Abstract
Staining and histochemistry of volatile organic compounds (VOCs) were performed at different inflorescence developmental stages on nine aroid species; one temperate, Arum italicum and eight tropical from the genera Caladium, Dieffenbachia and Philodendron. Moreover, a qualitative and quantitative analysis of VOCs constituting the scent of A. italicum, depending on the stage of development of inflorescences was also conducted. In all nine species, vesicles were observed in the conical cells of either the appendix or the stamens (thecae) and the staminodes. VOCs were localised in intracellular vesicles from the early stages of inflorescence development until their release during receptivity of gynoecium. This localisation was observed by the increase of both number and diameter of the vesicles during 1 week before receptivity. Afterwards, vesicles were fewer and smaller but rarely absent. In A. italicum, staining and gas chromatography analyses confirmed that the vesicles contained terpenes. The quantitatively most important ones were the sesquiterpenes, but monoterpenes were not negligible. Indeed, the quantities of terpenes matched the vesicles' size evolution during 1 week. Furthermore, VOCs from different biosynthetic pathways (sesquiterpenes and alkanes) were at their maximum quantity 2 days before gynoecium receptivity (sesquiterpenes and alkanes) or during receptivity (isobutylamine, monoterpenes, skatole and p-cresol). VOCs seemed to be emitted during gynoecium receptivity and/or during thermogenesis, and FADs are accumulated after thermogenesis in the spadix. These complex dynamics of the different VOCs could indicate specialisation of some VOCs and cell machinery to attract pollinators on the one hand and to repulse/protect against phytophagous organisms and pathogens after pollination on the other hand.
- Published
- 2014
- Full Text
- View/download PDF
199. A review of blind source separation in NMR spectroscopy.
- Author
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Toumi I, Caldarelli S, and Torrésani B
- Subjects
- Animals, Humans, Signal Processing, Computer-Assisted, Algorithms, Complex Mixtures analysis, Nuclear Magnetic Resonance, Biomolecular methods, Software
- Abstract
Fourier transform is the data processing naturally associated to most NMR experiments. Notable exceptions are Pulse Field Gradient and relaxation analysis, the structure of which is only partially suitable for FT. With the revamp of NMR of complex mixtures, fueled by analytical challenges such as metabolomics, alternative and more apt mathematical methods for data processing have been sought, with the aim of decomposing the NMR signal into simpler bits. Blind source separation is a very broad definition regrouping several classes of mathematical methods for complex signal decomposition that use no hypothesis on the form of the data. Developed outside NMR, these algorithms have been increasingly tested on spectra of mixtures. In this review, we shall provide an historical overview of the application of blind source separation methodologies to NMR, including methods specifically designed for the specificity of this spectroscopy., (Copyright © 2014. Published by Elsevier B.V.)
- Published
- 2014
- Full Text
- View/download PDF
200. Proteomics, and metabolomics: magnetic resonance spectroscopy for the presurgical screening of thyroid nodules.
- Author
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Minuto MN, Shintu L, and Caldarelli S
- Abstract
We review the progress and state-of-the-art applications of studies in Magnetic Resonance Spectroscopy (MRS) and Imaging as an aid for diagnosis of thyroid lesions of different nature, especially focusing our attention to those lesions that are cytologically undetermined. It appears that the high-resolution of High-Resolution Magic-Angle-Spinning (HRMAS) MRS improves the overall accuracy of the analysis of thyroid lesions to a point that a significant improvement in the diagnosis of cytologically undetermined lesions can be expected. This analysis, in the meantime, allows a more precise comprehension of the alterations in the metabolic pathways induced by the development of the different tumors. Although these results are promising, at the moment, a clinical application of the method to the common workup of thyroid nodules cannot be used, due to both the limitation in the availability of this technology and the wide range of techniques, that are not uniformly used. The coming future will certainly see a wider application of these methods to the clinical practice in patients affected with thyroid nodules and various other neoplastic diseases.
- Published
- 2014
- Full Text
- View/download PDF
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