568 results on '"Baak, Jan P."'
Search Results
152. Histological surrogate endpoints using quantitative cytometry
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Baak, Jan P. A., primary
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- 1993
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153. Traditional Chinese Medicine Herbal Treatment May Have a Relevant Impact on the Prognosis of Patients With Stage IV Adenocarcinoma of the Lung Treated With Platinum-Based Chemotherapy or Combined Targeted Therapy and Chemotherapy.
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Huiru Guo, Jia Xiang Liu, Ling Xu, Madebo, Tesfaye, and Baak, Jan P. A.
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Background: Targeted therapy (TT), chemotherapy, and traditional Chinese medicine herbal treatment (TCM) can improve the prognosis of advanced pulmonary adenocarcinoma patients. Their independent prognostic value is unknown. Objective: To study whether TCM improves survival in stage IV pulmonary adenocarcinoma patients with platinum-based chemotherapy (PBT), or combined PBT and second-line TT. Methods: Retrospective analysis of 133 fully ambulant clinical outpatients treated with PBT alone or PBT with/without second-line TT, with/without TCM. Univariate (Kaplan—Meier) and multivariable (Cox model) survival analysis were performed, using disease-specific mortality as an endpoint. Results: Gender (P = .002), TT (P < .0001), and TCM (P < .0001) had univariate prognostic value but not age, radiotherapy, or TCM syndrome differentiation (P > .10). TCM herbal treatment (P < .0001) and TT (P = .03) had multivariable independent prognostic value. TCM-treated patients (n = 103, PBT+TT+TCM+ = 62; PBT+TT−TCM+ =41) had 88% 1-year overall survival rate with median survival time (MST) of 27 months, contrasting 27% 1-year overall survival and MST of 5.0 months for non-TCM-treated (n = 30) patients. Patients with chemotherapy/TT/TCM (PBT+TT+TCM+, n = 62), TCM without TT (PBT+TT−TCM+, n = 41), or chemotherapy only (PBT+TT−TCM−, n = 30), had 1-year survival rates of 94%, 78%, and 27% respectively; for these 3 groups, respectively, MST was not reached (MST of 30.9 months), 22.6, and 5.0 months (P < .0001). Conclusions: TCM herbal treatment may improve survival of stage IV pulmonary adenocarcinoma patients treated with chemotherapy without or with second-line TT. This warrants formal phase 1 and 2 trials and ultimately properly designed prospective clinical validation trials with adequate methodology developed for data collection. [ABSTRACT FROM PUBLISHER]
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- 2011
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154. Neoplastic transformation of endocervicosis into an extraovarian mucinous cystadenocarcinoma.
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Kruse, Arnold-Jan, Slangen, Brigitte, Dunselman, Gerard A., Pirens, Tina, Bakers, Frans C.H., Baak, Jan P.A., and de Vijver, Koen Van
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OVARIAN cancer ,ADENOCARCINOMA ,GENETIC mutation ,HISTOLOGY ,ETIOLOGY of diseases ,CANCER treatment - Abstract
Summary: Although extraovarian mucinous cystadenocarcinomas resemble primary ovarian carcinomas, both histologically and clinically, their specific etiology is not clear. This is the first report to show neoplastic transformation of endocervicosis into an extraovarian mucinous cystadenocarcinoma. The histologic spectrum and specific KRAS mutational analysis for this tumor were the same as for their ovarian counterparts. This supports a müllerian origin and the current approach to extrapolate the results from ovarian mucinous cystadenocarcinoma trials in prescribing treatment for patients with extraovarian mucinous cystadenocarcinomas. [Copyright &y& Elsevier]
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- 2011
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155. Discrimination of grade 2 and 3 cervical intraepithelial neoplasia by means of analysis of water soluble proteins recovered from cervical biopsies.
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Uleberg, Kai-Erik, Munk, Ane Cecilie, Brede, Cato, Gudlaugsson, Einar, van Diermen, Bianca, Skaland, Ivar, Malpica, Anais, Janssen, Emiel A. M., Hjelle, Anne, and Baak, Jan P. A.
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CERVIX uteri diseases ,PROTEINS ,PROTEOMICS ,BIOPSY ,FORMALDEHYDE ,HEAT shock proteins ,APOLIPOPROTEINS - Abstract
Background: Cervical intraepithelial neoplasia (CIN) grades 2 and 3 are usually grouped and treated in the same way as "high grade", in spite of their different risk to cancer progression and spontaneous regression rates. CIN2-3 is usually diagnosed in formaldehyde-fixed paraffin embedded (FFPE) punch biopsies. This procedure virtually eliminates the availability of water-soluble proteins which could have diagnostic and prognostic value. Aim: To investigate whether a water-soluble protein-saving biopsy processing method followed by a proteomic analysis of supernatant samples using LC-MS/MS (LTQ Orbitrap) can be used to distinguish between CIN2 and CIN3. Methods: Fresh cervical punch biopsies from 20 women were incubated in RPMI1640 medium for 24 hours at 4°C for protein extraction and subsequently subjected to standard FFPE processing. P16 and Ki67-supported histologic consensus review CIN grade (CIN2, n = 10, CIN3, n = 10) was assessed by independent gynecological pathologists. The biopsy supernatants were depleted of 7 high abundance proteins prior to uni-dimensional LC-MS/MS analysis for protein identifications. Results: The age of the patients ranged from 25-40 years (median 29.7), and mean protein concentration was 0.81 mg/ml (range 0.55 - 1.14). After application of multistep identification criteria, 114 proteins were identified, including proteins like vimentin, actin, transthyretin, apolipoprotein A-1, Heat Shock protein beta 1, vitamin D binding protein and different cytokeratins. The identified proteins are annotated to metabolic processes (36%), signal transduction (27%), cell cycle processes (15%) and trafficking/transport (9%). Using binary logistic regression, Cytokeratin 2 was found to have the strongest independent discriminatory power resulting in 90% overall correct classification. Conclusions: 114 proteins were identified in supernatants from fresh cervical biopsies and many differed between CIN2 and 3. Cytokeratin 2 is the strongest discriminator with 90% overall correct classifications. [ABSTRACT FROM AUTHOR]
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- 2011
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156. Co-expression of estrogen receptor α and Apolipoprotein D in node positive operable breast cancer - possible relevance for survival and effects of adjuvant tamoxifen in postmenopausal patients.
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Søiland, Håvard, Skaland, Ivar, Varhaug, Jan Erik, Kørner, Hartwig, Janssen, Emiel A. M., Gudlaugsson, Einar, Baak, Jan P. A., and Søreide, Jon Arne
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HORMONE receptors ,BREAST cancer ,POSTMENOPAUSE ,IMMUNOLOGICAL adjuvants ,PROGESTERONE receptors ,IMMUNOHISTOCHEMISTRY ,CANCER research - Abstract
Background. Estrogen receptor-α (ERα) is an important prognostic and predictive marker in breast cancer. ERα signaling normally down-regulates expression of Apolipoprotein D (ApoD), a lipocalin that binds, transports or chelates lipophilic ligands, including tamoxifen (TAM). Hence, the co-expression of ApoD may therefore identify clinical relevant subgroups of ERα positive breast cancer patients. Material and methods. ApoD, ERα, and progesterone receptor (PR) protein expressions were determined by immunohistochemistry (IHC) in primary tumors of 290 patients with operable breast cancer. The median follow-up was 12 years. Patients were stratified according to age, nodal stage and the expression of ERα and the combined cytoplasm and nuclear staining of ApoD (ApoDCN). Results. In elderly women (≥70 years) (n = 76), ApoDCN expression identified different prognostic subgroups in ERα positive patients (Trend: p < 0.0001). Multivariate analysis in this age group (n = 72), showed that the ERα-positive /ApoDCN-negative subgroup had a better breast cancer specific survival (BCSS) compared with the ERα-positive/ApoDCN-positive group (hazard ratio (HR) = 4.3; 95% CI = 1.6-11.9; p = 0.005). This difference was predominantly seen in the node positive patients (n = 30) (HR = 10.5; 95% CI = 2.3-47.6; p = 0.002). In a subset of postmenopausal ERα-positive/node positive patients (n = 60) previously enrolled in a trial on 2 year adjuvant TAM 20 mg vs. placebo, a better BCSS was observed in ApoDCN negative patients compared to placebo (p = 0.02). In ApoDCN positive patients, adjuvant TAM did not provide any survival benefit. Discussion. ERα and ApoDCN co-expression seems to be of prognostic importance in node positive elderly patients with operable breast cancer. In addition, we hypothesize that ApoDCN expression may be a novel marker and/or mechanism of TAM resistance in postmenopausal node positive patients. Thus, when targeting the ERα pathway in these patients, the ApoD status of the tumor may be of clinical relevance. [ABSTRACT FROM AUTHOR]
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- 2009
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157. Prognostic value of morphometry and DNA flow-cytometry features of invasive breast cancers detected by population screening: Comparison with control group of hospital patients
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Uyterlinde, Anne M., primary, Baak, Jan P. A., additional, Schipper, Nellie W., additional, Peterse, Hans J., additional, Meijer, Jos W. R., additional, Vooys, Peter G., additional, and Matze, Erna, additional
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- 1991
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158. Squamous morules are functionally inert elements of premalignant endometrial neoplasia.
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Lin, Ming-Chieh, Lomo, Lesley, Baak, Jan PA, Eng, Charis, Ince, Tan A, Crum, Christopher P, Mutter, George L, and Baak, Jan P A
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- 2009
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159. Microsatellite Instability and DNA Ploidy in Colorectal Cancer.
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Søreide, Kjetil, Slewa, Aida, Stokkeland, Pål J., van Diermen, Bianca, Janssen, Emiel A. M., Søreide, Jon Arne, Baak, Jan P. A., and Kørner, Hartwig
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COLON cancer ,PATIENTS ,SURGERY ,MICROSATELLITE repeats ,DNA ,TUMORS ,LYMPH nodes ,METASTASIS - Abstract
The article focuses on a study to investigate the effect of microsatellite instability (MSI) and deoxyribonucleic acid (DNA) ploidy on surveillance after resection for colorectal cancer post-surgery. The study concluded that the patients who had microsatellite instable tumors were at increased risk for locoregional recurrence, whereas lymph node status predicted distant metastasis. Comments on ways to improve clinical surveillance and choice of modality are also presented.
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- 2009
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160. Biopsy histomorphometry predicts uterine myoinvasion by endometrial carcinoma: a Gynecologic Oncology Group study.
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Mutter, George L., Kauderer, James, Baak, Jan P.A., and Alberts, David
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WOMEN'S health ,DISEASES in women ,CLINICAL pathology ,CANCER in women - Abstract
Summary: A barrier to nonsurgical management of premalignant endometrial disease is the need to perform hysterectomy to exclude concurrent myoinvasive endometrioid adenocarcinoma. Occult adenocarcinoma rates for premalignant disease diagnosed by biopsy or curettage are approximately 40%. We applied the histomorphometric 4-class rule (“4C,” which measures epithelial abundance, thickness, and nuclear variation) to diagnostic biopsies to predict myoinvasive cancer outcomes at hysterectomy. Women with endometrial biopsies or curettages having a community diagnosis of atypical endometrial hyperplasia were enrolled in a clinical trial in which subsequent hysterectomy was scored for endometrial adenocarcinoma, and 4C rule ability to predict cancer outcomes was measured. Qualifying biopsies were stratified into high- and low-risk histomorphometric subgroups. Two-hundred thirty-three women had biopsies suited to morphometry and scorable hysterectomy outcomes, of which 46% contained adenocarcinoma. Assignment to a high-risk category by the 4C rule was highly sensitive in predicting any (71%) or deeply (92%) myoinvasive adenocarcinoma at hysterectomy, and assignment to a low-risk group had a high negative predictive value for absence of any (90%) or deeply (99%) myoinvasive disease. Volume percentage epithelium was associated with myoinvasive cancer outcomes above a threshold of 50% (P < .001), and a measure of nuclear pleomorphism was significantly increased (P = .004) in deeply myoinvasive cancers. Formal histomorphometry of endometrial biopsies using the 4C rule has been validated as a means to identify a subset of women with premalignant disease who are unlikely to have concurrent myoinvasive adenocarcinoma and who may qualify for alternative nonsurgical therapies. [Copyright &y& Elsevier]
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- 2008
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161. Prognostic differences of World Health Organization–assessed mitotic activity index and mitotic impression by quick scanning in invasive ductal breast cancer patients younger than 55 years.
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Skaland, Ivar, van Diest, Paul J., Janssen, Emiel A.M., Gudlaugsson, Einar, and Baak, Jan P.A.
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BREAST cancer ,CANCER patients ,CELL cycle ,LYMPH nodes ,RESEARCH - Abstract
Summary: The proliferation marker mitotic activity index is the strongest prognostic indicator in lymph node–negative breast cancer. The World Health Organization (WHO) 2003–defined procedure for determining WHO-mitotic activity index is often replaced by a quick scan mitotic impression. We evaluated the prognostic consequences of this practice in 433 T
1-3 N0 M0 lymph node–negative invasive ductal type breast cancers with long-term follow-up (median, 112 months; range, 12-187 months). Twenty-seven percent of the studied cases developed distant metastases, and 25% died of disease. Agreement between WHO-mitotic activity index (0-5 = 1, 6-10 = 2, >10 = 3) and mitotic impression (1, 2, 3) categories was 66% (κ = 0.41), including 85% for category 1, 26% for category 2, and 52% for category 3. The WHO-mitotic activity index was a much stronger prognosticator than the mitotic impression, and the 10-year survival rates of the same categories (eg, mitotic activity index and mitotic impression category both 2) differed greatly. When grade was assessed by combining WHO-mitotic activity index or mitotic impression with the same values for tubular formation and nuclear atypia, grades disagreed in 18% of the cases. Deviation from the formal WHO-mitotic activity index assessment guidelines in breast cancer often results in erroneous prognosis estimations with therapeutic consequences and may explain why the prognostic value of proliferative activity in breast cancer is not always confirmed. [Copyright &y& Elsevier]- Published
- 2008
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162. Low p53 and retinoblastoma protein expression in cervical intraepithelial neoplasia grade 3 lesions is associated with coexistent adenocarcinoma in situ.
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Kruse, Arnold-Jan, Skaland, Ivar, Munk, Ane Cecilie, Janssen, Emiel, Gudlaugsson, Einar, and Baak, Jan P.A.
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RETINOBLASTOMA ,ADENOCARCINOMA ,PRECANCEROUS conditions ,PAPILLOMAVIRUS diseases ,EPITHELIAL cells - Abstract
Summary: Clinically, it is important to distinguish cervical intraepithelial neoplasia grade 3 (CIN3) lesions with and without coexisting adenocarcinoma in situ (AIS), but endocervical curetting can be false negative. The frequency of high-risk human papillomavirus genotypes in CIN3 patients with and without AIS differs. CIN3 epithelial cell cycle regulator expression may reflect these differences and thereby indicate coexistent AIS. G1 pathway epithelial cell cycle regulators (pRb, p53, cyclin D, p16) and Ki-67 were analyzed by quantitative immunohistochemistry in CIN3s with and without AIS. Compared with the normal cervical squamous epithelium, the CIN3 epithelium in small punch biopsies showed strong diffuse p16 and Ki-67 expression. CIN3s with coexistent AIS had a significantly lower percentage of pRb (P = .03)- and p53 (P = .03)-positive nuclei in the lower half of the epithelium than CIN3s without coexistent AIS. None of the 10 cases with values of either pRb-positive nuclei 30% or greater or p53-positive nuclei 15% or greater in the lower half of the epithelium had coexistent AIS, contrasting 8 (24%) of the 33 cases with both low values of p53- and pRb-positive nuclei. Combined low p53 and pRb expression in the lower half of the epithelium in punch biopsies is associated with coexistent AIS in the cone. Despite the fact that the results of the current study are interesting and potentially clinically relevant, it should be emphasized that they must be confirmed according to Good Laboratory Practice in independent patient groups, preferably also in a prospective study. [Copyright &y& Elsevier]
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- 2008
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163. Genomics and proteomics in neoplasia.
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Baak, Jan P. A. and Mohan, Harsh
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- 2007
164. Nuclear size distinguishes low- from high-grade ovarian serous carcinoma and predicts outcome.
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Hsu, Chih-Yi, Kurman, Robert J., Vang, Russell, Wang, Tian-Li, Baak, Jan, and Shih, Ie-Ming
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CANCER ,ONCOLOGY ,EPITHELIUM ,CARCINOGENS - Abstract
Summary: A dualistic model for ovarian serous carcinogenesis based on morphological and molecular genetic studies has recently been proposed. This model divides serous carcinoma into low- and high-grade tumors, which develop along distinct molecular pathways. In this report, we evaluated computerized morphometry to determine its utility in distinguishing low- and high-grade serous carcinoma. The mean nuclear area (MNA) and the volume percentage of epithelium (VPE) in 93 high-grade serous carcinomas was measured and compared with 16 low-grade serous carcinomas and 21 serous borderline tumors, the putative precursor of low-grade serous carcinoma. We found that both MNA and VPE were significantly higher in high-grade serous carcinoma compared with low-grade serous carcinoma and serous borderline tumors (P < .001 and P = .02, respectively). There was no significant difference in MNA and VPE between low-grade carcinoma and serous borderline tumors (P > .3). Among high-grade serous carcinomas, those with an MNA of 46 μm
2 or higher had a poorer survival (P = .035) than those with an MNA below 46 μm2 . In contrast, VPE and tumor grade (moderately versus poorly differentiated) had no significant prognostic value. The morphometry findings lend further support to the dualistic model of ovarian serous carcinogenesis and suggest that MNA is an excellent adjunctive tool for distinguishing low- from high-grade serous carcinomas. In addition, MNA is an independent prognostic factor for high-grade serous carcinoma. [Copyright &y& Elsevier]- Published
- 2005
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165. Lack of PTEN expression in endometrial intraepithelial neoplasia is correlated with cancer progression.
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Baak, Jan Pieter Albert, van Diermen, Bianca, Steinbakk, Anita, Janssen, Emiel, Skaland, Ivar, Mutter, George L., Fiane, Bent, and Løvslett, Kjell
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CANCER patients ,HYPERPLASIA ,GENETIC polymorphisms ,BIOPSY - Abstract
Summary: We tested the hypothesis that PTEN inactivation may stratify cancer progression risk among putative endometrial hyperplasias, classified prognostically by means of the morphometric D score (DS). The DS, calculated from 3 morphometric variables measured in routine hematoxylin-eosin–stained endometrial biopsy slides, is the most sensitive and specific method of endometrial cancer risk prediction currently available. Clinical outcomes of 103 women with endometrial hyperplasia on biopsy were tallied according to the DS. Seven (7/103; 7%) patients with carcinoma during follow-up were all distributed within the high-risk prognostic group (ie, DS <1 = endometrial intraepithelial neoplasia [EIN]) (7/21; 33% progression). None of the 82 cases with a DS higher than 1 progressed. All cases that progressed were PTEN null, indicating that this genotype is capable of further stratifying cancer progression risk in hyperplasias irrespective of histological categorization. However, only 16% of the PTEN-null cases progressed. When PTEN expression pattern was combined with EIN, the prognostic power was greatly increased (specificity from 63% for PTEN and 85% for EIN to 93% when combined; positive predictive value from 16% and 33% to 50%). We conclude that loss of PTEN expression is the first biomarker in EIN that increases the accuracy of the prognostic DS to predict cancer progression risk. Unless endometrial hyperplasias are stratified by histological morphometric D-Score, PTEN has a low positive predictive value. [Copyright &y& Elsevier]
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- 2005
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166. Further evaluation of the prognostic value of morphometric and flow cytometric parameters in breast‐cancer patients with long follow‐up
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Uyterlinde, Anne M., primary, Baak, Jan P. A., additional, Schipper, Nellie W., additional, Peterse, Hans, additional, Matze, Erna, additional, and Meuer, Chris J. L., additional
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- 1990
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167. Ki67 predicts progression in early CIN: Validation of a multivariate progression-risk model.
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Kruse, Arnold-Jan, Baak, Jan P. A., Janssen, Emiel A., Kjellevold, Kjell-Henning, Fiane, Bent, Lovslett, Kjell, Bergh, Johan, and Robboy, Stanley
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MULTIVARIATE analysis , *PATIENTS , *ANALYSIS of variance , *BIOPSY , *EPITHELIUM , *PATHOLOGY - Abstract
This study of early CIN biopsies (25 CIN1 and 65 CIN2) with long follow‐up was done to validate, in a new group of patients, the value of Ki67 immuno‐quantitative features to predict high CIN grade in a follow‐up biopsy (often denoted to as “progression”), as described in a previous study. Each biopsy in the present study was classified with the previously described Ki67‐model (consisting of the stratification index and the % positive nuclei in the middle third layer of the epithelium) as “low‐risk” or “high‐risk”, and matched with the follow‐up outcome (progression‐or‐not). Furthermore, it was studied whether subjective evaluation of the Ki67 sections by experienced pathologists, who were aware of the prognostic quantitative Ki67 features, could also predict the outcome. Thirdly, the reproducibility of routine use of the quantitative Ki67‐model was assessed. Fifteen cases progressed (17%) to CIN3, 2/25 CIN1 (8%) and 13/65 CIN2 (20%), indicating that CIN grade (as CIN1 or CIN2) is prognostic and that the percentage of CIN1 and CIN2 cases with progression in the present study is comparable to many previous studies. However, the quantitative Ki67 model had stronger prognostic value than CIN grade as none of the 40 “Ki67‐model low‐risk” patients progressed, in contrast to 15 (30%) of the 50 “Ki67‐model high‐risk” patients (p<0.001). In multivariate analysis, neither CIN grade nor any of the other quantitative Ki67 features added to the abovementioned prognostic Ki67‐model. Subjective analysis of the Ki67 features was also prognostic, although quantitative assessments gave better results. Routine application of the quantitative Ki67‐model in CIN1 and CIN2 was well reproducible. In conclusion, the results confirm that quantitative Ki67 features have strong prognostic value for progression in early CIN lesions. [ABSTRACT FROM AUTHOR]
- Published
- 2004
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168. Quantitative Assessment of Gastric Antrum Atrophy Shows Restitution to Normal Histology after Helicobacter pylori Eradication.
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Van Grieken, Nicole C.T., Meijer, Gerrit A., Kale, Ilse, Bloemena, Elisabeth, Lindeman, Jan, Offerhaus, G. Johan A., Meuwissen, Stefan G. M., Baak, Jan P. A., and Kuipers, Ernst J.
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MUSCULAR atrophy ,HELICOBACTER pylori ,DIAGNOSTIC specimens ,ENDOSCOPY ,MEDICAL research - Abstract
Background/Aims: Grading gastric mucosal atrophy in antrum biopsy specimens remains a controversial subject because of limitations in interobserver agreement. We previously described a reliable, quantitative method for grading atrophy of the corpus mucosa with excellent reproducibility and good correlation with the Sydney scores. The aims of the present study were to evaluate the applicability of this method for the grading of antral atrophy and to study the effect of Helicobacter pylori eradication on the antral mucosa. Methods: Antrum biopsy specimens were collected from 71 gastroesophageal reflux disease patients at baseline and after 3 and 12 months. After the first endoscopy, all subjects were treated with omeprazole 40 mg daily for 12 months. After randomization, 27 of the 48 H. pylori -positive patients additionally received eradication therapy. In 182 hematoxylin-eosin-stained specimens, which were of sufficient quality, the proportions (volume percentages) of glands (VPGL), stroma (VPS), infiltrate (VPI), and intestinal metaplasia in the glandular zone of the antrum mucosa were measured using a point-counting method. In these specimens, mucosal atrophy was assessed by two experienced gastrointestinal tract pathologists (E.B. and J.L.) according to the updated Sydney classification as either nonatrophic mucosa (n = 47) or as mild (n = 29), moderate (n = 50), or marked (n = 56) atrophy. In addition, a group of 23 cases with difficult-to-classify grades of atrophy were included. Results: The mean VPGL decreased with increasing Sydney grades of atrophy (p < 0.001), while the mean VPS and VPI increased (both p < 0.001). After H. pylori eradication, even the cases with the lowest VPGL regressed to normal levels. Conclusions: Overall, a low VPGL correlates with increasing grades of antrum mucosal atrophy. The present data indicate that gastric mucosal atrophy is reversible, since almost all cases showed regression of VPGL after H. pylori eradication. The cases with difficult-to-classify grades of atrophy showed significantly lower VPGLs and higher VPIs than the reference cases. Copyright © 2004 S. Karger AG, Basel [ABSTRACT FROM AUTHOR]
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- 2004
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169. Quantitative Assessment of Gastric Corpus Atrophy in Subjects Using Omeprazole: A Randomized Follow-Up Study.
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Van Grieken, Nicole C. T., Meijer, Gerrit A., Weiss, Marjan M., Bloemena, Elisabeth, Lindeman, Jan, Baak, Jan P. A., Meuwissen, Stefan G. M., and Kuipers, Ernst J.
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GASTRIC mucosa ,OMEPRAZOLE ,HELICOBACTER pylori ,STOMACH cancer ,MORPHOLOGY ,DISEASES - Abstract
OBJECTIVES: Atrophy of the gastric mucosa most frequently results from chronic Helicobacter pylori infection and is a risk factor for the development of gastric cancer. Profound acid suppression has been suggested to accelerate the onset of gastric mucosal atrophy. The aim of the present study was to evaluate the effects of H. pylori eradication and acid inhibition by omeprazole on gastric atrophy by means of quantitative analysis of tissue morphology. METHODS: Corpus biopsy specimens were obtained during endoscopy in 71 gastroesophageal reflux disease (GERD) patients at baseline and after 3 and 12 months. A total of 48 subjects were H. pylori positive and 23 were H. pylori negative. All subjects received omeprazole 40 mg once daily after the first endoscopy for 12 months. After randomization, 27 of the 48 H. pylori-positive patients also received eradication therapy. In hematoxylin and eosin-stained slides the volume percentages of glands (VPGL), volume percentages of stroma (VPS), and volume percentages of infiltrate (VPI) were measured in the glandular zone of the mucosa. The results were evaluated by computerized morphometric analysis. RESULTS: In the eradication group, the mean VPGL increased from 63.0% to 67.7% and 71.5% after 3 and 12 months (p < 0.001). respectively. The mean VPS and VPI decreased from 33.1% and 4.0% to 29.3% and 3.0% and to 26.4% and 2.1% (p < 0.001 and p = 0.04), respectively. Patients with the lowest VPGL at baseline showed the largest increases of VPGL after eradication treatment as compared to patients with high a VPGL at baseline. In the H. pylori-persistent group the VPI showed a significant increase (p = 0.01), and in the H. pylori-negative group VPGL increased significantly from 71.9% to 75.2% (p = 0.03) after 12 months. CONCLUSIONS: Eradication of H. pylori leads to restitution of the volume percentage of glandular epithelium to normal levels, even during treatment with proton pump inhibitors. Whether this effect can also be seen in patients with marked atrophy needs further investigation. [ABSTRACT FROM AUTHOR]
- Published
- 2001
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170. Relationships between vascularization and proliferation in invasive breast cancer.
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Beliën, Jeroen A. M., van Diest, Paul J., and Baak, Jan P. A.
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- 1999
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171. D2-40/p63 defined lymph vessel invasion has additional prognostic value in highly proliferating operable node negative breast cancer patients
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Gudlaugsson, Einar, Skaland, Ivar, Undersrud, Erling, Janssen, Emiel AM, Søiland, Håvard, and Baak, Jan PA
- Abstract
Phosphohistone H3 assessed proliferation has strong prognostic value. Lymph vessel invasion by D2-40 is also prognostic, but D2-40+ myoepithelial expression in small ducts completely filled by solid-pattern ductal carcinoma in situ can mimic lymphovascular invasion. As myoepithelial cells are also p63 positive, we have investigated whether lymph vessel invasion identified by combined D2-40/p63 is stronger prognostically than by D2-40 alone, and whether it has independent prognostic value to phosphohistone H3. In 240 operable T1–2N0M0node negative invasive breast cancer patients <71 years, phosphohistone H3 was determined by quantitative immunohistochemistry and lymph vessel invasion by D2-40/p63 double immunostaining. Correlation analysis between the clinico-pathologic factors and lymph vessel invasion, and univariate and multivariate prognostic survival analysis were performed. With median 117 (range: 12–192) months follow-up, 36 patients (15%) developed and 28 (12%) died of distant metastases. Ten of the 61 patients (16%) with cancer cells surrounded by D2-40 were p63 positive and none of these ‘false lymph vessel invasion’ recurred. D2-40+/p63− lymph vessel invasion occurred in 51/239 (21%) cases and correlated with grade, mitotic activity index, phosphohistone H3, ER, cytokeratin14, and HER2. D2-40+/p63− lymph vessel invasion was strongly prognostic, but far more in women ≥55 than those <55 years (P<0.0001 and 0.04). With multivariate analysis, phosphohistone H3 proliferation was the strongest single prognosticator. Lymph vessel invasion had additional prognostic value to phosphohistone H3 only in women ≥55. This group of patients, without/with lymph vessel invasion, had 10-year survival rates of 83 and 50%, respectively (hazard ratio-lymph vessel invasion=3.0, P=0.04; hazard ratio-phosphohistone H3=6.9, P=0.002). Where age was <55 years, only phosphohistone H3 had independent prognostic value. Combinations of other features had no additional value. In conclusion, T1–2N0M0invasive breast cancer patients ≥55 years with phosphohistone H3≥13, D2-40+/p63− defined lymph vessel invasion identifies a subgroup with a high risk of distant metastases.
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- 2011
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172. Use of computerized morphometric analyses of endometrial hyperplasias in the prediction of...
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Dunton, Charles J. and Baak, Jan P.A.
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UTERINE cancer ,HYPERPLASIA - Abstract
Focuses on whether computerized morphometric analysis is predictive of coexistent cancer in uteri that show endometrial hyperplasia in curettings or biopsy specimens. Study design; Correlation between curettings diagnosis and hysterectomy diagnosis.
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- 1996
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173. Quantitative Determination of Factors Contributing to Doxorubicin Resistance in Multidrug-Resistant Cells.
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Schuurhuis, Gerrit J., Broxterman, Henricus J., Cervantes, Andres, van Heijningen, Theodorus H. M., de Lange, Johannes H. M., Baak, Jan P. A., Pinedo, Herbert M., and Lankelma, Jan
- Abstract
There is a large discrepancy between the changes in drug accumulation and the changes in drug cytotoxicity that accompany development of anthracycline resistance in multidrug-resistant cells. In our study, a quantitative relationship has been established between reversal of multidrug resistance by resistance modifiers and a concomitant decrease in intracellular levels of doxorubicin measured at equitoxic concentrations (IC) in CHC5 and 2780 multidrug-resistant cells. (IC = concentration required for 50% growth inhibition.) We have demonstrated that resistance modifiers like verapamil and Ro 11–2933/001 act by increasing the effectiveness of intracellular doxorubicin, apparently by inducing redistribution of the drug from the cytoplasm to the nucleus of a multidrug-resistant cell, as shown by quantitative fluorescence microscopy. At complete reversal of resistance, as measured directly or inferred by extrapolation, the amount of intracellular doxorubicin at the IC as well as the ratio of nuclear doxorubicin to cytoplasmic doxorubicin were the same as those in sensitive cells. These results offer an explanation for the frequently observed discrepancies between drug accumulation and cytotoxicity and also show quantitatively that a decrease in drug accumulation and a change in intracellular drug distribution together are the only determinants of doxorubicin resistance in the multidrug-resistant cells studied. [J Natl Cancer Inst 81: 1887–1892, 1989] [ABSTRACT FROM PUBLISHER]
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- 1989
174. The multi-center morphometric mammary carcinoma project (MMMCP) in the netherlands: Value of morphometrically assessed proliferation and differentiation.
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Baak, Jan P. A., Van Diest, Paul J., Benraadt, Tineke, Matze-Cok, Erna, Brugghe, Jane, Schuurmans, Leonard T., and Littooy, J. J.
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- 1993
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175. Nuclear Morphometry in the Determination of the Prognosis of Marked Atypical Endometrial Hyperplasia.
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Ausems, Emiel W. M. A., van der Kamp, Jan-Kees, and Baak, Jan P. A.
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- 1985
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176. The Prognostic Value of Morphometry in Ovarian Epithelial Tumors of Borderline Malignancy.
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Baak, Jan P. A., Fox, Harold, Langley, Frederick A., and Buckley, C. Hilary
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- 1985
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177. Prognostic value of quantitative pathologic features and DNA content in individual patients with stage I endometrial adenocarcinoma.
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van der Putten, Hans W. H. M., Baak, Jan P. A., Koenders, Ton J. M., Kurver, Piet H. J., Stolk, Hans G., Stolte, Lou A. M., van der Putten, H W, Baak, J P, Koenders, T J, Kurver, P H, Stolk, H G, and Stolte, L A
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- 1989
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178. The percentage of aneuploid cells is significantly correlated with survival in accurately staged patients with stage 1 resected squamous cell lung cancer and long-term follow up.
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Van Bodegom, Peter C., Baak, Jan P. A., Galen, Conny Stroet-Van, Schipper, Nel W., Wisse-Brekelmans, Els C. M., Vanderschueren, Roland G. J. R. A., Wagenaar, Sjoerd S. C., van Bodegom, P C, Baak, J P, Stroet-van Galen, C, Schipper, N W, Wisse-Brekelmans, E C, Vanderschueren, R G, and Wagenaar, S S
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- 1989
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179. Proliferation markers in tumours: interpretation and clinical value.
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van Diest, Paul J., Brugal, Gerard, and Baak, Jan P. A.
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- 1998
180. Nuclear morphometry as an important prognostic factor in stage I renal cell carcinoma.
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Tosi, Piero, Luzi, Pietro, Baak, Jan P. A., Miracco, Clelia, Santopietro, Rosa, Vindigni, Carla, Mattei, Fabio Maria, Acconcia, Angelo, Massai, Maria Rita, Tosi, P, Luzi, P, Baak, J P, Miracco, C, Santopietro, R, Vindigni, C, Mattei, F M, Acconcia, A, and Massai, M R
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- 1986
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181. Malignant Brenner tumor. A histologic, morphometrical, immunohistochemical, and ultrastructural study.
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Seldenrijk, Cornelis A., Willig, Arjan P., Baak, Jan P. A., Kühnel, Radka, Rao, B. Ramanath, Burger, Curt W., Van Der Harten, Johan J., Dijkhuizen, Gerard H., Meijer, Chris J. L. M., Seldenrijk, C A, Willig, A P, Baak, J P, Kühnel, R, Rao, B R, Burger, C W, van der Harten, J J, Dijkhuizen, G H, and Meijer, C J
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- 1986
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182. The value of morphometry to classic prognosticators in breast cancer.
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Baak, Jan P. A., Van Dop, Herman, Kurver, Piet H. J., Hermans, Jo, Baak, J P, Van Dop, H, Kurver, P H, and Hermans, J
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- 1985
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183. Architectural and nuclear morphometrical features together are more important prognosticators in endometrial hyperplasias than nuclear morphometrical features alone.
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Baak, Jan. P. A., Nauta, J. J. P., Wisse-Brekelmans, E. C. M., and Bezemer, P. D.
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- 1988
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184. Biologic profiling of lymph node negative breast cancers by means of microRNA expression
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Janssen, Emiel A M, Slewa, Aida, Gudlaugsson, Einar, Jonsdottir, Kristin, Skaland, Ivar, Søiland, Håvard, and Baak, Jan P A
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Breast cancer is a heterogeneous disease. Different subgroups can be recognized on the basis of the steroid receptors, HER-2, cytokeratin expression and proliferation patterns. As a result of mRNA-profiling studies, five major groups can be recognized, of which the triple-negative and basal-like tumors have the worst prognosis. Many of these tumors have a high proliferation that has the strongest prognostic value in node negative breast cancer. In the current study we analyzed the microRNA pattern in 103 lymph node negative breast cancers and compared these profiles with different biological characteristics and clinicopathological features. Unsupervised hierarchical cluster analysis divides the patients into four main groups, of which the basal-like/triple-negative group is the most prominent (11% of all cases), the luminal A cancers containing the Her2 negative and estrogen receptor/progesterone receptor-positive tumors is the largest group (57%), and the group of luminal B (32%) is more heterogeneous and contains the Her2 positive/estrogen receptor-negative patients as well. The highest overall classification values by analysis of variance followed by cross validation (leave one sample out and reselect genes) were found for cytokeratin 5 and 6, triple-negative and estrogen receptor, with 97, 90 and 90% accuracy, respectively. MiR-106b gene is prominent in all of these signatures and correlates strongest with high proliferation. Other interesting observations are the presence of several microRNAs (miR532-5p, miR-500, miR362-5p, and miR502-3p) located at Xp11.23 in cancers with a triple-negative signature, and the upregulation of several miR-17 cluster members in estrogen receptor-negative tumors. The current study shows that estrogen receptor negativity and cytokeratin 5 and 6 expression are important, and specific biological processes in lymph node negative breast cancer, as microRNA signatures are strongest in these subgroups.
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- 2010
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185. Local immune response in the microenvironment of CIN2–3 with and without spontaneous regression
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Øvestad, Irene Tveiterås, Gudlaugsson, Einar, Skaland, Ivar, Malpica, Anais, Kruse, Arnold-Jan, Janssen, Emiel A M, and Baak, Jan P A
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Fifteen to thirty percent of cases with histologically confirmed CIN2–3 in cervical biopsies regress spontaneously (ie, show CIN1 or less in the follow-up cervical cone). The balance between immune-reactive cells from the host and high-risk human papillomavirus (hrHPV) genotypes may provide a biological explanation for this phenomenon. We retrospectively studied 55 cases of CIN2–3 in a cervical biopsy with subsequent cervical cone to assess whether hrHPV genotypes (by AMPLICOR and Linear Array tests) CD4, CD8, CD25, CD138 and Foxp3 cells (by quantitative immunohistochemistry) in the cervical biopsies can predict regression (defined as CIN1 or less in the follow-up cone biopsy). Eighteen percent of the CIN2–3 cases regressed (median biopsy–cervical cone time interval: 12.0 weeks, range: 5.0–34.1 weeks). HPV-16 correlated with low CD8+and high CD25+. None of the regressing CIN2–3 lesions contained HPV-16. The regressing CIN2–3 lesions had lower numbers of stromal CD138+and higher numbers of stromal CD8+cells; higher stromal and intra-epithelial ratios of CD4+/CD25+cells; higher ratios of CD8+/CD25+cells and lower ratios of CD8+/CD4+, CD138+/Foxp3+and CD25+/Foxp3+cells in the stroma. With multivariate survival analysis, stromal CD8+cell numbers, CD4+/CD25+cell ratios and CD138+cell numbers are found to be independent regression predictors. In conclusion, in non-HPV-16 CIN2–3 lesions, assessing stromal immune cells can be a useful prognostic indicator of regression or persistence.
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- 2010
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186. Phosphohistone H3 expression has much stronger prognostic value than classical prognosticators in invasive lymph node-negative breast cancer patients less than 55 years of age
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Skaland, Ivar, Janssen, Emiel A M, Gudlaugsson, Einar, Klos, Jan, Kjellevold, Kjell H, Søiland, Håvard, and Baak, Jan P A
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The proliferation factor mitotic activity index is the strongest prognostic factor in early breast cancer, but it may lack reproducibility. We analyzed the prognostic value of phosphohistone H3, a marker of cells in late G2and M phase, measuring highly standardized immunohistochemical nuclear phosphohistone H3 expression by subjective counts and digital image analysis. Expression was compared with classical clinico-pathologic prognostic variables and the mitotic activity index in 119 node-negative invasive breast cancers in patients less than 55 years old treated with adjuvant systemic chemotherapy with long-term follow-up (median 168 months). Nineteen patients (16%) developed distant metastases and 16 (13%) died. Strong phosphohistone H3 expression occurred preferentially in the peripheral growing front; counts were highly reproducible between observers (R=0.92) and highly consistent with digital image analysis (R=0.96). Phosphohistone H3 correlated (P<0.05) with tumor diameter, estrogen receptor, carcinoma grade, and mitotic activity index. Phosphohistone H3 values were systematically (80%) higher than the mitotic activity index. Receiver-operating curve analysis objectively showed that phosphohistone H3 <13 (n=53; 45% of all cases) vs phosphohistone H3≥13 (n=66; 55% of all cases) was the strongest prognostic threshold, with 20-year recurrence-free survival of distant metastases of 96 and 58%, respectively (P=0.0002, HR=9.6). Mitotic activity index was the second strongest prognostic variable (P=0.003, HR=3.9). In multivariate analysis, phosphohistone H3 <13 vs≥13 exceeded the prognostic value of the mitotic activity index. None of the other classical prognostic factors examined offered prognostic value additional to phosphohistone H3. Phosphohistone H3 is by far the strongest prognostic variable in early invasive node-negative breast cancer patients less than 55 years old with long-term follow-up.Modern Pathology (2007) 20, 1307–1315; doi:10.1038/modpathol.3800972; published online 5 October 2007
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- 2007
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187. Benign Endometrial Hyperplasia Sequence and Endometrial Intraepithelial Neoplasia
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Mutter, George L., Zaino, Richard J., Baak, Jan P.A., Bentley, Rex C., and Robboy, Stanley J.
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Endometrial "hyperplasia," as currently diagnosed, includes the changes caused by an abnormal hormonal state and those caused by a separate category of monoclonal premalignant disease. The appearance of the disease in these 2 functional categories is discontinuous, permitting more specific diagnosis of the condition using the terms "benign endometrial hyperplasia" and "endometrial intraepithelial neoplasia" (EIN), respectively. Benign endometrial hyperplasia involves the entire endometrial compartment and, with protracted estrogen exposure, shows the progressive development of cysts, remodeled glands, vascular thrombi, and stromal microinfarcts. They are best construed as a sequence of changes whereby the appearance at any single time point is uniquely dependent on the preceding combination and the duration of hormonal exposures. In contrast, the premalignant clone of an EIN lesion is characteristically offset from the background endometrium by its altered cytology and crowded architecture. The use of an internal standard for cytology assessment, combined with the distinctive topography of a clonal process, enables the diagnosis of EIN lesions with a long-term cancer risk 45-fold greater than that of their benign endometrial hyperplasia counterparts. The resolution of hormonal and premalignant subsets of traditional "endometrial hyperplasias" is possible using redefined diagnostic criteria, enabling patient therapy to be appropriately matched with the underlying disease mechanisms.
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- 2007
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188. The molecular genetics and morphometry‐based endometrial intraepithelial neoplasia classification system predicts disease progression in endometrial hyperplasia more accurately than the 1994 World Health Organization classification system
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Baak, Jan P., Mutter, George L., Robboy, Stanley, van Diest, Paul J., Uyterlinde, Anne M., Ørbo, Anne, Palazzo, Juan, Fiane, Bent, Løvslett, Kjell, Burger, Curt, Voorhorst, Feja, and Verheijen, René H.
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The objective of this study was to compare the accuracy of disease progression prediction of the molecular genetics and morphometry‐based Endometrial Intraepithelial Neoplasia (EIN) and World Health Organization 1994 (WHO94) classification systems in patients with endometrial hyperplasias.A multicenter, multivariate analysis was conducted on 477 patients with endometrial hyperplasia who were required to have a 1‐year minimum disease‐free interval from the time of the index biopsy (1–18 years of follow‐up). The results from that analysis were compared with the results from 197 patients who had < 1 year of follow‐up.Twenty‐four of 477 hyperplasias (5.0%) progressed to malignant disease over an average of 4 years (maximum, 10 years). According to the WHO94 classification, 16 of 123 atypical hyperplasias (13%) and 8 of 354 nonatypical hyperplasias (2.3%) progressed (hazard ratio [HR] = 7). Twenty‐two of 118 EINs (19%) and 2 of 359 non‐EINs (0.6%) progressed (HR = 45). EIN was prognostic within each WHO94 subcategory. Progression rates were 3% in simple hyperplasias, 22% in complex hyperplasias, 17% in simple atypical hyperplasias, and 38% in complex atypical hyperplasias with EIN, compared with progression rates of 0.0–2.0% in all hyperplasias if EIN was absent. EIN detected precancerous lesions (sensitivity, 92%) better than WHO94 atypical hyperplasias collectively (67%) or complex atypical hyperplasias alone (46%). In a Cox regression analysis, EIN was the strongest prognostic index of future endometrial carcinoma. The same was true for patients with < 1 year of follow‐up (HR for EIN, atypical hyperplasia, and complex atypical hyperplasia: 58, 7, and 8, respectively).The EIN classification system predicted disease progression more accurately than the WHO94 classification and identified many women with benign changes that would have been regarded as high risk according to the WHO94 classification system. Cancer 2005. © 2005 American Cancer Society.
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- 2005
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189. Barrett's adenocarcinomas resemble adenocarcinomas of the gastric cardia in terms of chromosomal copy number changes, but relate to squamous cell carcinomas of the distal oesophagus with respect to the presence of high‐level amplifications
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Weiss, Marjan M, Kuipers, Ernst J, Hermsen, Mario AJA, van Grieken, Nicole CT, Offerhaus, Johan, Baak, Jan PA, Meuwissen, Stefan GM, and Meijer, Gerrit A
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Three different cancers predominantly occur at the gastro‐oesophageal junction: squamous cell carcinomas of the distal oesophagus, adenocarcinomas of the distal oesophagus (Barrett's carcinomas), and adenocarcinomas of the gastric cardia. The aim of the present study was to investigate how, and to what extent, Barrett's carcinoma differs from adenocarcinoma of the gastric cardia on the one hand and squamous cell carcinoma of the distal oesophagus on the other, with respect to chromosomal aberrations and related gene expression. The present study analysed 14 squamous cell carcinomas, 24 Barrett's carcinomas, and 16 carcinomas of the gastric cardia. Comparative genomic hybridization revealed chromosomal abnormalities in all cases. Typical chromosomal aberrations for the squamous cell carcinoma type were gains at 3q and 11q13, and losses at 3p, 4q, 9p, 11q, and 13q. In contrast, typical copy number changes for both cardiac and Barrett's adenocarcinomas were gains at 2q, 7p, and 13q, and losses at 17p. High‐level amplification occurred in all three groups, but its frequency in the cardiac carcinomas was lower than in the other two groups. In conclusion, squamous cell carcinomas are characterized by chromosomal aberrations which are distinct from those seen in carcinomas of the gastric cardia and in Barrett's adenocarcinomas. With respect to Barrett's cancer, the chromosomal aberrations more closely reflect the adenocarcinoma phenotype than the squamous origin of the epithelium. Copyright © 2002 John Wiley & Sons, Ltd.
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- 2003
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190. Reproducibility and Prognostic Variability of Grade and Lamina Propria Invasion in Stages Ta, T1 Urothelial Carcinoma of the Bladder
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BOL, MARCO G.W., BAAK, JAN P.A., BUHR-WILDHAGEN, SUSANNE, KRUSE, ARNOLD-JAN, KJELLEVOLD, KJELL H., JANSSEN, EMIEL A.M., MESTAD, ODDVAR, and ØGREID, PER
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We assessed the reproducibility and prognostic variability of grade and lamina propria invasion in stages Ta, T1 urothelial carcinoma of the bladder.
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- 2003
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191. The framework of pathology: good laboratory practice by quantitative and molecular methods
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Baak, Jan PA
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Combined confocal laser scan microscopy (CLSM) and Fourier analysis (FA) by non‐pathologists of dermal collagen bundle orientation recently gave results superior to subjective evaluation by experts. According to Good Laboratory Practice (GLP) criteria, combined CLSM/FA has not yet been adequately tested to replace current collagen evaluation, but this will not take long. Non‐pathologists (clinicians) will then have taken over a laboratory test historically belonging to pathology. A general trend in this direction may develop, because pathologists seem not always to care enough about clinical significance, reproducibility and prognostic value, and new demands for innovative methods. Quantitative image analysis (QIA) and molecular methods are reproducible, inexpensive, and easy to perform; they often have greater value than classical evaluations and their cost–benefit ratio is good. However, their acceptance is not as widespread as one would expect and theoretical reasons which have been advanced do not provide a satisfactory explanation. A formal implementation study was therefore performed, in which an attempt was made to modernize a classical pathology laboratory. An external customer satisfaction investigation showed that 96% of the clinicians were ‘very satisfied’ (the highest rating possible) with the completed innovations, contrasting with low satisfaction at the beginning. Lack of primary innovative leadership among pathologists was judged to be the dominant cause preventing implementation. Pathologists should focus on carefully reacting to new clinical needs, using GLP criteria. Reproducibility and predictive accuracy should be major themes in any pathology practice. Copyright © 2002 John Wiley & Sons, Ltd.
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- 2002
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192. Confocal DNA cytometry: A contour-based segmentation algorithm for automated three-dimensional image segmentation
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Beliën, Jeroen A.M., Ginkel, Hielke A.H.M. van, Tekola, Paulos, Ploeger, Lennert S., Poulin, Neal M., Baak, Jan P.A., and Diest, Paul J. van
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Confocal laser scanning microscopy (CLSM) presents the opportunity to perform three-dimensional (3D) DNA content measurements on intact cells in thick histological sections. So far, these measurements have been performed manually, which is quite time-consuming. In this study, an intuitive contour-based segmentation algorithm for automatic 3D CLSM image cytometry of nuclei in thick histological sections is presented. To evaluate the segmentation algorithm, we measured the DNA content and volume of human liver and breast cancer nuclei in 3D CLSM images. A high percentage of nuclei could be segmented fully automatically (e.g., human liver, 92%). Comparison with (time-consuming) interactive measurements on the same CLSM images showed that the results were well correlated (liver, r = 1.00; breast, r = 0.92). Automatic 3D CLSM image cytometry enables measurement of volume and DNA content of large numbers of nuclei in thick histological sections within an acceptable time. This makes large-scale studies feasible, whereby the advantages of CLSM can be exploited fully. The intuitive modular segmentation algorithm presented in this study detects and separates overlapping objects, also in two-dimensional (2D) space. Therefore, this algorithm may also be suitable for other applications. Cytometry 49:1221, 2002. © 2002 Wiley-Liss, Inc.
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- 2002
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193. Genetic Alterations in Childhood Medulloblastoma Analyzed by Comparative Genomic Hybridization
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Michiels, Erna M.C., Weiss, Marjan M., Hoovers, Jan M.N., Baak, Jan P.A., Voûte, P. A., Baas, Frank, and Hermsen, Mario A.J.A.
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Despite intensive therapy, the survival of children with medulloblastoma remains disappointing. Moreover, children who survive are affected by serious long-term sequelae of treatment that impair their quality of life. In search of chromosomal aberrations indicative of sites involved in oncogenic transformation and in an attempt to find reliable prognostic markers, the authors analyzed 15 medulloblastomas by comparative genomic hybridization. All neoplasms showed chromosomal abnormalities. The most frequent losses were 17p (7/15 tumors), 8p and 11p (6/15), 10p, 11q, 16q, and 20q (5/15), and 20p (4/15). Gains were recurrently found at 7q (10/15 tumors), 17q and 18q (9/15 tumors), 7p and 13q (7/15), 18p (6/15), and 1q, 4q, 6q, and 9p (5/15 tumors). Four tumors showed loss of 17p together with gain of 17q, suggesting an isochromosome 17q. High-level amplifications were seen at 1p34, 5p15, 13q34, and 18p11 (one tumor each), and at 2p15 in two tumors, one of which was proven to be N-Myc amplification. The overall pattern of alterations found in this study confirms the findings of other studies and adds two novel regions with chromosomal gains, at 13q and 18q. Previous reports on the relation between 17q gain and survival could not be confirmed, whereas amplification of N-mycor L-mycseems to indicate poor clinical outcome.
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- 2002
194. Global Expression Changes of Constitutive and Hormonally Regulated Genes during Endometrial Neoplastic Transformation
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Mutter, George L., Baak, Jan P.A., Fitzgerald, Jeffrey T., Gray, Robert, Neuberg, Donna, Kust, Gregory A., Gentleman, Robert, Gullans, Steven R., Wei, Lee-Jen, and Wilcox, Marsha
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Objective.Endometrioid endometrial carcinoma is caused by a combination of mutational events and hormonal factors. We used large-scale messenger RNA expression analysis to discover genes that distinguish neoplastic transformation and examine the patterns of tumor expression of those genes which are normally regulated during the menstrual cycle.
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- 2001
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195. Comparative Genomic Hybridization of Microdissected Familial Ovarian Carcinoma: Two Deleted Regions on Chromosome 15q Not Previously Identified in Sporadic Ovarian Carcinoma.
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Zweemer, Ronald P., Ryan, Andy, Snijders, Antoine M., Hermsen, Mario A. J. A., Meijer, Gerrit A., Belier, Uziel, Menko, Fred H., Jacobs, Ian J., Baak, Jan P. A., Verheijen, René H. M., Kenemans, Peter, and van Diest, Paul J.
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- 2001
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196. Prognostic value of morphometry in patients with normal breast tissue or usual ductal hyperplasia of the breast
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Mommers, Ellen C.M., Page, David L., Dupont, William D., Schuyler, Peggy, Leonhart, Angelique M., Baak, Jan P.A., Meijer, Chris J.L.M., and Diest, Paul J. Van
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Women with usual ductal hyperplasia have a relative risk of 1.61.9 of subsequent breast cancer development. This slightly increased risk is generally not considered sufficiently high to justify (chemo)preventive therapy. It is therefore important to identify high-risk ductal hyperplastic lesions that would benefit from such a treatment. Nuclear morphometric features have been shown in previous work to be useful for objectively describing morphologic features associated with high risk in (pre)invasive breast lesions. The aim of this study was to evaluate whether such morphometric features can also predict subsequent invasive cancer development in patients with the common pattern of usual ductal hyperplasia or a normal breast biopsy. The present case-control study included 423 women with normal breast biopsies (n = 89) or biopsies containing usual ductal hyperplasia (n = 334). Of these 423 women, 132 developed invasive breast cancer during follow-up (mean 16.7 ± 7.0 years). On the original hematoxylin and eosin-stained sections, nuclear morphometry was performed with a digitizing video overlay system, and mitotic and apoptotic indices were assessed. Patients with mean nuclear feature values for area, perimeter, diameter or longest axis above the 75th percentile had 1.61.7 times the breast cancer risk of women with mean nuclear feature values below this value. Pairwise combinations of these features yielded slightly higher cancer risks for the fourth quartile patients, with the highest risk (1.9) for patients with SD of nuclear area and perimeter values above the 75th percentile. The number of apoptotic or mitotic cells had no prognostic value for patients with apparently normal tissue or usual ductal hyperplasia. Our results give a first indication that normal breast tissue or usual ductal hyperplasia harbor nuclear morphologic changes that, when assessed by morphometry, may be used to predict breast cancer development. It is worthwhile studying this further in independent groups of patients with long-term follow-up. © 2001 Wiley-Liss, Inc.
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- 2001
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197. Similarity in expression of cell cycle proteins between in situand invasive ductal breast lesions of same differentiation grade
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Mommers, Ellen C. M., Leonhart, Angelique M., Falix, Farah, Michalides, Rob, Meijer, Chris J. L. M., Baak, Jan P. A., and Diest, Paul J. van
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There is increasing evidence that there are different progression routes leading to invasive breast cancer, depending on histology and differentiation grade. The aim of this study was to determine alterations in the expression of proteins involved in proliferation and apoptosis in non‐invasive and invasive ductal breast lesions. Immunohistochemistry was performed on 106 usual ductal hyperplasias (UDH), 61 DCIS lesions and 53 invasive ductal breast carcinomas. Increased proliferation (Ki67), overexpression of cyclin D1, HER‐2/neu, p21 and p53, and decreased expression of bcl‐2 and p27 could already be found in UDH. Significant differences between UDH and DCIS lesions were found for only one protein when UDH was compared with well‐differentiated DCIS (p27), for three proteins when compared with intermediately differentiated DCIS (p21, cyclin D1, Ki‐67), and for all proteins when compared with poorly‐differentiated DCIS. Comparing DCIS with invasive lesions of same differentiation grade, proliferation was elevated in the invasive lesions. Altered expression of the other proteins was in general only slightly increased in the invasive lesion compared with DCIS. The number of proteins with altered expression per lesion was highest in poorly‐differentiated lesions and was comparable between DCIS and invasive cancer of the same differentiation grade. In conclusion, the biggest changes in expression of these proliferation and apoptosis related proteins appear to occur during the transition from hyperplasia to DCIS; they probably play a minor role in the transition from DCIS to invasive breast lesion of same differentiation grade. Well‐differentiated in situand invasive breast lesions share many of the aberrations in expression of these proteins, as do poorly‐differentiated in situand invasive lesions. However, there are many differences between the well and poorly‐differentiated lesions. This further supports the existence of different progression routes leading to breast cancer. Copyright © 2001 John Wiley & Sons, Ltd.
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- 2001
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198. New chromosomal regions with high‐level amplifications in squamous cell carcinomas of the larynx and pharynx, identified by comparative genomic hybridization
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Hermsen, Mario, Alonso Guervós, Marta, Meijer, Gerrit, Baak, Jan, van Diest, Paul, Alvarez Marcos, Cesar, and Sampedro, Andrés
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Squamous cell carcinomas of the head and neck generally exhibit complex karyotypes. To gain better knowledge of the changes in the subgroup of laryngeal and pharyngeal squamous cell carcinoma, chromosomal gains and losses were investigated in 42 predominantly late‐stage tumours, using comparative genomic hybridization. On average, 11.2 gains and 6.8 losses were found. Gains were detected in high frequencies at 1q, 3q, 5p, 7q, 8q, 11q13, 17q, and 18p, and losses at 3p, 4p, 5q, 11qter, and 18q. Neither the number nor the type of abnormalities, nor the occurrence of specific chromosome changes, was found to be related to DNA ploidy, tumour stage, or degree of differentiation. Apart from low‐level gains, many high‐level amplifications were identified, in particular 3q24‐qter (15 cases). Other regions recurrently involved were 11q13 (7 cases), 18p (5 cases), 18q11.2 (4 cases), and 8q23–24 and 11q14–22 (3 cases). Many of these amplified regions have not been reported before. Over half of all loci harbour genes coding for growth factors and growth factor receptors, suggesting an important role for such genes in squamous cell tumourigenesis and in the progression of late‐stage tumours. Copyright © 2001 John Wiley & Sons, Ltd.
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- 2001
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199. Expression of Growth Factors, Growth Factor Receptors and Apoptosis Related Proteins in Invasive Breast Cancer: Relation to Apoptotic Rate
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de Jong, Johannes, van Diest, Paul, van der Valk, Paul, and Baak, Jan
- Abstract
Purpose. To assess the relation between growth factors, growth-factor receptors, p53, bcl-2 and bax expression, and the rate of apoptosis in invasive breast cancer patients. Materials and methods. Tumors from 45 patients were assessed by immunohistochemistry for expression patterns of five growth factors and their receptor platelet-derived growth factor A chain (PDGF-AA) and PDGF-receptor alpha (PDGFαR), PDGF-BB and PDGFβR, transforming growth-factor alpha (TGFα) and its receptor-epidermal growth factor receptor (EGFR) and vascular-endothelial growth factor (VEGF) and its receptors vascular-endothelial growth factor receptor I (FLT-1) and vascular-endothelial growth factor receptor II (FLK-1/KDR), two growth-inhibiting factors; transforming-growth factor beta 1 (TGFβ1) and TGFβ2 and their receptor couple TGFβ receptor I (TGFβR-I) and TGFβR-II, and basic-fibroblast growth factor (bFGF). Besides, the expression patterns of the bcl-2, bax and p53 gene products were investigated. Expression patterns were correlated to the number of apoptotic cells assessed by light microscopy. Results. PDGF-BB and bFGF showed a positive correlation with the AI (p=0.006 and p=0.030, respectively). EGFR expression was associated with a high number of apoptotic cells but did not reach significance (p=0.10). None of the other individual growth factors, growth-inhibiting factors or receptors showed a significant relation with the AI. The presence of a possible auto- or paracrine loop of the TGFα/EGFR combination was associated with a high number of apoptotic cells but did not reach significance (p=0.20). PDGF-AA, bFGF and EGFR expression showed a significant relation to p53 overexpression. TGFβ2 expression showed an inverse correlation with p53 overexpression. Conclusion. We found an association between several growth factors and growth-factor receptors with number of apoptotic cells. This underlines the importance of growth factors and their receptors not just in proliferation, but also, directly and/or indirectly, in regulating the rate of apoptosis in invasive breast cancer. Growth factors and their receptors may therefore be useful as targets of anti-cancer therapy by inducing apoptosis or increasing the sensitivity of cells for chemo- or hormonal therapy induced apoptosis.
- Published
- 2001
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200. Cytogenetic characteristics of oral squamous cell carcinomas in Fanconi anemia
- Author
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Hermsen, Mario, Xie, Yan, Rooimans, Martin, Meijer, Gerrit, Baak, Jan, Plukker, John, Arwert, Fré, and Joenje, Hans
- Abstract
Fanconi anemia (FA) is an autosomal recessive syndrome with a marked predisposition to malignancies, in particular acute myeloid leukemia and squamous cell carcinoma of the oral cavity. We examined oral squamous cell carcinoma tissue from two FA patients (FA-A and FA-C) by comparative genomic hybridization. Both tumors, which were negative for human papilloma as well as Epstein-Barr viral sequences, showed multiple alterations with a high proportion of whole-arm chromosomal gains and losses. This combination of features as well as the sites involved in chromosomal breakage are very similar to what is typically observed in non-FA oral tumors. These results suggest that the process leading to early occurrence of oral cancer in FA patients follows a similar pathway as in non-FA cancer patients, which would support a caretaker function for FA genes in the protection against oral carcinogenesis. Since FA patients are uniquely hypersensitive to DNA cross-linking agents, while oral cancer in the general population is thought to be environmentally induced, these results also suggest that environmental DNA cross-linkers may be causally involved in oral carcinogenesis.
- Published
- 2001
- Full Text
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