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Coastal oceans are increasingly eutrophic, warm and acidic through the addition of anthropogenic nitrogen and carbon, respectively. Among the most sensitive taxa to these changes are scleractinian corals, which engineer the most biodiverse ecosystems on Earth. Corals' sensitivity is a consequence of their evolutionary investment in symbiosis with the dinoflagellate alga, Symbiodinium. Together, the coral holobiont has dominated oligotrophic tropical marine habitats. However, warming destabilizes this association and reduces coral fitness. It has been theorized that, when reefs become warm and eutrophic, mutualistic Symbiodinium sequester more resources for their own growth, thus parasitizing their hosts of nutrition. Here, we tested the hypothesis that sub-bleaching temperature and excess nitrogen promotes symbiont parasitism by measuring respiration (costs) and the assimilation and translocation of both carbon (energy) and nitrogen (growth; both benefits) within Orbicella faveolata hosting one of two Symbiodinium phylotypes using a dual stable isotope tracer incubation at ambient (26 °C) and sub-bleaching (31 °C) temperatures under elevated nitrate. Warming to 31 °C reduced holobiont net primary productivity (NPP) by 60% due to increased respiration which decreased host %carbon by 15% with no apparent cost to the symbiont. Concurrently, Symbiodinium carbon and nitrogen assimilation increased by 14 and 32%, respectively while increasing their mitotic index by 15%, whereas hosts did not gain a proportional increase in translocated photosynthates. We conclude that the disparity in benefits and costs to both partners is evidence of symbiont parasitism in the coral symbiosis and has major implications for the resilience of coral reefs under threat of global change.

The enzyme soluble adenylyl cyclase (sAC) is the most recently identified source of the messenger molecule cyclic adenosine monophosphate. sAC is evolutionarily conserved from cyanobacteria to human, is directly stimulated by [Formula: see text] ions, and can act as a sensor of environmental and metabolic CO2, pH, and [Formula: see text] levels. sAC genes tend to have multiple alternative promoters, undergo extensive alternative splicing, be translated into low mRNA levels, and the numerous sAC protein isoforms may be present in various subcellular localizations. In aquatic organisms, sAC has been shown to mediate various functions including intracellular pH regulation in coral, blood acid/base regulation in shark, heart beat rate in hagfish, and NaCl absorption in fish intestine. Furthermore, sAC is present in multiple other species and tissues, and sAC protein and enzymatic activity have been reported in the cytoplasm, the nucleus, and other subcellular compartments, suggesting even more diverse physiological roles. Although the methods and experimental tools used to study sAC are conventional, the complexity of sAC genes and proteins requires special considerations that are discussed in this chapter.

Comparative analysis of the expanding genomic resources for scleractinian corals may provide insights into the evolution of these organisms, with implications for their continued persistence under global climate change. Here, we sequenced and annotated the genome of Pocillopora damicornis, one of the most abundant and widespread corals in the world. We compared this genome, based on protein-coding gene orthology, with other publicly available coral genomes (Cnidaria, Anthozoa, Scleractinia), as well as genomes from other anthozoan groups (Actiniaria, Corallimorpharia), and two basal metazoan outgroup phlya (Porifera, Ctenophora). We found that 46.6% of P. damicornis genes had orthologs in all other scleractinians, defining a coral 'core' genome enriched in basic housekeeping functions. Of these core genes, 3.7% were unique to scleractinians and were enriched in immune functionality, suggesting an important role of the immune system in coral evolution. Genes occurring only in P. damicornis were enriched in cellular signaling and stress response pathways, and we found similar immune-related gene family expansions in each coral species, indicating that immune system diversification may be a prominent feature of scleractinian coral evolution at multiple taxonomic levels. Diversification of the immune gene repertoire may underlie scleractinian adaptations to symbiosis, pathogen interactions, and environmental stress.

The calcium carbonate skeletons of corals provide the underlying structure of coral reefs; however, the cellular mechanisms responsible for coral calcification remain poorly understood. In osteoblasts from vertebrate animals, a Na+/Ca2+ exchanger (NCX) present in the plasma membrane transports Ca2+ to the site of bone formation. The aims of this study were to establish whether NCX exists in corals and its localization within coral cells, which are essential first steps to investigate its potential involvement in calcification. Data mining identified genes encoding for NCX proteins in multiple coral species, a subset of which were more closely related to NCXs from vertebrates (NCXA). We cloned NCXA from Acropora yongei (AyNCXA), which, unexpectedly, contained a peptide signal that targets proteins to vesicles from the secretory pathway. AyNCXA subcellular localization was confirmed by heterologous expression of fluorescently tagged AyNCXA protein in sea urchin embryos, which localized together with known markers of intracellular vesicles. Finally, immunolabeling of coral tissues with specific antibodies revealed AyNCXA was present throughout coral tissue. AyNCXA was especially abundant in calcifying cells, where it exhibited a subcellular localization pattern consistent with intracellular vesicles. Altogether, our results demonstrate AyNCXA is present in vesicles in coral calcifying cells, where potential functions include intracellular Ca2+ homeostasis and Ca2+ transport to the growing skeleton as part of an intracellular calcification mechanism.

Coral reef systems can undergo rapid transitions from coral-dominated to macroalgae-dominated states following disturbances, and models indicate that these may sometimes represent shifts between alternative stable states. While several mechanisms may lead to alternate stable states on coral reefs, only a few have been investigated theoretically. We explore a model that illustrates that reduced vulnerability of macroalgae to herbivory as macroalgae grow and mature could be an important mechanism: when macroalgae are palatable to herbivores as juveniles, but resistant as adults, coral-dominated and algae-dominated states are bistable across a wide range of parameter space. We compare two approaches to global sensitivity analysis to rank the relative importance of the model parameters in determining the presence and magnitude of alternative stable states, and find that the two most influential parameters are the death rate of coral and the rate of maturation of algae out of the vulnerable stage. The Random Forest approach for global sensitivity analysis, recently adopted by ecologists, provides a more efficient method for ranking the relative importance of parameters than a variance-based approach that has been used frequently by computer scientists and engineers. Our results suggest that managing reefs to reduce chronic stressors that cause coral mortality and/or enhance the growth rates of algae can help prevent reefs from becoming locked in a macroalgae-dominated state.

Parrotfish (Scaridae) feed by biting stony corals. To investigate how their teeth endure the associated contact stresses, we examine the chemical composition, nano- and microscale structure, and the mechanical properties of the steephead parrotfish Chlorurus microrhinos tooth. Its enameloid is a fluorapatite (Ca5(PO4)3F) biomineral with outstanding mechanical characteristics: the mean elastic modulus is 124 GPa, and the mean hardness near the biting surface is 7.3 GPa, making this one of the stiffest and hardest biominerals measured; the mean indentation yield strength is above 6 GPa, and the mean fracture toughness is ∼2.5 MPa·m1/2, relatively high for a highly mineralized material. This combination of properties results in high abrasion resistance. Fluorapatite X-ray absorption spectroscopy exhibits linear dichroism at the Ca L-edge, an effect that makes peak intensities vary with crystal orientation, under linearly polarized X-ray illumination. This observation enables polarization-dependent imaging contrast mapping of apatite, a method to quantitatively measure and display nanocrystal orientations in large, pristine arrays of nano- and microcrystalline structures. Parrotfish enameloid consists of 100 nm-wide, microns long crystals co-oriented and assembled into bundles interwoven as the warp and the weave in fabric and therefore termed fibers here. These fibers gradually decrease in average diameter from 5 μm at the back to 2 μm at the tip of the tooth. Intriguingly, this size decrease is spatially correlated with an increase in hardness.

Colour patterns in fish are often used as an important medium for communication. Anemonefish, characterized by specific patterns of white bars, inhabit host anemones and defend the area around an anemone as their territory. The host anemone is used not only by the anemonefish, but also by other fish species that use anemones as temporary shelters. Anemonefish may be able to identify potential competitors by their colour patterns. We first examined the colour patterns of fish using host anemones inhabited by Amphiprion ocellaris as shelter and compared them with the patterns of fish using surrounding scleractinian corals. There were no fish with bars sheltering in host anemones, although many fish with bars were found in surrounding corals. Next, two fish models, one with white bars and the other with white stripes on a black background, were presented to an A. ocellaris colony. The duration of aggressive behaviour towards the bar model was significantly longer than that towards the stripe model. We conclude that differences in aggressive behaviour by the anemonefish possibly select the colour patterns of cohabiting fish. This study indicates that colour patterns may influence not only intraspecific interactions but also interspecific interactions in coral reef ecosystems. [ABSTRACT FROM AUTHOR]

Anemone-like animals belonging to the order Zoantharia are common anthozoans widely distributed from shallow to deep tropical and subtropical waters. Some species are well-known because of their high toxicity due to the presence of palytoxin (PLTX) in their tissues. PLTX is a large polyhydroxylated compound and one of the most potent toxins known. Currently, the PLTX biosynthetic pathway in zoantharians and the role of the host or the putative symbiotic organism(s) involved in this pathway are entirely unknown. To better understand the presence of PLTX in some Zoantharia, twenty-nine zoantharian colonies were analysed in this study. All zoantharian samples and their endosymbiotic dinoflagellates (Symbiodiniaceae = Zooxanthellae) were identified using DNA barcoding and phylogenetic reconstructions. Quantification of PLTX and its analogues showed that the yields contained in Palythoa heliodiscus, Palythoa aff. clavata and one potentially undescribed species of Palythoa are among the highest ever found (up to > 2 mg/g of wet zoantharian). Mass spectrometry imaging was used for the first time on Palythoa samples and revealed that in situ distribution of PLTX is mainly located in ectodermal tissues such as the epidermis of the body wall and the pharynx. Moreover, high levels of PLTX have been detected in histological regions where few or no Symbiodiniaceae cells could be observed. Finally, issues such as host‐specificity and environmental variables driving biogeographical patterns of hosted Symbiodiniaceae in zoantharian lineages were discussed in light of our phylogenetic results as well as the patterns of PLTX distribution. It was concluded that (1) the variability of Symbiodiniaceae diversity may be related to ecological divergence in Zoantharia, (2) all Palythoa species hosted Cladocopium Symbiodiniaceae (formerly clade C), (3) the sole presence of Cladocopium is not sufficient to explain the presence of high concentrations of PLTX and/or its analogues, and (4) the ability to produce high levels of PLTX and/or its analogues highlighted in some Palythoa species could be a plesiomorphic character inherited from their last common ancestor and subsequently lost in several lineages. [ABSTRACT FROM AUTHOR]

Coastal marine ecosystems, such as coral reefs, are severely threatened by climate changes, overexploitation, and marine pollution. Particularly, environmental pollution caused by petroleum-derived substances is poorly studied in coral reefs in tropical developing countries, with a total absence of data about these contaminants in some regions. In this work, we determined the levels of conventional and unconventional PAHs in the tissue and skeleton of the coral Montastraea cavernosa in a seascape scale of the Southwest Atlantic. We sampled in 12 coral reefs adjacent to the coast along approximately 200 km. We found 14 PAHs, 2 Oxy-PAHs, and 15 Nitro-PAHs in the samples, and among them, benzo[a]pyrene, chrysene, benzo[a]anthracene, benzo[k]fluoranthene, indeno[1,2,3-c,d]pyrene and dibenz[a,h]anthracene, which are mutagenic, teratogenic and carcinogenic substances. Skeletons presented predominantly lower quantities of ∑PAHs than the respective tissue, except for the skeletons from one reef severely impacted by oil spills. The ∑PAHs levels were lower in a bay near an urbanized region than in open sea reefs. Diagnostic ratios indicate mixogenic sources, with the predominance of petrogenic origin. Our study provides the first occurrence of PAHs, Nitro-PAHs, and Oxy-PAHs distribution in corals from the Southwest Atlantic Ocean, and we expect that these data will help to evaluate any future impacts and management of this ecosystem., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 Elsevier B.V. All rights reserved.)

Outbreaks of corallivorous Crown of Thorns Starfish (Acanthaster spp.; CoTS) cause substantial coral mortality throughout the Indo-Pacific, particularly on the Great Barrier Reef (GBR). Refining CoTS population density modelling and understanding the disparities between real-world observations and model predictions is crucial for developing effective control strategies. Using a spatially explicit ecosystem model of the GBR, we compared CoTS density model predictions to observations and incorporated a new zone-specific mortality rate to account for differences in predation of CoTS between fished and protected reefs. We found high congruence between predictions and observations: ∼81 % of categorical reef level CoTS densities matched or only differed by one category. However, underpredictions increased with higher observed densities. Zone-specific CoTS mortality reduced severe underpredictions from 7.1 % to 5.6 %, which is critical for managers as underpredictions indicate missing outbreaks where targeted culling is necessary, but also lead to underestimated coral loss attributed to CoTS outbreaks. Reef protection status affected prediction accuracy, highlighting the importance of further research on in situ CoTS mortality rates. The location of a reef inside or outside the "initiation box", a speculative area of primary outbreaks (i.e., initial abrupt population increases) on the GBR, also influenced accuracy, with exact predictions more likely outside. Accurately modelling initiation box dynamics is challenging due to limited empirical data on CoTS outbreaks, highlighting the need for focussed research on outbreak dynamics to enhance predictive accuracy. Spatial factors, such as region and shelf position, contributed to the variance between observations and predictions, underscoring the importance of the spatial-temporal context of each observation. Observations of CoTS can help refine model predictions, guide targeted control measures, and contribute to effective ecosystem management for the long-term resilience of the GBR and other reefs targeted by CoTS throughout the Indo-Pacific., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 The Authors. Published by Elsevier B.V. All rights reserved.)

This study investigated microplastic and other micro-debris pollution in sediment, seawater, sea cucumbers, and corals from fringing and patch reefs in Kāne'ohe Bay, O'ahu, Hawai'i, USA. Microplastic pollution in Kāne'ohe Bay Bay was low compared to other tropical coral reefs. Microplastics were detected in sediments (29 %), sea cucumbers (9 %), and coral (0-2 %) samples but were not quantifiable. Seawater had quantifiable microplastic (< 0.5 mm) and macroplastic (> 0.5 mm) pollution, with mean concentrations ranging from 0.0061 to 0.081 particles m -3 . Most particles detected in seawater samples were larger, floating plastic debris consisting mostly of polyethylene, polypropylene fragments, and fibers. Across the other matrices, the most detected particles were polyester, polypropylene, and cotton fibers. These results provide baseline data for this important coral reef ecosystem, and further monitoring is recommended to understand the seasonal and long-term trends in microplastic pollution and its potential future impacts., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 Elsevier Ltd. All rights reserved.)

Numerous studies have investigated the occurrence of plastic additives in marine biota. Yet, their main vector of transfer into organisms tissues remains unknown. We explored seven common additives in benthic coral reef invertebrates residing on natural/plastic substrates in a protected marine reserve versus an unprotected reef to ascertain whether additives transfer by substrate leaching. Samples of three coral-reef species were extracted and analyzed by GCMS and HPLC. Of the seven chemical additives investigated, dibenzylamine and bis(2-ethylhexyl) phthalate were detected. No significant association was found between additives and substrate type, possibly because these plastics have been submerged for years, and the majority of additives within them have leached. The marine reserve had fewer samples with additives, highlighting the importance of active management. Understanding the transfer vectors of plastic additives into biota is essential for assessing the risk they pose and devising effective management tools for protecting coral reefs., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 Elsevier Ltd. All rights reserved.)

Little is known about microplastics (MPs) in corals from the Indian Ocean. We compared MP concentrations, morphotypes, size, colours, and polymer compositions in six coral genera from three remote Mascarene islands (Rodrigues, St. Brandon's Atoll, and Agalega) of the Republic of Mauritius, on a 1200 km transect located in the South Equatorial Current (SEC). The mean MP concentration was 0.78 n/g (53 % fibres) with no significant differences between islands. Polymers were polypropylene (78 %) and polyethylene (18 %). We conclude that the SEC's MP concentrations and compositions have homogenized over thousands of kilometres across the Indian Ocean. We discuss the lack of hazardous polyurethane MPs in coral samples given obvious sources on St Brandon. To the best of our knowledge, this study is the first to report on MPs in coral from the Western Indian Ocean and the Mascarene Islands providing a baseline for further research, monitoring, mitigation, and policy development., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024. Published by Elsevier Ltd.)

Purpose: To evaluate a new cultivated coral graft (CCG) in an in vivo experimental guided bone regeneration (GBR) procedure., Materials and Methods: The calvarias of eight rabbits were surgically exposed, and circular defects 8 mm in diameter were prepared. One defect was filled with CCG particles (experimental group); the contralateral defect (control group) was spontaneously filled by blood clot. All defects were covered with a collagen membrane. Subjects were euthanized after 8 weeks., Results: Histologic observations of the defects showed similar bone growth patterns in both experimental and control osteotomies. In the experimental defects, no traces of coral particles were observed. Histometric analysis showed denser bone in the pristine zone (65%-66%) than in the peripheral zone for both the control (50%) and experimental defects (31%) (P &#61; not significant). The new bone percentage was reduced from the peripheral zone toward the middle and the center of the defect (31%, 32%, and 27%, respectively) as the distance from the peripheral pristine bone borders increased., Conclusions: The existing data supports the complete degradation of CCG as a spacemaintaining scaffold for GBR procedures.

The composition of coral-reef sediments is highly variable across space and time, and differences in the life histories of the dominant calcifying organisms on reefs contribute to the heterogeneity of reef sediments. Previous studies have suggested that variations in coral-reef bioerosion can influence spatial and temporal variations of sedimentary assemblages: elevated erosion rates of dead coral skeletons can trigger a pulse of coral-derived sediments and cause a shift in the dominance of sedimentary grains from coralline algae, such as Halimeda, to coral. We assessed the variability of the sedimentary composition and bioerosion rates of reefs at different spatial scales to determine the association between these two variables. We surveyed the benthic assemblages on reefs exhibiting different ecological states and collected samples of the associated sediments. We calculated the carbonate budget for each site and compared their variability at different hierarchical levels to the variability of their respective sedimentary assemblages. At the scale of sites (1-10 km), Halimeda cover was a significant predictor of the relative abundance of Halimeda grains. Both the relative abundance of coral grains and reef bioerosion rates varied significantly at the scale of locality (tens to hundreds of km), with high abundances of coral grains in the sediments coinciding with high rates of bioerosion. The main drivers of bioerosion at our localities were parrotfish assemblages dominated by large size classes of excavating species such as Sparisoma viride. Reef sediments may reflect the gross degree of bioerosion pressure that reefs experience, and historical changes in bioerosion rates could potentially be assessed by examining the sediments across temporal scales., Competing Interests: The authors have declared that no competing interests exist., (Copyright: © 2024 Rodriguez-Ruano et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.)

Since 2014, the stony coral tissue loss disease (SCTLD) has been decimating corals in the Caribbean. Although the trigger of this outbreak remains elusive, evidence suggests waterborne sediment-mediated disease transmission. The outbreak reportedly initiated in September 2014 at a reef site off Virginia Key (VKR), during extensive dredging operations at the Port of Miami. Here we use a high-resolution ocean model to identify the potential driver of the outbreak by simulating the dispersal of dredged sediments, wastewater plumes and disease agents. Our results suggest that VKR could have been impacted by fine sediments produced by dredging operations, especially those involving non-conventional rock-chopping techniques. Wastewater contamination was unlikely. Additionally, our connectivity analysis indicates potential disease transmission from other affected reefs to VKR. Our results therefore suggest that dredging operations might be responsible for the onset of the epidemics. This underscores the need for stricter operational guidelines in future dredging projects., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 Elsevier Ltd. All rights reserved.)

Members of the genus Pseudopterogorgia Kükenthal, 1919 are widely distributed in shallow water of the Indo-West Pacific. During an investigation of benthic biodiversity in the subtidal zone surrounding the Nanji Islands in the East China Sea, two specimens of Pseudopterogorgia were collected and described as a new species based on an integrated morphological-molecular approach. Pseudopterogorgiananjiensis sp. nov. is most similar to P.fredericki Williams & Vennam, 2001 in the irregular branching form and indistinct scaphoids, but differs by the coenenchymal sclerite content of distinct capstans and a few warty spindles and radiates (vs. mostly warty spindles and a few capstans), and a purplish colony (vs. white, pink to deep rose). Molecular phylogenetic analyses, based on the mtMutS-COI gene sequences, delineated a monophyletic clade encompassing all assessed Pseudopterogorgia species. Within this clade, P.nanjiensis sp. nov. showed a close phylogenetic affinity with both P.fredericki and P.australiensis Ridley, 1884., Competing Interests: The authors have declared that no competing interests exist., (Tingzai Sun, Yu Xu, Kuidong Xu, Shun Chen, Shangwei Xie, Zifeng Zhan.)

The relative abundance of groups of species is often used in ecological surveys to estimate community composition, a metric that reflects patterns of commonness and rarity of biological assemblages. The focus of this paper is measurements of the abundances of four benthic groups (that live on the seafloor) at several reefs on Australia's Great Barrier Reef (GBR) gathered between 2012 and 2017. In this paper we develop a statistical model to find clusters of locations with similar composition. We examine the changes in clusters during a period impacted by an unprecedented sequence of extreme environmental disturbances. To achieve this, we propose a model that incorporates the geographical location of the data, accounting for the possibility that nearby reefs are similar in composition. This is accomplished with a Dirichlet mixture model and a Potts distribution on the cluster assignments. Non-availability of the normalised Potts distribution makes Bayesian inference a doubly-intractable task. To circumvent this additional inferential challenge, an approximate exchange algorithm is specified. The analysis of the 2012 data, collected before the weather disturbances, reveals four clusters. The four groups highlight the primary habitat patterns in the 2012 GBR, each with distinct ecological characteristics: (1) areas with above-average soft coral abundance, (2) sand-dominated regions commonly found in the central part, (3) southern reefs with a more balanced distribution of species, and (4) habitats dominated by algae and hard corals. Compared to subsequent surveys conducted after disturbances, there is evidence of a decline in the number of clusters and a simplification of reef composition at the regional scale., (© 2024. The Author(s).)

Paracondylactissinensis Carlgren, 1934 is a sea anemone with economic value in China. The wild population of P.sinensis has been shrinking due to overfishing and environmental pollution, which have caused price instability. In winter, the price of P.sinensis can reach 25 USD per kilogram. Up to now, there are no genetic markers developed for P.sinensis , preventing a further exploration of their population genetic diversity. In this study, the full-length transcriptome of P.sinensis was sequenced and microsatellite DNA markers (simple sequence repeats [SSRs]) were developed from those transcripts. A total of 52 primer pairs, which can amplify specific polymorphic bands in PCR experiments, were designed for the SSR markers. Genetic diversity and population genetics were analysed for P.sinensis populations collected from the coasts of Taizhou and Rizhao using six microsatellite DNA loci. While inbreeding was detected in both populations (F is > 0), the overall number of alleles (Na = 11.3) and bottleneck analysis suggested that the genetic diversity of P.sinensis has not been greatly impacted. Clustering analyses using STRUCTURE, principal coordinate analysis and unweighted pair group method with arithmetic mean tree revealed that the Taizhou population diverged from the Rizhao population; however, the genetic differentiation between the populations was moderate. Human-mediated commercial activities may be the principal reasons for the gene flow between the populations. Our study provides the first evaluation of the genetic resources of wild P.sinensis populations in China, which can serve as a useful reference for future comparative studies on population genetics and may guide policy-makers in initiating strategies for germplasm conservation and artificial breeding., Competing Interests: No conflict of interest to declare Disclaimer: This article is (co-)authored by any of the Editors-in-Chief, Managing Editors or their deputies in this journal., (Junyuan Li, Xuyi Yang, Zifeng Zhan, Juan Feng, Tinghui Xie, Yang Li.)

We investigated the microplastics (MP) abundance, characteristics and pollution severity in the six coral reef ecosystems along the southern and western coasts of Sri Lanka during the southwest monsoon. The small blue-coloured fibres dominated within coral reefs and reef environments. The average coral, surface water and surface sediment MP concentration were 806.64 ± 93.72 particles kg -1 ww, 23.42 ± 5.01 particles m -3 , and 54.11 ± 8.04 particles kg -1 dw, respectively. Coral MP concentration was significantly correlated with surface water (r = 0.65) and surface sediments (r = 0.59) indicating that the reef environment was the source of coral MP enrichment. Coral MP concentration was spatially different (p < 0.05) which may likely be due to the changes in winds, waves, coral biology and plastic sources. MP Pollution Load Index indicated that low MP contamination hazard. Since the presence of MP often deteriorates coral's health, further investigations are necessary to understand the MP's effects on the health of coral reef ecosystems., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 Elsevier Ltd. All rights reserved.)

This study explores microplastic and cellulosic microparticle occurrences in the NE Atlantic, focusing on the Porcupine Bank Canyon and Porcupine Seabight. Water samples from depths ranging between 605 and 2126 m and Lophelia pertusa coral samples from 950 m depth were analysed. Microparticles were detected in deep-water habitats, with concentrations varying from 2.33 to 9.67 particles L -1 in the Porcupine Bank Canyon, notably lower at greater depths. This challenges the assumption of deeper habitats solely acting as microplastic sinks. We also found evidence of microparticle adsorption and ingestion by L. pertusa. The presence of microparticles in cold-water corals underscores their vulnerability to pollutants. Furthermore, the dominance of rayon microparticles in both water and coral samples raises questions about marine pollution sources, potentially linked to terrestrial origins. This research emphasises the critical need for comprehensive exploration and conservation efforts in deep-sea environments, especially to protect vital ecosystems like L. pertusa reefs., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024. Published by Elsevier Ltd.)

To address shortages in construction materials for island engineering, tackle the accumulation of solid waste, and inhibit the shrinkage of geopolymers, coral waste was utilized as the internal curing material to prepare high-performance marine geopolymer concrete (MGC) with seawater, sea-sand, and normal limestone aggregate (LsA). The coral coarse aggregate (CorA) used in this investigation has a total porosity ranging from 50% to 58.3% with internal pore diameters spanning 50-400 μm. The water desorption of CorA followed a two-stage pattern within a relative humidity (RH) range of 75%-85%, becoming nonlinear above 90% RH, which released about 85% of its moisture within 200 h at 97% RH, demonstrating potential for internal curing. Adding a small amount of CorA to MGC increased slump and setting time by providing internal curing water. However, as CorA content exceeded 30%, the slump significantly decreased due to reduced mixing water and elevated activator concentration, while the initial setting time slightly decreased. Furthermore, the inclusion of saturated CorA in MGC significantly reduced autogenous shrinkage, with higher CorA contents (exceeding 30%) leading to slight expansion in the early stages and nearly eliminating shrinkage at contents above 40%. The greater drying shrinkage in geopolymer systems compared to ordinary Portland cement is due to capillary pressure compressing the product framework, converting larger gel pores into smaller ones. Additionally, the layered calcium aluminosilicate hydrate (C-A-S-H) gel exhibits more pronounced creep characteristics under low internal humidity conditions. The higher CorA content in MGC promoted the formation of hybrid C, N-A-S-H gel and hydrotalcite-like phases, and reduced carbonation issues. The interfacial transition zone (ITZ) between CorA and the geopolymer matrix formed a robust mechanical interlock, enhancing tensile strength and minimizing shrinkage-induced cracks. Based on overall performance and marine material utilization, an optimal substitution rate of CorA between 40% and 50% is recommended., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024. Published by Elsevier Ltd.)

The present work investigates the performance of a biofilm reactor filled with a new type of combined packing used to treat wastewater and explores a new technology approach for the application of coral sand and waste non-woven fabric. The combined packing was made of coral sand and waste non-woven fabric, which was used as a biofilm carrier to treat sewage. The experimental results showed that the removal efficiencies of COD, NH 4 + -N and TN in the biofilm reactor containing the combined packing were 92.9%, 72.9% and 63.2%, respectively. The maximum removal efficiencies of COD, NH 4 + -N and TN in the biofilm reactor containing single packing were 89.0%, 63.4% and 55.2%, respectively. The properties of the combined packing were characterized by Fourier Transform Infrared (FTIR), specific surface area, SEM and dehydrogenase activity. Infrared analysis showed that there were hydroxyl, carboxyl and carbonyl groups on the surface of coral sand and non-woven fabric which were beneficial for biofilm growth and wastewater treatment. The large pores in the interior of coral sand and non-woven fabric could provide a comfortable environment for microbes to grow and reproduce. The dehydrogenase activity of the biofilm on the surface of coral sand in the third biofilm reactor was 49.91 μgTF·g -1 ·h -1 , which was significantly higher than that of the other two biofilm reactors. The new type of combined packing is suitable for biofilm carriers with low cost, which can be applied to actual sewage treatment projects. This study provides a reference for the practical application of the technique.

Abstract Symmetry in the arrangement of body parts is a distinctive phylogenetic feature of animals. Cnidarians show both bilateral and radial symmetries in their internal organs, such as gastric pouches and muscles. However, how different symmetries appear during the developmental process remains unknown. Here, we report intraspecific variations in the symmetric arrangement of gastric pouches, muscles, and siphonoglyphs, the Anthozoan-specific organ that drives water into the organism, in D. lineata (Diadumenidae, Actiniaria). We found that the positional arrangement of the internal organs was apparently constrained to either biradial or bilateral symmetries depending on the number of siphonoglyphs. Based on the morphological observations, a mathematical model of internal organ positioning was employed to predict the developmental backgrounds responsible for the biradial and bilateral symmetries. In the model, we assumed that the specification of gastric pouches is orchestrated by lateral inhibition and activation, which results in different symmetries depending on the number of siphonoglyphs. Thus, we propose that a common developmental program can generate either bilateral or biradial symmetries depending on the number of siphonoglyphs formed in the early developmental stages.

A black coral, Bathypathes thermophila Chimienti, sp. nov. is described from the Saudi Arabian coasts of the Gulf of Aqaba and north Red Sea (Neom area) using an integrated taxonomic approach. The morphological distinctiveness of the new species is confirmed by molecular analyses. The species thrives in warm and high salinity waters typical of the Red Sea at bathyal depths. It can form colony aggregations on muddy bottoms with scattered, small hard substrates. Colonies are monopodial, feather-like, and attached to a hard substrate through a thorny basal plate. Pinnules are simple, arranged biserially and alternately, and all the same length (up to approximately 20 cm) except for few, proximal ones. Spines are triangular, laterally compressed, subequal, smooth, and simple or rarely bifurcated. Polyps are elongated transversely, 1.5-2.0 mm in transverse diameter. Large colonies can have one or few branches, whose origin is discussed. The phylogenetic position of B. thermophila sp. nov. within the order Antipatharia, recovered using three mitochondrial markers, shows that it is nested within the family Schizopathidae. It is close to species in the genera Parantipathes, Lillipathes, Alternatipathes, and Umbellapathes rather than to the other available representatives of the genus Bathypathes, as currently defined based on morphology. In agreement with previous findings, our results question the evolutionary significance of morphological characters traditionally used to discriminate Antipatharia at higher taxonomic level. [ABSTRACT FROM AUTHOR]

In 2013 Colombia made an important step towards the construction and management of Marine Protected Areas (MPAs) by establishing the first Deep Corals National Park (PNNCP). Inside this MPA, the coral Madracis myriaster (Cnidaria: Pocilloporidae) was found as the main reef builder, offering habitat for many species of fish and invertebrates. In order to improve the study of deep-sea coral habitats, their connectivity and prospective management, nine new genetic markers (microsatellites) were developed for M. myriaster and tested in samples from PNNCP. We present the assessment of these markers, with a specificity for the deep coral, and its prospective use in future analysis for the PNNCP and other areas in the Caribbean and the Atlantic, where M. myriaster is reported. We also include an additional taxonomic analysis performed on samples of M. myriaster using scanning electron microscopy. [ABSTRACT FROM AUTHOR]

Since 2017, a sea anemone species has been registered in central Portugal with a morphology comparable to Phymactis papillosa , from the Pacific shore of south and central America. In this paper, we have collected two individuals from Cascais, Portugal, extracted their DNA and amplified and sequenced the internal transcribed spacers I and II, markers frequently used in Cnidaria barcoding. The sequences obtained were compared with the ones available on GenBank, using the Basic Local Alignment Search Tool (BLAST) on the NCBI website. This procedure allowed the identification of P. papillosa. This is the first confirmed record of P. papillosa in European coasts. Citizen science data suggest occurrences in the Alentejo coast (south-west Portugal) and Mediterranean coast around Murcia, although no genetic or morphological confirmations of these records have been made. The potential effects of this species introduction are discussed. [ABSTRACT FROM AUTHOR]

A detailed analysis of the upper Viséan, Serpukhovian and Bashkirian Rugosa of the Donets Basin confirms their Mississippian/Pennsylvanian turnover during the Eumorphoceras / Homalophyllites-Hudsonoceras Zone, as postulated earlier (Fedorowski 1981a). The deterioration of rugose corals, globally diverse in time and space in the late Viséan and Serpukhovian, has resulted in the patchy distribution of survivors and newcomers, present in the Bashkirian. Difficulties in inter-basinal communication and the isolation of some sites have resulted in a different content of Bashkirian Rugosa in particular patches, with only rare genera in common. New data has made it possible to document the appearance of the first late Carboniferous genera in the Donets Basin as early as the lower Voznessenkian Horizon (= lower Chokierian Substage), i.e., close to the beginning of the Bashkirian Stage. The two stages of diversification, established in the Bashkirian rugose corals of the Donets Basin, cannot find their counterparts elsewhere. A palaeogeographic overview of the most important sites of diversified rugose corals documents the need to re-examine many taxa, which should be based on complete specimen studies. This and the precise placement of taxa in the modern stratigraphy must be done in order to make rugose corals globally comparable. Simple repetitions of names, commonly used in general summaries, is strongly misleading in both stratigraphic and palaeogeographic reconstructions. [ABSTRACT FROM AUTHOR]

Transposable elements have a significant impact on the structure and functioning of multicellular genomes, and also serve as a source of new genes. Studying the diversity and evolution of transposable elements in different taxa is necessary for the fundamental understanding of their role in genomes. The Tc1/mariner elements are one of the most widespread and diverse groups of DNA transposons. In this work, the structure, distribution, diversity, and evolution of the L18 (DD37E) elements in the genomes of cnidarians (Cnidaria) were studied for the first time. As a result, it was found that the L18 group is an independent family (and not a subfamily of the TLE family, as previously thought) in the Tc1/mariner superfamily. Of the 51 detected elements, only four had potentially functional copies. It is assumed that the L18 transposons are of ancient origin, and, in addition, the elements found in the genomes of organisms of the Anthozoa and Hydrozoa classes do not come from a common ancestral transposon within the Cnidaria phylum. In organisms of the Hydrozoa class, L18 transposons appeared as a result of horizontal transfer at a later time period. An intraspecies comparison of the diversity of the L18 elements demonstrates high homogeneity with respect to "old" transposons, which have already lost their activity. At the same time, distant populations, as in the case of Hydra viridissima, have differences in the representation of DNA transposons and the number of copies. These data supplement the knowledge on the diversity and evolution of Tc1/mariner transposons and contribute to the study of the influence of mobile genetic elements on the evolution of multicellular organisms. [ABSTRACT FROM AUTHOR]

Populations of some zoantharian species (Cnidaria: Anthozoa) have been able to proliferate in locations where abiotic conditions hinder scleractinian corals' survival. One of the contributing factors might be the advantageous host-symbiont associations that could lead holobionts to be more resilient to environmental variation, even in marginal-environments. However, few studies have addressed these Zoantharia–Symbiodiniaceae associations, especially little is known about their nature and distribution in the Atlantic Ocean. In this study, we use the large ribosomal subunit (LSU-rDNA) and Internal Transcribed Spacer 2 (ITS2) to examine the biodiversity and distribution of Symbiodiniaceae species within zoantharians that inhabit along the latitudinal gradient Madeira (40ºN)—Cape Verde (16ºN). Moreover, we determine the number of different endosymbionts genera inhabiting the same specimen, in order to estimate their ability to face alterations in the environment. The results showed that Symbiodiniaceae diversity increases towards the tropics, with a total of six ITS2 types belonging to Symbiodinium and Cladocopium, the latter being the most frequent genus. Furthermore, we have found a possible undescribed species inhabiting P. aff. clavata collected at Madeira Island, the northernmost limit of brachycnemic zoantharian distributions in the East Atlantic. These results, combined with the literature reviewed, constitute the first mention of the genus Symbiodinium in a species host that is not Zoanthus spp and for the archipelago of the Canary Islands. An appendix summarizing Zoantharia–Symbiodiniaceae distributions around the Atlantic is included to facilitate future research on these holobiont associations. [ABSTRACT FROM AUTHOR]

Octocorals are conspicuous members of coral reefs and deep-sea ecosystems. Yet, species boundaries and taxonomic relationships within this group remain poorly understood, hindering our understanding of this essential component of the marine fauna. We used a multifaceted approach to revisit the systematics of the Caribbean octocorals Plexaura homomalla and Plexaura kükenthali, two taxa that have a long history of taxonomic revisions. We integrated morphological and reproductive analyses with high-throughput sequencing technology to clarify the relationship between these common gorgonians. Although size and shape of the sclerites are significantly different, there is overlap in the distributions making identification based on sclerites alone difficult. Differences in reproductive timing and mode of larval development were detected, suggesting possible mechanisms of pre-zygotic isolation. Furthermore, there are substantial genetic differences and clear separation of the two species in nuclear introns and single-nucleotide polymorphisms obtained from de novo assembled transcriptomes. Despite these differences, analyses with SNPs suggest that hybridization is still possible between the two groups. The two nascent species also differed in their symbiont communities (genus Breviolum) across multiple sampling sites in the Caribbean. Despite a complicated history of taxonomic revisions, our results support the differentiation of P. homomalla and P. kükenthali, emphasizing that integrative approaches are essential for Anthozoan systematics. [ABSTRACT FROM AUTHOR]

Comprising approximately 7500 living species of various corals and sea anemones, Anthozoa ranks among the most ecologically and economically valuable marine taxa. However, the taxonomy and systematics of anthozoans remain in flux as several facets of their biology (e.g. cryptic speciation, hybridisation and introgression, morphological plasticity and convergence) confound taxonomists even today. Rapid advancements in molecular sequencing and analyses have made available vast quantities of genomic data on an increasing number of species across the anthozoan tree of life. While whole genome assemblies are expected to result in the most robust phylogenetic trees, reduced-representation techniques such as genome skimming, RAD-seq, phylotranscriptomics and hybrid capture have led to well-supported inferences at various taxonomic levels and may still be favoured at this stage due to the high cost associated with even a single genome assembly. Here, we examine the different genotyping and analytical approaches used in anthozoan phylogeny reconstructions, their applicability across different divergences, and the coverage of studies among anthozoan clades to date. Based on our review of 82 phylogenomic studies, we describe the suitability of methods employed relative to their aims, highlight the imbalanced coverage of taxonomic groups studied and assess immediate and long-term needs where consolidation and streamlining of approaches would further advance the field. Overall, we find that Scleractinia (Anthozoa) is the most phylogenetically sampled group and studies on Octocorallia (Anthozoa) and its subclades are emerging. Nevertheless, we emphasise the need for more phylotranscriptomic, hybrid capture and whole genome sequencing across all anthozoans to increase topological support and generate more precise divergence time estimates. The enhanced phylogenetic understanding of Anthozoa is expected to provide insights into the evolution of genes and adaptations to environmental stressors amidst the current climate and mass extinction crises. [ABSTRACT FROM AUTHOR]

New in situ records of the sublittoral sea anemone Oulactis coliumensis (Riemann-Zürneck & Gallardo, 1990) are provided from different localities of northern Chile and Peru. Specimens were generally observed buried in shallow soft bottoms (3–25 m depth), near port cities and in areas with a high organic load. This is the first report of the species outside its type locality (off the Bay of Coliumo, Chile; ~36°S), extending its range of distribution to lower latitudes. [ABSTRACT FROM AUTHOR]

The present review investigates our current knowledge of the richness and distribution of coral species inhabiting diverse habitats in Chilean coastal and marine waters, including the oceanic islands. Information, such as the spatial-temporal coverage, taxonomic resolution, and bathymetry of species, was extracted from published articles, geodatabases, and unpublished data. Our analyses of these data highlight major gaps in knowledge on corals in Chile, indicating this region remains poorly studied. The results show that the previous studies focused mostly on coastal and shallow-water habitats, with the continental slope, oceanic islands, and seamounts remaining mainly unexplored. Furthermore, high coral species richness was observed in the Magellanic Province compared with the northern Intermediate Area and Peruvian Province, and the temporal distribution of occurrence records was discontinuous, with peaks observed for the years 1876–1877, 1960–1967, and 2001–2016. We also report a new location and an extension of the known geographic distribution for Bathycyathus chilensis. Despite the progress in scientific knowledge achieved in the last decades, coral research still suffers from significant knowledge gaps, especially of the deep-sea benthic biodiversity in Chile. Further exploration of Chilean coastal and marine waters is therefore necessary to increase the knowledge of the coral biodiversity of this vast region. [ABSTRACT FROM AUTHOR]

Montastraea cavernosa is a common coral in the Caribbean basin found in several color morphs. To investigate the causes for brown and orange morphs we undertook a genomics approach on corals collected at the same time and depth in the Bahamas. The coral holobiont includes the host, symbiotic dinoflagellates (Symbiodinium spp.), and a diverse microbiome. While the coral host showed significant genetic differentiation between color morphs both the composition of the Symbiodinium spp. communities and the prokaryotic communities did not. Both targeted and global gene expression differences in the transcriptome of the host show no difference in fluorescent proteins while the metatranscriptome of the microbiome shows that pigments such as phycoerythrin and orange carotenoid protein of cyanobacterial origin are significantly greater in orange morphs, which is also consistent with the significantly greater number of cyanobacteria quantified by 16S rRNA reads and flow cytometry. The microbiome of orange color morphs expressed significantly more nitrogenase (nifH) transcripts consistent with their known ability to fix nitrogen. Both coral and Symbiodinium spp. transcriptomes from orange morphs had significantly increased expression of genes related to immune response and apoptosis, which may potentially be involved in maintaining and regulating the unique symbiont population in orange morphs.

Maintaining stable intracellular pH (pHi) is essential for homeostasis, and requires the ability to both sense pH changes that may result from internal and external sources, and to regulate downstream compensatory pH pathways. Here we identified the cAMP-producing enzyme soluble adenylyl cyclase (sAC) as the first molecular pH sensor in corals. sAC protein was detected throughout coral tissues, including those involved in symbiosis and calcification. Application of a sAC-specific inhibitor caused significant and reversible pHi acidosis in isolated coral cells under both dark and light conditions, indicating sAC is essential for sensing and regulating pHi perturbations caused by respiration and photosynthesis. Furthermore, pHi regulation during external acidification was also dependent on sAC activity. Thus, sAC is a sensor and regulator of pH disturbances from both metabolic and external origin in corals. Since sAC is present in all coral cell types, and the cAMP pathway can regulate virtually every aspect of cell physiology through post-translational modifications of proteins, sAC is likely to trigger multiple homeostatic mechanisms in response to pH disturbances. This is also the first evidence that sAC modulates pHi in any non-mammalian animal. Since corals are basal metazoans, our results indicate this function is evolutionarily conserved across animals.

Population genomic surveys suggest that climate-associated genetic variation occurs widely across species, but whether it is sufficient to allow population persistence via evolutionary adaptation has seldom been quantified. To ask whether rapid adaptation in reef-building corals can keep pace with future ocean warming, we measured genetic variation at predicted warm-adapted loci and simulated future evolution and persistence in a high-latitude population of corals from Rarotonga, Cook Islands. Alleles associated with thermal tolerance were present but at low frequencies in this cooler, southerly locality. Simulations based on predicted ocean warming in Rarotonga showed rapid evolution of heat tolerance resulting in population persistence under mild warming scenarios consistent with low CO2 emission plans, RCP2.6 and RCP4.5. Under more severe scenarios, RCP6.0 and RCP8.5, adaptation was not rapid enough to prevent extinction. Population adaptation was faster for models based on smaller numbers of additive loci that determine thermal tolerance and for higher population growth rates. Finally, accelerated migration via transplantation of thermally tolerant individuals (1 to 5%/year) sped adaptation. These results show that cool-water corals can adapt to warmer oceans but only under mild scenarios resulting from international emissions controls. Incorporation of genomic data into models of species response to climate change offers a promising method for estimating future adaptive processes.

Do corals form their skeletons by precipitation from solution or by attachment of amorphous precursor particles as observed in other minerals and biominerals? The classical model assumes precipitation in contrast with observed "vital effects," that is, deviations from elemental and isotopic compositions at thermodynamic equilibrium. Here, we show direct spectromicroscopy evidence in Stylophora pistillata corals that two amorphous precursors exist, one hydrated and one anhydrous amorphous calcium carbonate (ACC); that these are formed in the tissue as 400-nm particles; and that they attach to the surface of coral skeletons, remain amorphous for hours, and finally, crystallize into aragonite (CaCO3). We show in both coral and synthetic aragonite spherulites that crystal growth by attachment of ACC particles is more than 100 times faster than ion-by-ion growth from solution. Fast growth provides a distinct physiological advantage to corals in the rigors of the reef, a crowded and fiercely competitive ecosystem. Corals are affected by warming-induced bleaching and postmortem dissolution, but the finding here that ACC particles are formed inside tissue may make coral skeleton formation less susceptible to ocean acidification than previously assumed. If this is how other corals form their skeletons, perhaps this is how a few corals survived past CO2 increases, such as the Paleocene-Eocene Thermal Maximum that occurred 56 Mya.

The diversity of fishes on coral reefs is influenced by the evolution of feeding innovations. For instance, the evolution of an intramandibular jaw joint has aided shifts to corallivory in Chaetodon butterflyfishes following their Miocene colonization of coral reefs. Today, over half of all Chaetodon species consume coral, easily the largest concentration of corallivores in any reef fish family. In contrast with Chaetodon, other chaetodontids, including the long-jawed bannerfishes, remain less intimately associated with coral and mainly consume other invertebrate prey. Here, we test (i) if intramandibular joint (IMJ) evolution in Chaetodon has accelerated feeding morphological diversification, and (ii) if cranial and post-cranial traits were affected similarly. We measured 19 cranial functional morphological traits, gut length and body elongation for 33 Indo-Pacific species. Comparisons of Brownian motion rate parameters revealed that cranial diversification was about four times slower in Chaetodon butterflyfishes with the IMJ than in other chaetodontids. However, the rate of gut length evolution was significantly faster in Chaetodon, with no group-differences for body elongation. The contrasting patterns of cranial and post-cranial morphological evolution stress the importance of comprehensive datasets in ecomorphology. The IMJ appears to enhance coral feeding ability in Chaetodon and represents a design breakthrough that facilitates this trophic strategy. Meanwhile, variation in gut anatomy probably reflects diversity in how coral tissues are procured and assimilated. Bannerfishes, by contrast, retain a relatively unspecialized gut for processing invertebrate prey, but have evolved some of the most extreme cranial mechanical innovations among bony fishes for procuring elusive prey.

A 2 °C increase in global temperature above pre-industrial levels is considered a reasonable target for avoiding the most devastating impacts of anthropogenic climate change. In June 2015, sea surface temperature (SST) of the South China Sea (SCS) increased by 2 °C in response to the developing Pacific El Niño. On its own, this moderate, short-lived warming was unlikely to cause widespread damage to coral reefs in the region, and the coral reef "Bleaching Alert" alarm was not raised. However, on Dongsha Atoll, in the northern SCS, unusually weak winds created low-flow conditions that amplified the 2 °C basin-scale anomaly. Water temperatures on the reef flat, normally indistinguishable from open-ocean SST, exceeded 6 °C above normal summertime levels. Mass coral bleaching quickly ensued, killing 40% of the resident coral community in an event unprecedented in at least the past 40 years. Our findings highlight the risks of 2 °C ocean warming to coral reef ecosystems when global and local processes align to drive intense heating, with devastating consequences.

BackgroundPorites astreoides is a ubiquitous species of coral on modern Caribbean reefs that is resistant to increasing temperatures, overfishing, and other anthropogenic impacts that have threatened most other coral species. We assembled and annotated a transcriptome from this coral using Illumina sequences from three different developmental stages collected over several years: free-swimming larvae, newly settled larvae, and adults (>10 cm in diameter). This resource will aid understanding of coral calcification, larval settlement, and host-symbiont interactions.FindingsA de novo transcriptome for the P. astreoides holobiont (coral plus algal symbiont) was assembled using 594 Mbp of raw Illumina sequencing data generated from five age-specific cDNA libraries. The new transcriptome consists of 867 255 transcript elements with an average length of 685 bases. The isolated P. astreoides assembly consists of 129 718 transcript elements with an average length of 811 bases, and the isolated Symbiodinium sp. assembly had 186 177 transcript elements with an average length of 1105 bases.ConclusionsThis contribution to coral transcriptome data provides a valuable resource for researchers studying the ontogeny of gene expression patterns within both the coral and its dinoflagellate symbiont.

Among Mediterranean habitat-forming alcyonaceans, the sea fan Eunicella verrucosa is known to form dense forests at circalittoral depths, providing seascape complexity and sustaining a rich associated fauna. Its occurrence in the Tavolara–Punta Coda Cavallo Marine Protected Area (NE Sardinia) has never been deeply investigated despite this area being well known from a biocoenotic point of view. This study provides new information on the size of the colonies settled between 35 and 59 m depth on granitic outcrops and represents a contribution to highlighting the hotspot of megabenthic diversity enclosed in the protected area. The presence of 100 colonies was assessed by photographic samplings performed between 2015 and 2020, in a small area characterized by peculiar ecological conditions. The morphometric descriptions and age estimation showed a persistently isolated population probably derived from a stochastic event of settling of larvae presumably coming from the Tuscany Archipelago. A richly associated epibiotic community, composed of 18 species/OTUs, showed how branched bryozoans, particularly Turbicellepora avicularis, and the parasitic octocoral Alcyonium coralloides, affected the colonies' branches, suggesting a putative anthropogenic impact related to fishing activity. This study indicates that proper protection and management strategies are mandatory for the Marine Protected Area, in order to conserve this unique population and the whole associated benthic assemblage. [ABSTRACT FROM AUTHOR]

Marine community datasets are key to the effective management and conservation of marine ecosystems, including coral reefs, which are increasingly threatened by a myriad of stressors. Although community information exists for many comparatively well-studied taxa, other common groups remain to be examined for even such basic information. In this study, we report on the zoantharian communities (Cnidaria: Anthozoa: Hexacorallia: Zoantharia) on the reefs of Bonaire in the southern Caribbean, and compare current results from 30, 20, 10, and 5 m depths to recent similar surveys from nearby Curaçao. The surveys revealed a total of 17 zoantharian species and epibiotic associations on the reefs of Bonaire. Additionally, results showed that while zoantharian assemblages around Bonaire at shallow 5 and 10 m depths, dominated by Palythoa spp., were similar to those found on Curaçao, diversity and numbers of zoantharians were higher at 20 and 30 m due to more abundant epibiotic Parazoanthidae species associated with sponges. Differences in assemblage structure were seen in deeper 20 and 30 m depths between the two islands, implying that conservation of deeper reef slopes, or along depth gradients, may need to be independently considered and addressed for each location. Analyses with environmental parameters on the Bonaire dataset indicate the potential importance of coral reef rugosity and physical structure in shaping these zoantharian communities, aspects that should be focused on in more detail in future research. [ABSTRACT FROM AUTHOR]

Background: As human activity alters the planet, there is a pressing need to understand how organisms adapt to environmental change. Of growing interest in this area is the role of epigenetic modifications, such as DNA methylation, in tailoring gene expression to fit novel conditions. Here, we reanalyzed nine invertebrate (Anthozoa and Hexapoda) datasets to validate a key prediction of this hypothesis: changes in DNA methylation in response to some condition correlate with changes in gene expression. Results: In accord with previous observations, baseline levels of gene body methylation (GBM) positively correlated with transcription, and negatively correlated with transcriptional variation between conditions. Correlations between changes in GBM and transcription, however, were negligible. There was also no consistent negative correlation between methylation and transcription at the level of gene body methylation class (either highly- or lowly-methylated), anticipated under the previously described "seesaw hypothesis". Conclusion: Our results do not support the direct involvement of GBM in regulating dynamic transcriptional responses in invertebrates. If changes in DNA methylation regulate invertebrate transcription, the mechanism must involve additional factors or regulatory influences. [ABSTRACT FROM AUTHOR]

Among octocorals, colonies of the deep-sea pennatulacean genus Umbellula Gray, 1870 are some of the most instantly recognisable forms. Historically however, species identification in this genus has been usually based on few morphological characters with very little knowledge of associated intraspecific variability. This fact, combined with the very limited access to these deep-sea organisms, has resulted in numerous uncertainties about the true characters that should be used in species determination and recognition of synonyms and questionable species. Recent phylogenetic analyses based on mitochondrial and nuclear DNA markers has shown to be an excellent complementary source of information to morphological examination, being able to detect incongruent taxonomic assignments in classifications based only on morphological characters. Molecular analyses can reveal the presence of paraphyletic or polyphyletic groupings of taxa that may then be the subject of further research integrating morphological and molecular techniques. This paper addresses the existence of a set of specimens initially assigned to the genus Umbellula Gray, 1870 but that have been shown to be distantly related to the type species Umbellula encrinus (Linnaeus, 1758) based on molecular phylogenetic hypotheses. Phylogenetic analyses based on four genetic markers, three mitochondrial (mtMutS , ND2 , Cox1) and one nuclear (28S), validate the definition of a new family (Pseudumbbellulidae fam. nov.) and two new genera (Pseudumbbellula gen. nov. and Solumbellula gen. nov). These analyses also justify the segregation of some of the morphological characters previously included in the diagnosis of the genus Umbellula and the monotypic family Umbellulidae Kölliker, 1880. Moreover, a new species, Pseudumbbellula scotiae sp. nov. is described and illustrated with material from the North Eastern Atlantic and compared with congeners. Additionally, the well-known but atypical species Umbellula monocephalus Pasternak, 1964 is transferred and described here as Solumbellula monocephalus (Pasternak, 1964), comb. nov., based on both molecular data and morphology. A phylogenetic analysis based on four genetic markers segregates material previously considered to belong to the octocoral genus Umbellula into a new family, two new genera and a new species. The complementary use of molecular and morphological data is necessary to disaggregate paraphyletic and polyphyletic groups when detected to understand the evolutionary pathways giving rise to the diversity in this and other groups of taxonomically challenging invertebrates. [ABSTRACT FROM AUTHOR]

The article presents a potentially obligate association of a pleustid amphipod of the genus Pleusymtes (Crustacea: Amphipoda: Pleustidae) with the large sea anemone Urticina eques (Gosse, 1858) (Anthozoa: Actiniaria: Actiniidae) from shallow waters of the Barents Sea. The new species shows a conspicuously striped (disruptive or aposematic) colouration, unlike other Arctic species of the genus, which shows a potential for its permanent connection with anemones. It is possible that this is the first known possibly obligatory anemone-associated species, within the genus and the family Pleustidae. The article discusses the taxonomy, morphological differences from congeners and ecological features of the new species, as well as the known symbiotic associations of sea anemones (as hosts) in Arctic and sub-Arctic waters.

Cold-water corals build up reef structures or coral gardens and play an important role for many organisms in the deep sea. Climate change, deep-sea mining, and bottom trawling are severely compromising these ecosystems, making it all the more important to document the diversity, distribution, and impacts on corals. This goes hand in hand with species identification, which is morphologically and genetically challenging for Hexa- and Octocorallia. Morphological variation and slowly evolving molecular markers both contribute to the difficulty of species identification. In this study, a fast and cheap species delimitation tool for Octocorallia and Scleractinia, an order of the Hexacorallia, of the Northeast Atlantic was tested based on 49 specimens. Two nuclear markers (ITS2 and 28S rDNA) and two mitochondrial markers (COI and mtMutS) were sequenced. The sequences formed the basis of a reference library for comparison to the results of species delimitation based on proteomic fingerprinting using MALDI-TOF MS. The genetic methods were able to distinguish 17 of 18 presumed species. Due to a lack of replicates, using proteome fingerprinting only 7 species were distinguishable. Species that could not be distinguished from one another still achieved good signals of spectra but were not represented by enough specimens for comparison. Therefore, it is predicted that with an extensive reference library of proteome spectra for Scleractinia and Octocorallia, MALDI-TOF MS may provide a rapid and cost-effective alternative for species discrimination in corals.