18,323 results on '"A. Charron"'
Search Results
152. NORAD and 9/11
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Charron, Andrea, primary, Fergusson, James, additional, and St John, Elizabeth, additional
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- 2023
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153. Introduction
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Charron, Andrea, primary, Moens, Alexander, additional, and Roussel, Stéphane, additional
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- 2023
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154. The Day and Beyond
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Charron, Andrea, primary and Cruz-Garcia, Nabila De La, additional
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- 2023
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155. Oomycete communities are influenced by land use and disease status in Christmas tree production in Southern Québec, Canada
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Hervé Van der Heyden, Marc‐Olivier Duceppe, Guillaume Charron, Philippe Tanguay, and Guillaume J. Bilodeau
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biomonitoring ,high‐throughput sequencing ,metabarcoding ,Phytophthora ,species diversity ,Environmental sciences ,GE1-350 ,Microbial ecology ,QR100-130 - Abstract
Abstract Forests are threatened by many natural stressors intensified by climate change and anthropogenic activities, which tend to increase their susceptibility to pests and pathogens. Consequently, oomycete‐related forest decline or dieback cases are increasing in natural, urban, and agricultural landscapes. It is in this context that Christmas tree growers from Southern Québec, Canada, are experiencing root rot problems, with reported incidences up to 25%. In a previous study, seven Phytophthora spp. were associated with this root rot problem, but the overall diversity of oomycetes has not yet been investigated. Hence, in this study, we use a metabarcoding approach to provide an overview of the diversity, richness, and composition of the oomycete community in fir plantations compared to surrounding natural forests. We showed that the P. cryptogea cluster, P. europaea cluster, P. sansomeana, and P. chlamydospora cluster were significantly more abundant in soils collected from plantations under diseased trees and confirmed that the P. europaea cluster (including P. abietivora) was most frequently associated with trees showing Phytophthora root rot‐like symptoms. Finally, we report that land use (anthropogenic activities) shapes oomycete diversity, while plantations can act as a gateway for invading natural forests. In fact, the results presented here suggested that the P. europaea cluster might already have crossed this boundary and that other species might follow, advocating the importance of improved surveillance of oomycete diversity in various environments.
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- 2024
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156. The genomic landscape of transposable elements in yeast hybrids is shaped by structural variation and genotype-specific modulation of transposition rate
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Mathieu Hénault, Souhir Marsit, Guillaume Charron, and Christian R Landry
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transposable elements ,yeast ,hybrids ,mutation accumulation ,experimental evolution ,mitochondrial DNA ,Medicine ,Science ,Biology (General) ,QH301-705.5 - Abstract
Transposable elements (TEs) are major contributors to structural genomic variation by creating interspersed duplications of themselves. In return, structural variants (SVs) can affect the genomic distribution of TE copies and shape their load. One long-standing hypothesis states that hybridization could trigger TE mobilization and thus increase TE load in hybrids. We previously tested this hypothesis (Hénault et al., 2020) by performing a large-scale evolution experiment by mutation accumulation (MA) on multiple hybrid genotypes within and between wild populations of the yeasts Saccharomyces paradoxus and Saccharomyces cerevisiae. Using aggregate measures of TE load with short-read sequencing, we found no evidence for TE load increase in hybrid MA lines. Here, we resolve the genomes of the hybrid MA lines with long-read phasing and assembly to precisely characterize the role of SVs in shaping the TE landscape. Highly contiguous phased assemblies of 127 MA lines revealed that SV types like polyploidy, aneuploidy, and loss of heterozygosity have large impacts on the TE load. We characterized 18 de novo TE insertions, indicating that transposition only has a minor role in shaping the TE landscape in MA lines. Because the scarcity of TE mobilization in MA lines provided insufficient resolution to confidently dissect transposition rate variation in hybrids, we adapted an in vivo assay to measure transposition rates in various S. paradoxus hybrid backgrounds. We found that transposition rates are not increased by hybridization, but are modulated by many genotype-specific factors including initial TE load, TE sequence variants, and mitochondrial DNA inheritance. Our results show the multiple scales at which TE load is shaped in hybrid genomes, being highly impacted by SV dynamics and finely modulated by genotype-specific variation in transposition rates.
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- 2024
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157. Adaptive laboratory evolution reveals regulators involved in repressing biofilm development as key players in Bacillus subtilis root colonization
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Maude Pomerleau, Vincent Charron-Lamoureux, Lucille Léonard, Frédéric Grenier, Sébastien Rodrigue, and Pascale B. Beauregard
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Bacillus subtilis ,Pseudomonas fluorescens ,root colonization ,adaptative laboratory evolution ,biofilm regulation ,YwcC ,Microbiology ,QR1-502 - Abstract
ABSTRACTRoot-associated microorganisms play an important role in plant health, such as plant growth-promoting rhizobacteria (PGPR) from the Bacillus and Pseudomonas genera. Although bacterial consortia including these two genera would represent a promising avenue to efficient biofertilizer formulation, we observed that Bacillus subtilis root colonization is decreased by the presence of Pseudomonas fluorescens and Pseudomonas protegens. To determine if B. subtilis can adapt to the inhibitory effect of Pseudomonas on roots, we conducted adaptative laboratory evolution experiments with B. subtilis in mono-association or co-cultured with P. fluorescens on tomato plant roots. Evolved isolates with various colony morphology and stronger colonization capacity of both tomato plant and Arabidopsis thaliana roots emerged rapidly from the two evolution experiments. Certain evolved isolates also had better fitness on the root in the presence of other Pseudomonas species. In all independent lineages, whole-genome resequencing revealed non-synonymous mutations in genes ywcC or sinR encoding regulators involved in repressing biofilm development, suggesting their involvement in enhanced root colonization. These findings provide insights into the molecular mechanisms underlying B. subtilis adaptation to root colonization and highlight the potential of directed evolution to enhance the beneficial traits of PGPR.IMPORTANCEIn this study, we aimed to enhance the abilities of the plant-beneficial bacterium Bacillus subtilis to colonize plant roots in the presence of competing Pseudomonas bacteria. To achieve this, we conducted adaptive laboratory experiments, allowing Bacillus to evolve in a defined environment. We successfully obtained strains of Bacillus that were more effective at colonizing plant roots than the ancestor strain. To identify the genetic changes driving this improvement, we sequenced the genomes of these evolved strains. Interestingly, mutations that facilitated the formation of robust biofilms on roots were predominant. Many of these evolved Bacillus isolates also displayed the remarkable ability to outcompete Pseudomonas species. Our research sheds light on the mutational paths selected in Bacillus subtilis to thrive in root environments and offers exciting prospects for improving beneficial traits in plant growth-promoting microorganisms. Ultimately, this could pave the way for the development of more effective biofertilizers and sustainable agricultural practices.
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- 2024
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158. Rolling the evolutionary dice: Neisseria commensals as proxies for elucidating the underpinnings of antibiotic resistance mechanisms and evolution in human pathogens
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Kelly M. Frost, Sierra L. Charron-Smith, Terence C. Cotsonas, Daniel C. Dimartino, Rachel C. Eisenhart, Eric T. Everingham, Elle C. Holland, Kainat Imtiaz, Cory J. Kornowicz, Lydia E. Lenhard, Liz H. Lynch, Nadia P. Moore, Kavya Phadke, Makayla L. Reed, Samantha R. Smith, Liza L. Ward, and Crista B. Wadsworth
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experimental evolution ,Neisseria ,azithromycin ,penicillin ,antibiotic resistance ,experiential learning ,Microbiology ,QR1-502 - Abstract
ABSTRACTSpecies within the genus Neisseria are adept at sharing adaptive allelic variation, with commensal species repeatedly transferring resistance to their pathogenic relative Neisseria gonorrhoeae. However, resistance in commensals is infrequently characterized, limiting our ability to predict novel and potentially transferable resistance mechanisms that ultimately may become important clinically. Unique evolutionary starting places of each Neisseria species will have distinct genomic backgrounds, which may ultimately control the fate of evolving populations in response to selection as epistatic and additive interactions coerce lineages along divergent evolutionary trajectories. Alternatively, similar genetic content present across species due to shared ancestry may constrain existing adaptive solutions. Thus, identifying the paths to resistance across commensals may aid in characterizing the Neisseria resistome—or the reservoir of alleles within the genus as well as its depth. Here, we use in vitro evolution of four commensal species to investigate the potential and repeatability of resistance evolution to two antimicrobials, the macrolide azithromycin and the β-lactam penicillin. After 20 days of selection, commensals evolved resistance to penicillin and azithromycin in 11/16 and 12/16 cases, respectively. Almost all cases of resistance emergence converged on mutations within ribosomal components or the mtrRCDE efflux pump for azithromycin-based selection and mtrRCDE, penA, and rpoB for penicillin selection, thus supporting constrained adaptive solutions despite divergent evolutionary starting points across the genus for these particular drugs. Though drug-selected loci were limited, we do identify novel resistance-imparting mutations. Continuing to explore paths to resistance across different experimental conditions and genomic backgrounds, which could shunt evolution down alternative evolutionary trajectories, will ultimately flesh out the full Neisseria resistome.IMPORTANCENeisseria gonorrhoeae is a global threat to public health due to its rapid acquisition of antibiotic resistance to all first-line treatments. Recent work has documented that alleles acquired from close commensal relatives have played a large role in the emergence of resistance to macrolides and beta-lactams within gonococcal populations. However, commensals have been relatively underexplored for the resistance genotypes they may harbor. This leaves a gap in our understanding of resistance that could be rapidly acquired by the gonococcus through a known highway of horizontal gene exchange. Here, we characterize resistance mechanisms that can emerge in commensal Neisseria populations via in vitro selection to multiple antimicrobials and begin to define the number of paths to resistance. This study, and other similar works, may ultimately aid both surveillance efforts and clinical diagnostic development by nominating novel and conserved resistance mechanisms that may be at risk of rapid dissemination to pathogen populations.
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- 2024
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159. In search of prosociality in rodents: A scoping review.
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Valérie Charron, Joey Talbot, Patrick R Labelle, Anne T M Konkle, and Hélène Plamondon
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Medicine ,Science - Abstract
Studying prosociality in rodents can provide insight into brain mechanisms potentially related to neurodevelopmental disorders known to impact social behaviors (e.g., autism spectrum disorder). While many studies have been published suggesting promising models, current knowledge remains scattered, including potential factors mediating prosocial behaviors in rodents. Prosocial behavior is characterized by an action done to benefit another or promote their well-being. The goal of this scoping review is to characterize current findings regarding prosocial paradigms in rodents, highlight current gaps in reporting, and identify factors shown to be important in mediating prosocial responses in rodents. Five databases were consulted in search of relevant studies published between 2000 and 2020 (APA PsycInfo, Embase, MEDLINE, Scopus, Web of Science). An update using a semi-supervised machine learning approach (ASReview) was then conducted to collect studies from 2021-2023. In total, 80 articles were included. Findings were the following: (1) Three categories of prosocial paradigm were extracted: cooperation, helping, and sharing tasks, (2) Rodents showed the ability to perform prosocial actions in all three categories, (3) Significant gaps in reported methodologies (e.g., failure to report animals' characteristics, housing conditions, and/or experimental protocol) and mediating factors (e.g., sex, strain, housing, food restriction) were found, and (4) Behaviors are determinant when investigating prosociality in rodents, however many studies omitted to include such analyses. Together these results inform future studies on the impact of mediating factors and the importance of behavioral analyses on the expression of prosocial behaviors in rodents.
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- 2024
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160. A national unmet needs assessment for CTSA-affiliated electronic health record data networks: A customer discovery approach
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Nallely Mora, Madeline Mehall, Lindsay A. Lennox, Harold A. Pincus, David Charron, and Elaine H. Morrato
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Clinical and translational science award ,clinical informatics ,common data model ,data network ,real-world data ,electronic health records ,implementation science ,real-world evidence ,Medicine - Abstract
Abstract Introduction: The expansion of electronic health record (EHR) data networks over the last two decades has significantly improved the accessibility and processes around data sharing. However, there lies a gap in meeting the needs of Clinical and Translational Science Award (CTSA) hubs, particularly related to real-world data (RWD) and real-world evidence (RWE). Methods: We adopted a mixed-methods approach to construct a comprehensive needs assessment that included: (1) A Landscape Context analysis to understand the competitive environment; and (2) Customer Discovery to identify stakeholders and the value proposition related to EHR data networks. Methods included surveys, interviews, and a focus group. Results: Thirty-two CTSA institutions contributed data for analysis. Fifty-four interviews and one focus group were conducted. The synthesis of our findings pivots around five emergent themes: (1) CTSA segmentation needs vary according to resources; (2) Team science is key for success; (3) Quality of data generates trust in the network; (4) Capacity building is defined differently by researcher career stage and CTSA existing resources; and (5) Researchers’ unmet needs. Conclusions: Based on the results, EHR data networks like ENACT that would like to meet the expectations of academic research centers within the CTSA consortium need to consider filling the gaps identified by our study: foster team science, improve workforce capacity, achieve data governance trust and efficiency of operation, and aid Learning Health Systems with validating, applying, and scaling the evidence to support quality improvement and high-value care. These findings align with the NIH NCATS Strategic Plan for Data Science.
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- 2024
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161. Risk Factors for Early Postoperative Morbidity and Mortality following Extremity Metastatic Pathologic or Impending Fracture Fixation
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Patrick Qi Wang, Brynn P. Charron, Kalter Hali, Matthew Raleigh, Christopher Del Balso, Mark D. Macleod, David W. Sanders, and Abdel-Rahman Lawendy
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Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Background. As cancer survivorship continues to improve, the perioperative morbidity and mortality following surgical treatment of metastatic bone disease become an increasingly important consideration. The objective of this study is to identify risk factors for early postoperative complications and mortality following extremity prophylactic fixation and pathologic fracture stabilization. Methods. A single-centre retrospective review of 185 patients (226 total surgeries) who underwent prophylactic fixation or pathologic fracture stabilization for extremity metastatic bone disease between 2005 and 2020 was performed. Skull, spine, pelvic, and revision surgeries along with diagnosis of primary bone neoplasm were excluded. Univariate, multivariate, and subgroup analyses were performed to identify predictors and independent risk factors for 30-day postoperative morbidity and mortality. Results. Primary cancers included lung (n = 41), breast (n = 36), multiple myeloma (n = 35), prostate (n = 16), lymphoma (n = 11), renal cell carcinoma (n = 10), and other (n = 36). The 30-day postoperative complication and mortality rates were 32.30% (n = 73) and 17.26% (n = 39), respectively. The most common complications were pulmonary-related, cardiac events, surgical site infection, sepsis, and thromboembolism. Pathologic fracture, presence of extra-skeletal metastases, longer surgical duration, and blood transfusion requirements were associated with 30-day postoperative complications overall. A past medical history for cardiac disease was also associated with systemic but not local surgical complications. Pathologic fracture, presence of extra-skeletal metastases, lung cancer, blood transfusion requirements, and increasing pack-year smoking history were predictors for 30-day mortality. In the multivariate analysis, pathologic fracture (p=0.016) and presence of extra-skeletal metastases (p=0.029) were independent predictors of complications. For mortality, pathologic fracture (p=0.014), presence of extra-skeletal metastases (p=0.0085), and increased blood transfusion requirements (p=0.048) were independent risk factors. Conclusions. The findings of this study provide additional guidance for perioperative risk assessment and patient counselling. Additionally, improving clinical assessment tools to identify and quantify patients at risk of pathologic fractures becomes increasingly important given the significant morbidity and mortality associated with pathologic fracture treatment.
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- 2024
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162. Apical Aneurysm Beyond Ischaemic Heart
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Nadia Boule laghzali, MD, Thierry Charron, MD, Maude Pagé, MD, Alexios Hadjis, MD, Marcio Sturmer, MD, and Giuliano Becker
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Diseases of the circulatory (Cardiovascular) system ,RC666-701 - Published
- 2024
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163. Supporting Inuit food sovereignty through collaborative research of an at-risk caribou herd
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Andrea Hanke, Amanda Niptanatiak Dumond, Juliette Di Francesco, Cindy Lou Adams, Terry Milton, Lisa-Marie Leclerc, Beverly Maksagak, Rosemin Nathoo, Amélie Roberto-Charron, Gwendolyn Blue, and Susan Kutz
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co-management ,Indigenous knowledge ,species-at-risk ,Rangifer ,Dolphin and Union caribou ,Traditional knowledge ,Nutrition. Foods and food supply ,TX341-641 ,Food processing and manufacture ,TP368-456 - Abstract
IntroductionClimate change is increasing vulnerability to food insecurity and biodiversity loss for many Indigenous Peoples globally. For Inuit, food sovereignty is one expression of Indigenous self-determination, and it includes the right of all Inuit to define their own conservation policies. Caribou conservation is particularly pertinent because of the central role caribou play in Inuit food systems. The “Dolphin and Union” (DU) caribou herd is a critical component of Inuit food systems in the Canadian Arctic and has declined by 89% in 2020 (3,815) from the peak measured by aerial survey in 1997 (34,558).MethodsOur first objective was to identify insights about this herd from and with Inuit Qaujimajatuqangit (knowledge). Using thematic analysis, we created a collective account on the DU caribou herd through a research partnership among Indigenous knowledge keepers, government, and academia. Our second objective was to put our findings into the broader literature on the DU caribou herd and connect isolated data on their abundance and distribution.ResultsWe found understanding Inuit knowledge of caribou meant situating harvesters’ knowledge within their family history, harvesting methods, conservation ethics, and in relation to other harvesters. Through this framework, we conceptualized Inuit-described metrics of caribou status, resulting in three sub-themes of caribou trends over time – their abundance, distribution, and health, − and ending with conservation concerns and potential actions. The synthesized data indicated that the overall population size increased since ~1990s and then decreased after ~2000s alongside a range contraction. Our results add value to co-management literature by (1) articulating Inuit-described metrics of a population decline that inform continued monitoring and incorporation of these metrics into management planning and (2) synthesizing data from various studies on the DU caribou herd abundance and distribution that assists management to make informed conservation decisions based on Inuit and Western knowledge.DiscussionResults from this research contribute to understanding the six dimensions of environmental health, i.e., availability, stability, accessibility, health and wellness, Inuit culture, and decision-making power and management relating to caribou. The results contribute information that is used by to support environmental health, i.e., knowledge systems, policy, and co-management relating to caribou. Thus, this collaborative research study supports the expression of Inuit food sovereignty through caribou conservation.
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- 2024
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164. Current state-of-the-art and gaps in platform trials: 10 things you should know, insights from EU-PEARL
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Franz Koenig, Cécile Spiertz, Daniel Millar, Sarai Rodríguez-Navarro, Núria Machín, Ann Van Dessel, Joan Genescà, Juan M. Pericàs, Martin Posch, Adrian Sánchez-Montalva, Ana Belén Estevez, Àlex Sánchez, Anna Sanjuan, Elena Sena, Emma Granados, Esther Arévalo de Andrés, Fátima Nuñez, Gara Arteaga, Gabriela Perez Fuentes Ruiz, Guillermo Fernández, Jesus Rivera-Esteban, Joan Comella, Josep Antoni Ramos-Quiroga, Juan Espinosa, Juan Manuel Pericàs, Lada Murcia, Lucinda Cash-Gibson, Maria de Valles Silvosa, María Fernanda Barroso de Sousa, Olga Sánchez-Maroto Carrizo, Pol Ibañez-Jiménez, Salvador Augustin, Santiago Perez-Hoyos, Sergio Muñoz-Martínez, Silvia Serres, Susana Kalko, Amelie Michon, Anton Ussi, Ben Lydall, Edwin van de Ketterij, Ignacio Quiles, Tamara Carapina, Constantin Kumaus, Dariga Ramazanova, Elias Laurin Meyer, Marta Bofill Roig, Martin Brunner, Pavla Krotka, Sonja Zehetmayer, Charlotte Carton, Eric Legius, Amina Begum, Carmine Pariante, Courtney Worrell, Giulia Lombardo, Luca Sforzini, Mollie Brown, Nancy Gullet, Nare Amasi-Hartoonian, Rosalie Ferner, Melisa Kose, Andrea Spitaleri, Arash Ghodousi, Clelia Di Serio, Daniela Cirillo, Federica Cugnata, Francesca Saluzzo, Francesco Benedetti, Maria Giovanna Scarale, Michela Zini, Paola Maria Rancoita, Riccardo Alagna, Sara Poletti, Britt Dhaenens, Johan Van Der Lei, Jurriaan de Steenwinkel, Maxim Moinat, Rianne Oostenbrink, Witte Hoogendijk, Michael Hölscher, Norbert Heinrich, Christian Otte, Cornelia Potratz, Dario Zocholl, Eugenia Kulakova, Frank Tacke, Jelena Brasanac, Jonas Leubner, Maja Krajewska, Michaela Maria Freitag, Stefan Gold, Thomas Zoller, Woo Ri Chae, Christel Daniel, Leila Kara, Morgan Vaterkowski, Nicolas Griffon, Pierre Wolkenstein, Raluca Pais, Vlad Ratziu, David Voets, Christophe Maes, Dipak Kalra, Geert Thienpoint, Jens Deckerck, Nathan Lea, Peter Singleton, Kert Viele, Peter Jacko, Scott Berry, Tom Parke, Burç Aydin, Christine Kubiak, Jacques Demotes, Keiko Ueda, Mihaela Matei, Sergio Contrino, Claas Röhl, Estefania Cordero, Fiona Greenhalgh, Hannes Jarke, Juliana Angelova, Mathieu Boudes, Stephan Dressler, Valentina Strammiello, Quentin Anstee, Iñaki Gutierrez-Ibarluzea, Maximilian Otte, Natalie Heimbach, Benjamin Hofner, Cora Burgwinkel, Hue Kaestel, Katharina Hees, Quynh Nguyen, Daniel Prieto-Alhambra, Eng Hooi (Cheryl) Tan, Mario Raviglione, Pierpaolo de Colombani, Simone Villa, Eduard Maron, Gareth Evans, Adam J. Savitz, Anna Duca, Anne Kaminski, Bie Wouters, Brandon Porter, Catherine Charron, Cecile Spiertz, Christopher Zizzamia, Danny Hasselbaink, David Orr, Divya Kesters, Ellen Hubin, Emma Davies, Eva-Maria Didden, Gabriela Guz, Evelyn Verstraete, Gary Mao, George Capuano, Heddie Martynowicz, Heidi De Smedt, Ingela Larsson, Ines Bruegelmans, Isabelle Coste, Jesus Maria Gonzalez Moreno, Julia Niewczas, Jiajun Xu, Karin Rombouts, Katherine Woo, Kathleen Wuyts, Kathryn Hersh, Khrista Oldenburg, Lingjiao Zhang, Mark Schmidt, Mark Szuch, Marija Todorovic, Maartje Mangelaars, Melissa Grewal, Molli Sandor, Nick Di Prospero, Pamela Van Houten, Pansy Minnick, Polyana Bastos, Robert Patrizi, Salvatore Morello, Severijn De Wilde, Tao Sun, Timothy Kline, Tine de Marez, Tobias Mielke, Tom Reijns, Vanina Popova, Yanina Flossbach, Yevgen Tymofyeyev, Zeger De Groote, Alex Sverdlov, Alexandra Bobirca, Annekatrin Krause, Catalin Bobrica, Daniela Heintz, Dominic Magirr, Ekkehard Glimm, Fabienne Baffert, Federica Castiglione, Franca Caruso, Francesco Patalano, Frank Bretz, Guenter Heimann, Ian Carbarns, Ignacio Rodríguez, Ioana Ratescu, Lisa Hampson, Marcos Pedrosa, Mareile Hark, Peter Mesenbrink, Sabina Hernandez Penna, Sarah Bergues-Lang, Susanne Baltes-Engler, Tasneem Arsiwala, Valeria Jordan Mondragon, Hua Guo, Jose Leite Da Costa, Carl-Fredrik Burman, George Kirk, Anders Aaes-Jørgensen, Jorgen Dirach, Mette Skalshøi Kjær, Alexandra Martin, Diyan Hristov, Florent Rousseaux, Norbert Hittel, Robert Dornheim, Daniel Evans, Nick Sykes, Camille Couvert, Catherine Leuven, Loïc Notelet, Madhavi Gidh-Jain, Mathieu Jouannin, Nadir Ammour, Suzanne Pierre, Volker Haufe, Yingwen Dong, Catherine Dubanchet, Nathalie de Préville, Tania Baltauss, Zhu Jian, Sara Shnider, Tal Bar-El, Annette Bakker, Marco Nievo, Uche Iloeje, Almari Conradie, Ece Auffarrth, Leandra Lombard, Majda Benhayoun, Morounfolu Olugbosi, Stephanie S. Seidel, Berta Gumí, Claudia García Guzmán, Eva Molero, Gisela Pairó, Núria Machin, Raimon Cardelús, Saira Ramasastry, Saskia Pelzer, Andreas Kremer, Erno Lindfors, and Chris Lynch
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Adaptive designs ,Master protocols ,Patient-centred ,Clinical research ,Integrated research platform ,Medicine (General) ,R5-920 - Abstract
Summary: Platform trials bring the promise of making clinical research more efficient and more patient centric. While their use has become more widespread, including their prominent role during the COVID-19 pandemic response, broader adoption of platform trials has been limited by the lack of experience and tools to navigate the critical upfront planning required to launch such collaborative studies. The European Union-Patient-cEntric clinicAl tRial pLatform (EU-PEARL) initiative has produced new methodologies to expand the use of platform trials with an overarching infrastructure and services embedded into Integrated Research Platforms (IRPs), in collaboration with patient representatives and through consultation with U.S. Food and Drug Administration and European Medicines Agency stakeholders. In this narrative review, we discuss the outlook for platform trials in Europe, including challenges related to infrastructure, design, adaptations, data sharing and regulation. Documents derived from the EU-PEARL project, alongside a literature search including PubMed and relevant grey literature (e.g., guidance from regulatory agencies and health technology agencies) were used as sources for a multi-stage collaborative process through which the 10 more important points based on lessons drawn from the EU-PEARL project were developed and summarised as guidance for the setup of platform trials. We conclude that early involvement of critical stakeholder such as regulatory agencies or patients are critical steps in the implementation and later acceptance of platform trials. Addressing these gaps will be critical for attaining the full potential of platform trials for patients. Funding: Innovative Medicines Initiative 2 Joint Undertaking with support from the European Union’s Horizon 2020 research and innovation programme and EFPIA.
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- 2024
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165. Orbitofrontal sulcal patterns in catatonia
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Mylène Moyal, Alexandre Haroche, David Attali, Ghita Dadi, Matthieu Raoelison, Alice Le Berre, Anton Iftimovici, Boris Chaumette, Sylvain Leroy, Sylvain Charron, Clément Debacker, Catherine Oppenheim, Arnaud Cachia, and Marion Plaze
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catatonic syndrome ,neurodevelopment disorder ,prefrontal cortex ,schizophrenia ,sulcogyral patterns ,Psychiatry ,RC435-571 - Abstract
Abstract Background Catatonia is a psychomotor syndrome frequently observed in disorders with neurodevelopmental impairments, including psychiatric disorders such as schizophrenia. The orbitofrontal cortex (OFC) has been repeatedly associated with catatonia. It presents with an important interindividual morphological variability, with three distinct H-shaped sulcal patterns, types I, II, and III, based on the continuity of the medial and lateral orbital sulci. Types II and III have been identified as neurodevelopmental risk factors for schizophrenia. The sulcal pattern of the OFC has never been investigated in catatonia despite the role of the OFC in the pathophysiology and the neurodevelopmental component of catatonia. Methods In this context, we performed a retrospective analysis of the OFC sulcal pattern in carefully selected homogeneous and matched subgroups of schizophrenia patients with catatonia (N = 58) or without catatonia (N = 65), and healthy controls (N = 82). Results Logistic regression analyses revealed a group effect on OFC sulcal pattern in the left (χ 2 = 18.1; p
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- 2024
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166. PiRank: Scalable Learning To Rank via Differentiable Sorting
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Swezey, Robin, Grover, Aditya, Charron, Bruno, and Ermon, Stefano
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Computer Science - Machine Learning ,Computer Science - Artificial Intelligence ,Computer Science - Information Retrieval - Abstract
A key challenge with machine learning approaches for ranking is the gap between the performance metrics of interest and the surrogate loss functions that can be optimized with gradient-based methods. This gap arises because ranking metrics typically involve a sorting operation which is not differentiable w.r.t. the model parameters. Prior works have proposed surrogates that are loosely related to ranking metrics or simple smoothed versions thereof, and often fail to scale to real-world applications. We propose PiRank, a new class of differentiable surrogates for ranking, which employ a continuous, temperature-controlled relaxation to the sorting operator based on NeuralSort [1]. We show that PiRank exactly recovers the desired metrics in the limit of zero temperature and further propose a divide and-conquer extension that scales favorably to large list sizes, both in theory and practice. Empirically, we demonstrate the role of larger list sizes during training and show that PiRank significantly improves over comparable approaches on publicly available internet-scale learning-to-rank benchmarks.
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- 2020
167. Average Consensus: A Little Learning Goes A Long Way
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Charron-Bost, Bernadette and Lambein-Monette, Patrick
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Computer Science - Distributed, Parallel, and Cluster Computing - Abstract
When networked systems of autonomous agents carry out complex tasks, the control and coordination sought after generally depend on a few fundamental control primitives. Chief among these primitives is consensus, where agents are to converge to a common estimate within the range of initial values, which becomes average consensus when the joint limit should be the average of the initial values. To provide reliable services that are easy to deploy, these primitives should operate even when the network is subject to frequent and unpredictable changes. Moreover, they should mobilize few computational resources so that low powered, deterministic, and anonymous agents can partake in the network. In this stringent adversarial context, we investigate the distributed implementation of these primitives over networks with bidirectional, but potentially short-lived, communication links. Inspired by the classic EqualNeighbor and Metropolis agreement rules for multi-agent systems, we design distributed algorithms for consensus and average consensus, which we show to operate in polynomial time in a synchronous temporal model. These algorithms are fully distributed, requiring neither symmetry-breaking devices such as unique identifiers, nor global control or knowledge of the network. Our strategy consists in making agents learn simple structural parameters of the network -- namely, their largest degrees -- which constitutes enough information to build simple update rules, implementable locally with little computational and memory overhead.
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- 2020
168. Synbols: Probing Learning Algorithms with Synthetic Datasets
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Lacoste, Alexandre, Rodríguez, Pau, Branchaud-Charron, Frédéric, Atighehchian, Parmida, Caccia, Massimo, Laradji, Issam, Drouin, Alexandre, Craddock, Matt, Charlin, Laurent, and Vázquez, David
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Computer Science - Computer Vision and Pattern Recognition ,Computer Science - Artificial Intelligence - Abstract
Progress in the field of machine learning has been fueled by the introduction of benchmark datasets pushing the limits of existing algorithms. Enabling the design of datasets to test specific properties and failure modes of learning algorithms is thus a problem of high interest, as it has a direct impact on innovation in the field. In this sense, we introduce Synbols -- Synthetic Symbols -- a tool for rapidly generating new datasets with a rich composition of latent features rendered in low resolution images. Synbols leverages the large amount of symbols available in the Unicode standard and the wide range of artistic font provided by the open font community. Our tool's high-level interface provides a language for rapidly generating new distributions on the latent features, including various types of textures and occlusions. To showcase the versatility of Synbols, we use it to dissect the limitations and flaws in standard learning algorithms in various learning setups including supervised learning, active learning, out of distribution generalization, unsupervised representation learning, and object counting.
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- 2020
169. Coarse Graining Molecular Dynamics with Graph Neural Networks
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Husic, Brooke E., Charron, Nicholas E., Lemm, Dominik, Wang, Jiang, Pérez, Adrià, Majewski, Maciej, Krämer, Andreas, Chen, Yaoyi, Olsson, Simon, de Fabritiis, Gianni, Noé, Frank, and Clementi, Cecilia
- Subjects
Physics - Computational Physics ,Physics - Biological Physics ,Physics - Chemical Physics ,Quantitative Biology - Biomolecules ,Statistics - Machine Learning - Abstract
Coarse graining enables the investigation of molecular dynamics for larger systems and at longer timescales than is possible at atomic resolution. However, a coarse graining model must be formulated such that the conclusions we draw from it are consistent with the conclusions we would draw from a model at a finer level of detail. It has been proven that a force matching scheme defines a thermodynamically consistent coarse-grained model for an atomistic system in the variational limit. Wang et al. [ACS Cent. Sci. 5, 755 (2019)] demonstrated that the existence of such a variational limit enables the use of a supervised machine learning framework to generate a coarse-grained force field, which can then be used for simulation in the coarse-grained space. Their framework, however, requires the manual input of molecular features upon which to machine learn the force field. In the present contribution, we build upon the advance of Wang et al.and introduce a hybrid architecture for the machine learning of coarse-grained force fields that learns their own features via a subnetwork that leverages continuous filter convolutions on a graph neural network architecture. We demonstrate that this framework succeeds at reproducing the thermodynamics for small biomolecular systems. Since the learned molecular representations are inherently transferable, the architecture presented here sets the stage for the development of machine-learned, coarse-grained force fields that are transferable across molecular systems., Comment: 17 pages, 9 figures
- Published
- 2020
- Full Text
- View/download PDF
170. Geometric Bounds for Convergence Rates of Averaging Algorithms
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Charron-Bost, Bernadette
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Computer Science - Multiagent Systems ,Computer Science - Discrete Mathematics - Abstract
We develop a generic method for bounding the convergence rate of an averaging algorithm running in a multi-agent system with a time-varying network, where the associated stochastic matrices have a time-independent Perron vector. This method provides bounds on convergence rates that unify and refine most of the previously known bounds. They depend on geometric parameters of the dynamic communication graph such as the normalized diameter or the bottleneck measure. As corollaries of these geometric bounds, we show that the convergence rate of the Metropolis algorithm in a system of $n$ agents is less than $1-1/4n^2$ with any communication graph that may vary in time, but is permanently connected and bidirectional. We prove a similar upper bound for the EqualNeighbor algorithm under the additional assumptions that the number of neighbors of each agent is constant and that the communication graph is not too irregular. Moreover our bounds offer improved convergence rates for several averaging algorithms and specific families of communication graphs. Finally we extend our methodology to a time-varying Perron vector and show how convergence times may dramatically degrade with even limited variations of Perron vectors.
- Published
- 2020
171. Interacting quantum mixtures for precision atom interferometry
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Corgier, Robin, Loriani, Sina, Ahlers, Holger, Posso-Trujillo, Katerine, Schubert, Christian, Rasel, Ernst M., Charron, Eric, and Gaaloul, Naceur
- Subjects
Physics - Atomic Physics ,Quantum Physics ,Atomic Physics - Abstract
We present a source engineering concept for a binary quantum mixture suitable as input for differential, precision atom interferometry with drift times of several seconds. To solve the non-linear dynamics of the mixture, we develop a set of scaling approach equations and verify their validity contrasting it to the one of a system of coupled Gross-Pitaevskii equations. This scaling approach is a generalization of the standard approach commonly used for single species. Its validity range is discussed with respect to intra- and inter-species interaction regimes. We propose a multi-stage, non-linear atomic lens sequence to simultaneously create dual ensembles with ultra-slow kinetic expansion energies, below 15 pK. Our scheme has the advantage of mitigating wave front aberrations, a leading systematic effect in precision atom interferometry., Comment: 38 pages, 7 figures
- Published
- 2020
- Full Text
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172. A Weakly Supervised Region-Based Active Learning Method for COVID-19 Segmentation in CT Images
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Laradji, Issam, Rodriguez, Pau, Branchaud-Charron, Frederic, Lensink, Keegan, Atighehchian, Parmida, Parker, William, Vazquez, David, and Nowrouzezahrai, Derek
- Subjects
Electrical Engineering and Systems Science - Image and Video Processing ,Computer Science - Computer Vision and Pattern Recognition - Abstract
One of the key challenges in the battle against the Coronavirus (COVID-19) pandemic is to detect and quantify the severity of the disease in a timely manner. Computed tomographies (CT) of the lungs are effective for assessing the state of the infection. Unfortunately, labeling CT scans can take a lot of time and effort, with up to 150 minutes per scan. We address this challenge introducing a scalable, fast, and accurate active learning system that accelerates the labeling of CT scan images. Conventionally, active learning methods require the labelers to annotate whole images with full supervision, but that can lead to wasted efforts as many of the annotations could be redundant. Thus, our system presents the annotator with unlabeled regions that promise high information content and low annotation cost. Further, the system allows annotators to label regions using point-level supervision, which is much cheaper to acquire than per-pixel annotations. Our experiments on open-source COVID-19 datasets show that using an entropy-based method to rank unlabeled regions yields to significantly better results than random labeling of these regions. Also, we show that labeling small regions of images is more efficient than labeling whole images. Finally, we show that with only 7\% of the labeling effort required to label the whole training set gives us around 90\% of the performance obtained by training the model on the fully annotated training set. Code is available at: \url{https://github.com/IssamLaradji/covid19_active_learning}.
- Published
- 2020
173. Bayesian active learning for production, a systematic study and a reusable library
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Atighehchian, Parmida, Branchaud-Charron, Frédéric, and Lacoste, Alexandre
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Computer Science - Machine Learning ,Statistics - Machine Learning - Abstract
Active learning is able to reduce the amount of labelling effort by using a machine learning model to query the user for specific inputs. While there are many papers on new active learning techniques, these techniques rarely satisfy the constraints of a real-world project. In this paper, we analyse the main drawbacks of current active learning techniques and we present approaches to alleviate them. We do a systematic study on the effects of the most common issues of real-world datasets on the deep active learning process: model convergence, annotation error, and dataset imbalance. We derive two techniques that can speed up the active learning loop such as partial uncertainty sampling and larger query size. Finally, we present our open-source Bayesian active learning library, BaaL., Comment: 10 pages, 6 figures
- Published
- 2020
174. The One Health High-Level Expert Panel (OHHLEP)
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Mettenleiter, Thomas C., Markotter, Wanda, Charron, Dominique F., Adisasmito, Wiku B., Almuhairi, Salama, Behravesh, Casey Barton, Bilivogui, Pépé, Bukachi, Salome A., Casas, Natalia, Becerra, Natalia Cediel, Chaudhary, Abhishek, Zanella, Janice R. Ciacci, Cunningham, Andrew A., Dar, Osman, Debnath, Nitish, Dungu, Baptiste, Farag, Elmoubasher, Gao, George F., Hayman, David T. S., Khaitsa, Margaret, Koopmans, Marion P. G., Machalaba, Catherine, Mackenzie, John S., Morand, Serge, Smolenskiy, Vyacheslav, and Zhou, Lei
- Published
- 2023
- Full Text
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175. Incidence and survival of transthyretin amyloid cardiomyopathy from a French nationwide study of in- and out-patient databases
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Damy, Thibaud, Bourel, Guillaume, Slama, Michel, Algalarrondo, Vincent, Lairez, Olivier, Fournier, Pauline, Costa, Jérôme, Pelcot, Françoise, Farrugia, Agnès, Zaleski, Isabelle Durand, Lilliu, Hervé, Rault, Caroline, Bartoli, Mathilde, Fievez, Stéphane, Granghaud, Anna, Rudant, Jeremie, Coste, Agathe, Cosson, Charlotte Noirot, Squara, Pierre-Alexandre, Narbeburu, Marion, De Neuville, Bertrand, and Charron, Philippe
- Published
- 2023
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- View/download PDF
176. An integrative and multi-indicator approach for wildlife health applied to an endangered caribou herd
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Aguilar, Xavier Fernandez, Leclerc, Lisa-Marie, Mavrot, Fabien, Roberto-Charron, Amélie, Tomaselli, Matilde, Mastromonaco, Gabriela, Gunn, Anne, Pruvot, Mathieu, Rothenburger, Jamie L., Thanthrige-Don, Niroshan, Jahromi, Elham Zeini, and Kutz, Susan
- Published
- 2023
- Full Text
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177. Machine learning coarse-grained potentials of protein thermodynamics
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Majewski, Maciej, Pérez, Adrià, Thölke, Philipp, Doerr, Stefan, Charron, Nicholas E., Giorgino, Toni, Husic, Brooke E., Clementi, Cecilia, Noé, Frank, and De Fabritiis, Gianni
- Published
- 2023
- Full Text
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178. Respecting tribal voices in the development of a gestational diabetes risk reduction preconception counseling program for American Indian/Alaska Native adolescent females: a qualitative study
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Moore, Kelly R., Stotz, Sarah A., Terry, Martha Ann, Seely, Ellen W., Gonzales, Kelly, Marshall, Gale, Nadeau, Kristen J., Akers, Aletha, Garcia-Reyes, Yesenia, and Charron-Prochownik, Denise
- Published
- 2023
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179. Efficacy of interactive manual dexterity training after stroke: a pilot single-blinded randomized controlled trial
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Térémetz, Maxime, Hamdoun, Sonia, Colle, Florence, Gerardin, Eloïse, Desvilles, Claire, Carment, Loïc, Charron, Sylvain, Cuenca, Macarena, Calvet, David, Baron, Jean-Claude, Turc, Guillaume, Maier, Marc A., Rosso, Charlotte, Mas, Jean-Louis, and Lindberg, Påvel G.
- Published
- 2023
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180. “It’s a proactive intervention instead of a reactive one”: measuring facilitators and barriers regarding readiness to implement a treatment program for infants with neonatal opioid withdrawal syndrome
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Holcomb, Leah, Koob, Caitlin, Mayo, Rachel, Charron, Elizabeth, Dickes, Lori, Sherrill, Windsor, and Hudson, Jennifer
- Published
- 2023
- Full Text
- View/download PDF
181. Pulcherriminic acid modulates iron availability and protects against oxidative stress during microbial interactions
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Charron-Lamoureux, Vincent, Haroune, Lounès, Pomerleau, Maude, Hall, Léo, Orban, Frédéric, Leroux, Julie, Rizzi, Adrien, Bourassa, Jean-Sébastien, Fontaine, Nicolas, d’Astous, Élodie V., Dauphin-Ducharme, Philippe, Legault, Claude Y., Bellenger, Jean-Philippe, and Beauregard, Pascale B.
- Published
- 2023
- Full Text
- View/download PDF
182. Macroevolutionary diversity of traits and genomes in the model yeast genus Saccharomyces
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Peris, David, Ubbelohde, Emily J., Kuang, Meihua Christina, Kominek, Jacek, Langdon, Quinn K., Adams, Marie, Koshalek, Justin A., Hulfachor, Amanda Beth, Opulente, Dana A., Hall, David J., Hyma, Katie, Fay, Justin C., Leducq, Jean-Baptiste, Charron, Guillaume, Landry, Christian R., Libkind, Diego, Gonçalves, Carla, Gonçalves, Paula, Sampaio, José Paulo, Wang, Qi-Ming, Bai, Feng-Yan, Wrobel, Russel L., and Hittinger, Chris Todd
- Published
- 2023
- Full Text
- View/download PDF
183. A Tumblr thematic analysis of perinatal health: Where users go to seek support
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Talbot Joey, Charron Valérie, and Konkle Anne TM
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women’s health ,perinatal ,social media ,social support ,misinformation ,Medicine - Abstract
With the research sex gap impacting available data on women’s health and the growing popularity of social media, it is not rare that individuals will seek health-related information on such platforms. Understanding how women use social media for perinatal-specific issues is crucial to gain knowledge on specific needs and gaps. The Tumblr platform is an excellent candidate to further understand the representation and discourse regarding perinatal health on social media. The objective was to identify specific themes to assess the present discourse pertaining to perinatal health. Posts were collected using Tumblr’s official API client over a 4-day period, from August 18 to 21, 2023, inclusively. A sentiment analysis was performed using the Valence Aware Dictionary and sEntiment Reasoner sentiment analysis toolkit and a deductive thematic analysis. In total, 235 posts were analyzed, and 11 individual categories were identified and divided into two main concepts; Women’s Health (Endometriosis; Postpartum Depression, Menopause, Miscarriage, Other Health Problems, Political Discourse) and Pregnancy/Childbirth (Maternal Mortality, Personal Stories, Pregnancy Symptoms, and Fitness/diet/weight). The last category was classified as Misinformation/Advertisement. Findings revealed that users used the Tumblr platform to share personal experiences regarding pregnancy, seek support from others, raise awareness, and educate on women’s health topics. Misinformation represented only 3% of the total sample. The present study demonstrates the feasibility of using in-depth data from Tumblr posts to inform us regarding current issues and topics specific to perinatal and women’s health. More research studies are needed to better understand the impact of social support and misinformation on perinatal health.
- Published
- 2023
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184. The Legacy of 9/11: Views from North America
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Andrea Charron, Alexander Moens, Stéphane Roussel, Andrea Charron, Alexander Moens, Stéphane Roussel
- Published
- 2023
185. Three founding ancestral genomes involved in the origin of sugarcane
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Pompidor, Nicolas, Charron, Carine, Hervouet, Catherine, Bocs, Stéphanie, Droc, Gaëtan, Rivallan, Ronan, Manez, Aurore, Mitros, Therese, Swaminathan, Kankshita, Glaszmann, Jean-Christophe, Garsmeur, Olivier, and D’Hont, Angélique
- Subjects
Human Genome ,Genetics ,Biotechnology ,Genome ,Plant ,Genomics ,Haplotypes ,Polyploidy ,Saccharum ,sugarcane ,polyploidy ,hybridization ,founding ancestral genome ,diversity ,Saccharum ,Ecology ,Plant Biology ,Forestry Sciences ,Plant Biology & Botany - Abstract
Background and aimsModern sugarcane cultivars (Saccharum spp.) are high polyploids, aneuploids (2n = ~12x = ~120) derived from interspecific hybridizations between the domesticated sweet species Saccharum officinarum and the wild species S. spontaneum.MethodsTo analyse the architecture and origin of such a complex genome, we analysed the sequences of all 12 hom(oe)ologous haplotypes (BAC clones) from two distinct genomic regions of a typical modern cultivar, as well as the corresponding sequence in Miscanthus sinense and Sorghum bicolor, and monitored their distribution among representatives of the Saccharum genus.Key resultsThe diversity observed among haplotypes suggested the existence of three founding genomes (A, B, C) in modern cultivars, which diverged between 0.8 and 1.3 Mya. Two genomes (A, B) were contributed by S. officinarum; these were also found in its wild presumed ancestor S. robustum, and one genome (C) was contributed by S. spontaneum. These results suggest that S. officinarum and S. robustum are derived from interspecific hybridization between two unknown ancestors (A and B genomes). The A genome contributed most haplotypes (nine or ten) while the B and C genomes contributed one or two haplotypes in the regions analysed of this typical modern cultivar. Interspecific hybridizations likely involved accessions or gametes with distinct ploidy levels and/or were followed by a series of backcrosses with the A genome. The three founding genomes were found in all S. barberi, S. sinense and modern cultivars analysed. None of the analysed accessions contained only the A genome or the B genome, suggesting that representatives of these founding genomes remain to be discovered.ConclusionsThis evolutionary model, which combines interspecificity and high polyploidy, can explain the variable chromosome pairing affinity observed in Saccharum. It represents a major revision of the understanding of Saccharum diversity.
- Published
- 2021
186. Pulcherriminic acid modulates iron availability and protects against oxidative stress during microbial interactions
- Author
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Vincent Charron-Lamoureux, Lounès Haroune, Maude Pomerleau, Léo Hall, Frédéric Orban, Julie Leroux, Adrien Rizzi, Jean-Sébastien Bourassa, Nicolas Fontaine, Élodie V. d’Astous, Philippe Dauphin-Ducharme, Claude Y. Legault, Jean-Philippe Bellenger, and Pascale B. Beauregard
- Subjects
Science - Abstract
Abstract Siderophores are soluble or membrane-embedded molecules that bind the oxidized form of iron, Fe(III), and play roles in iron acquisition by microorganisms. Fe(III)-bound siderophores bind to specific receptors that allow microbes to acquire iron. However, certain soil microbes release a compound (pulcherriminic acid, PA) that, upon binding to Fe(III), forms a precipitate (pulcherrimin) that apparently functions by reducing iron availability rather than contributing to iron acquisition. Here, we use Bacillus subtilis (PA producer) and Pseudomonas protegens as a competition model to show that PA is involved in a peculiar iron-managing system. The presence of the competitor induces PA production, leading to precipitation of Fe(III) as pulcherrimin, which prevents oxidative stress in B. subtilis by restricting the Fenton reaction and deleterious ROS formation. In addition, B. subtilis uses its known siderophore bacillibactin to retrieve Fe(III) from pulcherrimin. Our findings indicate that PA plays multiple roles by modulating iron availability and conferring protection against oxidative stress during inter-species competition.
- Published
- 2023
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187. Cost-Effectiveness of Icosapent Ethyl (IPE) for the Reduction of the Risk of Ischemic Cardiovascular Events in Canada
- Author
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Lachaine J, Charron JN, Gregoire JC, Hegele RA, and Leiter LA
- Subjects
cardiovascular diseases ,icosapent ethyl ,ipe ,cost-effectiveness ,cost per qaly ,Medicine (General) ,R5-920 ,Therapeutics. Pharmacology ,RM1-950 - Abstract
Jean Lachaine,1,2 Jean-Nicolas Charron,2 Jean C Gregoire,3 Robert A Hegele,4 Lawrence A Leiter5 1University of Montreal, Montreal, QC, Canada; 2PeriPharm Inc., Montreal, QC, Canada; 3Institut de cardiologie de Montréal, Montreal, QC, Canada; 4Robarts Research Institute, London, ON, Canada; 5Li Ka Shing Knowledge Institute, St. Michael’s Hospital, University of Toronto, Toronto, ON, CanadaCorrespondence: Jean Lachaine, Faculty of Pharmacy University of Montreal, 2900 Edouard-Montpetit Blvd, Montreal, Quebec, H3T 1J4, Canada, Email jean.lachaine@umontreal.caBackground: Despite the use of statins, many patients with cardiovascular disease (CVD) have persistent residual risk. In a large Phase III trial (REDUCE-IT), icosapent ethyl (IPE) was shown to reduce the first occurrence of the primary composite endpoint of cardiovascular death, nonfatal myocardial infarction, nonfatal stroke, coronary revascularization, or hospitalization for unstable angina.Methods: We conducted a cost-utility analysis comparing IPE to placebo in statin-treated patients with elevated triglycerides, from a publicly funded, Canadian healthcare payer perspective, using a time-dependent Markov transition model over a 20-year time horizon. We obtained efficacy and safety data from REDUCE-IT, and costs and utilities from provincial formularies and databases, manufacturer sources, and Canadian literature sources.Results: In the probabilistic base-case analysis, IPE was associated with an incremental cost of $12,523 and an estimated 0.29 more quality-adjusted life years (QALYs), corresponding to an incremental cost-effectiveness ratio (ICER) of $42,797/QALY gained. At a willingness-to-pay of $50,000 and $100,000/QALY gained, there is a probability of 70.4% and 98.8%, respectively, that IPE is a cost-effective strategy over placebo. The deterministic model yielded similar results. In the deterministic sensitivity analyses, the ICER varied between $31,823-$70,427/QALY gained. Scenario analyses revealed that extending the timeframe of the model to a lifetime horizon resulted in an ICER of $32,925/QALY gained.Conclusion: IPE represents an important new treatment for the reduction of ischemic CV events in statin-treated patients with elevated triglycerides. Based on the clinical trial evidence, we found that IPE could be a cost-effective strategy for treating these patients in Canada.Keywords: cardiovascular diseases, icosapent ethyl, IPE, cost-effectiveness, cost per QALY
- Published
- 2023
188. Developing One Health surveillance systems
- Author
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Hayman, David T.S., Adisasmito, Wiku B., Almuhairi, Salama, Behravesh, Casey Barton, Bilivogui, Pépé, Bukachi, Salome A., Casas, Natalia, Becerra, Natalia Cediel, Charron, Dominique F., Chaudhary, Abhishek, Ciacci Zanella, Janice R., Cunningham, Andrew A., Dar, Osman, Debnath, Nitish, Dungu, Baptiste, Farag, Elmoubasher, Gao, George F., Khaitsa, Margaret, Machalaba, Catherine, Mackenzie, John S., Markotter, Wanda, Mettenleiter, Thomas C., Morand, Serge, Smolenskiy, Vyacheslav, Zhou, Lei, and Koopmans, Marion
- Published
- 2023
- Full Text
- View/download PDF
189. Indirect impact of the COVID-19 pandemic on the care and outcomes of people with MS: A combined survey and insurance claims study
- Author
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Meltzer, Ethan, Charron, Odelin, Wozny, Joe, Onuorah, Helen, Montague, Amanda, Kline, Alexis Crispino, Largent, Avery, Krause, Trudy Millard, and Freeman, Leorah
- Published
- 2023
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190. Update on Pediatric Nuclear Medicine in Acute Care
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Chin, Joshua, Vali, Reza, Charron, Martin, and Shammas, Amer
- Published
- 2023
- Full Text
- View/download PDF
191. Modern immunology is crucial to revealing the biological mechanisms of traditional Chinese medicine
- Author
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Ju, Liya, Jiang, Jian, Jin, Ye, Armand, Jean-Pierre, and Charron, Dominique
- Published
- 2023
- Full Text
- View/download PDF
192. Advanced practice physiotherapists can diagnose and triage patients with musculoskeletal disorders while providing effective care: a systematic review
- Author
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Lafrance, Simon, Vincent, Raphaël, Demont, Anthony, Charron, Maxime, and Desmeules, François
- Published
- 2023
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- View/download PDF
193. 5. Impact psychosocial du test génétique prédictif dans les maladies cardiaques héréditaires
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Bordet, Céline, primary, Brice, Sandrine, additional, Tezenas du Montcel, Sophie, additional, Gargiulo, Marcela, additional, and Charron, Philippe, additional
- Published
- 2023
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194. Unpacking Canada’s Arctic Shipping Safety, Security, and Defence Functions
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Charron, Andrea, primary and Snider, David, additional
- Published
- 2023
- Full Text
- View/download PDF
195. Synchronization modulo P in dynamic networks.
- Author
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Louis Penet de Monterno, Bernadette Charron-Bost, and Stephan Merz
- Published
- 2023
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196. Models of Herpes Simplex Virus Latency
- Author
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Paige N. Canova, Audra J. Charron, and David A. Leib
- Subjects
latency ,reactivation ,HSV ,in vivo and in vitro models ,organoids ,Microbiology ,QR1-502 - Abstract
Our current understanding of HSV latency is based on a variety of clinical observations, and in vivo, ex vivo, and in vitro model systems, each with unique advantages and drawbacks. The criteria for authentically modeling HSV latency include the ability to easily manipulate host genetics and biological pathways, as well as mimicking the immune response and viral pathogenesis in human infections. Although realistically modeling HSV latency is necessary when choosing a model, the cost, time requirement, ethical constraints, and reagent availability are also equally important. Presently, there remains a pressing need for in vivo models that more closely recapitulate human HSV infection. While the current in vivo, ex vivo, and in vitro models used to study HSV latency have limitations, they provide further insights that add to our understanding of latency. In vivo models have shed light on natural infection routes and the interplay between the host immune response and the virus during latency, while in vitro models have been invaluable in elucidating molecular pathways involved in latency. Below, we review the relative advantages and disadvantages of current HSV models and highlight insights gained through each.
- Published
- 2024
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- View/download PDF
197. The Mamba: A Suspended Manipulator to Sample Plants in Cliff Environments
- Author
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Hughes La Vigne, Guillaume Charron, David Rancourt, and Alexis Lussier Desbiens
- Subjects
suspended manipulator ,aerial manipulation ,robot for environment ,cliff drone ,conservation drone ,plant sampling drone ,Motor vehicles. Aeronautics. Astronautics ,TL1-4050 - Abstract
Conservation efforts in cliff habitats pose unique challenges due to their inaccessibility, limiting the study and protection of rare endemic species. This project introduces a novel approach utilizing aerial manipulation through a suspended manipulator attached with a cable under a drone to address these challenges. Unlike existing solutions, the Mamba provides a horizontal reach up to 8 m to approach cliffs while keeping the drone at a safe distance. The system includes a model-based control system relying solely on an inertial measurement unit (IMU), reducing sensor requirements and computing power to minimize overall system mass. This article presents novel contributions such as a double pendulum dynamic modeling approach and the development and evaluation of a precise control system for sampling operations. Indoor and outdoor tests demonstrate the effectiveness of the suspended aerial manipulator in real-world environments allowing the collection of 55 samples from 28 different species. This research signifies a significant step toward enhancing the efficiency and safety of conservation efforts in challenging cliff habitats.
- Published
- 2024
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- View/download PDF
198. Potential of the Cogex Software Platform to Replace Logbooks in Capstone Design Projects
- Author
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Foley, David, Charron, François, and Plante, Jean-Sébastien
- Abstract
Recent technologies are offering the power to share and grow knowledge and ideas in unprecedented ways. The CogEx software platform was developed to take advantage of the digital world with innovative ideas to support designers work in both industrial and academic contexts. This paper presents a qualitative study on the usage of CogEx during capstone design projects in mechanical engineering. It explores its potential to eventually supersede a paper logbook. This study combines three pilot projects where 15 undergraduate students used CogEx for one semester and discussed their experience in a final interview. The focus is limited to individual usage in this study. Results support that the platform has a good potential for engineering design education by replacing the paper logbook. The "extended concept mapping" structure was efficient to organize design work, and although the "concept-knowledge" separation needs refinement, it has good potential in building designer knowledge base.
- Published
- 2018
199. Correction: The One Health High-Level Expert Panel (OHHLEP)
- Author
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Thomas C. Mettenleiter, Wanda Markotter, Dominique F. Charron, Wiku B. Adisasmito, Salama Almuhairi, Casey Barton Behravesh, Pépé Bilivogui, Salome A. Bukachi, Natalia Casas, Natalia Cediel Becerra, Abhishek Chaudhary, Janice R. Ciacci Zanella, Andrew A. Cunningham, Osman Dar, Nitish Debnath, Baptiste Dungu, Elmoubasher Farag, George F. Gao, David T. S. Hayman, Margaret Khaitsa, Marion P. G. Koopmans, Catherine Machalaba, John S. Mackenzie, Serge Morand, Vyacheslav Smolenskiy, and Lei Zhou
- Subjects
Environmental sciences ,GE1-350 ,Public aspects of medicine ,RA1-1270 - Published
- 2024
- Full Text
- View/download PDF
200. Variety of shopping modes: theoretical framework, pivotal factors, and managerial implications
- Author
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Ignacio Redondo and Jean-Philippe Charron
- Subjects
shopping behaviour ,consumer segmentation ,e-commerce ,showrooming ,webrooming ,channel management ,Business ,HF5001-6182 - Abstract
With the development of e-commerce and smartphones, consumers can use a variety of shopping modes (i.e., showrooming, webrooming, and completely offline/online shopping), each of which provides specific advantages in terms of price, assortment, service, etc. Using a great variety of these shopping modes can confer many benefits. However, previous studies have found evidence of sizable segments of consumers who typically avoid using a great variety of shopping modes. To understand the contrast in consumers’ variety of shopping modes, we propose a theoretical framework and measure the effect of the desired variety in the information-seeking and purchase processes. Results – from a representative sample of the Spanish consumers – confirm that the variety of shopping modes pivots on the extent to which e-commerce use, smartphone use, offline and online interactivity, and online device interchangeability differ. Better understanding the variety of shopping modes may help marketers adjust their channel strategies to the actual preferences of different consumer segments and assess the economic viability of an omnichannel approach.
- Published
- 2023
- Full Text
- View/download PDF
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