15,856 results on '"Ying Yang"'
Search Results
102. The therapeutic potential of PX-478 in a murine model of pelvic organ prolapse
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Wei-Min Fan, Yu-Qi Yang, Li-Wen Zhang, Xiao-Hui Mei, Ke Sun, Duan-Qing Wu, Ying Yang, Chun-Fang Duan, Jun Ye, and Ru-Jun Chen
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Pelvic organ prolapse (POP) ,fibroblasts ,hypoxia-inducible factor-1α (HIF-1α) ,PX-478 ,macrophages ,inflammation ,Gynecology and obstetrics ,RG1-991 - Abstract
Background Pelvic organ prolapse (POP), characterised by the downward displacement of pelvic organs, is a prevalent disorder that affects adult women. This study explored the therapeutic potential of PX-478, a selective hypoxia-inducible factor-1α (HIF-1α) inhibitor, in a murine POP model.Methods A murine POP model was established through ovariectomy, mimicking oestrogen deprivation. Fifteen C57BL/6J mice were randomly assigned to control, POP, and PX-478 groups. PX-478, targeting HIF-1α, was administered intravaginally. The analysis of fibroblasts, macrophage and inflammation was performed through Masson staining, immunofluorescence, and ELISA. Collagen distribution was assessed using Sirius Red staining. Expression levels of matrix metalloproteinases (MMPs) and tissue inhibitors of metalloproteinases (TIMP-1) were determined through immunohistochemistry and western blot. Fibroblast proliferation and apoptosis were evaluated by CCK-8 assay and flow cytometry.Results PX-478 treatment significantly reduced vaginal length, indicating a therapeutic effect on POP severity. Masson staining revealed reduced fibrotic changes and collagen disruption in PX-478-treated mice. Immunofluorescence showed increased fibroblast markers (Vimentin, α-SMA) and collagen fibres by PX-478. Sirius Red staining indicated PX-478 mitigated damage to Type I and Type III collagen fibres. PX-478 significantly reduced MMP-2 and MMP-9 expression while increased TIMP-1. In macrophages, PX-478 decreased M1 and M2 markers (CD80, CD206) and IL-18 secretion. Fibroblasts exhibited increased proliferation, reduced apoptosis, and altered MMP/TIMP expression under PX-478 influence.Conclusion PX-478 demonstrates a therapeutic potential in the mice POP model. It reduces vaginal length, attenuates fibrosis, and modulates collagen synthesis. Its immunomodulation is evident through reduced M1 and M2 macrophages and suppressed IL-18 secretion.
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- 2024
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103. Effects of dietary nano-selenium on the growth performance, antioxidant capacity, immunity and intestinal microbiota of Tibetan naked carp (Gymnocypris przewalskii)
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Yanxia Chen, Caixia He, Ying Yang, Linan Wang, Zhaonan Li, Qingchun Yan, Tianxiu Liang, Changhong Bao, Wenjie Jin, and Changzhong Li
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Gymnocypris przewalskii ,Feed additives ,Antioxidant capacity ,Immune response ,Intestinal health ,Aquaculture. Fisheries. Angling ,SH1-691 - Abstract
This study aimed to investigate the effects of nano-selenium (nano-se) as a dietary supplement on Tibetan naked carp (Gymnocypris przewalskii) and six separate groups were conducted (0 mg/kg, NSEC; 2 mg/kg, NSE2; 4 mg/kg, NSE4; 7 mg/kg, NSE7; 9 mg/kg, NSE9; and 11 mg/kg, NSE11). The growth performance, hemato-biochemical activity, antioxidant activity, immune indices, and intestinal microbiota were subsequently measured at the end of the feeding experiment. The results showed that the hepatosomatic index, viscerosomatic index and condition factor were significantly greater in the NSE4 group (P < 0.05). The NSE4 group presented the highest specific growth rate and weight gain rate, whereas the NSE11 group presented the lowest rates. The survival rate was greater in the NSE2, NSE4, and NSE9 groups, whereas it was lowest in the NSE11 group. The contents of TP and TG and the activities of T-AOC, GSH-Px, T-SOD, CAT and GR first increased but then decreased with increasing dietary selenium content. Compared with the other groups, the NSE4 group presented comparatively lower levels of proinflammatory factors such as IL-1β, IL-6, and TNF-α, but higher amounts of lysozyme LZM and immunoglobulin IgM. The NSE4 and NSE2 groups presented considerably increased levels of anti-inflammatory factors (IL-10 and TGF-β) (P < 0.05). Dietary supplementation with an appropriate amount of nano-se can improve liver vacuolationand hepatocyte swelling in G. przewalskii, but excessive nano-se could cause liver damage. In addition, the results of intestinal microbiota detection revealed that dietary nano-se could improve the diversity of the intestinal microbiota and increase the abundance of beneficial bacteria in G. przewalskii. This research will enhance our understanding of the possible uses of nano-se and lay the groundwork for increasing the resource efficiency of G. przewalskii breeding and releasing.
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- 2024
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104. Erxian decoction ameliorates myocardial tissue damage through activating PI3K/AKT signaling pathway in ovariectomized rats
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Ying Yang, Haixia Liu, Jing Hu, Yujie Ma, Pei Li, Zhiguo Zhang, and Yanjing Chen
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Erxian decoction ,network pharmacology ,molecular docking ,PI3K/AKT signaling pathway ,myocardial apoptosis ,inflammatory ,Medicine - Abstract
Background Erxian decoction (EXD) is an empirical formula for treating cardiovascular disease, our previous work has shown that EXD could improve the cardiovascular structure and function in ovariectomized (OVX) rats, but its pharmacological mechanism is still unclear.Materials and Methods Network pharmacology was utilized to assess the key active components and central targets of EXD in treating postmenopausal cardiovascular disease. Then, an OVX rat model was established, HE staining and transmission electron microscope were utilized to observe myocardial tissue morphology, TUNEL staining was utilized to detect cardiomyocyte apoptosis, western blot, and ELISA were used to confirm efficacy and pathway of EXD.Results The network pharmacology prediction results showed that 129 common targets were identified by intersecting EXD targets and postmenopausal cardiovascular disease targets, including AKT1, TNF, IL-6, IL-1β, PTGS2 and other core targets, apoptosis, PI3K/AKT, and other signaling pathways may be closely related to postmenopausal cardiovascular disease. After ovariectomy, the myocardial tissue of rats was damaged, the expression level of PI3K/AKT pathway-related molecules in the myocardial tissue were decreased, the apoptosis index of cardiomyocytes was increased, and the levels of inflammatory factors (TNF-α, IL-6, and IL-1β) were enhanced. EXD intervention could improve myocardial tissue injury, EXD could up-regulate the protein expression of PI3K and p-AKT in myocardial tissue, and thereby prevent myocardial cell apoptosis. At the same time, EXD downregulated the levels of inflammatory factors in serum of ovariectomized rats.Conclusion EXD may prevent myocardial tissue damage through induction of the PI3K/AKT signaling pathway, thereby reducing cardiomyocyte apoptosis and inflammation. EXD may be a potential drug for the treatment of postmenopausal cardiovascular disease.
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- 2024
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105. On-demand automated bus services: Opportunities and challenges
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Huizhao Tu, Maria Attard, Ying Yang, Karyn Scerri, Adrian Muscat, and Hao Li
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Transportation engineering ,TA1001-1280 - Published
- 2024
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106. A bacteriocin-based coating strategy to prevent vancomycin-resistant Enterococcus faecium biofilm formation on materials of interest for indwelling medical devices
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Christian Kranjec, Jills Puthiaparambil Mathew, Kirill Ovchinnikov, Idowu Fadayomi, Ying Yang, Morten Kjos, and Wen-Wu Li
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Antibiotic resistance ,Bacteriocins ,Biofilm ,Enterococcus faecium ,PEEK ,Titanium ,Biotechnology ,TP248.13-248.65 ,Microbiology ,QR1-502 - Abstract
The ever-increasing use of exogenous materials as indwelling medical devices in modern medicine offers to pathogens new ways to gain access to human body and begin, in some cases, life threatening infections. Biofouling of such materials with bacteria or fungi is a major concern during surgeries, since this is often associated with biofilm formation and difficult to treat, recalcitrant infections. Intense research efforts have therefore developed several strategies to shield the medical devices' surface from colonization by pathogenic microorganisms. Here, we used dopamine as a coupling agent to coat four different materials of medical interest (plastic polyetheretherketone (PEEK), stainless steel, titanium and silicone catheter) with the bacteriocins, enterocin EJ97-short and the thiopeptide micrococcin P1. Water contact angle measurements and x-ray photoelectron spectroscopy were used to verify the effective coating of the materials. The effect of bacteriocins coated on these materials on the biofilm formation by a vancomycin resistant Enterococcus faecium (VRE) strain was studied by biofilm-oriented antimicrobial test (BOAT) and electron scanning microscopy. The in vitro biocompatibility of bacteriocin-modified biomaterials was tested on cultured human cells. The results demonstrated that the binding of the bacteriocins to the implant surfaces is achieved, and the two bacteriocins in combination could inhibit biofilm formation by E. faecium on all four materials. The modified implant showed no cytotoxicity to the human cells tested. Therefore, surface modification with the two bacteriocins may offer a novel and effective way to prevent biofilm formation on a wide range of implant materials.
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- 2024
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107. Why is your paper rejected? Lessons learned from over 5000 rejected transportation papers
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Jiaming Wu, Ivan Sanchez-Diaz, Ying Yang, and Xiaobo Qu
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Publication ,Transportation ,Elsevier ,Rejection ,Transportation engineering ,TA1001-1280 - Abstract
Academic papers are the cornerstone of knowledge dissemination and crucial for researchers’ career development. This is particularly true for rapidly evolving research domains such as transportation, as evidenced by the surge of journals and papers in the past decade. While abundant literature offers guidance on successful publication strategies, insights into the reasons for rejection are rare. This study fills in this gap by examining why papers are rejected in the area of transportation. We present concrete evidence based on data from over 5,000 rejected transport papers. Quantitative analyses are conducted to reveal the impacts of similarity rate, duplication submission rate, and topic on desk rejections. Additionally, we shed light on the distinct focus reviewers have when serving different journals. We hope the results could equip transport researchers with a deeper comprehension of publication criteria and a better awareness of common but avoidable mistakes.
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- 2024
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108. Efficacy of intraoperative systemic lidocaine on quality of recovery after laparoscopic colorectal surgery: a randomized controlled trial
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Wenjun Lin, Ying Yang, Yifen Zhuo, Chunlin Qiu, Yanhua Guo, and Yusheng Yao
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Colorectal surgery ,lidocaine ,pain management ,post-surgical recovery ,Medicine - Abstract
AbstractIntroduction Many clinical trials have demonstrated the benefits of intraoperative systemic lidocaine administration in major abdominal surgeries. We tested the hypothesis that systemic lidocaine is associated with an enhanced early quality of recovery in patients following laparoscopic colorectal resection.Patients and Methods We randomly allocated 126 patients scheduled for laparoscopic colorectal surgery in a 1:1 ratio to receive either lidocaine (1.5 mg kg−1 bolus over 10 min, followed by continuous infusion at 2 mg kg−1 h−1 until the end of surgery) or identical volumes and rates of saline. The primary outcome was the Quality of Recovery-15 score assessed 24 h after surgery. Secondary outcomes were areas under the pain numeric rating scale curve over time, 48-h morphine consumption, and adverse events.Results Compared with saline, systemic lidocaine improved the Quality of Recovery-15 score 24 h postoperatively, with a median difference of 4 (95% confidence interval: 1–6; p = 0.015). Similarly, the area under the pain numeric rating scale curve over 48 h at rest and on movement was reduced in the lidocaine group (p = 0.004 and p
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- 2024
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109. Antibacterial and oral tissue effectiveness of a mouthwash with a novel active system of amine + zinc lactate + fluoride
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Lyndsay M. Schaeffer, Ying Yang, Carlo Daep, Ekta Makwana, Golnaz Isapour, and Norbert Huber
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amine ,gingivitis ,mouthrinse ,zinc lactate ,Dentistry ,RK1-715 - Abstract
Abstract Objectives Reflecting the need for an effective support for the daily oral hygiene routine of patients experiencing (symptoms of) gum inflammation, a new mouthwash has been developed containing an amine + zinc lactate + fluoride system. The in vitro efficacy of this product was assessed using traditional laboratory methods, as well as novel experimentation. Materials and Methods This mouthwash has been evaluated in a series of laboratory tests including two short interval kill tests (SIKTs), a 12‐h (longer term) biofilm regrowth assay, a plaque glycolysis assay, and an aerobic, repeated exposure biofilm model, as well as tests for soft tissue uptake and LPS neutralization. Results Several laboratory studies demonstrate that a mouthwash containing an amine + zinc lactate + fluoride system provides short‐term and long‐term antibacterial activity. While the immediate efficacy of this formula has been shown to be driven by the presence of the amine, zinc lactate provides a long‐term antibacterial effect, as well as is able to inhibit bacterial metabolism. Conclusions This research provides the basis for understanding the mode of action of this new mouthwash formulation and explains the previously observed clinical efficacy of this formula against plaque and gingivitis.
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- 2024
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110. Tumor microenvironment biomarkers predicting pathological response to neoadjuvant chemoimmunotherapy in locally advanced esophageal squamous cell carcinoma: post-hoc analysis of a single center, phase 2 study
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Qian Li, Tingting Feng, Jing Zhu, Chang Yu, Ying Yang, Qixun Chen, Dan Su, Xiaotian Zhang, Changbin Zhu, Rui Zhu, Tingting Lu, Liwei Xu, Lisha Ying, Canming Wang, Weiming Xu, Jinchao Wang, Minran Huang, Chenyang Xu, and Jiaoyue Jin
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Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Background Neoadjuvant chemoimmunotherapy has a promising effect on locally advanced esophageal squamous cell carcinoma (ESCC). However, reliable biomarkers robustly predicting therapeutic response are still lacking.Methods Formalin-fixed and paraffin-embedded pre-neoadjuvant chemoimmunotherapy biopsy samples from locally advanced ESCC patients were collected. Cohort 1 composed of 66 locally advanced ESCC patients from a prospective clinical trial (NCT04506138) received two cycles of camrelizumab in combination with nab-paclitaxel and carboplatin every 3 weeks. Cohort 2 included 48 patients receiving various types of immune checkpoint inhibitors with (nab-)paclitaxel and platinum-based chemotherapy as neoadjuvant therapy. Cohort 3 consisted of 27 ESCC patients receiving neoadjuvant treatment of toripalimab with chemotherapy and was used as the external validation dataset. Targeted RNA sequencing, immunohistochemistry for programmed death ligand 1 (PD-L1), and multiplex immunofluorescence (mIF) imaging were performed.Results Integration of targeted RNA sequencing, PD-L1 immunohistochemistry, and mIF revealed a significant immune-suppressive microenvironment with higher neutrophil infiltration, enriched TGF-β, and cell cycle pathways in non-pathological complete response (non-pCR) patients. NK, activated CD4+ T cell infiltration, interferon-gamma, antigen processing and presentation, and other immune response signatures were significantly associated with pCR. Based on discovered tumor microenvironmental characteristics and their closely related genes were screened. Consequently, a seven-gene neoadjuvant chemoimmunotherapy risk prediction signature (NCIRPs) model, was constructed. In addition to cohort 1, this model alone or with PD-L1-combined positive score (CPS) demonstrated a higher prediction accuracy of pathological response than PD-L1 CPS or other routinely used immune signatures, such as IFN-γ, in cohorts 2 and 3. Neither prognostic association nor correlation with response to chemoradiotherapy was observed in The Cancer Genome Atlas Program ESCC dataset or in ESCC patients in the neoadjuvant chemoradiotherapy cohort (cohort 4).Conclusion The NCIRPs model that was developed and validated using treatment-naïve endoscopic samples from the largest ESCC neoadjuvant chemoimmunotherapy dataset represents a robust and clinically meaningful approach to select a putative responder for neoadjuvant chemoimmunotherapy in locally advanced ESCC patients.
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- 2024
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111. Single‐cell transcriptome analysis deciphers the CD74‐mediated immune evasion and tumour growth in lung squamous cell carcinoma with chronic obstructive pulmonary disease
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Denian Wang, Sixiang Li, Zhi Yang, Chunyan Yu, Pengfei Wu, Ying Yang, Rui Zhang, Qingyan Li, Jian Yang, Hongchun Li, Guiyi Ji, Yan Wang, Kang Xie, Yanyan Liu, Kaige Wang, Daxing Zhu, Wengeng Zhang, Dan Liu, Bojiang Chen, and Weimin Li
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CD74 ,chronic obstructive pulmonary disease ,immune evasion ,lung squamous cell carcinoma ,single‐cell RNA sequencing ,Medicine (General) ,R5-920 - Abstract
Abstract Background Chronic obstructive pulmonary disease (COPD) contributes to the incidence and prognosis of lung cancer. The presence of COPD significantly increases the risk of lung squamous cell carcinoma (LSCC). COPD may promote an immunosuppressive microenvironment in LSCC by regulating the expression of immune‐inhibitory factors in T cells, although the mechanisms remain unclear. In this study, we aimed to decipher the tumour microenvironment signature for LSCC with COPD at a single‐cell level. Methods We performed single‐cell RNA sequencing on tumour tissues from LSCC with or without COPD, then investigated the features of the immune and tumour cells. We employed multiple techniques, including multispectral imaging, flow cytometry, tissue microarray analysis, survival analysis, co‐culture systems and in vitro and in vivo treatment experiments, to validate the findings obtained from single‐cell analyses. Results LSCC with COPD showed increased proportions of tumour‐associated macrophages (TAMs) and higher levels of CD8+ T cell exhaustion molecules, which contributed to an immunosuppressive microenvironment. Further analysis revealed a critical cluster of CD74+ tumour cells that expressed both epithelial and immune cell signatures, exhibited a stronger capacity for tumorigenesis and predicted worse overall survival. Notably, migration inhibitory factor (MIF) secreted by TAMs from LSCC with COPD may promote the activation of CD74. MIF‐CD74 may interact with CD8+ T cells and impair their anti‐tumour activity by regulating the PI3K‐STAT3‐programmed cell death‐1 ligand 1 signalling pathway, facilitating tumour proliferation and immune evasion. Conclusions Our comprehensive picture of the tumour ecosystem in LSCC with COPD provides deeper insights into relevant immune evasion mechanisms and potential targets for immunotherapy. Highlight Our results demonstrated higher proportions of tumour‐associated macrophages (TAMs) and higher levels of exhaustion molecules in CD8+ T cells in the microenvironment of LSCC with COPD. CD74+tumour cells were associated with poor disease prognosis. Migration inhibitory factor (MIF)‐CD74 may interact with CD8+ T cells and impair their anti‐tumour activity by regulating the PI3K‐STAT3‐PD‐L1 signalling pathway, facilitating immune evasion.
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- 2024
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112. A cuproptosis-related prognostic signature for guiding clinical diagnosis and treatment in uveal melanoma patients
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Ying Yang, Qixuan Li, Jia Chen, Yangchen Guo, Yu Cai, Wenmin Zhao, Shu Su, and Aimin Sang
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Cuproptosis ,Uveal melanoma (UM) ,Prognostic signature ,Immune microenvironment ,DLD ,DLST ,Science (General) ,Q1-390 ,Social sciences (General) ,H1-99 - Abstract
Background: Cuproptosis, one of the most recently discovered forms of cell death, is induced by the disruption of copper binding to the mitochondrial respiratory acylation components. However, the mechanism underlying cuproptosis in uveal melanoma (UM) has not yet been adequately studied. Methods: RNA and clinical data were obtained from The Cancer Genome Atlas (TCGA) database. Differentially expressed cuproptosis-related genes were identified by R software. A prognostic signature was constructed by applying LASSO regression and Cox regression models. The associations between the signature and the immune microenvironment, overall survival, and drug sensitivity were studied. In addition, qPCR and Western blotting were performed on UM cells and RPE cell lines to verify the expression levels of the genes encoding dihydrolipoamide dehydrogenase (DLD) and dihydrolipoamide S-succinyltransferase (DLST) in UM cases. Results: Using a cuproptosis-related prognostic signature, UM samples were classified into high- and low-risk groups. A significant difference in overall survival between the two risk groups was evident. Receiver operating characteristic curves demonstrated that the signature is a reliable predictor of prognosis. Immune cell infiltration, drug sensitivity, and immune checkpoint expression were analysed. Significant immune difference between the two high-risk groups was found, and the high expression of immune checkpoints in high-risk groups suggests significant immunotherapy potential. In addition, drug sensitivity analysis experiments suggest that erlotinib may be a potential treatment for high-risk patients. The results of in vitro experiments confirmed that DLD and DLST had higher expression levels in UM cell lines. Conclusions: The prognostic signature developed in this study is a reliable biomarker for predicting the prognosis of UM and may serve as a tool for personalised treatment of patients with UM.
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- 2024
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113. The effect of future self-continuity on intertemporal decision making: a mediated moderating model
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Ying Yang, Liangxiangwan Zhang, Weiguo Qu, and Wei Fan
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future self-continuity ,self-concept clarity ,future outcome consideration ,intertemporal decision ,mediated moderating model ,Psychology ,BF1-990 - Abstract
Intertemporal decision making refers to the behavior of making decisions after weighing the costs and benefits of two or more outcomes at different time points. This study explores the moderating effect of self-concept clarity on the influence of future self-continuity on intertemporal decision-making and the mediating effect of future outcome consideration, aiming to establish a mediated moderating model. In Study 1, we recruited 370 participants via questionnaire to explore the relationship between future self-continuity and intertemporal decision-making, as well as the moderating effect of self-concept clarity. The results showed that: (1) Future self-continuity significantly negatively predicted the time discount rate of intertemporal decision-making. (2) Self-concept clarity significantly negatively moderated the relationship between future self-continuity and the time discount rate of intertemporal decision-making. In Study 2, we recruited 234 participants using an experimental method and divided them into high and low future self-continuity groups to explore the mediating effect of future outcome consideration and the moderating role of self-concept clarity in the influence of future self-continuity on intertemporal decision-making. The results indicated that: (1) Self-concept clarity significantly negatively moderated the impact of future self-continuity on future outcome consideration. (2) Future outcome consideration mediated the moderating effect of self-concept clarity on the influence of future self-continuity on intertemporal decision-making. The findings indicated that future self-continuity negatively impacted the time discount rate in intertemporal decision-making. Furthermore, self-concept clarity could indirectly regulate the effect of future self-continuity on intertemporal decision-making through future outcome consideration. These two studies contribute to a better understanding of intertemporal decision-making behavior in different states, help reduce cognitive bias through rational analysis of current states, achieve maximum life benefits, and enrich empirical research in the fields of future self-continuity and intertemporal decision-making.
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- 2024
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114. Lifestyle, air pollution, and risk of multimorbidity in a prospective analysis of the UK Biobank cohort
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Fei Chen, Ying Yang, Liping Yu, Lulu Song, Jinping Zhang, Xin Wang, Xian Jin, Wanlu Ma, and Bo Zhang
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ischaemic heart disease ,chronic obstructive pulmonary disease ,multimorbidity ,trajectory ,lifestyle ,air pollution ,Science (General) ,Q1-390 ,Social sciences (General) ,H1-99 - Abstract
Background: Although associations between chronic obstructive pulmonary disease (COPD) or ischaemic heart disease (IHD) and lifestyle factors or air pollution factors (referred as LAFs below) are well-established, it is unclear the influences of LAFs on the trajectory of IHD and COPD multimorbidity (referred as ICM below). Therefore, this study investigated the influences of LAFs on the trajectory of ICM from healthy to IHD or COPD, to ICM, and to all-cause death. Methods: A cohort of 339,213 participants from the UK Biobank aged 37–73 who were free of IHD and COPD were included. A multi-state model was used to analyse the influences of high-risk factors including current smoking or quitting due to illness or physician's advice, current excessive alcohol drinking, physical inactivity, unhealthy body shape, and excessive air pollution with particulates matter with an aerodynamic diameter ≤2.5 μm (PM2.5) on ICM trajectory. Results: During a median follow-up of 13.74 years, 46,398 participants developed IHD or COPD (referred as IOC below), 3949 developed ICM, and 35,691 died from any cause. All five high-risk factors played crucial but different roles in these transitions. The hazard ratios (95 % confidence intervals) per one-factor increase were 1.29 (1.27–1.3), 1.38 (1.33–1.44), and 1.69 (1.56–1.84) for transitions from baseline to IOC, from IOC to ICM, and from baseline to ICM and 1.19 (1.17–1.21), 1.18 (1.15–1.21), and 1.12 (1.05–1.19) for mortality risk from baseline to all-cause death, from IOC to all-cause death, and from ICM to all-cause death, respectively. Conclusions: Our study revealed that LAFs have a stronger impact on morbidity outcomes than on morbidity outcomes. These findings provide evidence to develop strategies for managing the trajectory of ICM.
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- 2024
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115. Nano-drug delivery systems (NDDS) in metabolic dysfunction-associated steatotic liver disease (MASLD): current status, prospects and challenges
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Ying Yang and Xiaojing Wang
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metabolic dysfunction-associated steatotic liver disease ,MASLD ,nano-drug delivery system ,NDDS ,nanocarrier ,nanoparticle ,Therapeutics. Pharmacology ,RM1-950 - Abstract
About one-third of the global population suffers from metabolic dysfunction-associated steatotic liver disease (MASLD), but specific treatments for MASLD have long been lacking, primarily due to the unclear etiology of the disease. In addition to lifestyle modifications and weight loss surgery, pharmacotherapy is the most common treatment among MASLD patients, and these drugs typically target the pathogenic factors of MASLD. However, bioavailability, efficacy, and side effects all limit the maximum therapeutic potential of the drugs. With the development of nanomedicine, recent years have seen attempts to combine MASLD pharmacotherapy with nanomaterials, such as liposomes, polymer nanoparticles, micelles, and cocrystals, which effectively improves the water solubility and targeting of the drugs, thereby enhancing therapeutic efficacy and reducing toxic side effects, offering new perspectives and futures for the treatment of MASLD.
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- 2024
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116. Antibacterial and antioxidant phlorizin-loaded nanofiber film effectively promotes the healing of burn wounds
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Ying Yang, Shuang Ma, Anning Li, Guofeng Xia, Min Li, Chuanbo Ding, Xiaofei Sun, Li Yan, Min Yang, and Ting Zhao
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chitosan ,phlorizin ,nanofiber membrane ,scalding wound repair ,wound dressing ,Biotechnology ,TP248.13-248.65 - Abstract
Burns usually result in damage and loss of skin forming irregular wound wounds. The lack of skin tissue protection makes the wound site highly vulnerable to bacterial infections, hindering the healing process. However, commonly used wound dressings do not readily provide complete coverage of irregular wounds compared to regular wounds. Therefore, there is an urgent need to prepare a wound dressing with high antimicrobial efficacy for the administration of drugs to irregular wounds. In this study, a chitosan (CS)/polyvinylpyrrolidone (PVP) composite nanofiber membrane (CS/PVP/Phlorizin) loaded with root bark glycosides (Phlorizin) was developed using an electrostatic spinning technique. The incorporation of phlorizin, a natural antioxidant, into the fiber membranes notably boosted their antimicrobial and antioxidant capabilities, along with demonstrating excellent hydrophilic characteristics. In vitro cellular experiments showed that CS/PVP/Phlorizin increased Hacat cell viability with the presence of better cytocompatibility. In scald wound healing experiments, Phlorizin-loaded nanofibrous membranes significantly promoted re-epithelialization and angiogenesis at the wound site, and reduced the inflammatory response at the wound site. Therefore, the above results indicate that this nanofiber membrane is expected to be an ideal dressing for burn wounds.
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- 2024
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117. Risk factors for bronchiolitis obliterans complicating adenovirus pneumonia in children: a meta-analysis
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Mei-mei Yao, Tian-ji Gao, Min Zhao, Yan-hua Fu, Jing Liu, Tian-jiao Wang, and Ying Yang
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children ,adenovirus pneumonia ,bronchiolitis obliterans ,risk factor ,post-infectious bronchiolitis obliterans (PIBO) ,Pediatrics ,RJ1-570 - Abstract
ObjectiveTo preliminarily explore the risk factors for post-infectious bronchiolitis obliterans (PIBO) complicating adenovirus pneumonia (ADVP) in children through a meta-analysis.MethodsA systematic search was conducted on three English-language databases (PubMed, Web of Science and The National Library of Medicine) and two Chinese-language databases (China National Knowledge Infrastructure and the Wanfang Database) between database inception and 1 January 2023. Data analysis was conducted using Stata 15.1 software.ResultsA total of 10 articles, reporting 14 risk factors, were included in the analysis, with 8 risk factors taken into consideration. Through the meta-analysis, 5 risk factors were identified for PIBO complicating ADVP in paediatric patients: hypoxaemia [odds ratio (OR) = 9.37, 95% CI: 4.22, 20.77, p
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- 2024
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118. Temporal variations in absorption and translocation of heavy metal(loid)s in pak choi (Brassica rapa L.) under open-field and greenhouse cultivation
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Chun Cao, Bin-Yue Liang, Ying Yang, Dan Ren, Qian-Hui Tang, Chen-Wen Wang, Zhen Li, and Junjian Wang
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Farmland management ,Heavy metals ,Vegetable consumption ,Bioaccumulation ,Human health risks ,Environmental pollution ,TD172-193.5 ,Environmental sciences ,GE1-350 - Abstract
Elucidating the absorption and translocation of heavy metal(loid)s by common vegetables across different growth environments and stages is crucial for conducting accurate environmental risk assessments and for associated control. This study investigated temporal variations in the absorption and translocation capacities of pak choi (Brassica rapa L.) for As, Cd, Cr, Cu, Pb, and Zn in polluted soils during the plant growth cycle under greenhouse and open-field cultivation modes. Results showed high root metal(loid) bioconcentration factors and root-to-shoot translocation factors for Cd (0.25 and 1.44, respectively) and Zn (0.26 and 1.01), but low values for As (0.06 and 0.88) and Pb (0.06 and 0.87). The Cd concentration in the aerial edible parts peaked during the early slow growth period, whereas other heavy metal(loid)s peaked during the later stable maturity period. Root bioconcentration and root-to-shoot translocation factors did not significantly differ between cultivation modes. However, greenhouse cultivation exhibited lower average Cd and Zn concentrations in the edible parts and cumulative uptake amounts of most metal(loid)s than open-field cultivation during the typical harvest period spanning days 60 and 90. Short-term transitioning from open-field to greenhouse cultivation may reduce health risks associated with heavy metal(loid) intake via pak choi consumption. These findings facilitate sustainable agricultural practices and food safety management.
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- 2024
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119. Dendrobium officinale polysaccharides alleviated DSS-induced ulcerative colitis in mice through remolding gut microbiota to regulate purine metabolism
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Jingrui Li, Wenyang Tao, Wanyi Zhou, Jianrong Xing, Mengfan Luo, Shengmin Lu, and Ying Yang
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Dendrobium officinale ,Polysaccharides ,Ulcerative colitis ,Gut microbiota ,Metabolomics ,Nutrition. Foods and food supply ,TX341-641 - Abstract
Dendrobium officinale (DO) has no side effects and has been used for centuries to treat gastrointestinal diseases in China. Polysaccharides are the primary components of DO (referred to as DOP). In this study, leaf polysaccharides (DOPY) and stem polysaccharides (DOPJ) were extracted to investigate the protective effect on dextran sodium sulfate (DSS)-induced ulcerative colitis (UC) in mice and explore its mechanisms of action through analyzing the intestinal microbiota and metabolites in cecum contents. The results showed that DOP reduced the disease activity index (DAI), improved colonic pathology, and protected the integrity of the intestinal barrier (Occludin and Muc2) in UC mice. 16S rRNA sequencing suggested that DOP increased the abundance of beneficial bacteria (Turicibacter and Romboutsia) and reduced the abundance of harmful bacteria (Escherichia-Shigella and Parvibacter). Metabolomic analysis revealed that DOP regulated purine metabolism in the intestine, thereby maintaining intestinal mucosal immune homeostasis. These findings suggested that DOP exerted promising protection against DSS-induced ulcerative mice through remolding gut microbiota to regulate purine metabolism.
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- 2024
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120. Electronic properties tailoring of th-XN (X = B, al) by surface functionalization
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Yajie Zhu, Ying Yang, Na Zhu, Chen Wang, Xihao Peng, Tao Lin, and Li He
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Boron nitride ,Aluminum nitride ,Surface functionalization ,Two-dimensional ,Semiconductor ,Industrial electrochemistry ,TP250-261 - Abstract
Hydrogenation and fluorination is a significant method to tune the electronic properties of two-dimensional (2D) materials. This paper theoretically predicted and analyzed the effects and regulatory mechanisms of surface functionalization on the electronic properties of 2D semiconductor tetrahex Boron/Aluminium Nitride (th-BN/th-AlN). The density-functional theory (DFT) calculations were employed to study various trends of band structure, effective mass, and work function. The results show that the electronic properties of 2D th-BN/th-AlN are susceptible to the surface adsorption atom species and coverage. Interconversions between semiconductor and metal properties or indirect and direct band structures in 2D th-XN (X = B, Al) can be realized by hydrogen and fluorine surface adsorption. The band gap expands and the work function decreases after H atom is adsorbed on the surface, while the band gap first increases and then decreases and the work function expands after F is adsorbed on the surface. After functionalization, the effective mass of the hole will be reduced to even lighter than that of an electron in certain directions. The change mechanisms of electronic properties in th-BN/AlN is surface adsorbed atoms will cause sp2-hybridized atoms to turn into sp3-hybridized atoms, which leads to the polarized double bonds between adjacent atoms becoming a single σ bond. The chemical bond changing will result in the band near the Fermi level gradually disappearing.
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- 2024
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121. Succinylation of 14–3–3 theta by CPT1A promotes survival and paclitaxel resistance in nasal type extranodal natural killer/T-cell lymphoma
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Xiao Cui, Chengcheng Cao, Xinyang Li, Biyan Lin, Aihui Yan, and Ying Yang
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Extranodal natural killer/T-cell lymphoma ,Carnitine palmitoyltrasferase 1A ,14–3–3theta ,Succinylation ,Proliferation ,Apoptosis ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Background: The aggressive and refractory extranodal natural killer/T-cell lymphoma, nasal type (ENKTL-NT) is a subtype of non-Hodgkin's lymphoma. Succinylation promotes progression in a variety of tumors, but its mechanism in ENKTL-NT is unclear. Methods: Bioinformatic analysis was performed to screen differentially expressed genes in the ENKTL dataset. Cell transfection techniques were used for knockdown and overexpression of genes. The mRNA and protein expression were detected using RT-qPCR and western blot, respectively. Immunohistochemical staining was used to assess protein expression in situ. For the detection of cell proliferation activity, CCK-8, clonal formation, and EDU staining assays were used. Flow cytometry was employed to detect apoptosis. Co-immunoprecipitation was utilized for the identification of protein interactions and succinylation modifications. Results: Succinyltransferase CPT1A was highly elevated in ENKTL-NT and was associated with a dismal prognosis. CPT1A knockdown suppressed SNK-6 cells’ proliferation and induced apoptosis, while these effects were reversed by the overexpression of 14–3–3theta. Co-immunoprecipitation results showed that CPT1A caused succinylation of 14–3–3theta at site of K85, thereby enhancing the protein stability. Suppression of CPT1A-induced succinylation of 14–3–3theta by ST1326 resulted in the inhibition of SNK-6 cell proliferation and increased apoptosis. Paclitaxel combined with knockdown of CPT1A significantly inhibited the proliferation of ENKTL-NT compared to paclitaxel alone. Conclusion: CPT1A induces succinylation of 14–3–3theta at the K85 site, promoting ENKTL-NT proliferation. The anti-ENKTL activity of paclitaxel was improved when combined with CPT1A knockdown.
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- 2024
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122. Incidence and influencing factors of kinesiophobia in patients with chronic heart failure: a scoping review
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Qin Xiang, Xiao-Yun Xiong, Mei-Jun Zhang, Si Liu, Hua Chen, Meng-Die Liu, Ying Wang, and Ying Yang
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Kinesiophobia ,chronic heart failure ,cardiac rehabilitation ,influencing factors ,mental health ,scoping review ,Psychology ,BF1-990 - Abstract
IntroductionKinesiophobia denotes an excessive and irrational apprehension towards physical activity or exercise among patients, stemming from a perception of susceptibility to painful injury or re-injury. Cardiac rehabilitation stands pivotal in the secondary prevention spectrum for individuals with cardiovascular ailments, with exercise constituting a cornerstone of this regimen. However, the emergence of kinesiophobia poses a formidable challenge, diminishing patient adherence to cardiac rehabilitation protocols, particularly among those grappling with chronic heart failure. To bolster exercise-based rehabilitation initiatives in this cohort, a thorough comprehension of the multifaceted factors precipitating kinesiophobia is imperative. This review endeavors to delineate prevailing evidence and prevalence concerning kinesiophobia triggers in chronic heart failure patients, while pinpointing research lacunae for future exploration.MethodsEmploying a scoping review methodology, our investigation culled data from diverse scholarly databases, including Embase, PubMed, Scopus, CINAHL, Web of Science, Medline, Sinomed, CNKI, Wangfan, and VIP.ResultsAfter thorough evaluation, 9 studies that met the inclusion criteria were ultimately incorporated.DiscussionOur findings underscore a notable prevalence of kinesiophobia in chronic heart failure patients, predominantly influenced by socio-demographic factors, psychological and cognitive factors, disease and treatment factors, as well as lifestyle and behavior. Armed with these insights, future interventions can be tailored to mitigate kinesiophobia levels, fostering enhanced engagement in exercise-centric cardiac rehabilitation endeavors among patients grappling with chronic heart failure.
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- 2024
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123. Maternal infection with hepatitis B virus before pregnancy and risk of congenital malformations in offspring: a record-linkage study of a large national sample from ChinaResearch in context
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Xuelian Yuan, Xu Ma, Jun Zhu, Ying Yang, Yanping Wang, Jihong Xu, Li Dai, Huimin Li, Zhen Liu, Jing Dong, Ke Wang, Xiaohong Li, and Yuan He
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Maternal infection ,Hepatitis B virus ,Fetus ,Congenital malformations ,Public aspects of medicine ,RA1-1270 - Abstract
Summary: Background: Whether hepatitis B virus (HBV) infection of women prior to pregnancy can influence risk of congenital malformations in offspring remains controversial. We assessed the association between them by considering congenital malformations in the aggregate as well as risk of organs systems using a large national sample of Chinese women. Methods: We performed a record-linkage cohort study of women who participated in National Free Preconception Health Examination Project, between January 1, 2010, and December 31, 2019 for whom data on congenital malformations in their offspring were available from the National Population-Based Birth Defects Surveillance Network. A total of 498,968 linked records were obtained, of which 127,371 were excluded because HBV status before pregnancy was unknown, the records involved multiple pregnancies, or pre-pregnancy examinations were conducted after conception. Based on pre-pregnancy status, mothers were assigned to two categories of HBsAg− or HBsAg+ and, in certain analyses, to three categories of HBsAg−, HBsAg+/HBeAg− or HBsAg+/HBeAg+. Potential associations of serological status with risk of congenital malformations, considered separately or in aggregate, were explored using multilevel logistic regression. Factors that might influence such associations were also explored. Findings: Among the 371,597 women analyzed, 21,482 (5.78%) were HBsAg+ before pregnancy, and 8333 (2.24%) had a fetus or child diagnosed with congenital malformations, composed of 7744 HBsAg− women and 589 HBsAg+ women. HBsAg+ status was associated with increased risk of congenital malformations in the aggregate (OR 1.14, 95% CI 1.03–1.25) and of cardiovascular malformations specifically (OR 1.18, 95% CI 1.03–1.35). HBsAg+/HBeAg− status was associated with significantly higher risk of cardiovascular malformations (OR 1.19, 95% CI 1.01–1.39) as well as reproductive malformations (OR 1.51, 95% CI 1.02–2.23). Associations between HBsAg+ status before pregnancy and risk of congenital malformations was modified by alanine aminotransferase activity (Pinteraction < 0.05). Interpretation: Prepregnancy HBV infection might be associated with fetal malformations. This association needs further investigation to confirm whether it is a causal association, and assess whether antiviral therapy of women with HBsAg+ planning to conceive might reduce the risk of fetal malformations. Funding: The National Health Commission of the People's Republic of China, China; Science and Technology Department of Sichuan Province, China; and the Ministry of Science and Technology of the People's Republic of China.
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- 2024
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124. Graph‐Based Pangenome of Actinidia chinensis Reveals Structural Variations Mediating Fruit Degreening
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Yingzhen Wang, Pengwei Li, Yanyan Zhu, Feng Zhang, Sijia Zhang, Yan He, Ying Wu, Yunzhi Lin, Hongtao Wang, Wangmei Ren, Lihuan Wang, Ying Yang, Runze Wang, Pengpeng Zheng, Yongsheng Liu, Songhu Wang, and Junyang Yue
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Actinidia chinensis ,fruit degreening ,haplotype‐resolved ,pangenome ,structural variations ,Science - Abstract
Abstract Fruit ripening is associated with the degreening process (loss of chlorophyll) that occurs in most fruit species. Kiwifruit is one of the special species whose fruits may maintain green flesh by accumulating a large amount of chlorophyll even after ripening. However, little is known about the genetic variations related to the fruit degreening process. Here, a graph‐based kiwifruit pangenome by analyzing 14 chromosome‐scale haplotype‐resolved genome assemblies from seven representative cultivars or lines in Actinidia chinensis is built. A total of 49,770 non‐redundant gene families are identified, with core genes constituting 46.6%, and dispensable genes constituting 53.4%. A total of 84,591 non‐redundant structural variations (SVs) are identified. The pangenome graph integrating both reference genome sequences and variant information facilitates the identification of SVs related to fruit color. The SV in the promoter of the AcBCM gene determines its high expression in the late developmental stage of fruits, which causes chlorophyll accumulation in the green‐flesh fruits by post‐translationally regulating AcSGR2, a key enzyme of chlorophyll catabolism. Taken together, a high‐quality pangenome is constructed, unraveled numerous genetic variations, and identified a novel SV mediating fruit coloration and fruit quality, providing valuable information for further investigating genome evolution and domestication, QTL genes function, and genomics‐assisted breeding.
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- 2024
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125. A m6A regulators-related classifier for prognosis and tumor microenvironment characterization in hepatocellular carcinoma
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Shaohua Xu, Yi Zhang, Ying Yang, Kexin Dong, Hanfei Zhang, Chunhua Luo, and Song-Mei Liu
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N6-methyladenosine ,WGCNA ,SVM-RFE ,LASSO ,consensus clustering algorithm ,TIICs ,Immunologic diseases. Allergy ,RC581-607 - Abstract
BackgroundIncreasing evidence have highlighted the biological significance of mRNA N6-methyladenosine (m6A) modification in regulating tumorigenicity and progression. However, the potential roles of m6A regulators in tumor microenvironment (TME) formation and immune cell infiltration in liver hepatocellular carcinoma (LIHC or HCC) requires further clarification.MethodRNA sequencing data were obtained from TCGA-LIHC databases and ICGC-LIRI-JP databases. Consensus clustering algorithm was used to identify m6A regulators cluster subtypes. Weighted gene co-expression network analysis (WGCNA), LASSO regression, Random Forest (RF), and Support Vector Machine-Recursive Feature Elimination (SVM-RFE) were applied to identify candidate biomarkers, and then a m6Arisk score model was constructed. The correlations of m6Arisk score with immunological characteristics (immunomodulators, cancer immunity cycles, tumor-infiltrating immune cells (TIICs), and immune checkpoints) were systematically evaluated. The effective performance of nomogram was evaluated using concordance index (C‐index), calibration plots, decision curve analysis (DCA), and receiver operating characteristic curve (ROC).ResultsTwo distinct m6A modification patterns were identified based on 23 m6A regulators, which were correlated with different clinical outcomes and biological functions. Based on the constructed m6Arisk score model, HCC patients can be divided into two distinct risk score subgroups. Further analysis indicated that the m6Arisk score showed excellent prognostic performance. Patients with a high m6Arisk score was significantly associated with poorer clinical outcome, lower drug sensitivity, and higher immune infiltration. Moreover, we developed a nomogram model by incorporating the m6Arisk score and clinicopathological features. The application of the m6Arisk score for the prognostic stratification of HCC has good clinical applicability and clinical net benefit.ConclusionOur findings reveal the crucial role of m6A modification patterns for predicting HCC TME status and prognosis, and highlight the good clinical applicability and net benefit of m6Arisk score in terms of prognosis, immunophenotype, and drug therapy in HCC patients.
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- 2024
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126. Advancing bladder cancer management: development of a prognostic model and personalized therapy
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Xiang Huang, Guotu Du, Ying Yang, Peng Su, Shicheng Chen, Chongjiong Cai, Tianyu Huang, Yu Zeng, Yonggang Tao, Demei Tian, and Neng Zhang
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bladder cancer ,molecular subtypes ,basal squamous ,prognostic model ,single-cell RNA sequencing ,personalized treatment ,Immunologic diseases. Allergy ,RC581-607 - Abstract
BackgroundBladder cancer (BLCA) was recognized as a significant public health challenge due to its high incidence and mortality rates. The influence of molecular subtypes on treatment outcomes was well-acknowledged, necessitating further exploration of their characterization and application. This study was aimed at enhancing the understanding of BLCA by mapping its molecular heterogeneity and developing a robust prognostic model using single-cell and bulk RNA sequencing data. Additionally, immunological characteristics and personalized treatment strategies were investigated through the risk score.MethodsSingle-cell RNA sequencing (scRNA-seq) data from GSE135337 and bulk RNA-seq data from several sources, including GSE13507, GSE31684, GSE32894, GSE69795, and TCGA-BLCA, were utilized. Molecular subtypes, particularly the basal-squamous (Ba/Sq) subtype associated with poor prognosis, were identified. A prognostic model was constructed using LASSO and Cox regression analyses focused on genes linked with the Ba/Sq subtype. this model was validated across internal and external datasets to ensure predictive accuracy. High- and low-risk groups based on the risk score derived from TCGA-BLCA data were analyzed to examine their immune-related molecular profiles and treatment responses.ResultsSix molecular subtypes were identified, with the Ba/Sq subtype being consistently associated with poor prognosis. The prognostic model, based on basal-squamous subtype-related genes (BSSRGs), was shown to have strong predictive performance across diverse clinical settings with AUC values at 1, 3, and 5 years indicating robust predictability in training, testing, and entire datasets. Analysis of the different risk groups revealed distinct immune infiltration and microenvironments. Generally higher tumor mutation burden (TMB) scores and lower tumor immune dysfunction and exclusion (TIDE) scores were exhibited by the low-risk group, suggesting varied potentials for systemic drug response between the groups. Finally, significant differences in potential systemic drug response rates were also observed between risk groups.ConclusionsThe study introduced and validated a new prognostic model for BLCA based on BSSRGs, which was proven effective in prognosis prediction. The potential for personalized therapy, optimized by patient stratification and immune profiling, was highlighted by our risk score, aiming to improve treatment efficacy. This approach was promised to offer significant advancements in managing BLCA, tailoring treatments based on detailed molecular and immunological insights.
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- 2024
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127. An advanced TSMK-FVC approach combined with Landsat 5/8 imagery for assessing the long-term effects of terrain and climate on vegetation growth
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Zhenxian Xu, Xin Shen, Sang Ge, Qinglei Sun, Ying Yang, and Lin Cao
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Landsat time series ,fractional vegetation cover ,spatio-temporal change of vegetation ,topographic factors ,climatic factors ,Plant culture ,SB1-1110 - Abstract
IntroductionAs an exceptional geographical entity, the vegetation of the Qinghai-Tibetan Plateau (QTP) exhibits high sensitivity to climate change. The Baima Snow Mountain National Nature Reserve (BNNR) is located in the south-eastern sector of the QTP, serving as a transition area from sub-tropical evergreen broadleaf forest to high-mountain vegetation. However, there has been limited exploration into predicting the temporal and spatial variability of vegetation cover using anti-interference methods to address outliers in long-term historical data. Additionally, the correlation between these variables and environmental factors in natural forests with complex terrain has rarely been analyzed.MethodsThis study has developed an advanced approach based on TS (Theil-Sen slope estimator) MK (Mann-Kendall test)-FVC (fractional vegetation cover) to accurately evaluate and predict the time and spatial shifts in FVC within the BNNR, utilizing the GEE (Google Earth Engine). The satellite data utilized in this paper consisted of Landsat images spanning from 1986 to2020. By integrating TS and MK methodologies to monitor and assess the FVC trend, the Hurst index was employed to forecast FVC. Furthermore, the association between FVC and topographic factors was evaluated, the partial correlation between FVC and climatic influences was analyzed at the pixel level (30×30m).Results and discussionHere are the results of this research: (1) Overall, the FVC of the BNNR exhibits a growth trend, with the mean FVC value increasing from 59.40% in 1986 to 68.67% in 2020. (2) The results based on the TS-MK algorithm showed that the percentage of the area of the study area with an increasing and decreasing trend was 59.03% (significant increase of 28.04%) and 22.13% (significant decrease of 6.42%), respectively. The coupling of the Hurst exponent with the Theil-Sen slope estimator suggests that the majority of regions within the BNNR are projected to sustain an upward trend in FVC in the future. (3) Overlaying the outcomes of TS-MK with the terrain factors revealed that the FVC changes were notably influenced by elevation. The partial correlation analysis between climate factors and vegetation changes indicated that temperature exerts a significant influence on vegetation cover, demonstrating a high spatial correlation.
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- 2024
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128. Plasma lipidomics profiling in predicting the chemo-immunotherapy response in advanced non-small cell lung cancer
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Hui Jiang, Xu-Shuo Li, Ying Yang, and Rui-Xue Qi
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chemo-immunotherapy ,non-small cell lung cancer ,lipidomics ,biomarker ,LC-MS ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
BackgroundAdvanced non-small cell lung cancer (NSCLC) presents significant treatment challenges, with chemo-immunotherapy emerging as a promising approach. This study explores the potential of lipidomic biomarkers to predict responses to chemo-immunotherapy in advanced non-small cell lung cancer (NSCLC) patients.MethodsA prospective analysis was conducted on 68 NSCLC patients undergoing chemo-immunotherapy, divided into disease control (DC) and progressive disease (PD) groups based on treatment response. Pre-treatment serum samples were subjected to lipidomic profiling using liquid chromatography-mass spectrometry (LC-MS). Key predictive lipids (biomarkers) were identified through projection to latent structures discriminant analysis. A biomarker combined model and a clinical combined model were developed to enhance the prediction accuracy. The predictive performances of the clinical combined model in different histological subtypes were also performed.ResultsSix lipids were identified as the key lipids. The expression levels of PC(16:0/18:2), PC(16:0/18:1), PC(16:0/18:0), CE(20:1), and PC(14:0/18:1) were significantly up-regulated. While the expression level of TAG56:7-FA18:2 was significantly down-regulated. The biomarker combined model demonstrated a receiver operating characteristic (ROC) curve of 0.85 (95% CI: 0.75–0.95) in differentiating the PD from the DC. The clinical combined model exhibited an AUC of 0.87 (95% CI: 0.79–0.96) in differentiating the PD from the DC. The clinical combined model demonstrated good discriminability in DC and PD patients in different histological subtypes with the AUC of 0.78 (95% CI: 0.62–0.96), 0.79 (95% CI: 0.64–0.94), and 0.86 (95% CI: 0.52–1.00) in squamous cell carcinoma, large cell carcinoma, and adenocarcinoma subtype, respectively. Pathway analysis revealed the metabolisms of linoleic acid, alpha-linolenic acid, glycerolipid, arachidonic acid, glycerophospholipid, and steroid were implicated in the chemo-immunotherapy response in advanced NSCLC.ConclusionLipidomic profiling presents a highly accurate method for predicting responses to chemo-immunotherapy in patients with advanced NSCLC, offering a potential avenue for personalized treatment strategies.
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- 2024
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129. Current status and needs of in-service training for psychiatric nurses in 24 provinces of China: a cross-sectional survey
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Xiaolin Tan, Minghao Pan, Zhiying Wan, Ying Yang, Lijuan Zhang, Yu Fang, Xiaofen Li, and Meiyu Shen
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in-service training ,cross-sectional survey ,psychiatric nurses ,needs ,China ,Psychology ,BF1-990 - Abstract
AimTo investigate the current situation and need for post-competence training for psychiatric nurses in China and provide a reference for the development of training programs for psychiatric nurses.DesignA cross-sectional design.MethodsA cross-sectional study was conducted from August to October 2023 with 435 psychiatric nurses from 34 hospitals in 24 provinces of mainland China. A self-administered questionnaire was used for data collection. Descriptive statistics, non-parametric tests, and chi-square tests were used for data analysis.ResultsThe training content for psychiatric nurses is extensive, and the training load is large. Psychiatric nurses have high training demands for first aid knowledge, emergency handling ability, and anti-riot skills. Nurses with different years of experience have different training needs. The training needs of psychiatric nurses in specialized and general hospitals also different.ConclusionThe training status of psychiatric nurses is not consistent with the demand. Managers should combine this with psychiatric nurses’ own work needs to develop practical and effective training programs.
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- 2024
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130. Causality of immune cells on primary sclerosing cholangitis: a bidirectional two-sample Mendelian randomization study
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Pu Wu, Sinan Xie, Yunshi Cai, Hu Liu, Yinghao Lv, Ying Yang, Yucheng He, Bangjie Yin, Tian Lan, and Hong Wu
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primary sclerosing cholangitis (PSC) ,Mendelian randomization (MR) ,immune cells ,genome-wide association study (GWAS) ,causal effect ,Immunologic diseases. Allergy ,RC581-607 - Abstract
BackgroundObservational studies have indicated that immune dysregulation in primary sclerosing cholangitis (PSC) primarily involves intestinal-derived immune cells. However, the causal relationship between peripheral blood immune cells and PSC remains insufficiently understood.MethodsA bidirectional two-sample Mendelian randomization (MR) analysis was implemented to determine the causal effect between PBC and 731 immune cells. All datasets were extracted from a publicly available genetic database. The standard inverse variance weighted (IVW) method was selected as the main method for the causality analysis. Cochran’s Q statistics and MR-Egger intercept were performed to evaluate heterogeneity and pleiotropy.ResultsIn forward MR analysis, the expression ratios of CD11c on CD62L+ myeloid DC (OR = 1.136, 95% CI = 1.032–1.250, p = 0.009) and CD62L-myeloid DC AC (OR = 1.267, 95% CI = 1.086–1.477, p = 0.003) were correlated with a higher risk of PSC. Each one standard deviation increase of CD28 on resting regulatory T cells (Treg) (OR = 0.724, 95% CI = 0.630–0.833, p < 0.001) and CD3 on secreting Treg (OR = 0.893, 95% CI = 0.823–0.969, p = 0.007) negatively associated with the risk of PSC. In reverse MR analysis, PSC was identified with a genetic causal effect on EM CD8+ T cell AC, CD8+ T cell AC, CD28− CD127− CD25++ CD8+ T cell AC, CD28− CD25++ CD8+ T cell AC, CD28− CD8+ T cell/CD8+ T cell, CD28− CD8+ T cell AC, and CD45 RA− CD28− CD8+ T cell AC.ConclusionOur study indicated the evidence of causal effects between PSC and immune cells, which may provide a potential foundation for future diagnosis and treatment of PSC.
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- 2024
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131. Exploratory multi-omics analysis reveals host-microbe interactions associated with disease severity in psoriatic skinResearch in context
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Ying Yang, Peter Olah, Zoltan Radai, Guilherme Maia, Alexander Salava, Ville Salo, Jonathan Barker, Antti Lauerma, Björn Andersson, Bernhard Homey, Nanna Fyhrquist, and Harri Alenius
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Microbiome ,Transcriptome ,Multi-omics ,Psoriasis ,Skin ,Medicine ,Medicine (General) ,R5-920 - Abstract
Summary: Background: Psoriasis (Pso) is a chronic inflammatory skin disease that poses both physical and psychological challenges. Dysbiosis of the skin microbiome has been implicated in Pso, yet a comprehensive multi-omics analysis of host-microbe interactions is still lacking. To bridge this gap, we conducted an exploratory study by adopting the integrated approach that combines whole metagenomic shotgun sequencing with skin transcriptomics. Methods: This was a cross-sectional study, adult patients with plaque-type Psoriasis (Pso) and healthy volunteers were included. Skin microbiota samples and biopsies were collected from both lesional and non-lesional skin areas on the lower back. Weighted Gene Correlation Network Analysis (WGCNA) was employed for co-expression network analysis, and cell deconvolution was conducted to estimate cell fractions. Taxonomic and functional features of the microbiome were identified using whole metagenomic shotgun sequencing. Association between host genes and microbes was analyzed using Spearman correlation. Findings: Host anti-viral responses and interferon-related networks were identified and correlated with the severity of psoriasis. The skin microbiome showed a greater prevalence of Corynebacterium simulans in the PASI severe-moderate groups, which correlated with interferon-induced host genes. Two distinct psoriatic clusters with varying disease severities were identified. Variations in the expression of cell apoptosis-associated antimicrobial peptides (AMPs) and microbial aerobic respiration I pathway may partly account for these differences in disease severity. Interpretation: Our multi-omics analysis revealed for the first time anti-viral responses and the presence of C. simulans associated with psoriasis severity. It also identified two psoriatic subtypes with distinct AMP and metabolic pathway expression. Our study provides new insights into understanding the host-microbe interaction in psoriasis and lays the groundwork for developing subtype-specific strategies for managing this chronic skin disease. Funding: The research has received funding from the FP7 (MAARS–Grant 261366) and the Innovative Medicines Initiative 2 Joint Undertaking (JU) under grant agreement No 821511 (BIOMAP). The JU receives support from the European Union's Horizon 2020 research and innovation programme and EFPIA. This publication reflects only the author's view and the JU is not responsible for any use that may be made of the information it contains. GAM was supported by a scholarship provided by CAPES-PRINT, financed by the Coordenação de Aperfeiçoamento de Pessoal de Nível Superior - CAPES (Brazilian Government Agency). The authors thank all patients who participated in our study.
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- 2024
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132. Perfluorooctane sulfonate induces ferroptosis-dependent non-alcoholic steatohepatitis via autophagy-MCU-caused mitochondrial calcium overload and MCU-ACSL4 interaction
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Siyu Ren, Jianyu Wang, Zhanchen Dong, Jixun Li, Yu Ma, Ying Yang, Tian Zhou, Tianming Qiu, Liping Jiang, Qiujuan Li, Xiance Sun, and Xiaofeng Yao
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Perfluorooctane sulfonate ,Ferroptosis ,Mitochondrial calcium uniporter ,Autophagy ,Nonalcoholic steatohepatitis ,Environmental pollution ,TD172-193.5 ,Environmental sciences ,GE1-350 - Abstract
The incidence of nonalcoholic steatohepatitis (NASH) is related with perfluorooctane sulfonate (PFOS), yet the mechanism remains ill-defined. Mounting evidence suggests that ferroptosis plays a crucial role in the initiation of NASH. In this study, we used mice and human hepatocytes L-02 to investigate the role of ferroptosis in PFOS-induced NASH and the effect and molecular mechanism of PFOS on liver ferroptosis. We found here that PFOS caused NASH in mice, and lipid accumulation and inflammatory response in the L-02 cells. PFOS induced hepatic ferroptosis in vivo and in vitro, as evidenced by the decrease in glutathione peroxidase 4 (GPX4), and the increases in cytosolic iron, acyl-CoA synthetase long-chain family member 4 (ACSL4) and lipid peroxidation. In the PFOS-treated cells, the increases in the inflammatory factors and lipid contents were reversed by ferroptosis inhibitor. PFOS-induced ferroptosis was relieved by autophagy inhibitor. The expression of mitochondrial calcium uniporter (MCU) was accelerated by PFOS, leading to subsequent mitochondrial calcium accumulation, and inhibiting autophagy reversed the increase in MCU. Inhibiting mitochondrial calcium reversed the variations in GPX4 and cytosolic iron, without influencing the change in ACSL4, induced by PFOS. MCU interacted with ACSL4 and the siRNA against MCU reversed the changes in ACSL4,GPX4 and cytosolic iron systemically. This study put forward the involvement of hepatic ferroptosis in PFOS-induced NASH and identified MCU as the mediator of the autophagy-dependent ferroptosis.
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- 2024
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133. Conformal, stretchable, breathable, wireless epidermal surface electromyography sensor system for hand gesture recognition and rehabilitation of stroke hand function
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Kerong Yang, Senhao Zhang, Ying Yang, Xiaoman Liu, Jiuqiang Li, Benkun Bao, Chang Liu, Hongbo Yang, Kai Guo, and Huanyu Cheng
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Epidermal sEMG sensor system ,Hand gesture recognition ,Rehabilitation of hand function ,Materials of engineering and construction. Mechanics of materials ,TA401-492 - Abstract
Surface electromyography (sEMG) plays a significant role in the everyday practice of clinic hand function rehabilitation. The materials and design of current typical clinic sEMG electrodes are rigid Ag/AgCl or flexible polyimide (PI) film, which cannot provide a stable interface between electrodes and skin for adequate long-term high-quality data. Thus, conformal, soft, breathable, wireless epidermal sEMG sensor systems have broad potential relevance to clinic rehabilitation settings. Herein, we demonstrate a stretchable epidermal sEMG sensor array system with optimized materials and structure strategies for hand gesture recognition and hand function rehabilitation. The optimized serpentine structures with marvelous stretchability and improved fill ratio, provide lower impedance and high-quality sEMG signals. Moreover, the easy-to-use airhole method further ensures stable and long-term contact with the skin for recording. In addition, integrated with a customized flexible wireless data acquisition system, the capability for real-time 8-channel sEMG monitoring is developed, and taking together with the CNN-based algorithm, the system can automatically and reliably realize the 7 kinds of hand gestures with an accuracy of 81.02%. Moreover, the low-cost yet high-performance epidermal sEMG sensor system demonstrated its conceptual feasibility in quantitatively evaluation of stroke patient’s hand and facilitating human-robot collaboration in hand rehabilitation by proof-of-the-concept clinical testing.
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- 2024
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134. Prediction and analysis of components and functions of Ixeris chinensis based on network pharmacology and molecular docking
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Ziwei Ni, Zhe Ma, Xiaoting Qiao, Yaqian Guo, Cailian Ruan, Yayun Wang, and Ying Yang
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Ixeris chinensis ,network pharmacology ,molecular docking ,meta analysis ,drug development ,Medicine (General) ,R5-920 - Abstract
BackgroundIt is reported that the Ixeris chinensis has high medicinal value, but there are few reports about its potential molecular mechanism. We used a network pharmacology approach to predict the active ingredients, targets of action and possible interventions in diseases of Ixeris chinensis.MethodsWe employed various databases and software to predict the active ingredients, target genes, protein interactions, signaling pathways, network diagrams, and molecular docking of Ixeris chinensis. Simultaneously, we searched multiple Chinese and English databases and conducted meta-analyses of five randomized controlled trials.ResultsThe analysis results revealed 12 effective components, including apigenin β-sitosterol, baicalin, baicalein, and luteolin; and selected 40 key targets, including AKT1, TNF, EGFR, ESR1, SRC, among others. GO analysis generated 225 biological processes, 39 cellular components, and 65 molecular functions; KEGG analysis revealed 103 signaling pathways. Molecular docking results indicated that the main active components of Ixeris chinensis can bind well with key targets. Five randomized controlled trials were included. Meta-analysis showed that Ixeris extract can effectively reduce animal blood lipid levels.ConclusionThis study revealed the main active ingredients and key targets of Ixeris chinensis, analyzed the signaling pathways of potential targets, conducted disease prediction, and performed molecular docking prediction, providing a basis for research on the pathways of Ixeris treatment for related diseases and subsequent new drug development.
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- 2024
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135. Case report: The diagnostic pitfall of Warthin-like mucoepidermoid carcinoma
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Ying Yang, Zi Lei, Yixu Lang, Li Wu, Jun Hu, Shiyue Liu, Zaoxiu Hu, and Guoqing Pan
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Warthin-like mucoepidermoid carcinoma ,mucoepidermoid carcinoma ,salivary gland ,Warthin Tumor ,MAML2 ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Warthin-like mucoepidermoid carcinoma (WL-MEC) is a newly reported variant of mucoepidermoid carcinoma. Its histological feature is easy to confused with metaplastic Warthin Tumor, and its relationship with Warthin tumor in histogenesis is controversial. In this study, we presented two cases of WL-MEC, discussing their clinicopathological and molecular features. Notably, one case was initially misdiagnosed during the first onset of the tumor. Case 1 was a 60-year-old female with a mass in the right parotid gland. Case 2 featured a 29-year-old male who developed a lump at the original surgical site 6 months after a “Warthin tumor” resection from the submandibular gland. Histologically, both tumor exhibited a prominent lymphoid stroma and cystic pattern, accompanied by various amounts of epithelial nests composed of squamoid cells, intermediate cells and mucinous cells. The characteristic eosinophilic bilayer epithelium of Warthin tumor was not typically presented in either case. Both cases tested positive for MAML2 gene rearrangement. To contextualize our findings, we conducted a comprehensive review of forty-eight WL-MEC cases documented in the English literature, aiming to synthesizing a reliable differential diagnostic approach. WL-MEC is a rare yet clinically relevant variant, posing a diagnostic pitfall for pathologists. Our study underscores the importance of a meticulous evaluation of both clinical and histological features, coupled with the detection of MAML2 rearrangement, as a credible method for distinguishing WL-MEC from other benign and malignant lesions, particularly metaplastic Warthin tumor.
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- 2024
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136. The impact of Chinese volume-based procurement on pharmaceutical market concentration
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Ying Yang, Yuxin Liu, Zongfu Mao, Jing Mao, and Yalei Jin
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volume-based procurement ,group purchasing ,pharmaceutical industry ,market concentration ,drug market ,Therapeutics. Pharmacology ,RM1-950 - Abstract
ObjectivesOptimizing the pharmaceutical industrial structure is the key mission of China’s healthcare reform. From the industrial structure perspective, this study empirically evaluated the impact of China’s national volume-based procurement (NVBP) policy on market concentration in the hospital-end drug market.MethodsThis study used drug procurement data of China’s public medical institutions which obtained from the national database. A quasi-natural experiment was designed involving eleven pairs of matched treatment-control region combinations, with NVBP policy as the intervention measure. The market was defined by drug name (molecular boundary) and city/province (geographical boundary). Market changes were measured from three dimensions: the number of enterprises and products, market share, and Herfindahl-Hirschman index (HHI). Dual comparison approach and difference-in-difference (DID) method with fixed effect model were applied to quantify policy impacts.ResultsThe number of enterprises and products decreased by 18 and 83 in pilot regions after NVBP policy, far more than the decreases in control regions (6 and 21). The accumulative market share of 15 bid-winning enterprises increased by 53.67% in volume and 18.79% in value, among which the increment of enterprises with low baseline market share was more prominent (66.64% and 36.40%). Among three enterprise types, the market share of generic consistency evaluation (GCE) certificated generics significantly increased, GCE uncertificated generics significantly decreased, and originators slightly decreased. DID models indicated significantly positive impact of NVBP policy on market concentration, with HHI-volume and HHI-value increasing by 49.33% (β = 0.401, p < 0.01) and 21.05% (β = 0.191, p < 0.01).ConclusionThe implementation of NVBP promoted the intensive drug circulation and supply of Chinese public hospitals, intensifying the exit of GCE uncertificated generics from the hospital-end market. NVBP combined with GCE standards significantly improved market concentration, which brought a positive signal of pharmaceutical industrial structure optimization in China. In the future context of normalized and institutionalized NVBP, the balance should be further sought between low drug prices and reliable hospital drug supply, sustainable industry development.
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- 2024
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137. ECG classification efficient modeling with artificial bee colony optimization data augmentation and attention mechanism
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Mingming Zhang, Huiyuan Jin, and Ying Yang
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ecg modeling ,data enhancement ,timegan network ,artificial bee colony optimization ,relative position matrix ,local attention mechanism ,ca-efficientnet ,Biotechnology ,TP248.13-248.65 ,Mathematics ,QA1-939 - Abstract
In addressing the key issues of the data imbalance within ECG signals and modeling optimization, we employed the TimeGAN network and a local attention mechanism based on the artificial bee colony optimization algorithm to enhance the performance and accuracy of ECG modeling. Initially, the TimeGAN network was introduced to rectify data imbalance and create a balanced dataset. Furthermore, the artificial bee colony algorithm autonomously searched hyperparameter configurations by minimizing Wasserstein distance. Control experiments revealed that data augmentation significantly boosted classification accuracy to 99.51%, effectively addressing challenges with unbalanced datasets. Moreover, to overcome bottlenecks in the existing network, the introduction of the Efficient network was adopted to enhance the performance of modeling optimized with attention mechanisms. Experimental results demonstrated that this integrated approach achieved an impressive overall accuracy of 99.70% and an average positive prediction rate of 99.44%, successfully addressing challenges in ECG signal identification, classification, and diagnosis.
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- 2024
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138. Natural compounds and mesenchymal stem cells: implications for inflammatory-impaired tissue regeneration
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Wen Li, Zichao Xiang, Wenjing Yu, Xiaobin Huang, Qian Jiang, Arwa Abumansour, Ying Yang, and Chider Chen
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Mesenchymal stromal progenitor cells (MSCs) ,Nature compound (NC) ,Immunomodulation ,Tissue regeneration ,Inflammation ,Medicine (General) ,R5-920 ,Biochemistry ,QD415-436 - Abstract
Abstract Inflammation is a common and important pathological process occurring in any part of the body and relating to a variety of diseases. Effective tissue repair is critical for the survival of impaired organisms. Considering the side effects of the currently used anti-inflammatory medications, new therapeutic agents are urgently needed for the improvement of regenerative capacities of inflammatory-impaired tissues. Mesenchymal stromal stem/progenitor cells (MSCs) are characterized by the capabilities of self-renewal and multipotent differentiation and exhibit immunomodulatory capacity. Due to the ability to modulate inflammatory phenotypes and immune responses, MSCs have been considered as a potential alternative therapy for autoimmune and inflammatory diseases. Natural compounds (NCs) are complex small multiple-target molecules mostly derived from plants and microorganisms, exhibiting therapeutic effects in many disorders, such as osteoporosis, diabetes, cancer, and inflammatory/autoimmune diseases. Recently, increasing studies focused on the prominent effects of NCs on MSCs, including the regulation of cell survival and inflammatory response, as well as osteogenic/adipogenic differentiation capacities, which indicate the roles of NCs on MSC-based cytotherapy in several inflammatory diseases. Their therapeutic effects and fewer side effects in numerous physiological processes, compared to chemosynthetic drugs, made them to be a new therapeutic avenue combined with MSCs for impaired tissue regeneration. Here we summarize the current understanding of the influence of NCs on MSCs and related downstream signaling pathways, specifically in pathological inflammatory conditions. In addition, the emerging concepts through the combination of NCs and MSCs to expand the therapeutic perspectives are highlighted. A promising MSC source from oral/dental tissues is also discussed, with a remarkable potential for MSC-based therapy in future clinical applications.
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- 2024
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139. The direct binding of bioactive peptide Andersonin-W1 to TLR4 expedites the healing of diabetic skin wounds
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Chao Li, Yuxin Xiong, Zhe Fu, Yuxin Ji, Jiayi Yan, Yan Kong, Ying Peng, Zeqiong Ru, Yubing Huang, Yilin Li, Ying Yang, Li He, Jing Tang, Ying Wang, and Xinwang Yang
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Diabetic skin wound healing ,TLR4/NF-κB ,Inflammation ,Angiogenesis ,Cytology ,QH573-671 - Abstract
Abstract Background Chronic nonhealing wounds remain a considerable challenge in clinical treatment due to excessive inflammation and impeded reepithelialization and angiogenesis. Therefore, the discovery of novel prohealing agents for chronic skin wounds are urgent and important. Amphibian-derived prohealing peptides, especially immunomodulatory peptides, provide a promising strategy for the treatment of chronic skin trauma. However, the mechanism of immunomodulatory peptides accelerating the skin wound healing remains poorly understood. Methods The prohealing ability of peptide Andersonin-W1 (AW1) was assessed by cell scratch, cell proliferation, transwell, and tube formation. Next, full-thickness, deep second-degree burns and diabetic full-thickness skin wounds in mice were performed to detect the therapeutic effects of AW1. Moreover, the tissue regeneration and expression of inflammatory cytokines were evaluated by hematoxylin and eosin (H&E), enzyme-linked immunosorbent assay (ELISA), and immunohistochemistry staining. Molecular docking, colocalization, and western blotting were used to explore the mechanism of AW1 in promoting wound healing. Results We provide solid evidence to display excellent prohealing effects of AW1, identified as a short antimicrobial peptide in our previous report. At relative low concentration of nM, AW1 promoted the proliferation, migration, and scratch repair of keratinocyte, macrophage proliferation, and tube formation of HUVEC. AW1 also facilitated reepithelialization, granulation regeneration, and angiogenesis, thus significantly boosting the healing of full-thickness, deep second-degree burns and diabetic skin wounds in mice. Mechanistically, in macrophages, AW1 directly bound to Toll-like receptor 4 (TLR4) in the extracellular region and regulated the downstream nuclear factor‐κB (NF-κB) signaling pathway to facilitate the inflammatory factor secretion and suppress excessive inflammation induced by lipopolysaccharide (LPS). Moreover, AW1 regulated macrophage polarization to promote the transition from the inflammatory to the proliferative phase and then facilitated reepithelialization, granulation regeneration, and angiogenesis, thus exhibiting excellent therapeutic effects on diabetic skin wounds. Conclusions AW1 modulates inflammation and the wound healing process by the TLR4/NF-κB molecular axis, thus facilitating reepithelialization, granulation regeneration, and angiogenesis. These findings not only provided a promising multifunctional prohealing drug candidate for chronic nonhealing skin wounds but also highlighted the unique roles of “small” peptides in the elucidation of “big” human disease mechanisms. Graphical Abstract
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- 2024
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140. Haplotype-resolved genome assembly provides insights into evolutionary history of the Actinidia arguta tetraploid
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Feng Zhang, Yingzhen Wang, Yunzhi Lin, Hongtao Wang, Ying Wu, Wangmei Ren, Lihuan Wang, Ying Yang, Pengpeng Zheng, Songhu Wang, Junyang Yue, and Yongsheng Liu
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Actinidia arguta ,Genomics ,Polyploid ,Haplotype ,Stress tolerance ,Plant culture ,SB1-1110 ,Botany ,QK1-989 - Abstract
Abstract Actinidia arguta, known as hardy kiwifruit, is a widely cultivated species with distinct botanical characteristics such as small and smooth-fruited, rich in beneficial nutrients, rapid softening and tolerant to extremely low temperatures. It contains the most diverse ploidy types, including diploid, tetraploid, hexaploid, octoploid, and decaploid. Here we report a haplotype-resolved tetraploid genome (A. arguta cv. ‘Longcheng No.2’) containing four haplotypes, each with 40,859, 41,377, 39,833 and 39,222 protein-coding genes. We described the phased genome structure, synteny, and evolutionary analyses to identify and date possible WGD events. K s calculations for both allelic and paralogous genes pairs throughout the assembled haplotypic individuals showed its tetraploidization is estimated to have formed ~ 1.03 Mya following Ad-α event occurred ~ 18.7 Mya. Detailed annotations of NBS-LRRs or CBFs highlight the importance of genetic variations coming about after polyploidization in underpinning ability of immune responses or environmental adaptability. WGCNA analysis of postharvest quality indicators in combination with transcriptome revealed several transcription factors were involved in regulating ripening kiwi berry texture. Taking together, the assembly of an A. arguta tetraploid genome provides valuable resources in deciphering complex genome structure and facilitating functional genomics studies and genetic improvement for kiwifruit and other crops. Graphical Abstract
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- 2024
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141. MiR‐488‐3p facilitates wound healing through CYP1B1‐mediated Wnt/β‐catenin signaling pathway by targeting MeCP2
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Chenchen Zuo, Pengju Fan, Ying Yang, and Chengjun Hu
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CYP1B1 ,miR‐488‐3p ,Wound healing ,Diseases of the endocrine glands. Clinical endocrinology ,RC648-665 - Abstract
ABSTRACT Introduction Diabetic wounds are difficult to heal, but the pathogenesis is unknown. MicroRNAs (miRNAs) are thought to play important roles in wound healing. The effect of miR‐488‐3p in wound healing was studied in this article. Materials and Methods The gene methylation was measured by methylation specific PCR (MSP) assay. A dual‐luciferase reporter assay was adopted to analyze the interaction between miR‐488‐3p and MeCP2. Results Cytochrome P450 1B1 (CYP1B1) is a monooxygenase belonging to the cytochrome P450 family that aids in wound healing. Our findings showed that the miR‐488‐3p and CYP1B1 expression levels were much lower in wound tissues of diabetics with skin defects, but the methyl‐CpG‐binding protein 2 (MeCP2) level was significantly higher than that in control skin tissues. MiR‐488‐3p overexpression increased cell proliferation and migration, as well as HUVEC angiogenesis, while inhibiting apoptosis, according to function experiments. In vitro, MeCP2 inhibited wound healing by acting as a target of miR‐488‐3p. We later discovered that MeCP2 inhibited CYP1B1 expression by enhancing its methylation state. In addition, CYP1B1 knockdown inhibited wound healing. Furthermore, MeCP2 overexpression abolished the promoting effect of miR‐488‐3p on wound healing. It also turned out that CYP1B1 promoted wound healing by activating the Wnt4/β‐catenin pathway. Animal experiments also showed that miR‐488‐3p overexpression could accelerate wound healing in diabetic male SD rats. Conclusions MiR‐488‐3p is a potential therapeutic target for diabetic wound healing since it improved wound healing by activating the CYP1B1‐mediated Wnt4/‐catenin signaling cascade via MeCP2.
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- 2024
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142. Exploration and application of autonomous network based on network events
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Weihong LI, Ying YANG, Kun HUANG, Chenglong ZHU, Tantao PAN, and Xianzong HE
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network event ,autonomous network ,self-identification ,self-positioning ,self-scheduling ,intelligent quality inspection ,Telecommunication ,TK5101-6720 ,Technology - Abstract
In order to achieve the goal of autonomous networks and improve the automation of network operation, an autonomous network model was explored.The model introduced algorithms such as multidimensional data automatic clustering, adaptive sliding time window mechanism, user traffic loss assessment model based on spatiotemporal sequence correlation, fault propagation graph based on graph theory and spatiotemporal clustering, and builded automation capabilities through network event management, fault self-identification, self-positioning, self-scheduling, and intelligent quality inspection.The goal is achieving L4 advanced intelligent network by 2025.
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- 2024
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143. Integrated multi-omic analysis and experiment reveals the role of endoplasmic reticulum stress in lung adenocarcinoma
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Ying Liu, Wei Lin, Hongyan Qian, Ying Yang, Xuan Zhou, Chen Wu, Xiaoxia Pan, Yuan Liu, and Gaoren Wang
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Lung adenocarcinoma ,Endoplasmic reticulum ,Prognosis ,Therapy ,Immune infiltration ,Internal medicine ,RC31-1245 ,Genetics ,QH426-470 - Abstract
Abstract Background Lung cancer is a highly prevalent malignancy worldwide and is associated with high mortality rates. While the involvement of endoplasmic reticulum (ER) stress in the development of lung adenocarcinoma (LUAD) has been established, the underlying mechanism remains unclear. Methods In this study, we utilized data from The Cancer Genome Atlas (TCGA) to identify differentially expressed endoplasmic reticulum stress-related genes (ERSRGs) between LUAD and normal tissues. We performed various bioinformatics analyses to investigate the biological functions of these ERSRGs. Using LASSO analysis and multivariate stepwise regression, we constructed a novel prognostic model based on the ERSRGs. We further validated the performance of the model using two independent datasets from the Gene Expression Omnibus (GEO). Additionally, we conducted functional enrichment analysis, immune checkpoint analysis, and immune infiltration analysis and drug sensitivity analysis of LUAD patients to explore the potential biological function of the model. Furthermore, we conducted a battery of experiments to verify the expression of ERSRGs in a real-world cohort. Results We identified 106 ERSRGs associated with LUAD, which allowed us to classify LUAD patients into two subtypes based on gene expression differences. Using six prognostic genes (NUPR1, RHBDD2, VCP, BAK1, EIF2AK3, MBTPS2), we constructed a prognostic model that exhibited excellent predictive performance in the training dataset and was successfully validated in two independent external datasets. The risk score derived from this model emerged as an independent prognostic factor for LUAD. Confirmation of the linkage between this risk model and immune infiltration was affirmed through the utilization of Gene Set Enrichment Analysis (GSEA), Gene Ontology (GO), and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analyses. The q-PCR results verified significant differences in the expression of prognostic genes between cancer and paracancer tissues. Notably, the protein expression of NUPR1, as determined by immunohistochemistry (IHC), exhibited an opposite pattern compared to the mRNA expression patterns. Conclusion This study establishes a novel prognostic model for LUAD based on six ER stress-related genes, facilitating the prediction of LUAD prognosis. Additionally, NUPR1 was identified as a potential regulator of stress in LUAD.
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- 2024
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144. Mode-Voltage Constrained Control for Adaptive Optics System
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Ruitao Wang, Youming Guo, Nanfei Yan, Ying Yang, Lanqiang Zhang, Qiong Tu, Lingxiao Li, and Changhui Rao
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Deformable mirror ,decoupling control algorithm ,adaptive optics system ,Applied optics. Photonics ,TA1501-1820 ,Optics. Light ,QC350-467 - Abstract
In the adaptive optics system of astronomical observation, the deformable mirror and the tip/tilt mirror are coupled during the correction process. However, due to the limited sensitivity of the Shack-Hartmann wavefront sensor in detecting piston aberration, it becomes necessary to constrain piston aberration caused by the deformable mirror. This paper introduces a straightforward and efficient decoupling control algorithm that is based on mode-voltage constraints. The proposed algorithm utilizes the mode method to decompose the control voltage mode, constructs a transition matrix to avoid piston and tip/tilt aberrations, and combines this matrix with the response matrix of the deformable mirror to generate a new reconstruction matrix. The direct slope algorithm is used to obtain the mode coefficient of the control voltage, which is then followed by obtaining the constrained control voltage through the proportional-integral controller and transition matrix. Simulation results demonstrate that this algorithm outperforms both the traditional vector project-constraint algorithm and the projection-based decoupling algorithm. The experimental results demonstrate the effective suppression of coupling between the deformable mirror and tip/tilt mirror by this algorithm, leading to a higher Strehl Ratio and improved correction for first 44-order Zernike mode aberrations.
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- 2024
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145. Simultaneous measurements on cosmic curvature and opacity using latest HII regions and H(z) observations
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Ying Yang, Tonghua Liu, Jiayuan Huang, Xiaolan Cheng, Marek Biesiada, and Shu-min Wu
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Astrophysics ,QB460-466 ,Nuclear and particle physics. Atomic energy. Radioactivity ,QC770-798 - Abstract
Abstract The different spatial curvatures of the universe affect the measurement of cosmological distances, which may also contribute to explaining the observed dimming of type Ia supernovae. This phenomenon may be caused by the opacity of the universe. Similarly, the opacity of the universe can lead to a bias in our measurements of curvature. Thus, it is necessary to measure cosmic curvature and opacity simultaneously. In this paper, we propose a new model-independent method to simultaneously measure the cosmic curvature and opacity by using the latest observations of HII galaxies acting as standard candles and the latest Hubble parameter observations. The machine learning method-Artificial Neural Network is adopted to reconstruct observed Hubble parameter H(z) observations. Our results support a slightly opaque and flat universe at $$1\sigma $$ 1 σ confidence level by using previous 156 HII regions sample. However, the negative curvature is obtained by using the latest 181 HII regions sample in the redshift range $$z\sim 2.5$$ z ∼ 2.5 . More importantly, we obtain the simultaneous measurements with precision on the cosmic opacity $$\mathrm \Delta \tau \sim 10^{-2}$$ Δ τ ∼ 10 - 2 and curvature $$\mathrm \Delta \Omega _K\sim 10^{-1}$$ Δ Ω K ∼ 10 - 1 . A strong degeneracy between the cosmic opacity and curvature parameters is also revealed in this analysis.
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- 2024
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146. Development and validation of a prognostic nomogram for predicting in-hospital mortality of patients with acute paraquat poisoning
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Guo Tang, Zhen Jiang, Lingjie Xu, Ying Yang, Sha Yang, and Rong Yao
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Medicine ,Science - Abstract
Abstract This study aimed to develop and validate a predictive model to determine the risk of in-hospital mortality in patients with acute paraquat poisoning. This retrospective observational cohort study included 724 patients with acute paraquat poisoning whose clinical data were collected within 24 h of admission. The primary outcome was in-hospital mortality. Patients were randomly divided into training and validation cohorts (7/3 ratio). In the training cohort, the least absolute shrinkage and selection operator regression models were used for data dimension reduction and feature selection. Multivariate logistic regression was used to generate a predictive nomogram for in-hospital mortality. The prediction model was assessed for both the training and validation cohorts. In the training cohort, decreased level of consciousness (Glasgow Coma Scale score
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- 2024
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147. Untargeted metabolomics of the intestinal tract of DEV-infected ducks
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Haiqing Cai, Xia Yang, Yunyun Yang, Yi Feng, Anlin Wen, Ying Yang, Ming Wen, and Deyuan Ou
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Duck enteritis virus ,Duck ,Gut ,Differentially abundant metabolites ,Nontargeted metabolomics ,Infectious and parasitic diseases ,RC109-216 - Abstract
Abstract Introduction Duck enteritis virus (DEV) mainly causes infectious diseases characterized by intestinal haemorrhage, inflammation and parenchymal organ degeneration in ducks and other poultry. However, the mechanism by which it causes intestinal damage in ducks is not well understood. Metabolomics can provide an in-depth understanding of the full complexity of the disease. Methods In this study, 24 clinically healthy green-shell ducks (weight 1.5 kg ± 20 g) were randomly divided into 2 groups (experimental group, 18; control group, 6). The experimental group was intramuscularly injected with 0.2 mL of DEV virus in solution (TCID50 3.16 × 108 PFU/mL), and the control group was injected with 0.2 mL of sterile normal saline. Duck duodenum and ileum tissue samples were collected at 66 h, 90 h and 114 h post-injection (12 h of fasting before killing), and metabolomics analysis of duck duodenum and ileum tissues at the three time points (66, 90, 114 h) was performed by liquid chromatography–mass spectrometry (LC–MS) to screen for and analyse the potential differentiated metabolites and related signalling pathways. Results Screening was performed in the positive/negative mode (Pos: Positive ion mode; the ionization of substances at the ion source with positive ions such as H+, NH4 +, Na+ and K+; Neg: Negative ion mode; the ionization of substances at the ion source with negative ions such as Cl−, OAc−), and compound abundance was compared to that in the control group. The total number of differentially abundant compounds in the duodenum at 66 h, 90 h and 114 h of DEV infection gradually increased, and metabolites such as cytidine, 2′-deoxyriboside and 4-guanidinobutyric acid were differentially abundant metabolites common to all three time periods. The metabolic pathways related to inflammatory response and immune response were tryptophan acid metabolism, cysteine-methionine metabolism, histidine metabolism and other amino acid metabolism and fat metabolism. Among them, the metabolic pathways with more differentially abundant metabolites were amino acid biosynthesis, cysteine and methionine metabolism, tryptophan metabolism, unsaturated fatty acid biosynthesis and purine metabolism, and the metabolic pathways with more enrichment factors were the IgA-related intestinal immune network pathway and lysosome pathway. Compared with the control group, there were 16 differentially abundant metabolites in the ileum tissue of DEV-infected ducks at 66 h of infection, 52 at 90 h of infection, and 40 at 14 h of infection with TD114. The metabolic pathways with more enriched differentially abundant metabolites were pyrimidine metabolism, tyrosine metabolism, phenylalanine metabolism and tryptophan biosynthesis. The metabolic pathways with the most enrichment factors were the mTOR signalling pathway, ferroptosis pathway, tryptophan metabolism pathway and caffeine metabolism pathway. Conclusion Comparative analysis showed that the number of differentially abundant metabolites in the duodenum and ileum differed to some extent after DEV infection, with significantly more differentially abundant metabolites in duodenal tissues and fewer in ileal tissues; after DEV infection, the highest number of differentially abundant metabolites was obtained at 114 h of DEV infection, followed by the second highest at 90 h of infection and the lowest at 66 h of infection. The common differentially abundant metabolites in duodenal and ileal tissues were prostaglandins, arachidonic acid, and arachidonic ethanolamine. The main metabolic pathways in the duodenum were the IgA-associated intestinal immune network pathway and the lysosomal pathway, and the metabolic pathways with more enriched factors in the ileum were the mTOR signalling pathway, the ferroptosis pathway, and the tryptophan metabolism pathway.
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- 2023
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148. Optimal cut-offs of depression screening tools during the COVID-19 pandemic: a systematic review
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Jieru Zhou, Maja R. Radojčić, Claire E. Ashton-James, Hanqiao Yang, Ziyi Chen, Ruijia Wang, Ying Yang, Jinhua Si, Liang Yao, Ge Li, and Lingxiao Chen
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Depression ,Optimal cut-off ,Covid-19 ,Systematic review ,Psychiatry ,RC435-571 - Abstract
Abstract Background Studies have reported an increase in the prevalence of depression during the COVID-19 pandemic. The accuracy of screening tools may change with the prevalence and distribution of a disease in a population or sample: the “Spectrum Effect”. Methods First, we selected commonly used screening tools and developed search strategies for the inclusion of original studies during the pandemic. Second, we searched PsycINFO, EMBASE, and MEDLINE from March 2020 to September 2022 to obtain original studies that investigated the accuracy of depression screening tools during the pandemic. We then searched these databases to identify meta-analyses summarizing the accuracy of these tools conducted before the pandemic and compared the optimal cut-offs for depression screening tools during the pandemic with those before. Result Four original studies evaluating the optimal cut-offs for four screening tools (Beck Depression Inventory [BDI-II], Hospital Anxiety and Depression Scale-Depression [HADS-D], Patient Health Questionnaire-9 [PHQ-9], and Geriatric Depression Scale-4 [GDS-4]) were published during the pandemic. Four meta-analyses summarizing these tools before the pandemic. We found that the optimal cut-off of BDI-II was 14 during the pandemic (23.8% depression prevalence, screening patients with Type 2 diabetes) and 14.5 before the pandemic (17.6% depression prevalence, screening psychiatric, primary care, and healthy populations); HADS-D was 10 during the pandemic (23.8% depression prevalence, screening patients with type 2 diabetes) and 7 before the pandemic (15.0% depression prevalence, screening medically ill patients); PHQ-9 was 11 during the pandemic (14.5% depression prevalence, screening university students) and 8 before the pandemic (10.9% depression prevalence, screening the unrestricted population), and GDS-4 was 1.8 during the pandemic (29.0% depression prevalence, screening adults seen in a memory clinic setting) and 3 before the pandemic (18.5% depression prevalence, screening older adults). Conclusion The optimal cut-off for different screening tools may be sensitive to changes in study populations and reference standards. And potential spectrum effects that should be considered in post-COVID time which aiming to improve diagnostic accuracy.
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- 2023
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149. Improving bridge effect to overcome interspecific hybrid sterility by pyramiding hybrid sterile loci from Oryza glaberrima
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Jing Li, Jiawu Zhou, Peng Xu, Ying Yang, Xianneng Deng, Wei Deng, Yu Zhang, Yonggang Lv, Qiuhong Pu, and Dayun Tao
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Medicine ,Science - Abstract
Abstract In order to evaluate the genetic effect caused by hybrid sterile loci, NILs with O. glaberrima fragment at six hybrid sterile loci under O. sativa genetic background (single-locus-NILs) were developed; two lines harboring two hybrid sterile loci, one line harboring three hybrid sterile loci were further developed. A total of nine NILs were used to test cross with O. sativa recurrent parent, and O. glaberrima accessions respectively. The results showed that the sterility of pollen grains in F1 hybrids deepened with the increase of the number of hybrid sterile loci, when the nine lines test crossed with O. sativa recurrent parent. The F1 hybrids were almost completely sterile when three hybrid sterile loci were heterozygeous. On the other hand, the single-locus-NILs had limited bridge effect on improving pollen grain fertility of interspecific hybrids. Compared single-locus-NILs, the multiple-loci-NILs showed increasing effect on pollen fertility when test crossing with O. glaberrima accessions. Further backcrossing can improve the fertility of pollen grain and spikelet of interspecific hybrids. The optimal solution to improve the fertility of interspecific hybrid can be utilization of pyramiding bridge parent plus backcrossing. This report has potential for understanding the nature of interspecific hybrid sterility, and overcoming the interspecific hybrid F1 pollen grain sterility between O. sativa and O. glaberrima.
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- 2023
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150. Structural transition of parenthood among Chinese nulliparous couples with planned pregnancies, 2013–2019
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Long Wang, Chunying Han, Xinyi Lv, Shuai Zeng, Rongwei Mu, Yuzhi Deng, Wenlu Xie, Jiaxin Huang, Siyu Wu, Ya Zhang, Hongguang Zhang, Yuan He, Zuoqi Peng, Yuanyuan Wang, Haiping Shen, Qiaomei Wang, Yiping Zhang, Donghai Yan, Ying Yang, and Xu Ma
- Subjects
Parenthood postponement ,Within-population heterogeneity ,China ,Public aspects of medicine ,RA1-1270 - Abstract
Abstract Background The postponement of parenthood is a global public health issue that has received attention of many public health experts. However, few studies have investigated the postponement in marriage age, marriage and conception interval, and pregnancy age in terms of demographic and regional heterogenicities. Methods This is a cross-sectional, registry-based study, and a total of 13 894 601 nulliparous couples who participated in the National Free Pre-Pregnancy Check-ups Project and became pregnant during 2013–2019 were included. We calculated annual percentage change and forest plots for marriage age, marriage and conception interval, and pregnancy age. Results Late marriage (marriage age ≥ 35 years), long marriage and conception interval (marriage and conception interval ≥ 2 years), and advanced pregnancy (pregnancy age ≥ 35 years) increased from 1.20%, 22.01%, and 1.88% in 2013 to 1.69%, 32.75%, and 2.79% in 2019, respectively. The corresponding annual percentage changes were 6.55%, 8.44%, and 8.17%. Participants without higher education had a higher annual percentage change, but comparable prevalence for long marriage and conception interval with participants with higher education. Participants residing in second- or new first-tier cities, and the northeast of China who had a higher prevalence of parenthood postponement also had higher corresponding annual percentage changes. Conclusions Structural postponement of parenthood with demographic and regional heterogenicities was observed among Chinese nulliparous couples with planned pregnancies during 2013–2019. Inclusive and comprehensive parenting support should be developed and implemented in mainland China to minimize the negative health effects arising from the postponement, especially for couples without higher education and living in new first/second-tier cities or the northeast China.
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- 2023
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