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The current study focuses on the interaction between hierarchical structures of nanoparticles (NPs) and a semiconductor substrate on which they are assembled. Monolayer and bilayer assemblies of two different NPs were prepared on the surface of a GaAs substrate. The photoluminescence response of the bilayer assemblies depends on their hierarchy, namely on the ordering of differently sized nanoparticles with respect to the surface; however, the surface photovoltage does not. Based on these studies, it is possible to determine the importance of each of the possible quenching mechanisms for electron-hole pair excitation.

Self-assembled monolayers of single-stranded (ss) peptide nucleic acids (PNAs) containing seven nucleotides (TTTXTTT), a C-terminus cysteine, and an N-terminus ferrocene redox group were formed on gold electrodes. The PNA monomer group (X) was selected to be either cytosine (C), thymine (T), adenine (A), guanine (G), or a methyl group (Bk). The charge transfer rate through the oligonucleotides was found to correlate with the oxidation potential of X. Kinetic measurements and computational studies of the ss-PNA fragments show that a nucleobase mediated charge transport mechanism in the deep tunneling superexchange regime can explain the observed dependence of the kinetics of charge transfer on the PNA sequence. Theoretical analysis suggests that the charge transport is dominantly hole-mediated and takes place through the filled bridge orbitals. The strongest contribution to conductance comes from the highest filled orbitals (HOMO, HOMO-1, and HOMO-2) of individual bases, with a rapid drop off in contributions from lower lying filled orbitals. Our studies further suggest that the linear correlation observed between the experimental charge transfer rates and the oxidation potential of base X arises from weak average interbase couplings and similar stacking geometries for the four TTTXTTT systems.

This work compares the photoinduced unimolecular electron transfer rate constants for two different solute molecules (D-SSS-A and D-SRR-A) in water and DMSO solvents. The D-SSS-A solute has a cleft between the electron donor and acceptor units, which is able to contain a water molecule but is too small for DMSO. The rate constant for D-SSS-A in water is significantly higher than that for D-SRR-A, which lacks a cleft, and significantly higher for either solute in DMSO. The enhancement of the rate constant is explained by an electron tunneling pathway that involves water molecule(s).

This study explores how the electron transfer in a class of donor-bridge-acceptor (DBA) supermolecules is affected by the dynamical response of the solvent. These DBA molecules have a pendant group juxtaposed between the donor and acceptor groups (Figure 1). The pendant provides intermediate electronic coupling strengths of a few hundred wavenumbers by way of its nonbonded contacts with the donor and acceptor and it can be tuned by substituents added to the pendant. This design allows the measurement of electron transfer rates from a regime in which the mechanism is nonadiabatic to a regime in which the solvent friction modifies the rate substantially. The rate constants and mechanistic parameters are compared with the expectations of models for solvent dynamical effects on the reaction rate.

Electron transmission through chiral molecules induced by circularly polarized light can be very different for mirror-image structures, a peculiar fact given that the electronic energy spectra of the systems are identical. We propose that this asymmetry--as large as 10% for resonant transport--arises from different dynamical responses of the mirrored structures to coherent excitation. This behavior is described in the context of a general novel phenomenon of current transfer (transfer of charge with its momentum information) and accounts for the observed asymmetry and its dependence on structure.

The involvement of protons in the heterogeneous electron transfer between cytochrome c and a gold electrode to which it is attached was studied by comparing the electron transfer rate constants for H2O and D2O solutions. Rate constants were measured as a function of the electrochemical cell solution and the protein incubant solution, i.e., k (0)(incubant, cell). Two separate isotope effects exist: a cell "isotope effect", KIE cell = k (0)(H2O, H2O): k (0)(H2O, D2O), which is manifest at short time scales (<30 s) and arises from the viscosity difference between H2O and D2O, and an incubant isotope effect, KIE inc= k (0)(H2O, H2O): k (0)(D2O, H2O), which is manifest at longer times (>2 h) and results from H/D exchange. The two isotope effects are approximately equal ( approximately 1.2) and a total isotope effect KIE total = k (0)(H2O, H2O): k (0)(D2O, D2O) can be constructed that is the product of KIE cell and KIE inc. The nature of the electron transfer process, possible coupling to a proton transfer process, and the involvement of specific hydrogens in the transfer mechanism are discussed.

Poly(phenyleneethynylene)-based conjugated polyelectrolytes (PPE-SO(3)(-)) are a class of polyions with rigid backbones. This work uses fluorescence correlation spectroscopy to study how the diffusion of complexes, formed between a PPE-SO(3)(-) polyelectrolyte and octadecyltrimethylammonium bromide (OTAB) surfactant molecules, changes with OTAB concentration below its critical micelle concentration. The dependence of the hydrodynamic radius of the complexes on the OTAB concentration has three regimes. In the low concentration regime ( C(OTAB)/ C(monomer) < 6), the complex has a size comparable to that of the polymer in deionized water. In the intermediate concentration regime (6 < C(OTAB)/ C(monomer) < 400), the complexes have the largest size and substantial heterogeneity. In the high concentration regime (400 < C(OTAB)/ C(monomer) < 1800), the complexes have a size that is about three times larger than that in the low concentration regime. These results elucidate features of the self-assembly of a polyelectrolyte and an ionic surfactant and show that the C(OTAB)/ C(monomer) concentration ratio controls the composition of polyelectrolyte/surfactant complexes.

The infrared photoresponse in the electrical conductivity of single-walled carbon nanotubes (SWNTs) is dramatically enhanced by embedding SWNTs in an electrically and thermally insulating polymer matrix. The conductivity change in a 5 wt % SWNT-polycarbonate nanocomposite is significant (4.26%) and sharp upon infrared illumination in the air at room temperature. While the thermal effect predominates in the infrared photoresponse of a pure SWNT film, the photoeffect predominates in the infrared photoresponse of SWNT-polycarbonate nanocomposites.

This work shows that low charge density poly(p-phenylene-ethynylene)s (PPE-SO3Na-L and PPE-CO2Na-L), which feature sulfonate and carboxylate groups on every other phenyl ring, form aggregates in water, whereas high charge density poly(p-phenylene-ethynylene)s (PPE-SO3Na-H and PPE-CO2Na-H), which possess sulfonate or carboxylate groups on every phenyl ring, do not aggregate in water. The formation of aggregates of PPE-SO3Na-L and PPE-CO2Na-L is demonstrated by comparing the concentration and temperature dependence of their steady-state spectra in water to that in DMSO, in which the two polymers do not aggregate. For the weak polyelectrolytes PPE-CO2Na-H and PPE-CO2Na-L, the solution pH was changed to vary the charge density. In addition, the cationic surfactant, octadecyltrimethyl ammonium, is shown to dissociate the low charge density polymer aggregates and to form supramolecular complexes with each of the different polyelectrolytes. Fluorescence correlation spectroscopy was applied to provide insight into the sizes of aggregates under different solution conditions.

This study investigates the fluorescence quenching of a poly(p-phenyleneethynylene) (1) based polyelectrolyte by positively charged and neutral macromolecules. This work shows that the change in the fluorescence yield of 1 depends on a number of factors, including electrostatic, hydrophobic, and energy transfer interactions with the quencher and also changes in the solution conditions such as concentration and ionic strength. The fluorescence quenching is attributed to the formation of aggregates that form upon addition of different quenchers to a solution of 1 and/or the solution conditions. The extent of 1's aggregation is shown to depend on the type of interaction between the polymer and the quencher, the concentration of the polymer, and the ionic strength of the solution.

We report on the effects of self-assembled monolayer (SAM) dilution and thickness on the electron transfer (ET) event for cytochrome c (CytC) electrostatically immobilized on carboxyl terminated groups. We observed biphasic kinetic behavior for a logarithmic dependence of the rate constant on the SAM carbon number (ET distance) within the series of mixed SAMs of C(5)COOH/C(2)OH, C(10)COOH/C(6)OH, and C(15)COOH/C(11)OH that is in overall similar to that found earlier for the undiluted SAM assemblies. However, in the case of C(15)COOH/C(11)OH and C(10)COOH/C(6)OH mixed SAMs a notable increase of the ET standard rate constant was observed, in comparison with the corresponding unicomponent (omega-COOH) SAMs. In the case of the C(5)COOH/C(2)OH composite SAM a decrease of the rate constant versus the unicomponent analogue was observed. The value of the reorganization free energy deduced through the Marcus-like data analysis did not change throughout the series; this fact along with the other observations indicates uncomplicated rate-determining unimolecular ET in all cases. Our results are consistent with a model that considers a changeover between the alternate, tunneling and adiabatic intrinsic ET mechanisms. The physical mechanism behind the observed fine kinetic effects in terms of the protein-rigidifying omega-COOH/CytC interactions arising in the case of mixed SAMs are also discussed., (2007 Wiley Periodicals, Inc)

The absorption and fluorescence properties of a polyphenylethynylene based conjugated polyelectrolyte with sulfonate solubilizing groups (PP2) are shown to change dramatically with solution conditions because of the equilibrium between unaggregated and aggregated forms of the polymer. The fluorescence of PP2 is strongly quenched on addition of counterions such as Na+, K+, Li+, and TBA+, an effect which arises from the creation of salt stabilized aggregates. The formation of aggregates has been further corroborated by concentration and temperature studies in water and comparisons to dimethylsulfoxide solvent, in which the polymer does not aggregate. In aqueous solutions, the addition of the cationic surfactant, octadecyltrimethyl ammonium, causes the polymer aggregates to dissociate and creates polymer/surfactant aggregates that have spectral properties like that of the unaggregated polymer.

This work explores electron transfer through nonbonded contacts in two U-shaped DBA molecules 1DBA and 2DBA by measuring electron-transfer rates in organic solvents of different polarities. These molecules have identical U-shaped norbornylogous frameworks, 12 bonds in length and with diphenyldimethoxynaphthalene (DPMN) donor and dicyanovinyl (DCV) acceptor groups fused at the ends. The U-shaped cavity of each molecule contains an aromatic pendant group of different electronic character, namely p-ethylphenyl, in 1DBA, and p-methoxyphenyl, in 2DBA. Electronic coupling matrix elements, Gibbs free energy, and reorganization energy were calculated from experimental photophysical data for these compounds, and the experimental results were compared with computational values. The magnitude of the electronic coupling for photoinduced charge separation, /V(CS)/, in 1DBA and 2DBA were found to be 147 and 274 cm(-1), respectively, and suggests that the origin of this difference lies in the electronic nature of the pendant aromatic group and charge separation occurs by tunneling through the pendant group, rather than through the bridge. 2DBA, but not 1DBA, displayed charge transfer (CT) fluorescence in nonpolar and weakly polar solvents, and this observation enabled the electronic coupling for charge recombination, /V(CR)/, in 2DBA to be made, the magnitude of which is approximately 500 cm(-1), significantly larger than that for charge separation. This difference is explained by changes in the geometry of the molecule in the relevant states; because of electrostatic effects, the donor and acceptor chromophores are about 1 A closer to the pendant group in the charge-separated state than in the locally excited state. Consequently the through-pendant-group electronic coupling is stronger in the charge-separated state--which controls the CT fluorescence process--than in the locally excited state--which controls the charge separation process. The magnitude of /V(CR)/ for 2DBA is almost 2 orders of magnitude greater than that in DMN-12-DCV, having the same length bridge as for the former molecule, but lacking a pendant group. This result unequivocally demonstrates the operation of the through-pendant-group mechanism of electron transfer in the pendant-containing U-shaped systems of the type 1DBA and 2DBA.

Upon interaction with anionic phospholipids, particularly mitochondria-specific cardiolipin (CL), cytochrome c (cyt c) loses its tertiary structure and its peroxidase activity dramatically increases. CL-induced peroxidase activity of cyt c has been found to be important for selective CL oxidation in cells undergoing programmed death. During apoptosis, the peroxidase activity and the fraction of CL-bound cyt c markedly increase, suggesting that CL may act as a switch to regulate cyt c's mitochondrial functions. Using cyclic voltammetry and equilibrium redox titrations, we show that the redox potential of cyt c shifts negatively by 350-400 mV upon binding to CL-containing membranes. Consequently, functions of cyt c as an electron transporter and cyt c reduction by Complex III are strongly inhibited. Further, CL/cyt c complexes are not effective in scavenging superoxide anions and are not effectively reduced by ascorbate. Thus, both redox properties and functions of cyt c change upon interaction with CL in the mitochondrial membrane, diminishing cyt c's electron donor/acceptor role and stimulating its peroxidase activity.

Cytochrome c was coordinatively bound to self-assembled monolayers of pyridine-terminated alkanethiols on Au and Ag electrodes. The mechanism of heterogeneous electron transfer of the immobilized protein was investigated by cyclic voltammetry and time-resolved surface-enhanced resonance Raman spectroelectrochemistry. The temperature, distance, and overpotential dependencies of the electron transfer rates indicate a change of mechanism from a tunneling controlled reaction at long distances (thicker films) to a solvent/protein friction controlled reaction at smaller distances (thinner films).

Horse heart cytochrome c was immobilized on four different self-assembled monolayer (SAM) films. The electron tunneling kinetics were studied in the different assemblies as a function of the ionic strength of the buffer solution using cyclic voltammetry. When cytochrome c is electrostatically immobilized, the standard electron exchange rate constant k0 decreases with the increase of the solution's ionic strength. In contrast, the protein covalently attached or ligated has a rate constant independent of the ionic strength. The inhomogeneity of electrostatically immobilized cytochrome c increases with the increase of the solution's ionic strength whereas that of the covalently attached protein is independent of the ionic strength. A comparison of these different electron-transfer behaviors suggests that the thermodynamically stable geometry of cytochrome c in the electrostatic assemblies is also an electron transfer favorable one. It suggests that the surface charges of cytochrome c are capable of guiding it into geometries in which its front surface faces the electron-transfer partner. The inhomogeneity observed in this study indicates that a distribution of cytochrome c orientations and thus a distribution of electron transfer rate constants exists.

The effect of molecular chirality on electron transmission is explored by photoelectrochemistry. Thiol-terminated chiral scaffold molecules containing a porphyrin chromophore were self-assembled on gold surfaces to form a monolayer. Incorporation of the SAM-coated gold into an electrochemical cell and illumination with visible light generated a cathodic photocurrent. When using circularly polarized light, the photocurrent displayed an asymmetry (different magnitude of photocurrent for right versus left polarization) that changed with the molecular chirality (left- or right-handedness of the scaffold). A symmetry constraint on the electronic coupling between the porphyrin and the organic scaffold is proposed as a possible mechanism for the photocurrent asymmetry.

Using a dissymmetrically-perturbed particle-in-a-box model, we demonstrate that the induced optical activity of chiral monolayer protected clusters, such as Whetten's Au28(SG)16 glutathione-passivated gold nanoclusters (J. Phys. Chem. B, 2000, 104, 2630-2641), could arise from symmetric metal cores perturbed by a dissymmetric or chiral field originating from the adsorbates. This finding implies that the electronic states of the nanocluster core are chiral, yet the lattice geometries of these cores need not be geometrically distorted by the chiral adsorbates. Based on simple chiral monolayer protected cluster models, we rationalize how the adsorption pattern of the tethering sulfur atoms has a substantial effect on the induced CD in the NIR spectral region, and we show how the chiral image charge produced in the core provides a convenient means of visualizing dissymmetric perturbations to the achiral gold nanocluster core.

U-shaped donor-bridge-acceptor molecules with different electronic couplings have been investigated as a function of temperature in solvents with slow polarization relaxation, in particular, N-methylacetamide (NMA) and N-methylpropionamide (NMP). At high temperature, the electron-transfer rate is well described by a nonadiabatic model; however, the rate at low temperature is controlled by the solvent friction. The change of the electron-transfer mechanism is discussed and compared with theoretical models.

The charge redistribution that occurs within dipolar molecules as they self-assemble into organized organic monolayer films has been studied. The extent of charge transfer is probed by work function measurements, using low-energy photoelectron spectroscopy (LEPS), contact potential difference (CPD), and X-ray photoelectron spectroscopy (XPS), with the latter providing fine details about the internal charge distribution along the molecule. In addition, two-photon photoelectron spectroscopy is applied to investigate the electronic structure of the adsorbed layers. We show that charge transfer acts to reduce the dipole-dipole interaction between the molecules but may either decrease or increase the molecule-to-surface dipole moment.

Four different self-assembled monolayer (SAM) electrode systems were examined electrochemically in order to better understand surface charge effects on the redox thermodynamics of immobilized horse heart cytochrome c (cyt c). Neutralization of protein surface charge upon adsorption on anionic COOH-terminated SAMs was found to cause substantial changes in the formal potential, as determined by cyclic voltammetry. For cyt c immobilized on negatively charged surfaces, the formal potential shifted to more negative values as the ionic strength was decreased, which is opposite to the trend displayed by solution cyt c. In contrast, immobilization to uncharged interfaces resulted in an ionic strength dependence for cyt c that is similar to its solution behavior. The results provide insight into the importance of surface charge on the formal potential of cyt c.

Single-molecule electrical conduction studies are used to evaluate how the molecular linking unit influences the tunneling efficiency in metal-molecule-metal (m-M-m) junctions. This work uses conducting-probe atomic force microscopy (CP-AFM) to compare the molecular conduction of two pi-bonded molecules: one with a single thiol linker, and another with a conjugated double thiol linker at both ends of the molecules. The results demonstrate that the molecule with conjugated double thiol linkers displays higher conduction in gold-molecule-gold junctions than nonconjugated single thiol-gold contacts.

This study investigates the fluorescence quenching of a polyphenyl based polyelectrolyte by positively charged macromolecules (proteins and dendrimers). This work shows that the fluorescence quenching of the dendrimer materials does not involve energy transfer or electron transfer but is correlated to the overall charge on the dendrimer and its size. The quenching is hypothesized to result from conformational changes that occur upon binding the polyelectrolyte to the protein or dendrimer. This mechanism is qualitatively different from that invoked for small-molecule analytes.

The electron-transfer rate constant is measured in two U-shaped donor-bridge-acceptor molecules over a wide range of temperature in acetonitrile and N-methylacetamide (NMA). The electron-transfer rate at high temperature can be well described by a nonadiabatic model of the reaction, but at low temperatures the rate in NMA becomes controlled by the solvent. The results are discussed in terms of theoretical models for the change in reaction mechanism and its dependence on the solute-solvent frictional coupling., (Copyright 2004 American Chemical Society)

The electronic coupling matrix elements attending the charge separation reactions of a C-shaped molecule containing an excited pyrene as the electron acceptor and a dimethylaniline as the donor are determined in aromatic, ether, and ester solvents. Band shape analyses of the charge-transfer emission spectra (CT --> S(0)) provide values of the reaction free energy, the solvent reorganization energy, and the vibrational reorganization energy in each solvent. The free energy for charge separation in benzene and toluene solvents is independently determined from the excited state equilibrium established between the locally excited pyrene S(1) state and the charge-transfer state. Analyses of the charge separation kinetics using the spectroscopically determined reorganization energies and reaction free energies indicate that the electronic coupling is solvent independent, despite the presence of a cleft between the donor and acceptor. Hence, solvent molecules are not involved in the coupling pathway. The orientations of the donor and acceptor units, relative to the spacer, are not rigidly constrained, and their torsional motions decrease solvent access to the cleft. Generalized Mulliken-Hush calculations show that rotation of the pyrene group about the bond connecting it to the spacer greatly modulates the magnitude of through-space coupling between the S(1) and CT states. The relationship between the torsional dynamics and the electron-transfer dynamics is discussed.

Using nanometer thick tunneling barriers with specifically attached cytochrome c, the electron-transfer rate constant was studied as a function of the SAM composition (alkane versus terthiophene), the omega-terminating group type (pyridine, imidazole, nitrile), and the solution viscosity. At large electrode-reactant separations, the pyridine terminated alkanethiols exhibit an exponential decline of the rate constant with increasing electron-transfer distance. At short separations, a plateau behavior, analogous to systems involving -COOH terminal groups to which cytochrome c can be attached electrostatically, is observed. The dependence of the rate constant in the plateau region on system properties is investigated. The rate constant is insensitive to the mode of attachment to the surface but displays a significant viscosity dependence, change with spacer composition (alkane versus terthiophene), and nature of the solvent (H(2)O versus D(2)O). Based on these findings and others, the conclusion is drawn that the charge-transfer rate constant at short distance is determined by polarization relaxation processes in the structure, rather than the electron tunneling probability or large-amplitude conformational rearrangement (gating). The transition in reaction mechanism with distance reflects a gradual transition between the tunneling and frictional mechanisms. This conclusion is consistent with data from a number of other sources as well.

A systematic determination of electronic coupling matrix elements in U-shaped molecules is demonstrated. The unique architecture of these systems allows for the determination of the electronic coupling through a pendant molecular moiety that resides between the donor and acceptor groups; this moiety quantifies the efficiency of electron tunneling through nonbonded contacts. Experimental electron-transfer rate constants and reaction free energies are used to calibrate a molecular-based model that describes the solvation energy. This approach makes it possible to experimentally determine electronic couplings and compare them with computational values.

A novel strategy for the immobilization of cytochrome c on the surface of chemically modified electrodes is demonstrated and used to investigate the protein's electron-transfer kinetics. Mixed monolayer films of alkanethiols and omega-terminated alkanethiols (terminated with pyridine, imidazole, or nitrile groups that are able to ligate with the heme) are used to adsorb cytochrome c to the surface of gold electrodes. The use of mixed films, as opposed to pure films, allows the concentration of adsorbed cytochrome to remain dilute and ensures a higher degree of homogeneity in their environment. The adsorbed protein is studied using electrochemical methods and scanning tunneling microscopy.

We report a new nonwrapping approach to noncovalent engineering of carbon nanotube surfaces by short, rigid functional conjugated polymers, poly(aryleneethynylene)s. Our technique not only enables the dissolution of various types of carbon nanotubes in organic solvents, which represents the first example of solubilization of carbon nanotubes via pi-stacking without polymer wrapping, but could also introduce numerous neutral and ionic functional groups onto the carbon nanotube surfaces.

Electron transmission experiments demonstrate a large asymmetry in the scattering probability of polarized electrons by thin organized films of chiral molecules. This large asymmetry results from the interaction of the electron's wavefunction with many scatterers (molecules) in the organized monolayer structure and represents a manifestation of quantum interference on the scale of supramolecular lengths.

The electron transfer through an organized organic monolayer of alkyl chains adsorbed on a silicon wafer has been studied. The silicon was used as an electrode in a three-electrode electrochemical cell, and the current versus voltage response was measured. The results show that when the chains in the monolayer are in the "all trans" configuration, the charge transfer efficiency is higher than when the chains have a "gauche" configuration. A mechanism rationalizing all the observations is suggested.