101. Multilocus sequence analysis and type III effector repertoire mining provide new insights into the evolutionary history and virulence of Xanthomonas oryzae
- Author
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Hajri, Ahmed, Brin, Chrystelle, Zhao, Shuai, David, Perrine, Feng, Jia-Xu, Koebnik, Ralf, Szurek, Boris, Verdier, Valérie, Boureau, Tristan, Poussier, Stéphane, Pathologie Végétale (PaVé), Institut National de la Recherche Agronomique (INRA)-AGROCAMPUS OUEST, Institut de Recherche pour le Développement (IRD), Centre IRD de Montpellier, Peuplements végétaux et bioagresseurs en milieu tropical (UMR PVBMT), Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Institut de Recherche pour le Développement (IRD)-Institut National de la Recherche Agronomique (INRA)-Université de La Réunion (UR), Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro), Region Pays de la Loire, Plant Health and Environment Department of Institut National de la Recherche Agronomique (INRA), Tunisian Government, from the Conseil General du Maineet-Loire, Tunisian Government, from INRA, and 'Bourses Doctorales en Alternance' of the French Embassy in China
- Subjects
PV.-ORYZAE ,TISSUE-SPECIFICITY ,DNA POLYMORPHISM ,CANDIDATE DETERMINANTS ,BACTERIAL-BLIGHT PATHOGEN ,GENETIC DIVERSITY ,GENOME SEQUENCE ,[SDV.BV]Life Sciences [q-bio]/Vegetal Biology ,PSEUDOMONAS-SYRINGAE ,POPULATION-STRUCTURE ,PATHOVAR ORYZAE - Abstract
International audience; Multilocus sequence analysis (MLSA) and type III effector (T3E) repertoire mining were performed to gain new insights into the genetic relatedness of Xanthomonas oryzae pv. oryzae (Xoo) and Xanthomonas oryzae pv. oryzicola (Xoc), two major bacterial pathogens of rice. Based on a collection of 45 African and Asian strains, we first sequenced and analysed three housekeeping genes by MLSA, Bayesian clustering and a median-joining network approach. Second, we investigated the distribution of 32 T3E genes, which are known to be major virulence factors of plant pathogenic bacteria, in all selected strains, by polymerase chain reaction and dot-blot hybridization methods. The diversity observed within housekeeping genes, as well as within T3E repertoires, clearly showed that both pathogens belong to closely related, but distinct, phylogenetic groups. Interestingly, these evolutionary groups are differentiated according to the geographical origin of the strains, suggesting that populations of Xoo and Xoc might be endemic in Africa and Asia, and thus have evolved separately. We further revealed that T3E gene repertoires of both pathogens comprise core and variable gene suites that probably have distinct roles in pathogenicity and different evolutionary histories. In this study, we carried out a functional analysis of xopO, a differential T3E gene between Xoo and Xoc, to determine the involvement of this gene in tissue specificity. Altogether, our data contribute to a better understanding of the evolutionary history of Xoo and Xoc in Africa and Asia, and provide clues for functional studies aiming to understand the virulence, host and tissue specificity of both rice pathogens.
- Published
- 2012