122 results on '"Vakar-Lopez, Funda"'
Search Results
102. Bone Microenvironment and Androgen Status Modulate Subcellular Localization of ErbB3 in Prostate Cancer Cells
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Cheng, Chien-Jui, primary, Ye, Xiang-cang, additional, Vakar-Lopez, Funda, additional, Kim, Jeri, additional, Tu, Shi-Ming, additional, Chen, Dung-Tsa, additional, Navone, Nora M., additional, Yu-Lee, Li-Yuan, additional, Lin, Sue-Hwa, additional, and Hu, Mickey C-T., additional
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- 2007
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103. 867: The Relationship between PSA and Tumor Volume Persists in Current Era
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Ochiai, Atsushi, primary, Vakar-Lopez, Funda, additional, Troncoso, Patricia, additional, and Babaian, Richard J., additional
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- 2006
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104. Protracted remission of metastatic epithelioid angiosarcoma with weekly infusion of doxorubicin, paclitaxel, and cisplatin
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Mathew, Paul, primary, Vakar-Lopez, Funda, additional, and Troncoso, Patricia, additional
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- 2006
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105. Up-regulation of MDA-BF-1, a secreted isoform of ErbB3, in metastatic prostate cancer cells and activated osteoblasts in bone marrow
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Vakar-Lopez, Funda, primary, Cheng, Chien-Jui, additional, Kim, Jeri, additional, Shi, Gary G, additional, Troncoso, Patricia, additional, Tu, Shi-Ming, additional, Yu-Lee, Li-yuan, additional, and Lin, Sue-Hwa, additional
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- 2004
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106. Identification of Sp2 as a Transcriptional Repressor of Carcinoembryonic Antigen-Related Cell Adhesion Molecule 1 in Tumorigenesis
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Phan, Dillon, primary, Cheng, Chien-Jui, additional, Galfione, Matthew, additional, Vakar-Lopez, Funda, additional, Tunstead, James, additional, Thompson, Nancy E., additional, Burgess, Richard R., additional, Najjar, Sonia M., additional, Yu-Lee, Li-Yuan, additional, and Lin, Sue-Hwa, additional
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- 2004
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107. Glycogen Synthase Kinase-3β Is Involved in the Phosphorylation and Suppression of Androgen Receptor Activity
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Salas, Thomas R., primary, Kim, Jeri, additional, Vakar-Lopez, Funda, additional, Sabichi, Anita L., additional, Troncoso, Patricia, additional, Jenster, Guido, additional, Kikuchi, Akira, additional, Chen, Shao-Yong, additional, Shemshedini, Lirim, additional, Suraokar, Milind, additional, Logothetis, Christopher J., additional, DiGiovanni, John, additional, Lippman, Scott M., additional, and Menter, David G., additional
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- 2004
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108. Epithelial Phenotype in Ewing's Sarcoma/Primitive Neuroectodermal Tumor
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Vakar-Lopez, Funda, primary, Ayala, Alberto G., additional, Raymond, A. Kevin, additional, and Czerniak, Bogdan, additional
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- 2000
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109. Androgen Receptor Variants Occur Frequently in Castration Resistant Prostate Cancer Metastases.
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Xiaotun Zhang, Morrissey, Colm, Shihua Sun, Ketchandji, Melanie, Nelson, Peter S., True, Lawrence D., Vakar-Lopez, Funda, Vessella, Robert L., and Plymate, Stephen R.
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ANDROGENS ,PROSTATE cancer ,IMMUNOGLOBULINS ,GENETIC regulation ,METASTASIS ,TISSUES - Abstract
Background: Although androgens are depleted in castration resistant prostate cancer (CRPC), metastases still express nuclear androgen receptor (AR) and androgen regulated genes. We recently reported that C-terminal truncated constitutively active AR splice variants contribute to CRPC development. Since specific antibodies detecting all C-terminal truncated AR variants are not available, our aim was to develop an approach to assess the prevalence and function of AR variants in prostate cancer (PCa). Methodology/Principal Findings: Using 2 antibodies against different regions of AR protein (N- or C-terminus), we successfully showed the existence of AR variant in the LuCaP 86.2 xenograft. To evaluate the prevalence of AR variants in human PCa tissue, we used this method on tissue microarrays including 50 primary PCa and 162 metastatic CRPC tissues. RT-PCR was used to confirm AR variants. We observed a significant decrease in nuclear C-terminal AR staining in CRPC but no difference between N- and C-terminal AR nuclear staining in primary PCa. The expression of the AR regulated proteins PSA and PSMA were marginally affected by the decrease in C-terminal staining in CRPC samples. These data suggest that there is an increase in the prevalence of AR variants in CRPC based on our ability to differentiate nuclear AR expression using N- and C-terminal AR antibodies. These findings were validated using RT-PCR. Importantly, the loss of C-terminal immunoreactivity and the identification of AR variants were different depending on the site of metastasis in the same patient. Conclusions: We successfully developed a novel immunohistochemical approach which was used to ascertain the prevalence of AR variants in a large number of primary PCa and metastatic CRPC. Our results showed a snapshot of overall high frequency of C-terminal truncated AR splice variants and site specific AR loss in CRPC, which could have utility in stratifying patients for AR targeted therapeutics. [ABSTRACT FROM AUTHOR]
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- 2011
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110. Pathological Features of Benign and Malignant Epithelial Abnormalities of the Penis in Transgenic Mice. An Experimental Model to Study HPV-Related Penile Carcinogenesis. Evaluation of 87 Cases
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Canete-Portillo, Sofia, Medeiros-Fonseca, Beatriz, Mestre, Veronica, Estevao, Diogo, Sanchez, Diego F., Jose Fernandez-Nestosa, Maria, Casaca, Fatima, Silva, Sandra, Brito, Haissa, Felix, Ana, Medeiros, Rui, Colaco, Bruno, Paula Oliveira, Bastos, Margarida, Nelson, Peter, Vakar-Lopez, Funda, Gaivao, Isabel, Brito, Luciane, Lopes, Carlos, Cubilla, Antonio, and Da Costa, Rui Gil
111. Prostate-specific Antigen (PSA) Screening and a Lifesaving Cardiac Transplant.
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Kanabolo, Diboro, True, Lawrence, Vakar-Lopez, Funda, Tretiakova, Maria, and Nyame, Yaw A.
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HEART transplantation , *PROSTATE-specific antigen , *MEDICAL screening , *PROSTATE tumors - Published
- 2022
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112. A Phase 1/2 Study of Rapamycin and Cisplatin/Gemcitabine for Treatment of Patients With Muscle-Invasive Bladder Cancer.
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Makrakis, Dimitrios, Wright, Jonathan L., Roudier, Martine P., Garcia, Jose, Vakar-Lopez, Funda, Porter, Michael P., Yan Wang, Dash, Atreya, Lin, Daniel, Schade, George, Winters, Brian, Xiotun Zhang, Nelson, Peter, Mostaghel, Elahe, Cheng, Heather H., Schweizer, Michael, Holt, Sarah K., Gore, John L., Yu, Evan Y., and Hung Ming Lam
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BLADDER cancer treatment , *RAPAMYCIN , *CISPLATIN , *CANCER invasiveness , *CYSTECTOMY , *MEDICAL quality control - Abstract
Platinum-based NAC followed by cystectomy is standard of care for MIBC, however improvement of response rates is needed. In this phase I/II trial, neoadjuvant gemcitabine-cisplatin-rapamycin combination was used to suppress response to platinum-derived DNA damage by the tumor microenvironment. Although rapamycin successfully suppressed damage response, treatment efficacy did not improve, suggesting the existence of alternative platinum resistance pathways. Introduction: Cisplatin-based neoadjuvant chemotherapy (NAC) followed by cystectomy is the standard for muscleinvasive bladder cancer (MIBC), however, NAC confers only a small survival benefit and new strategies are needed to increase its efficacy. Pre-clinical data suggest that in response to DNA damage the tumor microenvironment (TME) adopts a paracrine secretory phenotype dependent on mTOR signaling which may provide an escape mechanism for tumor resistance, thus offering an opportunity to increase NAC effectiveness with mTOR blockade. Patients & Methods: We conducted a phase I/II clinical trial to assess the safety and efficacy of gemcitabine-cisplatin-rapamycin combination. Grapefruit juice was administered to enhance rapamycin pharmacokinetics by inhibiting intestinal enzymatic degradation. Phase I was a dose determination/safety study followed by a single arm Phase II study of NAC prior to radical cystectomy evaluating pathologic response with a 26% pCR rate target. Results: In phase I, 6 patients enrolled, and the phase 2 dose of 35 mg rapamycin established. Fifteen patients enrolled in phase II; 13 were evaluable. Rapamycin was tolerated without serious adverse events. At the preplanned analysis, the complete response rate (23%) did not meet the prespecified level for continuing and the study was stopped due to futility. With immunohistochemistry, successful suppression of the mTOR signaling pathway in the tumor was achieved while limited mTOR activity was seen in the TME. Conclusion: Adding rapamycin to gemcitabine-cisplatin therapy for patients with MIBC was well tolerated but failed to improve therapeutic efficacy despite evidence of mTOR blockade in tumor cells. Further efforts to understand the role of the tumor microenvironment in chemotherapy resistance is needed. [ABSTRACT FROM AUTHOR]
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- 2023
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113. Small Cell Bladder Cancer: Treatment Patterns for Local Disease and Associated Outcomes. A Retrospective Cohort Study.
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Bakaloudi, Dimitra Rafailia, Koehne, Elizabeth L., Diamantopoulos, Leonidas N., Holt, Sarah K., Sekar, Rishi R., Ghali, Fady, Vakar-Lopez, Funda, Nyame, Yaw A., Psutka, Sarah P., Gore, John L., de la Calle, Claire M., Lin, Daniel W., Schade, George R., Liao, Jay J., Hsieh, Andrew C., Yezefski, Todd, Hawley, Jessica E., Yu, Evan Y., Montgomery, R. Bruce, and Grivas, Petros
- Abstract
Small cell bladder cancer (SCBC) is a rare histologic subtype with relative paucity of data regarding treatment response and outcomes. We reviewed 2 databases to compare outcomes in patients with localized SCBC treated with cystectomy versus concurrent chemoradiotherapy (CCRT). We hypothesized that survival would be similar with these therapy approaches. We retrospectively reviewed our institutional and SEER-Medicare databases to identify patients with SCBC. Overall survival (OS) was determined from the date of diagnosis to last follow-up/death. For those with nonmetastatic disease, a multivariate Cox analysis was used to compare locoregional therapy with neoadjuvant chemotherapy (NAC) + cystectomy versus CCRT. We identified 53 patients in our institutional database and 1166 patients in SEER-Medicare with localized SCBC. Median OS (mOS) with NAC + cystectomy was 46 months (95% CI, 21-72) and 45 months (95% CI, 0-104) in the institutional and SEER-Medicare databases, respectively, whereas mOS with CCRT was 26 months (95% CI, 5-47) and 23 months (95% CI, 18-28) in the 2 series, respectively. In multivariate analysis, NAC followed by cystectomy was associated with an approximately 30% reduction in mortality compared to CCRT in both institutional and national databases but did not reach statistical significance (Institution HR 0.71, 95% CI, 0.22-2.4, P =.58; SEER HR 0.73, 95% CI, 0.49-1.08; P =.11). SCBC is very aggressive with limited survival observed in our institutional and SEER-Medicare datasets regardless of locoregional therapy used. There is an unmet need to define the optimal locoregional therapy for nonmetastatic stage and identify novel therapeutic targets. Small cell bladder cancer (SCBC) is a rare and aggressive histologic subtype of bladder cancer. We reviewed SEER-Medicare and our institutional databases to compare outcomes in patients with localized SCBC treated with cystectomy versus concurrent chemoradiotherapy (CCRT). Neoadjuvant chemotherapy followed by cystectomy was associated with a nonsignificant 30% reduction in mortality compared to CCRT. [ABSTRACT FROM AUTHOR]
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- 2024
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114. Outcome Analysis of a Series of Mixed-Grade, Non-muscle Invasive, Papillary Carcinomas of the Bladder.
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Chambers, Meagan, Andre, Alexa T., Wright, Jonathan L., Vakar-Lopez, Funda, Tretiakova, Maria, Reder, Nicholas P., Haffner, Michael C., and True, Lawrence D.
- Abstract
Introduction. Papillary urothelial carcinomas are currently graded as either low- or high-grade tumors based on World Health Organization (WHO) 2022 guidelines for genitourinary tumors. However, a minority of tumors are mixed-grade tumors, composed predominantly of low-grade cancer with a minor high-grade component. In the 2022 WHO these cancers are recognized as having outcomes comparable to low-grade cancers, although data to date has been limited.Methods. The pathology records of a large academic institution were searched for mixed-grade, non-muscle invasive papillary carcinomas of the bladder and ureter in order to characterize prognosis of these cancers.Results . Of 136 cancers, the majority (n = 104, 76.5%) were solitary, mixed-grade tumors, while 21 (15.4%) had a concurrent low-grade cancer and 11 (8.1%) had multiple mixed-grade tumors at the time of diagnosis. At follow-up (median 48.3 months, range = 1.3 months-18.1 years), 71 cancers recurred (52.2%): 52 (38.2%) as low- or mixed-grade cancers and 18 (13.2%) as high-grade cancers. There were no instances of stage-progression to>p T2.Conclusions . The clinical outcome of mixed-grade carcinomas was similar to what has been reported for low-grade carcinomas. Based on our results, and prior congruent studies of mixed-grade lesions, these lesions may be regarded as a distinct sub-category with a better prognosis than high-grade tumors. [ABSTRACT FROM AUTHOR]- Published
- 2024
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115. Transcriptional-translational conflict is a barrier to cellular transformation and cancer progression.
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Jana, Sujata, Brahma, Sandipan, Arora, Sonali, Wladyka, Cynthia L., Hoang, Patrick, Blinka, Steven, Hough, Rowan, Horn, Jessie L., Liu, Yuzhen, Wang, Li-Jie, Depeille, Philippe, Smith, Eric, Montgomery, Robert B., Lee, John K., Haffner, Michael C., Vakar-Lopez, Funda, Grivas, Petros, Wright, Jonathan L., Lam, Hung-Ming, and Black, Peter C.
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DNA repair , *CANCER invasiveness , *GENETIC translation , *UROTHELIUM , *CELL transformation , *PROTEIN synthesis - Abstract
We uncover a tumor-suppressive process in urothelium called transcriptional-translational conflict caused by deregulation of the central chromatin remodeling component ARID1A. Loss of Arid1a triggers an increase in a nexus of pro-proliferation transcripts, but a simultaneous inhibition of the eukaryotic elongation factor 2 (eEF2), which results in tumor suppression. Resolution of this conflict through enhancing translation elongation speed enables the efficient and precise synthesis of a network of poised mRNAs resulting in uncontrolled proliferation, clonogenic growth, and bladder cancer progression. We observe a similar phenomenon in patients with ARID1A-low tumors, which also exhibit increased translation elongation activity through eEF2. These findings have important clinical implications because ARID1A-deficient, but not ARID1A-proficient, tumors are sensitive to pharmacologic inhibition of protein synthesis. These discoveries reveal an oncogenic stress created by transcriptional-translational conflict and provide a unified gene expression model that unveils the importance of the crosstalk between transcription and translation in promoting cancer. [Display omitted] • Transcriptional-translational conflict is tumor suppressive in bladder epithelium • De-repression of translation elongation enables oncogenic phenotypes • ARID1A-low tumors are sensitive to drug-induced transcriptional-translational conflict • Impaired DNA damage response is a collateral effect of gene expression conflict Jana et al. reveal that ARID1A orchestrates a molecular conflict between gene-specific DNA transcription and mRNA translation in the bladder epithelium that is tumor suppressive. Transcriptional-translational conflict represents a new molecular stress that protects cells from transformation and must be overcome to enable cancer phenotypes. [ABSTRACT FROM AUTHOR]
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- 2023
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116. Enhancing upper tract urothelial carcinoma diagnosis: Utility of cytokeratin 17 and CK20/CD44/p53 immunohistochemical panel.
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Irwin T, Donlan AW, Owens L, Alvarez R, Vakar-Lopez F, and Tretiakova M
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- Humans, Biopsy, Carcinoma, Transitional Cell diagnosis, Carcinoma, Transitional Cell pathology, Carcinoma, Transitional Cell metabolism, Diagnosis, Differential, Neoplasm Grading, Predictive Value of Tests, Reproducibility of Results, Urinary Bladder Neoplasms diagnosis, Urinary Bladder Neoplasms pathology, Urologic Neoplasms diagnosis, Urologic Neoplasms pathology, Biomarkers, Tumor analysis, Hyaluronan Receptors analysis, Hyaluronan Receptors metabolism, Immunohistochemistry, Keratin-17 analysis, Keratin-20 analysis, Keratin-20 metabolism, Tumor Suppressor Protein p53 analysis, Urothelium pathology, Urothelium chemistry
- Abstract
Upper tract urothelial carcinoma (UTUC) presents diagnostic challenges due to small biopsy specimen size, poor orientation, and technical obstacles that can yield equivocal diagnoses. This uncertainty often mandates repeated biopsies to evaluate the necessity of nephroureterectomy. Prior studies have suggested cytokeratin 17 (CK17) immunostain as an adjunctive tool for diagnosing bladder urothelial neoplasia in both urine cytology and tissue biopsy specimens. We evaluated the utility of CK17 in differentiating UTUC from benign urothelium and its ability to stratify low-grade from high-grade neoplasia. Our study involved a cohort of previously diagnosed cytology (n = 29) and tissue specimens from biopsies and resections (n = 85). We evaluated CK17 staining percentage in cytology and tissue samples and localization patterns in biopsy/resection samples. Our findings showed a statistically significant distinction (p < 0.05) between UTUC and benign tissue specimens based on full thickness localization pattern (odds ratio 8.8 [95% CI 1.53-67.4]). The percentage of CK17 staining failed to significantly differentiate neoplastic from non-neoplastic cases in cytology or tissue samples. Additionally, based on prior research showing the efficacy of CK20/CD44/p53 triple panel in bladder urothelial neoplasia, we utilized tissue microarrays to evaluate if these markers could distinguish UTUC from benign urothelium. We found that CK20/CD44/p53, individually or in combination, could not distinguish urothelial neoplasia from non-neoplasia. Full thickness CK17 urothelial localization by immunohistochemistry was highly reproducible with excellent interobserver agreement and may play a supplementary role in distinguishing upper tract urothelial neoplasia from benign urothelium., Competing Interests: Declaration of Competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 Elsevier Inc. All rights reserved.)
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- 2024
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117. High expression of Trop2 is associated with aggressive localized prostate cancer and is a candidate urinary biomarker.
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Liu S, Hawley SJ, Kunder CA, Hsu EC, Shen M, Westphalen L, Auman H, Newcomb LF, Lin DW, Nelson PS, Feng Z, Tretiakova MS, True LD, Vakar-Lopez F, Carroll PR, Simko J, Gleave ME, Troyer DA, McKenney JK, Brooks JD, Liss MA, and Stoyanova T
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- Male, Humans, Prostate metabolism, Prognosis, Prostate-Specific Antigen, Prostatectomy, Biomarkers, Tumor, Prostatic Neoplasms genetics, Prostatic Neoplasms surgery, Prostatic Neoplasms diagnosis
- Abstract
Distinguishing indolent from clinically significant localized prostate cancer is a major clinical challenge and influences clinical decision-making between treatment and active surveillance. The development of novel predictive biomarkers will help with risk stratification, and clinical decision-making, leading to a decrease in over or under-treatment of patients with prostate cancer. Here, we report that Trop2 is a prognostic tissue biomarker for clinically significant prostate cancer by utilizing the Canary Prostate Cancer Tissue Microarray (CPCTA) cohort composed of over 1100 patients from a multi-institutional study. We demonstrate that elevated Trop2 expression is correlated with worse clinical features including Gleason score, age, and pre-operative PSA levels. More importantly, we demonstrate that elevated Trop2 expression at radical prostatectomy predicts worse overall survival in men undergoing radical prostatectomy. Additionally, we detect shed Trop2 in urine from men with clinically significant prostate cancer. Our study identifies Trop2 as a novel tissue prognostic biomarker and a candidate non-invasive marker for prostate cancer., (© 2024. The Author(s).)
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- 2024
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118. Metastatic Bladder Cancer Expression and Subcellular Localization of Nectin-4 and Trop-2 in Variant Histology: A Rapid Autopsy Study.
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Ghali F, Vakar-Lopez F, Roudier MP, Garcia J, Arora S, Cheng HH, Schweizer MT, Haffner MC, Lee JK, Yu EY, Grivas P, Montgomery B, Hsieh AC, Wright JL, and Lam HM
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- Humans, Nectins, Autopsy, RNA, Messenger genetics, Carcinoma, Transitional Cell drug therapy, Urinary Bladder Neoplasms genetics, Urinary Bladder Neoplasms drug therapy, Immunoconjugates therapeutic use
- Abstract
Background: Nectin-4 and Trop-2 are transmembrane targets of FDA-approved antibody-drug conjugates (ADC) Enfortumab-vedotin (EV) and Sacituzumab govitecan (SG), respectively, for the treatment of metastatic urothelial carcinoma (mUC). The expression and role of Nectin-4 and Trop-2 in mUC variant histology is poorly described., Materials and Methods: We evaluate membranous and cytoplasmic protein expression, and mRNA levels of Nectin-4 and Trop-2 within matched primary and metastatic mUC samples to determine heterogeneity of ADC targets in mUC variants., Results: Patients with mUC were consented for rapid autopsy immediately after death. Tissues from matched primary and metastatic lesions were collected. A total of 67 specimens from 20 patients were analyzed: 27 were UC, 17 plasmacytoid (PUC), 18 UC with squamous differentiation (UCSD), and 5 neuroendocrine (NE); 10 from primary and 57 from metastatic sites. All histology except NE expressed moderate-high levels of Nectin-4 and Trop-2 by both immunohistochemistry and RNAseq. Nectin-4 demonstrated prominent cytoplasmic staining in metastatic PUC and UCSD. Trop-2 demonstrated strong cytoplasmic and membrane staining in primary and metastatic tumors. Interestingly, Nectin-4 and Trop-2 expression are positively correlated at both mRNA and protein levels., Conclusion: UC and non-NE variants express notable level of Nectin-4 and Trop-2 in both primary and metastatic lesions. Membrane staining of Nectin-4 and Trop-2 is present but cytoplasmic staining is a more common event in both mUC and mUC variant histology. These findings support evaluation of EV and SG in heavily treated variant histology BC and urge attention on the clinical relevance of cytoplasmic localization of ADC targets., Competing Interests: Disclosure Evan Yu: Institutional grants: Daiichi-Sankyo, Taiho, Dendreon, Merck, Seattle Genetics, Blue Earth, Bayer - DAROL and citDNA, Lantheus Consulting with honorarium (in the last 3 years): Jansen, Merck, Advanced Accelerator Applications, Bayer, Exelixis, Clovis, Abbvie, Sanofi-Genzyme Funda Vakar-Lopez: AstraZeneca - Virtual Advisory Board Member on metastatic urothelial cancer Petros Grivas: Institutional grants: Bavarian Nordic; Bristol-Myers Squibb; Clovis Oncology; Debiopharm; Merck KGaA; Gilead; Pfizer; MSD; QED Therapeutics; GlaxoSmithKline; G1 Therapeutics; Mirati Therapeutics Consulting: Aadi Bioscience; AstraZeneca; Asieris Pharmaceuticals, Astellas Pharma, BMS; Boston Gene, CG Oncology, Dyania Health; Exelixis; Lucence Health; Fresenius Kabi, G1 Therapeutics; Gilead; Guardant Health; ImmunityBio; Infinity Pharmaceuticals; Janssen; Merck KGaA; Mirati Therapeutics; MSD; Genentech/Roche; Pfizer; PureTech; Regeneron Pharmaceuticals; QED Therapeutics; Seattle Genetics, Strata Oncology, 4D Pharma PLC, UroGen, Silverback Therapeutics Bruce Montgomery: Institutional grants: AstraZeneca, Janssen Oncology, Clovis Oncology, Astellas Pharma, BeiGene John K. Lee: Institutional grants: Immunomedics Michael Schweizer: Institutional grants: Zenith Epigenetics, Bristol Myers Squibb, Merck, Immunomedics, Janssen, AstraZeneca, Pfizer, Madison Vaccines, Hoffman-La Roche, Tmunity, SignalOne Bio and Ambrx, Inc. Paid consultant and/or received Honoria: Sanofi, AstraZeneca, PharmaIn and Resverlogix. Jonathan Wright Institutional grants: Merck, Veracyte, Pacific Edge, Janssen, Nucleix. Consultant: Immunity Bio Royalties: UpToDate Other authors declare no potential conflicts of interest., (Copyright © 2023 Elsevier Inc. All rights reserved.)
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- 2023
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119. Artificial Intelligence-Based PTEN Loss Assessment as an Early Predictor of Prostate Cancer Metastasis After Surgery: A Multicenter Retrospective Study.
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Patel P, Harmon S, Iseman R, Ludkowski O, Auman H, Hawley S, Newcomb LF, Lin DW, Nelson PS, Feng Z, Boyer HD, Tretiakova MS, True LD, Vakar-Lopez F, Carroll PR, Cooperberg MR, Chan E, Simko J, Fazli L, Gleave M, Hurtado-Coll A, Thompson IM, Troyer D, McKenney JK, Wei W, Choyke PL, Bratslavsky G, Turkbey B, Siemens DR, Squire J, Peng YP, Brooks JD, and Jamaspishvili T
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- Humans, Male, Retrospective Studies, Middle Aged, Aged, Neoplasm Recurrence, Local pathology, Prostatectomy, Immunohistochemistry, Predictive Value of Tests, PTEN Phosphohydrolase genetics, Prostatic Neoplasms pathology, Prostatic Neoplasms surgery, Artificial Intelligence, Biomarkers, Tumor analysis
- Abstract
Phosphatase and tensin homolog (PTEN) loss is associated with adverse outcomes in prostate cancer and can be measured via immunohistochemistry. The purpose of the study was to establish the clinical application of an in-house developed artificial intelligence (AI) image analysis workflow for automated detection of PTEN loss on digital images for identifying patients at risk of early recurrence and metastasis. Postsurgical tissue microarray sections from the Canary Foundation (n = 1264) stained with anti-PTEN antibody were evaluated independently by pathologist conventional visual scoring (cPTEN) and an automated AI-based image analysis pipeline (AI-PTEN). The relationship of PTEN evaluation methods with cancer recurrence and metastasis was analyzed using multivariable Cox proportional hazard and decision curve models. Both cPTEN scoring by the pathologist and quantification of PTEN loss by AI (high-risk AI-qPTEN) were significantly associated with shorter metastasis-free survival (MFS) in univariable analysis (cPTEN hazard ratio [HR], 1.54; CI, 1.07-2.21; P = .019; AI-qPTEN HR, 2.55; CI, 1.83-3.56; P < .001). In multivariable analyses, AI-qPTEN showed a statistically significant association with shorter MFS (HR, 2.17; CI, 1.49-3.17; P < .001) and recurrence-free survival (HR, 1.36; CI, 1.06-1.75; P = .016) when adjusting for relevant postsurgical clinical nomogram (Cancer of the Prostate Risk Assessment [CAPRA] postsurgical score [CAPRA-S]), whereas cPTEN does not show a statistically significant association (HR, 1.33; CI, 0.89-2; P = .2 and HR, 1.26; CI, 0.99-1.62; P = .063, respectively) when adjusting for CAPRA-S risk stratification. More importantly, AI-qPTEN was associated with shorter MFS in patients with favorable pathological stage and negative surgical margins (HR, 2.72; CI, 1.46-5.06; P = .002). Workflow also demonstrated enhanced clinical utility in decision curve analysis, more accurately identifying men who might benefit from adjuvant therapy postsurgery. This study demonstrates the clinical value of an affordable and fully automated AI-powered PTEN assessment for evaluating the risk of developing metastasis or disease recurrence after radical prostatectomy. Adding the AI-qPTEN assessment workflow to clinical variables may affect postoperative surveillance or management options, particularly in low-risk patients., (Copyright © 2023 United States & Canadian Academy of Pathology. All rights reserved.)
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- 2023
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120. Analysis of separate training and validation radical prostatectomy cohorts identifies 0.25 mm diameter as an optimal definition for "large" cribriform prostatic adenocarcinoma.
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Chan E, McKenney JK, Hawley S, Corrigan D, Auman H, Newcomb LF, Boyer HD, Carroll PR, Cooperberg MR, Klein E, Fazli L, Gleave ME, Hurtado-Coll A, Simko JP, Nelson PS, Thompson IM, Tretiakova MS, Troyer D, True LD, Vakar-Lopez F, Lin DW, Brooks JD, Feng Z, and Nguyen JK
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- Humans, Male, Neoplasm Grading, Prostatectomy, Retrospective Studies, Adenocarcinoma pathology, Prostatic Neoplasms pathology
- Abstract
Cribriform growth pattern is well-established as an adverse pathologic feature in prostate cancer. The literature suggests "large" cribriform glands associate with aggressive behavior; however, published studies use varying definitions for "large". We aimed to identify an outcome-based quantitative cut-off for "large" vs "small" cribriform glands. We conducted an initial training phase using the tissue microarray based Canary retrospective radical prostatectomy cohort. Of 1287 patients analyzed, cribriform growth was observed in 307 (24%). Using Kaplan-Meier estimates of recurrence-free survival curves (RFS) that were stratified by cribriform gland size, we identified 0.25 mm as the optimal cutoff to identify more aggressive disease. In univariable and multivariable Cox proportional hazard analyses, size >0.25 mm was a significant predictor of worse RFS compared to patients with cribriform glands ≤0.25 mm, independent of pre-operative PSA, grade, stage and margin status (p < 0.001). In addition, two different subset analyses of low-intermediate risk cases (cases with Gleason score ≤ 3 + 4 = 7; and cases with Gleason score = 3 + 4 = 7/4 + 3 = 7) likewise demonstrated patients with largest cribriform diameter >0.25 mm had a significantly lower RFS relative to patients with cribriform glands ≤0.25 mm (each subset p = 0.004). Furthermore, there was no significant difference in outcomes between patients with cribriform glands ≤ 0.25 mm and patients without cribriform glands. The >0.25 mm cut-off was validated as statistically significant in a separate 419 patient, completely embedded whole-section radical prostatectomy cohort by biochemical recurrence, metastasis-free survival, and disease specific death, even when cases with admixed Gleason pattern 5 carcinoma were excluded. In summary, our findings support reporting cribriform gland size and identify 0.25 mm as an optimal outcome-based quantitative measure for defining "large" cribriform glands. Moreover, cribriform glands >0.25 mm are associated with potential for metastatic disease independent of Gleason pattern 5 adenocarcinoma., (© 2022. The Author(s).)
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- 2022
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121. Targetable mechanisms driving immunoevasion of persistent senescent cells link chemotherapy-resistant cancer to aging.
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Muñoz DP, Yannone SM, Daemen A, Sun Y, Vakar-Lopez F, Kawahara M, Freund AM, Rodier F, Wu JD, Desprez PY, Raulet DH, Nelson PS, van 't Veer LJ, Campisi J, and Coppé JP
- Subjects
- Aging pathology, Animals, Antineoplastic Agents therapeutic use, Biopsy, Breast pathology, Breast Neoplasms immunology, Breast Neoplasms pathology, Cell Line, Tumor, Cyclin-Dependent Kinase Inhibitor p16 metabolism, DNA Damage drug effects, Datasets as Topic, Female, Gene Expression Profiling, Gene Expression Regulation, Neoplastic immunology, Humans, Immunologic Surveillance drug effects, Immunologic Surveillance immunology, Male, Metalloendopeptidases metabolism, Mice, NK Cell Lectin-Like Receptor Subfamily K antagonists & inhibitors, NK Cell Lectin-Like Receptor Subfamily K immunology, NK Cell Lectin-Like Receptor Subfamily K metabolism, Prostate pathology, Prostatic Neoplasms immunology, Prostatic Neoplasms pathology, Tissue Array Analysis, Tumor Escape drug effects, Tumor Microenvironment genetics, Tumor Microenvironment immunology, Aging immunology, Antineoplastic Agents pharmacology, Breast Neoplasms drug therapy, Cellular Senescence immunology, Drug Resistance, Neoplasm immunology, Prostatic Neoplasms drug therapy, Tumor Escape immunology
- Abstract
Cellular senescence is a tumor suppressive mechanism that can paradoxically contribute to aging pathologies. Despite evidence of immune clearance in mouse models, it is not known how senescent cells (SnCs) persist and accumulate with age or in tumors in individuals. Here, we identify cooperative mechanisms that orchestrate the immunoevasion and persistence of normal and cancer human SnCs through extracellular targeting of natural killer receptor signaling. Damaged SnCs avoid immune recognition through MMPs-dependent shedding of NKG2D-ligands reinforced via paracrine suppression of NKG2D receptor-mediated immunosurveillance. These coordinated immunoediting processes are evident in residual, drug-resistant tumors from cohorts of >700 prostate and breast cancer patients treated with senescence-inducing genotoxic chemotherapies. Unlike in mice, these reversible senescence-subversion mechanisms are independent of p53/p16 and exacerbated in oncogenic RAS-induced senescence. Critically, the p16INK4A tumor suppressor can disengage the senescence growth arrest from the damage-associated immune senescence program, which is manifest in benign nevi lesions where indolent SnCs accumulate over time and preserve a non-pro-inflammatory tissue microenvironment maintaining NKG2D-mediated immunosurveillance. Our study shows how subpopulations of SnCs elude immunosurveillance, and reveals secretome-targeted therapeutic strategies to selectively eliminate -and restore the clearance of- the detrimental SnCs that actively persist after chemotherapy and accumulate at sites of aging pathologies.
- Published
- 2019
- Full Text
- View/download PDF
122. Radiologic-pathologic findings of solitary fibrous tumor of the prostate presenting as a large mass with delayed filling-in on MRI.
- Author
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Bhargava P, Lee JH, Gupta S, Seyal AR, Vakar-Lopez F, Moshiri M, and Dighe MK
- Abstract
We report a case of a solitary fibrous tumor of prostate presenting with urinary retention and a large prostate mass. We describe the clinical presentation, magnetic resonance imaging findings, and histopathology of this rare, benign tumor. Although clinical and radiologic appearances embrace various differential diagnoses including sarcoma, this mass was confirmed by histologic analysis following surgical resection. We report this rare, benign tumor to help the radiologist suggest the diagnosis when presented with a similar case.
- Published
- 2015
- Full Text
- View/download PDF
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