276 results on '"Tutino, M"'
Search Results
102. Far infrared radiofrequency (RF) generated as new non invasive method for the treatment of head and neck pathologies
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Tutino, M., primary, Restivo, S., additional, Casanova, S., additional, Ochoa, E., additional, Dispenza, C., additional, and Gargano, R., additional
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- 2005
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103. Far infrared radiofrequency generated a new non invasive method for the treatment of head and neck pathologies
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Tutino, M., primary, Restivo, S., additional, Casanova, S., additional, Ochoa, E., additional, Dispenza, C., additional, and Gargano, R., additional
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- 2005
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104. Fine Particulate Matter in Apulia (South Italy): Chemical Characterization.
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O'Dowd, Colin D., Wagner, Paul E., Amodio, M., Bruno, P., Caselli, M., de Gennaro, G., Ielpo, P., Daresta, B. E., Dambruoso, P. R., Placentino, C. M., and Tutino, M.
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- 2008
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105. Aspartate aminotransferase from the Antarctic bacterium Pseudoalteromonas haloplanktis TAC 125
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Birolo, Leila, primary, Tutino, M. Luisa, additional, Fontanella, Bianca, additional, Gerday, Charles, additional, Mainolfi, Katia, additional, Pascarella, Stefano, additional, Sannia, Giovanni, additional, Vinci, Floriana, additional, and Marino, Gennaro, additional
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- 2000
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106. Smoking and inflammatory bowel deseases (IBD)
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Guglielmi, V., primary, Tutino, M., additional, and Guerra, V., additional
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- 2000
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107. Tryptophan biosynthesis genes trpEGC in the thermoacidophilic archaebacterium Sulfolobus solfataricus
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Tutino, M L, primary, Scarano, G, additional, Marino, G, additional, Sannia, G, additional, and Cubellis, M V, additional
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- 1993
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108. Cirugía mínimamente invasiva en craneoestenosis.
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Díaz López, E. Ochoa, Chico, F., Tutino, M., Goodrich, J. T., Monasterio, F. Ortiz, S´nchez, A. Puente, and Rojas, S. Kurt
- Abstract
Copyright of Cirugía Plástica Ibero-Latinoamericana is the property of Cirugia Plastica Ibero-Latinoamericana and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)
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- 2006
109. Key Factors in Delisting Process in Italy: Empirical Evidence.
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Tutino, M., Panetta, I. C., and Laghi, E.
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LISTING of securities ,CASH flow ,PRIVATIZATION ,PUBLIC companies ,BUSINESS enterprises - Abstract
We investigated the characteristics and motives of Italian voluntary delisting observing a period of eleven years, 2001 to 2011. The final sample is made up of 53 industrial companies, compared with a control sample of 106 companies still listed in the period. Main goal is to assess if any signals can predict a delisting operation for listed companies in Italy and if Italian market shows differences with previous investigation in Continental Europe and US. Practical implications of results achieved can help to highlight on Public to Private phenomenon in Italy, still not enough observed considering the high number of delisted companies in the last decade relating to a relative small number of listed companies [ABSTRACT FROM AUTHOR]
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- 2013
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110. Effect of private equity minority stake deals on financial network of SMEs.
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Tutino, M. and Paoloni, M.
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QUALITATIVE research ,PRIVATE equity ,DEALS ,SMALL business - Abstract
The Paper presents the results of an empirical and qualitative research carried out to study the effect of deals involving private equity funds on the financial network of Small Medium Entities (SMEs). Through direct interviews and questionnaires, a sample of 17 Italian deals during the period 2005-2006 has been selected primarily to know about (I) the effect a deal with a private equity fund produces on financial network of SMEs (ii) the innovative value indicators these funds have introduced for monitoring the activities to boost the network of financial partners of SMEs while operating and managing their business. [ABSTRACT FROM AUTHOR]
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- 2012
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111. Cold-Adapted Esterases and Lipases: From Fundamentals to Application
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Luisa Tutino, M., di Prisco, Guido, Marino, Gennaro, and de Pascale, Donatella
- Abstract
Micro-organisms that thrive at low temperatures produce cold-adapted enzymes which display high catalytic efficiency, generally associated with low thermal stability. In the recent past, researchers and industries have focused the attention on cold-adapted enzymes, whose peculiar properties make them particularly interesting either for investigating stability/flexibility relationships, or for their potential application in industrial processes. Among these enzymes, lipases and esterases, have potential utilisations in a broad range of biotechnological applications. In fact, these biocatalysts represent the most widely used enzymes in biotechnology and organic chemistry. Modern methods of genetic engineering combined with growing knowledge of structure and function allow further adaptation to industrial needs and exploration of novel applications. Hence, in this review we attempt to offer an overview on some psychrophilic esterases and lipases; major details will be presented for ORF PSHAa0051 from Pseudoalteromonas haloplanktis TAC125, recently investigated by our team. In addition, potential biotechnological applications will be discussed.
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- 2009
112. A Rolling-Circle Plasmid from Psychrobacter sp. TA144: Evidence for a Novel Rep Subfamily
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Tutino, M. Luisa, Duilio, Angela, Moretti, Maria Angela, Sannia, Giovanni, and Marino, Gennaro
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In this paper we report the cloning and sequencing of two small plasmids, pTAUp and pTADw, from the Antarctic Gram-negative Psychrobacter sp strain TA144. The observation that pTAUp contains a putative Rep-coding gene (Psyrep) suggested that its duplication occurs via a rolling-circle replication mechanism. This hypothesis was confirmed by the identification of the pTAUp single-stranded DNA form. The putative pTAUp plus origin of replication was found at the 3′ end of the Psyrep by using an in vivo complementation assay. Structural similarities at the level of (i) gene organization, (ii) protein sequence, and (iii) nick site sequences strongly suggest that the psychrophilic enzyme belongs to a new subfamily of replication enzymes.
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- 2000
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113. Concentration and the chemical characterization of PM10 and PM2.5 in all the Italian territory
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Bolzacchini, E., Ferrero, L., Lo Porto, C., Perrone, Mg, Gennaro, G., Bruno, P., Caselli, M., Dambruoso, P. R., Daresta, B. E., Placentino, C. M., Tutino, M., Amodio, M., Baldacci, D., Stracquadanio, M., Laura Tositti, SERGIO ZAPPOLI, Gullotto, D., Librando, V., Minniti, Z., Perrini, G., Trincali, G., Becagli, Silvia, Mannini, A., Udisti, R., Paradisi, A., Tapparo, A., Barbieri, P., Capriglia, L., Cozzi, F., Maran, E., Reisenhofer, E., Sicardi, V., Fermo, P., Piazzalunga, A., Bolzacchini, E, Ferrero, L, Lo Porto, C, Perrone, MG, de Gennaro, G, Bruno, P, Caselli, M, Dambruoso, P.R, Daresta, B.E, Placentino, C.M, Tutino, M, Amodio, M, Baldacci, D, Stracquadanio, M, Tositti, L, Zappoli, S, Gullotto, D, Librando, V, Minniti, Z, Perrini, G, Trincali, G, Becagli, S, Mannini, A, Udisti, R, Paradisi, A, Tapparo, A, Barbieri, P, Capriglia, L, Cozzi, F, Maran, E, Reisenhofer, E, Sicardi, V, Fermo, P, Piazzalunga, A, Perrone, M, Dambruoso, P, Daresta, B, and Placentino, C
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CHIM/12 - CHIMICA DELL'AMBIENTE E DEI BENI CULTURALI ,PARTICULATE MATTER ,chemical characterization, particulate matter, Italy ,AEROSOL - Abstract
In order to studying the concentration and the chemical characterization of atmospheric particulate in the different season in all the Italian territory, inside the SITECOS project (PRIN 2004), a gravimetric sampling campaigns have been conducted. The PM10 and PM2.5 samplings were placed at the same time in different sites along the Italian peninsula. The sampling sites were: Bari, Taranto, Pollino (m.1800, remote site), Catania, Sesto Fiorentino, Florence, Arezzo, Grosseto, Capannori-LU, Prato, Montale-PT (rural site), Bologna and Monte Cimone (m.2100, remote site on Italian Apennines), Padua, Milan, San Colombano (m.2300, remote site on Italian Alps), Trieste and San Rocco a Muggia (TS). Daily PM2.5 and PM10 samples have been collected, to do a “sampling bank “, available for a further chemical / physical / toxicological characterization of atmospheric particulate Samples have been chemically characterized according to their main species: PAHs, inorganic ions and EC/OC in the PM2.5 samples; elements in the PM10 samples. In the Padana plain (Milan, Bologna, Padua) the PM concentration is uniform and a strong seasonal trend is observed, with the highest values in winter time and the lowest values in summer while PM concentration in S. Colombano and Monte Cimone sites show an opposite seasonality, with the highest values in summer and the lowest ones in winter. These data show a slight evolution during the winter’s day because of the height of the dispersion layer, in connection with microclimatic parameters; for example in Milan city during acute cases of pollution, the height is no more that 300m (Ferrero et al., 2006). Remote sites of S. Colombano and Monte Cimone in the winter time are above the boundary layer while during summer period they are on it. In the center of Italy PM seasonality concentration is less important while in the South Italy and in Sicily there is any seasonal trend. The reasons are, in part, linked to the different meteoclimatic features present in the Italian peninsula. Chemical composition data show a significant differences. In the North of Italy there is a strong seasonality of ionic component; in particular, during the winter, the Nitrate concentration is higher than the Sulfate one while the situation is opposed in summer. Ammonium does not show a strong seasonality, but it remains pretty constant; the same applies to Carbon. In the South of Italy cities, SO , NO 3 - and NH 4 + , primary component of inorganic ions, they do not show a seasonality with a Sulfate concentration that is always higher than Nitrates. In the center of Italy the seasonality is less marked thanks to the inorganic ions. Sulfate and Nitrate are similar from a percentage point of view. Also PAHs (expressed in weight/weight, quality of particulate), in the Padana plain, shows a strong seasonality, with a high percentage in the winter season and a lower one in summer (Ravindra et al., 2006). Over the year concentrations are constant in South of Italy, while in the center area, the seasonality is less strong. The vehicles traffic source is estimated to be one of the main PM source in the Padana plain, while in the South of Italy there are other sources like photochemistry reactivity, Saharan Dust events, etc. These results show a different role of PM sources along the Italian peninsula and they carry fundamental information for a correct management of the complex problem on a national scale. Ferrero, L., Lazzati, Z., Lo Porto, C., Perrone, M.G., Petraccone, S., Sangiorgi, G., Bolzacchini, E., (2006) Vertical distribution of particulate matter in the urban atmosphere of Milan. Poster. International Aerosol Conference 2006. Ravindra, K., Bencs, L., Wauters, E., Hoog, J., Deutsch, F., Roekens, E., Bleux, N., Berghmans, P., Van Grieken, R., (2006) Seasonal and sitespecific variation in vapour and aerosol phase PAHs over Flanders (Belgium) and their relation with anthropogenic activities. Atmospheric Environment 40 (2006) 771-785.
114. Chemical characterization of PM in the Apulia Region: Local and long-range transport contributions to particulate matter
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Amodio, M., Andriani, E., Angiuli, L., Assennato, G., Giua, R., Intini, M., Menegotto, M., Nocioni, A., Palmisani, J., Perrone, M. R., Placentino, C. M., Tutino, M., Gennaro, G., Alessia Di Gilio, M., Amodio, E., Andriani, L., Angiuli, G., Assennato, G., De Gennaro, A., Di Gilio, R., Giua, M., Intini, M., Menegotto, A., Nocioni, J., Palmisani, Perrone, Maria Rita, C. M., Placentino, and M., Tutino
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Particulate Matter ,Aerosol
115. Molecular characterization of a recombinant replication protein (Rep) from the Antarctic bacterium Psychrobacter sp. TA144
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Duilio, Angela, Tutino, M. Luisa, Matafora, Vittoria, Sannia, Giovanni, and Marino, Gennaro
- Abstract
The Antarctic Gram-negative bacterium Psychrobacter sp. TA144 contains two small cryptic plasmids, called pTAUp and pTADw. pTAUp encodes a replication enzyme (PsyRep) whose activity is responsible for plasmid replication via the rolling circle replication pathway. Several attempts to produce the wild-type biologically active PsyRep in Escherichia coli failed, possibly due to auto-regulation of the protein population. However, the serendipitous occurrence of a frameshift mutation during the preparation of an expression vector resulted in the over-production of a recombinant protein, changed in its last 14 amino acid residues (PsyRep*), that precipitates in insoluble form. The purification of PsyRep* inclusion bodies and the successful refolding of the cold adapted enzyme allowed us to carry out its functional characterization. The mutated protein still displays a double stranded DNA nicking activity, while the change at the C-terminus impairs the enzyme specificity for the pTAUp cognate Ori+ sequence.
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- 2001
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116. Development of high-copy number plasmids in Pseudoalteromonas haloplanktis TAC125
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Marzia Calvanese, Cecilia Balestra, Andrea Colarusso, Concetta Lauro, Christopher Riccardi, Marco Fondi, Ermenegilda Parrilli, Maria Luisa Tutino, Calvanese, M., Balestra, C., Colarusso, A., Lauro, C., Riccardi, C., Fondi, M., Parrilli, E., and Tutino, M. L.
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High-copy plasmid ,Cold-adapted bacteria ,General Medicine ,Recombinant protein production ,Applied Microbiology and Biotechnology ,Pseudoalteromonas haloplanktis TAC125 ,Biotechnology - Abstract
Abstract The Antarctic bacterium Pseudoalteromonas haloplanktis TAC125 (PhTAC125) is considered an interesting alternative host for the recombinant protein production, that can be explored when the conventional bacterial expression systems fail. Indeed, the manufacture of all the difficult-to-express proteins produced so far in this bacterial platform gave back soluble and active products. Despite these promising results, the low yield of recombinant protein production achieved is hampering the wider and industrial exploitation of this psychrophilic cell factory. All the expression plasmids developed so far in PhTAC125 are based on the origin of replication of the endogenous pMtBL plasmid and are maintained at a very low copy number. In this work, we set up an experimental strategy to select mutated OriR sequences endowed with the ability to establish recombinant plasmids at higher multiplicity per cell. The solution to this major production bottleneck was achieved by the construction of a library of psychrophilic vectors, each containing a randomly mutated version of pMtBL OriR, and its screening by fluorescence-activated cell sorting (FACS). The selected clones allowed the identification of mutated OriR sequences effective in enhancing the plasmid copy number of approximately two orders of magnitude, and the production of the recombinant green fluorescent protein was increased up to twenty times approximately. Moreover, the molecular characterization of the different mutant OriR sequences allowed us to suggest some preliminary clues on the pMtBL replication mechanism that deserve to be further investigated in the future. Key points • Setup of an electroporation procedure for Pseudoalteromonas haloplanktis TAC125. • Two order of magnitude improvement of OriR-derived psychrophilic expression systems. • Almost twenty times enhancement in Green fluorescent protein production.
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- 2023
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117. Active human full-length CDKL5 produced in the Antarctic bacterium Pseudoalteromonas haloplanktis TAC125
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Andrea Colarusso, Concetta Lauro, Marzia Calvanese, Ermenegilda Parrilli, Maria Luisa Tutino, Colarusso, A., Lauro, C., Calvanese, M., Parrilli, E., and Tutino, M. L.
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Threonine ,Tricistronic design ,Proteome ,Antarctic Regions ,Psychrophilic gene expression system ,Bioengineering ,Protein Serine-Threonine Kinases ,Applied Microbiology and Biotechnology ,Recombinant Proteins ,In cellulo kinase assay ,Cold Temperature ,Pseudoalteromonas ,Recombinant protein aggregation ,Intrinsically disordered protein (IDP) ,Recombinant protein condensation ,Serine ,Antarctic bacterium ,Humans ,Epileptic Syndromes ,Protein Kinases ,Spasms, Infantile ,Biotechnology ,Peptide Hydrolases ,Bicistronic design ,Pseudoalteromonas haloplanktis TAC125 - Abstract
Background A significant fraction of the human proteome is still inaccessible to in vitro studies since the recombinant production of several proteins failed in conventional cell factories. Eukaryotic protein kinases are difficult-to-express in heterologous hosts due to folding issues both related to their catalytic and regulatory domains. Human CDKL5 belongs to this category. It is a serine/threonine protein kinase whose mutations are involved in CDKL5 Deficiency Disorder (CDD), a severe neurodevelopmental pathology still lacking a therapeutic intervention. The lack of successful CDKL5 manufacture hampered the exploitation of the otherwise highly promising enzyme replacement therapy. As almost two-thirds of the enzyme sequence is predicted to be intrinsically disordered, the recombinant product is either subjected to a massive proteolytic attack by host-encoded proteases or tends to form aggregates. Therefore, the use of an unconventional expression system can constitute a valid alternative to solve these issues. Results Using a multiparametric approach we managed to optimize the transcription of the CDKL5 gene and the synthesis of the recombinant protein in the Antarctic bacterium Pseudoalteromonas haloplanktis TAC125 applying a bicistronic expression strategy, whose generalization for recombinant expression in the cold has been here confirmed with the use of a fluorescent reporter. The recombinant protein largely accumulated as a full-length product in the soluble cell lysate. We also demonstrated for the first time that full-length CDKL5 produced in Antarctic bacteria is catalytically active by using two independent assays, making feasible its recovery in native conditions from bacterial lysates as an active product, a result unmet in other bacteria so far. Finally, the setup of an in cellulo kinase assay allowed us to measure the impact of several CDD missense mutations on the kinase activity, providing new information towards a better understanding of CDD pathophysiology. Conclusions Collectively, our data indicate that P. haloplanktis TAC125 can be a valuable platform for both the preparation of soluble active human CDKL5 and the study of structural–functional relationships in wild type and mutant CDKL5 forms. Furthermore, this paper further confirms the more general potentialities of exploitation of Antarctic bacteria to produce “intractable” proteins, especially those containing large intrinsically disordered regions.
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- 2022
118. Soluble Recombinant Protein Production in Pseudoalteromonas haloplanktis TAC125: The Case Study of the Full-Length Human CDKL5 Protein
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Marzia Calvanese, Andrea Colarusso, Concetta Lauro, Ermenegilda Parrilli, Maria Luisa Tutino, Calvanese, M., Colarusso, A., Lauro, C., Parrilli, E., and Tutino, M. L.
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Psychrophilic gene expression system pMAV ,Human CDKL5_5 ,GG medium ,Intrinsically disordered Protein ,Pseudoalteromonas haloplanktis TAC125 - Abstract
The Antarctic bacterium Pseudoalteromonas haloplanktis TAC125 is an unconventional protein production host displaying a notable proficiency in the soluble production of difficult proteins, especially of human origin. Furthermore, the accumulation of recombinant products in insoluble aggregates has never been observed in this bacterium, indicating that its cellular physicochemical conditions and/or folding processes are rather different from those observed in mesophilic bacteria. The ability of this cell factory was challenged by producing a human protein, the cyclin-dependent kinase-like 5 (hCDKL5) in the bacterium cytoplasm at 0 °C. Human CDKL5 is a serine/threonine protein kinase characterized by the absence of a defined structure for the last two/third of its sequence, one of the largest intrinsically disordered regions so far observed in a human protein. This large unstructured domain makes difficult its production in most of the conventional hosts since the recombinant product accumulates as insoluble aggregates and/or is heavily proteolyzed. As the full-length hCDKL5 production is of great interest both for basic science and as protein drug for an enzyme replacement therapy, its production in the Antarctic bacterium was tested by combining the use of a regulated psychrophilic gene expression system with the use of a defined growth medium optimized for the host growth at subzero temperature. This is the first report of soluble and full-length recombinant production of hCDKL5 protein in a bacterium.
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- 2022
119. Biofilm as an adaptation strategy to extreme conditions
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Ermenegilda Parrilli, Maria Luisa Tutino, Gennaro Marino, Parrilli, E., Tutino, M. L., and Marino, G.
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Microbial evolution ,Biofilm ,Extremophile ,General Earth and Planetary Sciences ,General Agricultural and Biological Sciences ,Microbial adaptation ,General Environmental Science - Abstract
Biofilm is the most successful and widely distributed form of life on earth, it is not simply structured collections of cells attached to surfaces but is a dynamic complex biological system able to respond to environmental changes. The biofilm characteristics make it unique and central to microbial evolution and adaptation. The ability to establish biofilms is a key trait for microorganisms growing in extreme environments like extreme temperature, high radiation, acidic or alkaline pH values, heavy metal pollution, and high salinity. In this article, we report the main features of biofilm and how these characteristics make biofilms a successful survival strategy in extreme conditions. All aspects examined in this article help to explain why biofilms are a successful survival strategy in extreme conditions and why the ability to establish biofilms is a key trait for microorganisms growing in extreme environments.
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- 2022
120. Genome analysis of a new biosurfactants source: The Antarctic bacterium Psychrobacter sp. TAE2020
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Christopher Riccardi, Caterina D'Angelo, Marzia Calvanese, Annarita Ricciardelli, Maria Luisa Tutino, Ermenegilda Parrilli, Marco Fondi, Riccardi, C., D'Angelo, C., Calvanese, M., Ricciardelli, A., Tutino, M. L., Parrilli, E., and Fondi, M.
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Surface-Active Agent ,Surface-Active Agents ,Biodegradation, Environmental ,Bacteria ,Next generation sequencing ,Psychrobacter sp ,Surfactant ,Genetics ,Cold-adapted bacteria ,Psychrobacter ,Aquatic Science ,Biotechnology - Abstract
Biosurfactants are considered a possible green alternative to chemical surfactants for countless commercial products including detergents and cleaners, personal care products, cosmetics, pharmaceuticals and therapeutics, food additives, emulsifiers, and dispersants for bioremediation. Organisms from extreme environments are well-adapted to the harsh conditions and represent an exciting avenue of discovery of naturally occurring biosurfactants. In this study, we report the genome analysis of Psychrobacter sp. TAE2020, an aerobic ƴ-proteobacterium isolated from an Antarctic coastal seawater sample collected in the vicinity of the French Antarctic station Dumont d'Urville, Terre Adelie (66°40' S; 140° 01' E) which has been shown to produce biosurfactants. Biochemical assays indicate that Psychrobacter sp. TAE2020 can produce one or more excellent emulsifiers and a biosurfactant which is able to reduce the surface tension of a Gut medium. Next generation sequencing and genome mining allowed the identification of a plethora of biosynthetic gene clusters possibly involved in the production of emulsifying agents, just waiting to be isolated and characterized. This study paves the way for a more thorough investigation into the potential biotechnological applications of this new Antarctic strain.
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- 2022
121. Modelling hCDKL5 heterologous expression in bacteria
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Marzia Calvanese, Mikolaj Dziurzynski, Marco Fondi, Concetta Lauro, Stefano Gonzi, Ermenegilda Parrilli, Andrea Colarusso, Veronica Ghini, Paola Turano, Maria Luisa Tutino, Fondi, M., Gonzi, S., Dziurzynski, M., Turano, P., Ghini, V., Calvanese, M., Colarusso, A., Lauro, C., Parrilli, E., and Tutino, M. L.
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0303 health sciences ,030306 microbiology ,Endocrinology, Diabetes and Metabolism ,CDKL5 ,Translation (biology) ,Computational biology ,Biology ,biology.organism_classification ,Biochemistry ,Microbiology ,Phenotype ,QR1-502 ,Article ,Pseudoalteromonas haloplanktis ,03 medical and health sciences ,Protein biosynthesis ,Coding region ,Heterologous expression ,protein production ,Overproduction ,Molecular Biology ,genome-scale metabolic modelling ,Function (biology) ,030304 developmental biology - Abstract
hCDKL5 refers to the human cyclin-dependent kinase that is primarily expressed in the brain where it exerts its function in several neuron districts. Mutations in its coding sequence are often causative of hCDKL5 deficiency disorder. The large-scale recombinant production of hCDKL5 is desirable to boost the translation of current therapeutic approaches into the clinic. However, this is hampered by the following features: i) almost two-thirds of hCDKL5 sequence are predicted to be intrinsically disordered, making this region more susceptible to proteolytic attack; ii) the cytoplasmic accumulation of the enzyme in eukaryotic host cells is associated to toxicity. The bacterium Pseudoalteromonas haloplanktis TAC125 (PhTAC125) is the only prokaryotic host in which the full-length production of hCDKL5 has been demonstrated. To date, a system-level understanding of the metabolic burden imposed by hCDKL5 production is missing, although it would be crucial for the upscaling of the production process. Here, we have combined experimental data on protein production and nutrients assimilation with metabolic modelling to infer the global consequences of hCDKL5 production in PhTAC125 and to identify potential overproduction targets. Our analyses showed a remarkable accuracy of the model in simulating the recombinant strain phenotype and also identified priority targets for optimized protein production.
- Published
- 2021
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122. Whole-genome sequencing of Pseudomonas sp. TAE6080, a strain capable of inhibiting Staphylococcus epidermidis biofilm
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Christopher Riccardi, Giorgio Giurato, Marco Fondi, Caterina D'Angelo, Annarita Ricciardelli, Maria Luisa Tutino, Marzia Calvanese, Ermenegilda Parrilli, Alessandro Weisz, Assunta Sellitto, Riccardi, C., D'Angelo, C., Calvanese, M., Ricciardelli, A., Sellitto, A., Giurato, G., Tutino, M. L., Weisz, A., Parrilli, E., and Fondi, M.
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0106 biological sciences ,Antarctic marine bacterium ,Anti-biofilm ,NGS ,Pseudomonas sp ,Aquatic Science ,Pseudomona ,010603 evolutionary biology ,01 natural sciences ,DNA sequencing ,Microbiology ,03 medical and health sciences ,Staphylococcus epidermidis ,Pseudomonas ,Anti-Bacterial Agent ,Genetics ,Gene ,030304 developmental biology ,Whole genome sequencing ,0303 health sciences ,biology ,Strain (chemistry) ,Whole Genome Sequencing ,Biofilm ,biology.organism_classification ,Anti-Bacterial Agents ,Biofilms ,Bacteria - Abstract
Antarctic bacteria are able to survive under extreme environmental conditions and have adapted to exploit some of the most ephemeral nutrient pockets. Importantly, such strains have been often shown to be capable of synthesizing compounds of valuable biotechnological importance. Here we show that Pseudomonas sp. TAE6080, a possibly new bacterium isolated in 1994 during water column samplings near the French Antarctic station Dumont d'Urville, is capable of inhibiting the formation of Staphylococcus epidermidis biofilm, known to be an important opportunistic pathogen in infections associated to medical devices. A better understanding of this bacterium can therefore provide useful insight on new bioactive molecules that could play a role against chronic infections. To this end, the anti-biofilm effect of cell-free supernatant of Pseudomonas sp. TAE6080 was evaluated on S. epidermidis RP62A biofilm formation, demonstrating that it significantly reduced its aggregation. Furthermore, genome sequencing, assembly and mining revealed a plethora of putative biosynthetic gene clusters that might be involved in biofilm disruption. The experimental and genomic data presented here open the venue to further investigations on the molecular basis underlying biofilm inhibition.
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- 2021
123. Pentadecanoic acid against Candida albicans-Klebsiella pneumoniae biofilm: towards the development of an anti-biofilm coating to prevent polymicrobial infections
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Caterina D'Angelo, Maria Michela Corsaro, Maria Luisa Tutino, Angela Casillo, Ermenegilda Parrilli, Emilia Galdiero, Annarita Ricciardelli, E. de Alteriis, Luisa Albarano, Angela Serena Maione, Galdiero, E., Ricciardelli, A., D'Angelo, C., de Alteriis, E., Maione, A., Albarano, L., Casillo, A., Corsaro, M. M., Tutino, M. L., and Parrilli, E.
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Candida albican ,Klebsiella pneumoniae ,Microorganism ,Genes, Fungal ,Polymicrobial biofilm ,Gene Expression ,Microbial Sensitivity Tests ,Pentadecanoic acid ,Polymicrobial biofilms ,Microbiology ,chemistry.chemical_compound ,Candida albicans ,Dimethylpolysiloxanes ,Molecular Biology ,chemistry.chemical_classification ,Aldehydes ,biology ,Fatty Acids ,Biofilm ,Fatty acid ,General Medicine ,biochemical phenomena, metabolism, and nutrition ,biology.organism_classification ,Anti-Bacterial Agents ,chemistry ,Genes, Bacterial ,Biofilms ,Anti-biofilm coating ,Bacteria - Abstract
The ability to form biofilms is a common feature of microorganisms, which can colonize a variety of surfaces, such as host tissues and medical devices, resulting in infections highly resistant to conventional drugs. This aspect is particularly critical in polymicrobial biofilms involving both fungi and bacteria, therefore, to eradicate such severe infections, new and effective anti-biofilm strategies are needed. The efficacy of pentadecanal and pentadecanoic acid as anti-biofilm agents has been recently reported against different bacterial strains. Their chemical similarity with diffusible signal factors (DSFs), plus the already known ability of fatty acids to act as anti-biofilm agents, suggested to explore their use against Candida albicans and Klebsiella pneumoniae mixed biofilm. In this work, we demonstrated the ability of both molecules to prevent the formation and destabilize the structure of the dual-species biofilm. Moreover, the pentadecanoic acid anti-biofilm coating, previously developed through the adsorption of the fatty acid on polydimethylsiloxane, was proved to prevent the polymicrobial biofilm formation in dynamic conditions by confocal laser scanning microscopy analysis. Finally, the evaluation of the expression levels of some biofilm-related genes of Candida albicans and Klebsiella pneumoniae treated with pentadecanoic acid provided some insights into the molecular mechanisms underpinning its anti-biofilm effect.
- Published
- 2021
124. Plant Dynamic Metabolic Response to Bacteriophage Treatment After Xanthomonas campestris pv. campestris Infection
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Marina Papaianni, Debora Paris, Sheridan L. Woo, Andrea Fulgione, Maria Manuela Rigano, Ermenegilda Parrilli, Maria L. Tutino, Roberta Marra, Gelsomina Manganiello, Angela Casillo, Antonio Limone, Astolfo Zoina, Andrea Motta, Matteo Lorito, Rosanna Capparelli, Papaianni, M., Paris, D., Woo, S. L., Fulgione, A., Rigano, M. M., Parrilli, E., Tutino, M. L., Marra, R., Manganiello, G., Casillo, A., Limone, A., Zoina, A., Motta, A., Lorito, M., and Capparelli, R.
- Subjects
Microbiology (medical) ,bacteriophages ,Phage therapy ,medicine.medical_treatment ,lcsh:QR1-502 ,metabolic response ,Microbiology ,Bacterial resistance ,lcsh:Microbiology ,Xanthomonas campestris pv. campestris ,Bacteriophage ,03 medical and health sciences ,bacteriophage ,Xanthomonas ,medicine ,Metabolomics ,Arabidopsis thaliana ,030304 developmental biology ,0303 health sciences ,biology ,030306 microbiology ,Biofilm ,fungi ,food and beverages ,biology.organism_classification ,NMR ,Xanthomonas campestris ,plant infection ,Lytic cycle ,gene expression ,Brassica oleracea ,Xanthomonas campestris pv campestris - Abstract
Periodic epidemics of black rot disease occur worldwide causing substantial yield losses. Xanthomonas campestris pv. campestris (Xcc) represents one of the most common bacteria able to cause the above disease in cruciferous plants such as broccoli, cabbage, cauliflower, and Arabidopsis thaliana. In agriculture, several strategies are being developed to contain the Xanthomonas infection. The use of bacteriophages could represent a valid and efficient approach to overcome this widespread phenomenon. Several studies have highlighted the potential usefulness of implementing phage therapy to control plant diseases as well as Xcc infection. In the present study, we characterized the effect of a lytic phage on the plant Brassica oleracea var. gongylodes infected with Xcc and, for the first time, the correlated plant metabolic response. The results highlighted the potential benefits of bacteriophages: reduction of bacterium proliferation, alteration of the biofilm structure and/or modulation of the plant metabolism and defense response.
- Published
- 2020
- Full Text
- View/download PDF
125. Pentadecanal and pentadecanoic acid coatings reduce biofilm formation of Staphylococcus epidermidis on PDMS
- Author
-
Ermenegilda Parrilli, Annarita Ricciardelli, Maria Luisa Tutino, Henny C. van der Mei, Angela Casillo, Maria Michela Corsaro, Personalized Healthcare Technology (PHT), Man, Biomaterials and Microbes (MBM), Ricciardelli, A., Casillo, A., Corsaro, M. M., Tutino, M. L., Parrilli, E., and van der Mei, H. C.
- Subjects
Microbiology (medical) ,biofilm-related infection ,anti-biofilm coating ,Pentadecanoic acid ,pentadecanal ,Pseudoalteromonas haloplanktis ,03 medical and health sciences ,chemistry.chemical_compound ,Silicone ,Coated Materials, Biocompatible ,PDMS ,Staphylococcus epidermidis ,Immunology and Allergy ,Dimethylpolysiloxanes ,Pseudoalteromonas haloplanktis TAC125 ,030304 developmental biology ,chemistry.chemical_classification ,Aldehydes ,0303 health sciences ,General Immunology and Microbiology ,biology ,Polydimethylsiloxane ,medical device ,030306 microbiology ,Fatty Acids ,flow cell ,Biofilm ,General Medicine ,Polymer ,biology.organism_classification ,Anti-Bacterial Agents ,3. Good health ,pentadecanoic acid ,Infectious Diseases ,Equipment and Supplies ,chemistry ,Chemical engineering ,Biofilms ,Bacteria - Abstract
Staphylococcus epidermidis is well known to be one of the major causes of infections related to medical devices, mostly due to its strong capacity to form device-associated biofilms. Nowadays, these infections represent a severe burden to the public health system and the necessity of novel antibacterial strategies for the treatment of these difficult-to-eradicate infections is urgent. The Antarctic marine bacterium Pseudoalteromonas haloplanktis TAC125 was found to be able to produce an anti-biofilm molecule, the pentadecanal, active against S. epidermidis. In this work, we modified one of the most widely used silicone-based polymers, polydimethylsiloxane (PDMS), by adsorption of pentadecanal and its most promising derivative, pentadecanoic acid, on the PDMS surface. The biofilm formation of S. epidermidis RP62A on both untreated and modified PDMS was performed in a parallel plate flow chamber system, demonstrating the capability of the proposed anti-biofilm coatings to strongly reduce the biofilm formation. Furthermore, drug-release capacity and long-term efficacy (21 days) were also proven for the pentadecanoic acid coating.
- Published
- 2020
126. Dalla contingenza alla resilienza: a quali condizioni il covid-19 alimenterà consolidation e regionalizzazione delle GVC?
- Author
-
Francesca Faggioni, Paoloni M, Tutino M., and Faggioni, Francesca
- Subjects
Covid 19, global value chains, consolidation, regionalizzazione, reshoring - Published
- 2020
127. Improvement of pseudoalteromonas haloplanktis tac125 as a cell factory: Iptg-inducible plasmid construction and strain engineering
- Author
-
Marzia Calvanese, Maria Luisa Tutino, Concetta Lauro, Ermenegilda Parrilli, Andrea Colarusso, Colarusso, A., Lauro, C., Calvanese, M., Parrilli, E., and Tutino, M. L.
- Subjects
Microbiology (medical) ,Lactose permease ,PP79 vector ,Mutant ,lac operon ,Microbiology ,Pseudoalteromonas haloplanktis ,law.invention ,03 medical and health sciences ,Plasmid ,law ,Virology ,IPTG ,Strain engineering ,lcsh:QH301-705.5 ,EcLacY ,030304 developmental biology ,0303 health sciences ,Expression vector ,biology ,Strain (chemistry) ,030306 microbiology ,Chemistry ,Pseudoalteromonas haloplankti ,Lon protease ,biology.organism_classification ,Recombinant protein production ,lcsh:Biology (General) ,Biochemistry ,Recombinant DNA - Abstract
Our group has used the marine bacterium Pseudoalteromonas haloplanktis TAC125 (PhTAC125) as a platform for the successful recombinant production of &ldquo, difficult&rdquo, proteins, including eukaryotic proteins, at low temperatures. However, there is still room for improvement both in the refinement of PhTAC125 expression plasmids and in the bacterium&rsquo, s intrinsic ability to accumulate and handle heterologous products. Here, we present an integrated approach of plasmid design and strain engineering finalized to increment the recombinant expression and optimize the inducer uptake in PhTAC125. To this aim, we developed the IPTG-inducible plasmid pP79 and an engineered PhTAC125 strain called KrPL LacY+. This mutant was designed to express the E. coli lactose permease and to produce only a truncated version of the endogenous Lon protease through an integration-deletion strategy. In the wild-type strain, pP79 assured a significantly better production of two reporters in comparison to the most recent expression vector employed in PhTAC125. Nevertheless, the use of KrPL LacY+ was crucial to achieving satisfying production levels using reasonable IPTG concentrations, even at 0 °, C. Both the wild-type and the mutant recombinant strains are characterized by an average graded response upon IPTG induction and they will find different future applications depending on the desired levels of expression.
- Published
- 2020
128. L’organismo di negoziazione e risoluzione delle controversie post – pandemia. Una proposta
- Author
-
Rabitti M, Paoloni M, Tutino M, and Rabitti, M
- Published
- 2020
129. Il risparmio alla prova d’urto del Covid-19. Il contributo della consulenza finanziaria
- Author
-
Massimo Caratelli, Paoloni M., Tutino M., and Caratelli, Massimo
- Published
- 2020
130. COVID-19, REDDITO E IMPRESE IN ITALIA: UNA GEOGRAFIA APPARENTEMENTE SCONTATA
- Author
-
lelo k, Paoloni M., Tutino M., and Lelo, K
- Published
- 2020
131. Dalla sopravvivenza allo sviluppo. Alcuni spunti dal settore vitivinicolo
- Author
-
Paoloni, Paola, Cosentino, Antonietta, DELLO STROLOGO, Alberto, Paloni M., Tutino M., Paoloni, Paola, Cosentino, Antonietta, and Dello Strologo, Alberto
- Subjects
incentivi pubblici ,innovazione tecnologica ,resilienza ,COVID-19 ,agro-alimentare - Published
- 2020
132. Anti-Virulence Activity of the Cell-Free Supernatant of the Antarctic Bacterium Psychrobacter sp. TAE2020 against Pseudomonas aeruginosa Clinical Isolates from Cystic Fibrosis Patients
- Author
-
Ermenegilda Parrilli, Angela Casillo, Maria Michela Corsaro, Michela Relucenti, Maria Luisa Tutino, Orlando Donfrancesco, Caterina D'Angelo, Marco Artini, Ersilia Fiscarelli, Gianluca Vrenna, Rosanna Papa, Laura Selan, Vanessa Tuccio Guarna Assanti, Papa, R., Vrenna, G., D'Angelo, C., Casillo, A., Relucenti, M., Donfrancesco, O., Corsaro, M. M., Vita Fiscarelli, E., Tuccio Guarna Assanti, V., Tutino, M. L., Parrilli, E., Artini, M., and Selan., L.
- Subjects
0301 basic medicine ,Microbiology (medical) ,Proteases ,030106 microbiology ,Virulence ,pyocyanin ,Context (language use) ,RM1-950 ,medicine.disease_cause ,anti-virulence ,Biochemistry ,Microbiology ,Article ,biofilm ,cystic fibrosis ,03 medical and health sciences ,chemistry.chemical_compound ,Pyocyanin ,medicine ,Pharmacology (medical) ,antarctic bacteria ,motility ,proteases ,pseudomonas aeruginosa ,SEM ,Antarctic bacteria ,General Pharmacology, Toxicology and Pharmaceutics ,cystic fibrosi ,biology ,Pseudomonas aeruginosa ,Biofilm ,protease ,biology.organism_classification ,Quorum sensing ,030104 developmental biology ,Infectious Diseases ,chemistry ,Therapeutics. Pharmacology ,Bacteria - Abstract
Pseudomonas aeruginosa is an opportunistic pathogen often involved in airway infections of cystic fibrosis (CF) patients. Its pathogenicity is related to several virulence factors, such as biofilm formation, motility and production of toxins and proteases. The expression of these virulence factors is controlled by quorum sensing (QS). Thus, QS inhibition is considered a novel strategy for the development of antipathogenic compounds acting on specific bacterial virulence programs without affecting bacterial vitality. In this context, cold-adapted marine bacteria living in polar regions represent an untapped reservoir of biodiversity endowed with an interesting chemical repertoire. In this paper, we investigated the biological activity of a supernatant derived from a novel Antarctic bacterium (SN_TAE2020) against specific virulence factors produced by P. aeruginosa strains isolated from FC patients. Our results clearly show a reduction in pyocyanin and protease production in the presence of SN_TAE2020. Finally, SN_TAE2020 was also able to strongly affect swarming and swimming motility for almost all tested strains. Furthermore, the effect of SN_TAE2020 was investigated on biofilm growth and texture, captured by SEM analysis. In consideration of the novel results obtained on clinical strains, polar bacteria might represent potential candidates for the discovery of new compounds limiting P. aeruginosa virulence in CF patients.
- Published
- 2021
- Full Text
- View/download PDF
133. Cell-wall associated polysaccharide from the psychrotolerant bacterium Psychrobacter arcticus 273-4: isolation, purification and structural elucidation
- Author
-
Maria Luisa Tutino, Maria Michela Corsaro, Annarita Ricciardelli, Angela Casillo, Ermenegilda Parrilli, Casillo, A., Ricciardelli, A., Parrilli, E., Tutino, M. L., and Corsaro, M. M.
- Subjects
Magnetic Resonance Spectroscopy ,Size-exclusion chromatography ,Polysaccharide ,Microbiology ,Cell wall ,03 medical and health sciences ,Residue (chemistry) ,Cell Wall ,Polysaccharides ,Psychrobacter arcticus ,Pseudaminic acid ,030304 developmental biology ,chemistry.chemical_classification ,0303 health sciences ,Psychrotolerant ,biology ,030306 microbiology ,Chemistry ,Psychrobacter ,General Medicine ,Nuclear magnetic resonance spectroscopy ,Isolation (microbiology) ,biology.organism_classification ,Biochemistry ,Molecular Medicine ,Extracellular polysaccharide (EPS) ,Capsular polysaccharide ,Bacteria - Abstract
In this paper, the structure of the capsular polysaccharide isolated from the psychrotolerant bacterium Psychrobacter arcticus 273-4 is reported. The polymer was purified by gel filtration chromatography and the structure was elucidated by means of one- and two-dimensional NMR spectroscopy, in combination with chemical analyses. The polysaccharide consists of a trisaccharidic repeating unit containing two residues of glucose and a residue of a N,N-diacetyl-pseudaminic acid.
- Published
- 2019
134. The outer membrane glycolipids of bacteria from cold environments: Isolation, characterization, and biological activity
- Author
-
Maria Luisa Tutino, Ermenegilda Parrilli, Angela Casillo, Maria Michela Corsaro, Casillo, A., Parrilli, E., Tutino, M. L., and Corsaro, M. M.
- Subjects
Lipopolysaccharides ,0301 basic medicine ,Gram-negative bacteria ,Acclimatization ,Microorganism ,Isolation and characterization ,01 natural sciences ,Applied Microbiology and Biotechnology ,Microbiology ,Lipid A ,03 medical and health sciences ,Gram-Negative Bacteria ,Gammaproteobacteria ,Ecology ,biology ,010405 organic chemistry ,Cold adaptation ,Structure ,biology.organism_classification ,Flavobacteriaceae ,0104 chemical sciences ,Cold Temperature ,Outer membrane ,Bacterial Outer Membrane ,030104 developmental biology ,Membrane ,Biochemistry ,lipids (amino acids, peptides, and proteins) ,Glycolipids ,Bacterial outer membrane ,Smooth-LPS ,Bacteria ,Rough-LPS - Abstract
Lipopolysaccharides (LPSs) are the main components of the external leaflet of the outer membrane of Gram-negative bacteria. Microorganisms that colonize permanently or transiently cold habitats have evolved an array of structural adaptations, some of which involve components of bacterial membranes. These adaptations assure the perfect functionality of the membrane even at freezing or sub-freezing growth temperatures. This review summarizes the state-of-the-art information concerning the structural features of the LPSs produced by cold-adapted bacteria. The LPS structure has recently been elucidated from species mainly belonging to Gammaproteobacteria and Flavobacteriaceae. Although the reported structural heterogeneity may arise from the phylogenetic diversity of the analyzed source strains, some generalized trends can be deduced. For instance, it is clear that only a small portion of LPSs displays the O-chain. In addition, the biological activity of the lipid A portion from several cold-adapted strains is reported.
- Published
- 2019
135. The role of equity stakes and industry expertise in mitigating the risk of financial distress. Are private equity sponsors really better than other types of owners?
- Author
-
Ilaria Barbaraci, Massimo Caratelli, Vladimiro Marini, Kostyuk A., Tutino M., Barbaraci, I., Caratelli, M., and Marini, V.
- Subjects
Finance ,Private equity ,business.industry ,Equity (finance) ,Financial distress ,business - Abstract
We study whether Private Equity acquirers (sponsors) are long-term oriented with their Leveraged Buyout (LBO) European targets. These temporary acquisitions aim to restore the target’s value and to provide a capital gain to the sponsor. The performance-based reputation of the sponsor could incentivize the latter to value capture at the expense of the target rather than value creation. Since LBOs are highly-levered transactions and sponsors are active investors, we study how corporate governance mechanisms, namely equity stakes and enhanced industry expertise, affect the target’s risk of financial distress (Altman’s Z-score; O-score; Zmijewski-Score). Studying a 2013-2016 sample of 307 firms (targets and non-LBO firms), with a linear regression we find that sponsors, compared to other types of ownership, make a better use of equity stakes and industry experts to improve strategic planning and ultimately to mitigate the risk of financial distress of the target; however, results do not completely exclude that sponsors use these corporate governance mechanisms also for value capture, especially by opportunistic uses of assets rather than an inefficient use of leverage. These findings are useful to targets, investors in PE-LBO funds, and regulators.
- Published
- 2019
136. Predictive Power of Fair Value Hierarchy in Asset Valuation. An International Research on the Insurance Sector
- Author
-
TUTINO, MARCO, REGOLIOSI, CARLO, Tutino M. - Regoliosi C., Tutino, Marco, and Regoliosi, Carlo
- Published
- 2015
137. Earnings Management: A Literature Review in the Actual Debate
- Author
-
TUTINO, MARCO, RUSSO E., Tutino M. - Russo E., Tutino, Marco, and Russo, E.
- Subjects
creative acccounting ,Earning management ,financial disclosure - Abstract
Over the last years, earnings management came to light as a phenomenon which gathers numerous evidences from all over the world. It is actually one of the main topic in academic research on accounting. Adopting a content analysis approach, the paper offers a synthetic review of academic literature and empirical evidences all over the world on earnings management. First, the contribute takes place in considering the phenomenon looking at the various definitions and techniques. Secondly, it considers the earnings management policy and the differences between earnings management, creative accounting and fraud. The evidences gathered allow to state that the topic is still widely opened to further research. In synthesis, the paper contributes to highlight the earning management topic relating to different perspective of analysis.
- Published
- 2014
138. Influence of growth temperature on the production of antibody Fab fragments in different microbes:A host comparative analysis
- Author
-
Lise Bernard-Granger, Jaana Tokkanen, Danilo Porro, Martin Dragosits, Gianni Frascotti, Tiina Pakula, Diethard Mattanovich, Kristin Baumann, Escarlata Rodríguez-Carmona, Michael Maurer, Maria Luisa Tutino, Renate Kunert, Paola Branduardi, Maria Giuliani, Merja Penttilä, Felícitas Vázquez, Michael Sauer, Pau Ferrer, Antonio Villaverde, Brigitte Gasser, Marilyn G. Wiebe, Ermenegilda Parrilli, Markku Saloheimo, Dragosits, M, Frascotti, G, Bernard Granger, L, Vázquez, F, Giuliani, M, Baumann, K, Rodríguez Carmona, E, Tokkanen, J, Parrilli, Ermenegilda, Wiebe, Mg, Kunert, R, Maurer, M, Gasser, B, Sauer, M, Branduardi, P, Pakula, T, Saloheimo, M, Penttilä, M, Ferrer, P, Tutino, MARIA LUISA, Villaverde, A, Porro, D, Mattanovich, D., Vazquez, F, Rodriguez Carmona, E, Parrilli, E, Wiebe, M, Penttila, M, Tutino, M, and Mattanovich, D
- Subjects
Trichoderma reesei ,Saccharomyces cerevisiae ,Microbial metabolism ,Enzyme-Linked Immunosorbent Assay ,Chemostat ,medicine.disease_cause ,Microbiology ,Pseudoalteromonas haloplanktis ,Pichia pastoris ,Immunoglobulin Fab Fragments ,Species Specificity ,Yeasts ,medicine ,Escherichia coli ,Bacteria ,biology ,recombinant protein production, chemostat, Saccharomyces cerevisiae, Pichia pastoris, Trichoderma reesei, Escherichia coli, Pseudoalteromonas haloplanktis ,Temperature ,biology.organism_classification ,CHIM/11 - CHIMICA E BIOTECNOLOGIA DELLE FERMENTAZIONI ,Recombinant protein production ,Biochemistry ,Protein folding ,Biotechnology - Abstract
Microorganisms encounter diverse stress conditions in their native habitats but also during fermentation processes, which have an impact on industrial process performance. These environmental stresses and the physiological reactions they trigger, including changes in the protein folding/secretion machinery, are highly interrelated. Thus, the investigation of environmental factors, which influence protein expression and secretion is still of great importance. Among all the possible stresses, temperature appears particularly important for bioreactor cultivation of recombinant hosts, as reductions of growth temperature have been reported to increase recombinant protein production in various host organisms. Therefore, the impact of temperature on the secretion of proteins with therapeutic interest, exemplified by a model antibody Fab fragment, was analyzed in five different microbial protein production hosts growing under steady-state conditions in carbon-limited chemostat cultivations. Secretory expression of the heterodimeric antibody Fab fragment was successful in all five microbial host systems, namely Saccharomyces cerevisiae, Pichia pastoris, Trichoderma reesei, Escherichia coli and Pseudoalteromonas haloplanktis. In this comparative analysis we show that a reduction of cultivation temperature during growth at constant growth rate had a positive effect on Fab 3H6 production in three of four analyzed microorganisms, indicating common physiological responses, which favor recombinant protein production in prokaryotic as well as eukaryotic microbes. © 2010 American Institute of Chemical Engineers.
- Published
- 2011
- Full Text
- View/download PDF
139. La disciplina della responsabilità amministrativa delle società e degli enti
- Author
-
CINCIMINO, Salvatore, Troina, G, Cincimino, S, Marinelli, U, Pardini, W, Regoliosi, C, Santoro, L, Stesuri, A, and Tutino, M
- Subjects
Settore SECS-P/07 - Economia Aziendale ,responsabilità amministrativa società e enti, modelli organizzativi, risk management ,enti ,modelli organizzativi ,società ,responsabilità amministrativa - Abstract
Il capitolo tratta della disciplina della responsabilità amministrativa delle società e degli enti (D. Lgs. 231/2001), con specifico riguardo agli aspetti economico-aziendali. L’adozione e l’attuazione dei modelli organizzativi possono infatti rappresentare un interessante strumento a supporto della riduzione del rischio generale di impresa, e di controllo dei rischi particolari. Particolare attenzione viene inoltre posta sui più recenti contributi della dottrina giuridica ed economico-aziendale in argomento, e sulla disciplina dell’organismo di vigilanza. Si tratta della versione aggiornata dell'edizione 2010 del volume
- Published
- 2010
140. Protein folding and conformational stress in microbial cells producing recombinant proteins : a host comparative overview
- Author
-
Pau Ferrer, Ermenegilda Parrilli, Markku Saloheimo, Christine Lang, Paola Branduardi, Danilo Porro, Ursula Rinas, Diethard Mattanovich, Brigitte Gasser, Maria Giuliani, Antonio Villaverde, Escarlata Rodríguez-Carmona, Maria Luisa Tutino, Martin Dragosits, Kristin Baumann, Gasser, B., Saloheimo, M., Rinas, U., Dragosits, M., Rodríguez Carmona, E., Baumann, K., Giuliani, M., Parrilli, Ermenegilda, Branduardi, P., Lang, C., Porro, D., Ferrer, P., Tutino, MARIA LUISA, Mattanovich, D., Villaverde, A., University of Natural Resources and Applied Life Sciences Vienna, Department of Biotechnology, Vienna, Austria. diethard.mattanovich@boku.ac.at., Gasser, B, Saloheimo, M, Rinas, U, Dragosits, M, Rodriguez Carmona, E, Baumann, K, Giuliani, M, Parrilli, E, Branduardi, P, Lang, C, Porro, D, Ferrer, P, Tutino, M, Mattanovich, D, and Villaverde, A
- Subjects
biology ,Host (biology) ,Microorganism ,Cell ,lcsh:QR1-502 ,Bioengineering ,Review ,biology.organism_classification ,Applied Microbiology and Biotechnology ,lcsh:Microbiology ,law.invention ,medicine.anatomical_structure ,Biochemistry ,law ,medicine ,Recombinant DNA ,Native state ,Protein biosynthesis ,recominant proteins production, microorganisms, stress response ,Protein folding ,Bacteria ,Biotechnology - Abstract
Different species of microorganisms including yeasts, filamentous fungi and bacteria have been used in the past 25 years for the controlled production of foreign proteins of scientific, pharmacological or industrial interest. A major obstacle for protein production processes and a limit to overall success has been the abundance of misfolded polypeptides, which fail to reach their native conformation. The presence of misfolded or folding-reluctant protein species causes considerable stress in host cells. The characterization of such adverse conditions and the elicited cell responses have permitted to better understand the physiology and molecular biology of conformational stress. Therefore, microbial cell factories for recombinant protein production are depicted here as a source of knowledge that has considerably helped to picture the extremely rich landscape of in vivo protein folding, and the main cellular players of this complex process are described for the most important cell factories used for biotechnological purposes.
- Published
- 2008
- Full Text
- View/download PDF
141. Skin health restoration after craniofacial cancer resection. our exeperience with a new patented method
- Author
-
E. Ochoa, Rosalia Gargano, M. Tutino, Salvatore Restivo, S. Casanova, TUTINO M, GARGANO R, OCHOA E, CASANOVA S, and RESTIVO S
- Subjects
medicine.medical_specialty ,Otorhinolaryngology ,business.industry ,Medicine ,Surgery ,Oral Surgery ,Craniofacial ,business ,Cancer resection - Published
- 2005
142. Secretion of alpha-amylase from Pseudoalteromonas haloplanktis TAB23: two different pathways in different hosts
- Author
-
Ermenegilda Parrilli, Gennaro Marino, Laura Giaquinto, Angela Duilio, Georges Feller, Maria Luisa Tutino, Giovanni Sannia, M. L., Tutino, Parrilli, Ermenegilda, L., Giaquinto, Duilio, Angela, G., Sannia, G., Feller, G., Marino, Tutino, MARIA LUISA, Giaquinto, L, Duilio, A, Sannia, Giovanni, Feller, G, AND G., Marino, Tutino, M. L., Giaquinto, L., Duilio, A., Feller, G., and Marino, G.
- Subjects
Genetic Vectors ,Antarctic Regions ,medicine.disease_cause ,Microbiology ,Pseudoalteromonas haloplanktis ,Microbial Cell Biology ,medicine ,Secretion ,Amylase ,Psychrophile ,Molecular Biology ,Escherichia coli ,chemistry.chemical_classification ,biology ,biology.organism_classification ,Recombinant Proteins ,Cold Temperature ,Enzyme ,Biochemistry ,chemistry ,biology.protein ,alpha-Amylases ,Alpha-amylase ,Bacteria ,Gammaproteobacteria - Abstract
Secretion of cold-adapted α-amylase from Pseudoalteromonas haloplanktis TAB23 was studied in three Antarctic bacteria. We demonstrated that the enzyme is specifically secreted in the psychrophilic hosts even in the absence of a protein domain that has been previously reported to be necessary for α-amylase secretion in Escherichia coli . The occurrence of two different secretion pathways in different hosts is proposed.
- Published
- 2002
143. A novel replication element from an Antarctic plasmid as a tool for the expression of proteins at low temperature. ()
- Author
-
Angela Duilio, Giovanni Sannia, Ermenegilda Parrilli, Maria Luisa Tutino, Erik Remaut, Gennaro Marino, Tutino, MARIA LUISA, Duilio, Angela, Parrilli, Ermenegilda, E., Remaut, Sannia, Giovanni, G., Marino, Duilio, A., Remaut, E., G. SANNIA AND G. M. A. R. I. N. O., Duilio, A, Remaut, E, Marino, Gennaro, Tutino, M. L., Marino, G., and SANNIA G. AND G., Marino
- Subjects
Autonomously replicating sequence ,Antarctic Regions ,Biology ,Microbiology ,Plasmid ,Pseudoalteromonas haloplanktis ,law.invention ,law ,Replicon ,Psychrophile ,cold-adapted bacterium ,Genetics ,Regulation of gene expression ,Expression vector ,Gram-Negative Aerobic Bacteria ,Temperature ,Proteins ,General Medicine ,biology.organism_classification ,Gene Expression Regulation ,Protein Biosynthesis ,Recombinant DNA ,Molecular Medicine ,Plasmids - Abstract
Genetic manipulation of Antarctic bacteria has been very limited so far. This article reports the isolation and molecular characterization of a novel plasmid, pMtBL, from the Antarctic gram-negative bacterium Pseudoalteromonas haloplanktis TAC 125. This genetic element, 4,081 bp long, appeared to be a multicopy cryptic replicon with no detectable transcriptional activity. By an in vivo assay, the pMtBL autonomous replication sequence was functionally limited to an AluI plasmid fragment of about 850 bp. This novel cold-adapted replication element showed quite a broad host range profile: it was cloned into a mesophilic genetic construction, obtaining a cold-adapted expression vector that was able to promote the production of P. haloplanktis A23 alpha-amylase in a psychrophilic bacterium. This study represents the first report of successful recombinant production of a cold-adapted protein in an Antarctic host.
- Published
- 2001
144. Molecular characterization of a recombinant replication protein (Rep) from the Antarctic bacterium Psychrobacter sp TA144
- Author
-
Vittoria Matafora, M. Luisa Tutino, Angela Duilio, Gennaro Marino, Giovanni Sannia, Duilio, A., Tutino, MARIA LUISA, Matafora, V., Sannia, Giovanni, Marino, G., Duilio, Angela, M. L., Tutino, V., Matafora, G., Sannia, G., Marino, Duilio, A, Tutino, Ml, Matafora, V, Sannia, G, Marino, Gennaro, and Tutino, M. L.
- Subjects
DNA Replication ,DNA, Bacterial ,Protein Folding ,TOPOISOMERASE ,Population ,Molecular Sequence Data ,Antarctic Regions ,Biology ,medicine.disease_cause ,Microbiology ,SEQUENCE ,Inclusion bodies ,Frameshift mutation ,Plasmid ,PT181 FAMILY ,Genetics ,medicine ,Amino Acid Sequence ,Psychrobacter ,education ,Frameshift Mutation ,Molecular Biology ,Escherichia coli ,SPECIFICITY ,education.field_of_study ,Expression vector ,Base Sequence ,ORIGIN ,ROLLING-CIRCLE REPLICATION ,DNA Helicases ,biology.organism_classification ,Recombinant Proteins ,INITIATOR PROTEIN ,Cold Temperature ,DNA-Binding Proteins ,Spectrometry, Fluorescence ,Biochemistry ,Rolling circle replication ,Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization ,Trans-Activators ,PLASMID COPY ,Gammaproteobacteria ,Plasmids - Abstract
The Antarctic Gram-negative bacterium Psychrobacter sp. TA144 contains two small cryptic plasmids, called pTAUp and pTADw. pTAUp encodes a replication enzyme (PsyRep) whose activity is responsible for plasmid replication via the rolling circle replication pathway. Several attempts to produce the wild-type biologically active PsyRep in Escherichia coil failed, possibly due to auto-regulation of the protein population. However, the serendipitous occurrence of a Frameshift mutation during the preparation of an expression vector resulted in the over-production of a recombinant protein, changed in its last 14 amino acid residues (PsyRep*), that precipitates in insoluble form. The purification of PsyRep* inclusion bodies and the successful refolding of the cold adapted enzyme allowed us to carry out its functional characterization. The mutated protein still displays a double stranded DNA nicking activity, while the change at the C-terminus impairs the enzyme specificity for the pTAUp cognate Ori(+) sequence. (C) 2001 Federation of European Microbiological Societies. Published by Elsevier Science B.V. All rights reserved.
- Published
- 2001
145. La Lupa, ossia La Nostalgia del Sangue
- Author
-
OLIVERI, Dario, Oddo, L, Cefalù, N, Oliveri, D, Tutino, M, Lironi, L, Gualerzi, L, and Toscano, S
- Subjects
Italia, Novecento, Musica, Teatro Musicale, Verismo, La Lupa, Giovanni Verga, Marco Tutino, Giuseppe Di Leva ,Settore L-ART/07 - Musicologia E Storia Della Musica - Abstract
Il saggio traccia un quadro della produzione teatrale di Marco Tutino sino alla fine degli anni Novanta, con particolare riferimento all'articolazione drammaturgica e ai caratteri musicali dell'opera in una atto "La Lupa" (libretto di Giuseppe Di Leva, dal racconto omonimo di Giovanni Verga).
- Published
- 1998
146. Gianni Schicchi, ossia Il Commiato delle Maschere
- Author
-
OLIVERI, Dario, Oddo, L, Cefalù, N, Oliveri, D, Tutino, M, Lironi, L, Gualerzi G, and Toscano, S
- Subjects
Italia, Musica, Teatro musicale, Novecento, Giacomo Puccini, Il Trittico, Guanni Schicchi, Giovacchino Forzano ,Settore L-ART/07 - Musicologia E Storia Della Musica - Abstract
Il saggio affronta alcuni dei temi fondamentali del "tardo stile" di Giacomo Puccini, con particolare riferimento all'individuazione dei soggetti teatrali, alla genesi del "Trittico" e alla struttura teatrale e musicale dell'opera in un atto "Gianni Schicchi".
- Published
- 1998
147. Expression of Sulfolobus solfataricus TrpE and TrpG genes in E. coli
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Gennaro Marino, Giovanni Sannia, Maria Luisa Tutino, Alessandra Tosco, Tutino, M. L., Tosco, A., Marino, G., Sannia, Giovanni, Tutino, MARIA LUISA, A., Tosco, and G., Marino
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MECHANISM ,"Sulfolobus solfataricus" ,Molecular Sequence Data ,Size-exclusion chromatography ,ved/biology.organism_classification_rank.species ,Biophysics ,Polymerase Chain Reaction ,Biochemistry ,Sulfolobus ,law.invention ,law ,Escherichia coli ,Amino Acid Sequence ,Cloning, Molecular ,Molecular Biology ,Gene ,Anthranilate Synthase ,DNA Primers ,SERRATIA-MARCESCENS ,chemistry.chemical_classification ,Base Sequence ,Sequence Homology, Amino Acid ,ATP synthase ,biology ,ved/biology ,Sulfolobus solfataricus ,SALMONELLA-TYPHIMURIUM ,Wild type ,ANTHRANILATE SYNTHETASE ,Cell Biology ,Molecular biology ,Recombinant Proteins ,Kinetics ,Enzyme ,chemistry ,Genes, Bacterial ,ESCHERICHIA-COLI ,biology.protein ,Recombinant DNA ,Anthranilate synthase - Abstract
The genes trpE and trpG of the hyperthermophilic archaeon Sulfolobus solfataricus, encoding the components I and II of anthranilate synthase, were cloned and co-expressed in Escherichia coli. The properties of the recombinant protein were determined and compared to those of the wild type complex. Gel filtration chromatography revealed an alpha(2) beta(2) composition. The heteromeric enzyme is fully active above 85 degrees C and can be considered to be an ''extremozyme'' according to Adams et al.[1]. Sulfolobus solfataricus anthranilate synthase is subject to feedback inhibition by L-tryptophan even if it lacks the co-operativity that has been observed for all the other tetrameric anthranilate synthases. (C) 1997 Academic Press
- Published
- 1997
148. Primary cartilage transcriptional signatures reflect cell-type-specific molecular pathways underpinning osteoarthritis.
- Author
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Katsoula G, Lawrence JEG, Arruda AL, Tutino M, Balogh P, Southam L, Swift D, Behjati S, Teichmann SA, Wilkinson JM, and Zeggini E
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- Humans, Transcriptome, Cartilage metabolism, Cartilage pathology, Gene Regulatory Networks, Cartilage, Articular metabolism, Cartilage, Articular pathology, Female, Male, Osteoblasts metabolism, Osteoarthritis genetics, Osteoarthritis pathology, Osteoarthritis metabolism, Chondrocytes metabolism, Chondrocytes pathology, Genome-Wide Association Study
- Abstract
Translational efforts in osteoarthritis are hampered by a gap in our understanding of disease processes at the molecular level. Here, we present evidence of pronounced transcriptional changes in high- and low-disease-grade cartilage tissue, pointing to embryonic processes involved in disease progression. We identify shared transcriptional programs between osteoarthritis cartilage and cell populations in the human embryonic and fetal limb, pointing to increases in pre-hypertrophic chondrocytes' transcriptional programs in low-grade cartilage and increases in osteoblastic signatures in high-grade disease tissue. We find that osteoarthritis genetic risk signals are enriched in six gene co-expression modules and show that these transcriptional signatures reflect cell-type-specific expression along the endochondral ossification developmental trajectory. Using this network approach in combination with causal inference analysis, we present evidence of a causal effect on osteoarthritis risk for variants associated with the expression of ten genes that have not been previously reported as effector genes in genome-wide association studies in osteoarthritis. Our findings point to key molecular pathways as drivers of cartilage degeneration and identify high-value drug targets and repurposing opportunities., Competing Interests: Declaration of interests In the last three years, S.A.T. has been a remunerated consultant for Sanofi, Foresite Labs. and Qiagen and is a consultant and equity holder of TransitionBio and EnsoCell Therapeutics., (Copyright © 2024 The Authors. Published by Elsevier Inc. All rights reserved.)
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- 2024
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149. Primary osteoarthritis chondrocyte map of chromatin conformation reveals novel candidate effector genes.
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Bittner N, Shi C, Zhao D, Ding J, Southam L, Swift D, Kreitmaier P, Tutino M, Stergiou O, Cheung JTS, Katsoula G, Hankinson J, Wilkinson JM, Orozco G, and Zeggini E
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- Humans, Female, Male, Middle Aged, Aged, Promoter Regions, Genetic genetics, Enhancer Elements, Genetic genetics, Insulin-Like Growth Factor I genetics, Insulin-Like Growth Factor I metabolism, Chondrocytes metabolism, Chondrocytes pathology, Genome-Wide Association Study, Osteoarthritis, Knee genetics, Osteoarthritis, Knee pathology, Osteoarthritis, Knee metabolism, Chromatin genetics
- Abstract
Objectives: Osteoarthritis is a complex disease with a huge public health burden. Genome-wide association studies (GWAS) have identified hundreds of osteoarthritis-associated sequence variants, but the effector genes underpinning these signals remain largely elusive. Understanding chromosome organisation in three-dimensional (3D) space is essential for identifying long-range contacts between distant genomic features (e.g., between genes and regulatory elements), in a tissue-specific manner. Here, we generate the first whole genome chromosome conformation analysis (Hi-C) map of primary osteoarthritis chondrocytes and identify novel candidate effector genes for the disease., Methods: Primary chondrocytes collected from 8 patients with knee osteoarthritis underwent Hi-C analysis to link chromosomal structure to genomic sequence. The identified loops were then combined with osteoarthritis GWAS results and epigenomic data from primary knee osteoarthritis chondrocytes to identify variants involved in gene regulation via enhancer-promoter interactions., Results: We identified 345 genetic variants residing within chromatin loop anchors that are associated with 77 osteoarthritis GWAS signals. Ten of these variants reside directly in enhancer regions of 10 newly described active enhancer-promoter loops, identified with multiomics analysis of publicly available chromatin immunoprecipitation sequencing (ChIP-seq) and assay for transposase-accessible chromatin using sequencing (ATAC-seq) data from primary knee chondrocyte cells, pointing to two new candidate effector genes SPRY4 and PAPPA (pregnancy-associated plasma protein A) as well as further support for the gene SLC44A2 known to be involved in osteoarthritis. For example, PAPPA is directly associated with the turnover of insulin-like growth factor 1 (IGF-1) proteins, and IGF-1 is an important factor in the repair of damaged chondrocytes., Conclusions: We have constructed the first Hi-C map of primary human chondrocytes and have made it available as a resource for the scientific community. By integrating 3D genomics with large-scale genetic association and epigenetic data, we identify novel candidate effector genes for osteoarthritis, which enhance our understanding of disease and can serve as putative high-value novel drug targets., Competing Interests: Competing interests: None declared., (© Author(s) (or their employer(s)) 2024. Re-use permitted under CC BY. Published by BMJ.)
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- 2024
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150. Identification of differences in CD4 + T-cell gene expression between people with asthma and healthy controls.
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Tutino M, Hankinson J, Murray C, Lowe L, Kerry G, Rattray M, Custovic A, Johnston SL, Shi C, Orozco G, Eyre S, Martin P, Simpson A, and Curtin JA
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- Humans, Genome-Wide Association Study, Gene Expression Profiling, Transcriptome, CD4-Positive T-Lymphocytes, Gene Regulatory Networks, Asthma metabolism, Virus Diseases metabolism
- Abstract
Functional enrichment analysis of genome-wide association study (GWAS)-summary statistics has suggested that CD4
+ T-cells play an important role in asthma pathogenesis. Despite this, CD4+ T-cells are under-represented in asthma transcriptome studies. To fill the gap, 3'-RNA-Seq was used to generate gene expression data on CD4+ T-cells (isolated within 2 h from collection) from peripheral blood from participants with well-controlled asthma (n = 32) and healthy controls (n = 11). Weighted Gene Co-expression Network Analysis (WGCNA) was used to identify sets of co-expressed genes (modules) associated with the asthma phenotype. We identified three modules associated with asthma, which are strongly enriched for GWAS-identified asthma genes, antigen processing/presentation and immune response to viral infections. Through integration of publicly available eQTL and GWAS summary statistics (colocalisation), and protein-protein interaction (PPI) data, we identified PTPRC, a potential druggable target, as a putative master regulator of the asthma gene-expression profiles. Using a co-expression network approach, with integration of external genetic and PPI data, we showed that CD4+ T-cells from peripheral blood from asthmatics have different expression profiles, albeit small in magnitude, compared to healthy controls, for sets of genes involved in immune response to viral infections (upregulated) and antigen processing/presentation (downregulated)., (© 2023. The Author(s).)- Published
- 2023
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